Bug#651041: mpich2: FTBFS: [m68k] no OpenPA atomic primitives
Thorsten Glaser
tg at mirbsd.de
Mon Dec 5 08:54:11 UTC 2011
Package: mpich2
Version: 1.4.1-1
Severity: normal
Justification: fails to build from source (but built successfully in the past)
See attached build log. I’ll try building openmpi next.
-- System Information:
Debian Release: wheezy/sid
APT prefers unreleased
APT policy: (500, 'unreleased'), (500, 'unstable')
Architecture: m68k
Kernel: Linux 3.0.0-2-atari
Locale: LANG=C, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/mksh-static
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I: Using pkgname logfile
I: Current time: Mon Dec 5 00:27:58 UTC 2011
I: pbuilder-time-stamp: 1323044878
I: Obtaining the cached apt archive contents
I: Installing the build-deps
W: no hooks of type D found -- ignoring
-> Attempting to parse the build-deps
-> Considering build-dep debhelper (>= 7)
-> Trying debhelper
-> Considering build-dep cdbs
-> Trying cdbs
-> Considering build-dep gfortran
-> Trying gfortran
-> Considering build-dep txt2man
-> Trying txt2man
-> Considering build-dep libxt-dev
-> Trying libxt-dev
-> Considering build-dep x11proto-core-dev
-> Trying x11proto-core-dev
-> Considering build-dep default-jdk
-> Trying default-jdk
-> Considering build-dep quilt
-> Trying quilt
-> Considering build-dep procps
-> Trying procps
-> Considering build-dep libhwloc-dev
-> Trying libhwloc-dev
-> Considering build-dep hwloc-nox
-> Trying hwloc-nox
-> Considering build-dep libcr-dev [amd64 armel i386 powerpc]
-> This package is not for this architecture
-> Considering build-dep automake
-> Trying automake
-> Installing debhelper cdbs gfortran txt2man libxt-dev x11proto-core-dev default-jdk quilt procps libhwloc-dev hwloc-nox automake
Reading package lists...
Building dependency tree...
Reading state information...
Starting
Starting 2
Done
debhelper is already the newest version.
The following extra packages will be installed:
autoconf autotools-dev default-jre default-jre-headless defoma diffstat ecj
ecj-gcj fastjar fontconfig fontconfig-config gawk gcj-4.4-base gcj-4.4-jdk
gcj-4.4-jre gcj-4.4-jre-headless gcj-4.4-jre-lib gcj-jdk gcj-jre
gcj-jre-headless gfortran-4.4 java-common libantlr-java libasound2
libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libcairo2
libcups2 libdatrie1 libdbus-1-3 libdirectfb-1.2-9 libecj-java
libecj-java-gcj libexpat1 libfontconfig1 libfreetype6 libgcj-bc
libgcj-common libgcj10 libgcj10-awt libgcj10-dev libgfortran3
libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhwloc4 libice-dev libice6
libjasper1 libjpeg62 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libncursesw5 libnewt0.52 libpango1.0-0 libpango1.0-common
libpci3 libpixman-1-0 libpng12-0 libpopt0 libpthread-stubs0
libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.0.0
libsysfs2 libthai-data libthai0 libtiff4 libts-0.0-0 libx11-6 libx11-data
libx11-dev libxau-dev libxau6 libxcb-render-util0 libxcb-render0 libxcb1
libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6
libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2-dev libxrandr2
libxrender1 libxt6 libxtst6 m4 mime-support python python-minimal python2.7
python2.7-minimal shared-mime-info tsconf ttf-dejavu-core ucf whiptail
x11-common x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev
zlib1g-dev
Suggested packages:
autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool devscripts
defoma-doc psfontmgr x-ttcidfont-conf ant gcj-4.4-source libgcj10-dbg
gfortran-doc gfortran-4.4-doc libgfortran3-dbg equivs libasound2-plugins
cups-common libgcj-doc krb5-doc krb5-user librsvg2-common gvfs
libjasper-runtime ttf-japanese-gothic ttf-japanese-mincho ttf-thryomanes
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp python-doc python-tk python2.7-doc binfmt-support
procmail graphviz
Recommended packages:
libfont-freetype-perl java-gcj-compat libatk1.0-data dbus hicolor-icon-theme
libgtk2.0-bin krb5-locales libgpm2 libfribidi0 psmisc
The following NEW packages will be installed:
autoconf automake autotools-dev cdbs default-jdk default-jre
default-jre-headless defoma diffstat ecj ecj-gcj fastjar fontconfig
fontconfig-config gawk gcj-4.4-base gcj-4.4-jdk gcj-4.4-jre
gcj-4.4-jre-headless gcj-4.4-jre-lib gcj-jdk gcj-jre gcj-jre-headless
gfortran gfortran-4.4 hwloc-nox java-common libantlr-java libasound2
libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libcairo2
libcups2 libdatrie1 libdbus-1-3 libdirectfb-1.2-9 libecj-java
libecj-java-gcj libexpat1 libfontconfig1 libfreetype6 libgcj-bc
libgcj-common libgcj10 libgcj10-awt libgcj10-dev libgfortran3
libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhwloc-dev libhwloc4
libice-dev libice6 libjasper1 libjpeg62 libjpeg8 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libncursesw5 libnewt0.52 libpango1.0-0
libpango1.0-common libpci3 libpixman-1-0 libpng12-0 libpopt0
libpthread-stubs0 libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6
libsqlite3-0 libssl1.0.0 libsysfs2 libthai-data libthai0 libtiff4
libts-0.0-0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb-render-util0 libxcb-render0 libxcb1 libxcb1-dev libxcomposite1
libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2
libxi6 libxinerama1 libxml2-dev libxrandr2 libxrender1 libxt-dev libxt6
libxtst6 m4 mime-support procps python python-minimal python2.7
python2.7-minimal quilt shared-mime-info tsconf ttf-dejavu-core txt2man ucf
whiptail x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded.
