<div dir="ltr">I also have the same problem. Log:<div><div>$ cat x.fq                                  </div><div>@C17VNACXX121020:6:1101:10000:52894/2</div><div>AGACCTCGCTACCCGCCAGCGGGGA</div><div>+</div><div>CCCFFFFFHHGHHJJJJJJJJJJJA</div>

<div>$ fastqc x.fq</div><div>Started analysis of x.fq</div><div>Analysis complete for x.fq</div><div>Failed to process file x.fq</div><div>java.lang.NullPointerException</div><div>        at uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:170)</div>

<div>        at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:60)</div><div>        at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:157)</div><div>
        at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:108)</div>
<div>        at java.lang.Thread.run(Thread.java:722)</div><div>$ fastqc -version</div><div>FastQC v0.10.1</div><div><br></div><div><br>---<br>Best regards,<br>Alexey Sergushichev,<br>University ITMO, St. Petersburg, Russia</div>


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