[Debian-med-packaging] relion_5.1.0+dfsg-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Thank you for your contribution to Debian.



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 24 Sep 2026 14:27:25 +0200
Source: relion
Architecture: source
Version: 5.1.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1097784 1113466
Changes:
 relion (5.1.0+dfsg-1) unstable; urgency=medium
 .
   [ Pierre Gruet ]
   * New upstream version 5.0.1+dfsg:
     - Repacking without embedded copy of Eigen
   * Adding B-D on libtorch-dev
   * Raising Standards version to 4.7.3:
     - Removing Priority: optional, which is default
 .
   [ Yavor Doganov ]
   * New upstream release:
     + Fixes FTBFS with GCC 15 (Closes: #1097784).
   * debian/patches/0001-Repair-wrong-comment-sign...patch: Delete; was
     cherry-picked from upstream.
   * debian/patches/typos.patch: Remove hunks applied upstream; fix more
     spelling errors.
   * debian/patches/format-security.patch: New; fix FTBFS
     with -Werror=format-security.
   * debian/patches/python3.patch: New; migrate the relion_it script from
     Python 2 to 3 as it's the core of on-the-fly processing.
   * debian/patches/system-eigen.patch: New; use the system Eigen library.
   * Run wrap-and-sort -ast.
   * debian/control
     - (Build-Depends): Remove fluid (unnecessary).  Add libpng-dev,
       dh-sequence-python3, python3 and libeigen3-dev.
     - (relion) <Depends>: Add ctffind (<< 5). <Recommends>: Add ghostscript
       (for generating PDF files), pbzip2, xz-utils and zstd (for reading
       compressed MRC movies).
     - (relion-gui) <Depends>: Add ${python3:Depends} and python3-tk.
       (Breaks, Replaces): Remove; obsolete.
       (Rules-Requires-Root): Remove; it's the default.
   * debian/rules: Enable full hardening.
     (CONFIGURE_COMMON): Remove redundant flags that are already set by
     debhelper's cmake build system.  Fix FTBFS with CMake 4 by adding
     -DCMAKE_POLICY_VERSION_MINIMUM=3.5 (Closes: #1113466).
     Add -DPYTHON_EXE_PATH=/usr/bin/python3 to override upstream's test
     which relies on a Conda environment.
     (NUMJOBS, MAKE_-J): Remove; gymnastics no longer necessary.
     (override_dh_auto_configure): Run dh_auto_configure.
     (override_dh_auto_build): Remove; redundant.
     (override_dh_auto_clean): Likewise.
     (override_dh_auto_install): Run dh_auto_install --destdir.  Rename
     scripts with .py extension to fix W: script-with-language-extension.
     Delete Python/Bash scripts which will fail due to missing modules.
   * debian/relion-gui.install: Install schemes in /usr/share/relion.
   * debian/README.Debian: New file; document missing functionality.
   * debian/watch: Upgrade to version 5.
   * debian/salsa-ci.yml: Use the default recipe.
   * debian/copyright: Update copyright years, fix superfluous patterns,
     add EPL and MPL-2 licenses.
 .
   [ Andreas Tille ]
   * New upstream version
   * Standards-Version: 4.7.4 (routine-update)
   * Build-Depends: pybuild-plugin-pyproject (routine-update)
   * Add missing build-dependency on python3-setuptools.
   * debputy lint --auto-fix (routine-update)
   * d/copyright:
      - Drop unused licenses
      - Do not mention removed src/Eigen
      - Use link to /usr/share/common-licenses/MPL-2.0 instead of full text
   * Fix FTBFS with Eigen 5
   * debian/rules: relion_schemegui is installed without a .py suffix
     since upstream 5.1.0; adjust the script renaming in
     override_dh_auto_install.
Checksums-Sha1:
 b64bef9785e70ff144c636e704d2348af0d498db 2281 relion_5.1.0+dfsg-1.dsc
 0d8c2ecc5073e5cf940a7dc4a69934ca56592fc6 1700440 relion_5.1.0+dfsg.orig.tar.xz
 1a9b81251c21e471fc3c6df99590c7802ce8ef48 18336 relion_5.1.0+dfsg-1.debian.tar.xz
 86395d1a1374b873a7875a922f867e3347f3e38a 13929 relion_5.1.0+dfsg-1_amd64.buildinfo
Checksums-Sha256:
 170c4c378124d21a24864a66af00bc507e5dda45cff9136ce2654cff165fd4d2 2281 relion_5.1.0+dfsg-1.dsc
 974fa1c5755069b2e6fbce0abedf03d20d27220292d66379f8e50aaf37136f0f 1700440 relion_5.1.0+dfsg.orig.tar.xz
 8548a1f87941be505fafd74ce9d049510480c75e6ef2e571fd47407eb8edba20 18336 relion_5.1.0+dfsg-1.debian.tar.xz
 61769fef141b2d83bda5d2dd54ed7f03e916040a0ef87d1765665dc0c36c7621 13929 relion_5.1.0+dfsg-1_amd64.buildinfo
Files:
 568ac99f8644315dbecf0ba5c598b656 2281 science optional relion_5.1.0+dfsg-1.dsc
 7c0579f3e4b19cf5066efed7e48ebc5c 1700440 science optional relion_5.1.0+dfsg.orig.tar.xz
 eccd65b5db033b272cd5509db4e92250 18336 science optional relion_5.1.0+dfsg-1.debian.tar.xz
 1313f51ff33240742de157ff9405da37 13929 science optional relion_5.1.0+dfsg-1_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=692w
-----END PGP SIGNATURE-----

-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: application/pgp-signature
Size: 228 bytes
Desc: not available
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20260924/3d8bb43b/attachment.sig>