Bug#586205: slicer: gets stuck parsing directory

[Gabriele Giacone]

Package: slicer
Version: 3.4.0~svn10438-6
Severity: normal


Hello,
it happens with some of my volumes.

 - menu "File - Add Volume"
 - select directory which contains the series
 - click on "Parse directory" button
 - it opens a tiny window that says "Examining files ..." until 100%
 - it gets stuck on "Organizing Files..." message

Command line output:

$ slicer3
Starting Slicer: /usr
Generic Warning: In /build/buildd-vtk_5.4.2-6-i386-VcAHXL/vtk-5.4.2/Common/vtkTclUtil.cxx, line 726
Error returned from vtk/tcl callback:
::LoadVolume::loadVolume0 processEvent vtkObj5672
can't read "refHeader(0020|0037,value)": no such element in array
    while executing
"set refOrientation $refHeader($ORIENTATION,value)"
    (object "::LoadVolume::loadVolume0" method "::LoadVolume::organizeDICOMSeries" body line 86)
    invoked from within
"$this organizeDICOMSeries tree"
    (object "::LoadVolume::loadVolume0" method "::LoadVolume::parseDICOMDirectory" body line 89)
    invoked from within
"$this parseDICOMDirectory $dir _dicomTree"
    (object "::LoadVolume::loadVolume0" method "::LoadVolume::processEvent" body line 98)
    invoked from within
"::LoadVolume::loadVolume0 processEvent vtkObj5672" at line number 1



Thanks.


-- System Information:
Debian Release: squeeze/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 2.6.32-3-686 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages slicer depends on:
ii  itcl3             3.4~b1-2               [incr Tcl] OOP extension for Tcl -
ii  iwidgets4         4.0.1-5                [incr Widgets] Tk-based widget col
ii  libc6             2.10.2-9               Embedded GNU C Library: Shared lib
ii  libcurl3          7.20.1-2               Multi-protocol file transfer libra
ii  libfreetype6      2.3.11-1               FreeType 2 font engine, shared lib
ii  libgcc1           1:4.4.4-1              GCC support library
ii  libgdcm2.0        2.0.14-9               Grassroots DICOM runtime libraries
ii  libgl1-mesa-glx [ 7.7.1-2                A free implementation of the OpenG
ii  libinsighttoolkit 3.16.0-1               Image processing toolkit for regis
ii  libkwwidgets1.0.0 1.0.0~cvs20090825-4+b1 Cross-Platform GUI Toolkit - runti
ii  libopenigtlink1   1.0.0~svn6270-1        Open IGT Link is a simple network 
ii  libslicer3        3.4.0~svn10438-6       software package for visualization
ii  libstdc++6        4.4.4-1                The GNU Standard C++ Library v3
ii  libvtk5.4         5.4.2-6                Visualization Toolkit - A high lev
ii  slicer-data       3.4.0~svn10438-6       software package for visualization
ii  tcl8.5            8.5.8-2                Tcl (the Tool Command Language) v8
ii  tcl8.5-kwwidgets  1.0.0~cvs20090825-4+b1 Cross-Platform GUI Toolkit - TCL/T
ii  tcllib            1.12-dfsg-2            the Standard Tcl Library
ii  vtk-tcl           5.4.2-6                Tcl bindings for VTK

slicer recommends no packages.

slicer suggests no packages.

-- no debconf information