Need to get 3813 kB/69.4 MB of archives.
After this operation, 194 MB of additional disk space will be used.
Get:1 http://ftp.debian-ports.org/debian/ unstable/main libgcj-common all 1:4.4.6-4 [144 kB]
Get:2 http://ftp.debian-ports.org/debian/ unstable/main libgfortran3 m68k 4.6.2-5 [239 kB]
Get:3 http://ftp.debian-ports.org/debian/ unstable/main java-common all 0.45 [64.9 kB]
Get:4 http://ftp.debian-ports.org/debian/ unstable/main libantlr-java all 2.7.7+dfsg-2 [434 kB]
Get:5 http://ftp.debian-ports.org/debian/ unstable/main gfortran-4.4 m68k 4.4.6-11 [2915 kB]
Get:6 http://ftp.debian-ports.org/debian/ unstable/main txt2man all 1.5.5-4 [15.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking gcj-4.4-jre-lib (from .../gcj-4.4-jre-lib_4.4.6-11_all.deb) ...
Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_m68k.deb) ...
Selecting previously unselected package libgcj10-dev.
Unpacking libgcj10-dev (from .../libgcj10-dev_4.4.6-11_m68k.deb) ...
Selecting previously unselected package libecj-java.
Unpacking libecj-java (from .../libecj-java_3.5.1-3_all.deb) ...
Selecting previously unselected package ecj.
Unpacking ecj (from .../archives/ecj_3.5.1-3_m68k.deb) ...
Selecting previously unselected package libecj-java-gcj.
Unpacking libecj-java-gcj (from .../libecj-java-gcj_3.5.1-3_m68k.deb) ...
Selecting previously unselected package ecj-gcj.
Unpacking ecj-gcj (from .../ecj-gcj_3.5.1-3_m68k.deb) ...
Selecting previously unselected package fastjar.
Unpacking fastjar (from .../fastjar_2%3a0.98-3_m68k.deb) ...
Selecting previously unselected package libantlr-java.
Unpacking libantlr-java (from .../libantlr-java_2.7.7+dfsg-2_all.deb) ...
Selecting previously unselected package gcj-4.4-jdk.
Unpacking gcj-4.4-jdk (from .../gcj-4.4-jdk_4.4.6-11_m68k.deb) ...
Selecting previously unselected package gcj-jdk.
Unpacking gcj-jdk (from .../gcj-jdk_4.4.6-4_m68k.deb) ...
Selecting previously unselected package default-jdk.
Unpacking default-jdk (from .../default-jdk_1%3a1.5-40_m68k.deb) ...
Selecting previously unselected package diffstat.
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Selecting previously unselected package gfortran-4.4.
Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-11_m68k.deb) ...
Selecting previously unselected package gfortran.
Unpacking gfortran (from .../gfortran_4.4.6-4_m68k.deb) ...
Selecting previously unselected package libxml2-dev.
Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5_m68k.deb) ...
Selecting previously unselected package quilt.
Unpacking quilt (from .../archives/quilt_0.48-8_all.deb) ...
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Unpacking txt2man (from .../txt2man_1.5.5-4_all.deb) ...
Selecting previously unselected package hwloc-nox.
Unpacking hwloc-nox (from .../hwloc-nox_1.3-1_m68k.deb) ...
Selecting previously unselected package libhwloc-dev.
Unpacking libhwloc-dev (from .../libhwloc-dev_1.3-1_m68k.deb) ...
Processing triggers for man-db ...
Setting up libncursesw5 (5.9-4) ...
Setting up libssl1.0.0 (1.0.0e-3) ...
Setting up libkeyutils1 (1.5.2-2) ...
Setting up libkrb5support0 (1.10+dfsg~alpha1-6) ...
Setting up libk5crypto3 (1.10+dfsg~alpha1-6) ...
Setting up libkrb5-3 (1.10+dfsg~alpha1-6) ...
