<html><head><style>body{font-family:Helvetica,Arial;font-size:13px}</style></head><body style="word-wrap:break-word"><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Hi, Andreas. I suspect it's specific to GCC 6 and should hopefully be easily resolved. Can you please open a bug report at</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><a href="https://github.com/bcgsc/abyss/issues">https://github.com/bcgsc/abyss/issues</a></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Thanks,</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Shaun</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div> <div id="bloop_sign_1475855785256081152" class="bloop_sign"><font face="helvetica, arial">-- </font><br><a href="http://sjackman.ca"><span style="color:rgb(0,0,0);font-family:helvetica,arial">http://sjackman.ca</span></a></div> <br><p class="airmail_on">On October 5, 2016 at 22:05:19, Andreas Tille (<a href="mailto:andreas@an3as.eu">andreas@an3as.eu</a>) wrote:</p> <blockquote type="cite" class="clean_bq"><span><div><div></div><div>Hi,
<br>
<br>On Wed, Sep 21, 2016 at 03:02:20PM -0700, Shaun Jackman wrote:
<br>> Hi, Andreas. ABySS 2.0.1 is now GPL-3 without the non-commercial
<br>> restriction!
<br>>  
<br>> <a href="https://github.com/bcgsc/abyss/releases">https://github.com/bcgsc/abyss/releases</a>
<br>
<br>I tried to build the latest version of ABySS.  Its commited to packaging
<br>Git[1] but does not build with the current gcc in Debian unstable:
<br>
<br>...
<br>g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I../lib/gtest-1.7.0/include -I../DataLayer -I../Common -I/build/abyss-2.0.1  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-2.0.1/boost_1_56_0 -Wall -Wextra -pthread -Wno-error -fopenmp -g -O2 -fdebug-prefix-map=/build/abyss-2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o DBG/DBG_LoadAlgorithm-LoadAlgorithmTest.o `test -f 'DBG/LoadAlgorithmTest.cpp' || echo './'`DBG/LoadAlgorithmTest.cpp
<br>In file included from ../lib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:40:0,
<br>                 from ../lib/gtest-1.7.0/include/gtest/gtest.h:58,
<br>                 from DBG/LoadAlgorithmTest.cpp:7:
<br>../lib/gtest-1.7.0/include/gtest/internal/gtest-port.h:557:14: error: 'tuple' is already declared in this scope
<br> using ::std::tuple;
<br>              ^~~~~
<br>../lib/gtest-1.7.0/include/gtest/internal/gtest-port.h:558:14: error: 'tuple_element' is already declared in this scope
<br> using ::std::tuple_element;
<br>              ^~~~~~~~~~~~~
<br>../lib/gtest-1.7.0/include/gtest/internal/gtest-port.h:559:14: error: 'tuple_size' is already declared in this scope
<br> using ::std::tuple_size;
<br>              ^~~~~~~~~~
<br>Makefile:1272: recipe for target 'DBG/DBG_LoadAlgorithm-LoadAlgorithmTest.o' failed
<br>make[3]: *** [DBG/DBG_LoadAlgorithm-LoadAlgorithmTest.o] Error 1
<br>make[3]: Leaving directory '/build/abyss-2.0.1/Unittest'
<br>
<br>
<br>May be this is also connected to some gtest issue.
<br>
<br>Any hint?
<br>
<br>Kind regards
<br>
<br>       Andreas.
<br>
<br>[1] <a href="https://anonscm.debian.org/git/debian-med/abyss.git">https://anonscm.debian.org/git/debian-med/abyss.git</a>
<br>
<br>--  
<br><a href="http://fam-tille.de">http://fam-tille.de</a>
<br></div></div></span></blockquote></body></html>