[Debian-med-packaging] Bug#1147568: ITP: lsd2 -- least-squares method to estimate rates and dates from phylogenies

[Andreas Tille]

Package: wnpp
Severity: wishlist
X-Debbugs-Cc: tille at debian.org

Subject: ITP: lsd2 -- least-squares method to estimate rates and dates from phylogenies
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : lsd2
  Version         : 1.9.9
  Upstream Author : Thu-Hien To
* URL             : https://github.com/tothuhien/lsd2
* License         : GPL-3+
  Programming Lang: C
  Description     : least-squares method to estimate rates and dates from phylogenies
 LSD2 (Least-Squares Dating) infers substitution rates and node dates
 on a fixed phylogenetic tree topology using least-squares criteria.
 .
 Features include:
  * rooted and unrooted input trees, with or without outgroups;
  * flexible tip/internal-node date constraints (fixed dates, bounds,
    or intervals), including trees with only partially known dates;
  * multiple substitution rates via user-defined tree partitions;
  * confidence interval estimation via parametric bootstrap;
  * detection and removal of outlier tips/dates.
 .
 LSD2 is also integrated as a library into IQ-TREE for divergence-time
 estimation.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/lsd2