[Debian-med-packaging] relion-cuda_5.1.0+dfsg-1_source.changes ACCEPTED into unstable
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Accepted:
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Hash: SHA512
Format: 1.8
Date: Thu, 24 Sep 2026 20:56:51 +0200
Source: relion-cuda
Architecture: source
Version: 5.1.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Closes: 1036681 1040128 1147432
Changes:
relion-cuda (5.1.0+dfsg-1) unstable; urgency=medium
.
[ Pierre Gruet ]
* New upstream version 5.0.1+dfsg:
- Repacking without embedded copy of Eigen
* Adding B-D on libtorch-dev
* Raising Standards version to 4.7.3:
- Removing Priority: optional, which is default
.
[ Yavor Doganov ]
* New upstream release.
* debian/patches/0001-Repair-wrong-comment-sign...patch: Delete; was
cherry-picked from upstream.
* debian/patches/typos.patch: Remove hunks applied upstream; fix more
spelling errors.
* debian/patches/format-security.patch: New; fix FTBFS
with -Werror=format-security.
* debian/patches/python3.patch: New; migrate the relion_it script from
Python 2 to 3 as it's the core of on-the-fly processing.
* debian/patches/system-eigen.patch: New; use the system Eigen library.
* Run wrap-and-sort -ast.
* debian/control
- (Build-Depends): Remove fluid (unnecessary). Add libpng-dev,
dh-sequence-python3, python3 and libeigen3-dev.
- (relion-cuda) <Depends>: Add ctffind (<< 5). <Recommends>: Add
ghostscript (for generating PDF files), pbzip2, xz-utils and zstd
(for reading compressed MRC movies).
- (relion-gui-cuda) <Depends>: Add ${python3:Depends} and python3-tk.
(Breaks, Replaces): Remove; obsolete.
(Rules-Requires-Root): Remove; it's the default.
* debian/rules: Enable full hardening.
(CONFIGURE_COMMON): Remove redundant flags that are already set by
debhelper's cmake build system. Fix FTBFS with CMake 4 by adding
-DCMAKE_POLICY_VERSION_MINIMUM=3.5.
Add -DPYTHON_EXE_PATH=/usr/bin/python3 to override upstream's test
which relies on a Conda environment.
(NUMJOBS, MAKE_-J): Remove; gymnastics no longer necessary.
(override_dh_auto_configure): Run dh_auto_configure with CUDA=ON and
CMAKE_CUDA_HOST_COMPILER=/usr/bin/cuda-gcc.
(override_dh_auto_build): Remove; redundant.
(override_dh_auto_clean): Likewise.
(override_dh_auto_install): Run dh_auto_install --destdir. Rename
scripts with .py extension to fix W: script-with-language-extension.
Delete Python/Bash scripts which will fail due to missing modules.
* debian/relion-gui-cuda.install: Install schemes in /usr/share/relion.
* debian/README.Debian: New file; document missing functionality.
* debian/watch: Upgrade to version 5.
* debian/salsa-ci.yml: Use the default recipe.
* debian/copyright: Update copyright years, fix superfluous patterns,
add EPL and MPL-2 licenses.
.
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.7.4 (routine-update)
* Build-Depends: pybuild-plugin-pyproject (routine-update)
* Add missing build-dependency on python3-setuptools.
* debputy lint --auto-fix (routine-update)
* d/copyright:
- Drop unused licenses
- Do not mention removed src/Eigen
- Use link to /usr/share/common-licenses/MPL-2.0 instead of full text
* Fix FTBFS with Eigen 5
* debian/rules: relion_schemegui is installed without a .py suffix
since upstream 5.1.0; adjust the script renaming in
override_dh_auto_install.
* New upstream release fixes relion-cuda FTBFS with CUDA 12 (nvcc no
longer supports sm_35) and with cub 2.0.1.
(Closes: #1036681, #1040128, #1147432)
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