Setting up libgssapi-krb5-2 (1.10+dfsg~alpha1-6) ...
Setting up libpci3 (1:3.1.8-2) ...
Setting up gawk (1:3.1.8+dfsg-0.1) ...
Setting up libavahi-common-data (0.6.23-2) ...
Setting up libavahi-common3 (0.6.23-2) ...
Setting up libdbus-1-3 (1.4.16-1) ...
Setting up libavahi-client3 (0.6.23-2) ...
Setting up libcups2 (1.5.0-8) ...
Setting up libexpat1 (2.0.1-7.2) ...
Setting up libfreetype6 (2.4.8-1) ...
Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
Setting up python2.7-minimal (2.7.2-8) ...
Setting up mime-support (3.51-1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode.
Setting up libsqlite3-0 (3.7.9-2) ...
Setting up python2.7 (2.7.2-8) ...
Setting up python-minimal (2.7.2-9) ...
Setting up python (2.7.2-9) ...
Setting up libgcj-common (1:4.4.6-4) ...
Setting up gcj-4.4-base (4.4.6-11) ...
Setting up libasound2 (1.0.20-3) ...
Setting up libgcj10 (4.4.6-11) ...
Setting up libgcj-bc (4.4.6-4) ...
Setting up libatk1.0-0 (1.26.0-1) ...
Setting up libsysfs2 (2.1.0+repack-1) ...
Setting up tsconf (1.0-9) ...
Setting up libts-0.0-0 (1.0-7) ...
Setting up libdirectfb-1.2-9 (1.2.10.0-4.1) ...
Setting up libpixman-1-0 (0.14.0-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.4-2) ...
Setting up libxdmcp6 (1:1.0.2-3) ...
Setting up libxcb1 (1.3-2) ...
Setting up libx11-data (2:1.3.3-4) ...
Setting up libx11-6 (2:1.2.2-1) ...
Setting up libxcb-render0 (1.3-2) ...
Setting up libxcb-render-util0 (0.3.5-1) ...
Setting up libxrender1 (1:0.9.4-2) ...
Setting up libcairo2 (1.8.10-1) ...
Setting up libgtk2.0-common (2.24.8-1) ...
Setting up libjpeg8 (8c-2) ...
Setting up libjasper1 (1.900.1-11) ...
Setting up libjpeg62 (6b1-2) ...
Setting up libnewt0.52 (0.52.11-2.1) ...
Setting up libpopt0 (1.16-1) ...
Setting up whiptail (0.52.11-2.1) ...
Setting up defoma (0.11.12) ...
Setting up fontconfig (2.8.0-3) ...
Updating font configuration of fontconfig...
Cleaning up category cid..
Cleaning up category truetype..
Cleaning up category type1..
Updating category type1..
Updating category truetype..
Updating category cid..
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-common (1.28.3-2~sid1) ...
Cleaning up font configuration of pango...
Updating font configuration of pango...
Cleaning up category xfont..
Updating category xfont..
*** You don't have any defomized font packages.
*** So we are trying to force to generate pangox.aliases...
Setting up libdatrie1 (0.2.2-1) ...
Setting up libthai-data (0.1.16-2) ...
Setting up libthai0 (0.1.12-1) ...
Setting up libxft2 (2.1.13-3) ...
Setting up libpango1.0-0 (1.24.5-1) ...
Setting up libtiff4 (3.9.5-2) ...
Setting up libxext6 (2:1.0.4-1) ...
Setting up libxfixes3 (1:4.0.3-2) ...
Setting up libxcomposite1 (1:0.4.0-4) ...
Setting up libxcursor1 (1:1.1.9-1) ...
Setting up libxdamage1 (1:1.1.1-4) ...
Setting up libxi6 (1:1.0.1-4) ...
Setting up libxinerama1 (2:1.0.3-2) ...
Setting up libxrandr2 (2:1.3.0-2) ...
Setting up shared-mime-info (0.90-1) ...
Setting up libgtk2.0-0 (2.16.5-1) ...
Setting up libice6 (2:1.0.5-1) ...
Setting up libsm6 (2:1.1.0-2) ...
Setting up libxtst6 (2:1.0.3-1) ...
Setting up libgcj10-awt (4.4.6-11) ...
Setting up libgfortran3 (4.6.2-5) ...
Setting up xorg-sgml-doctools (1:1.8-2) ...
Setting up x11proto-core-dev (7.0.22-1) ...
Setting up libice-dev (2:1.0.5-1) ...
Setting up libsm-dev (2:1.1.0-2) ...
Setting up libxau-dev (1:1.0.4-2) ...
Setting up libxdmcp-dev (1:1.0.2-3) ...
Setting up x11proto-input-dev (1.3.2-4) ...
Setting up x11proto-kb-dev (1.0.5-2) ...
Setting up xtrans-dev (1.2.6-2) ...
Setting up libpthread-stubs0 (0.1-2) ...
Setting up libpthread-stubs0-dev (0.1-2) ...
Setting up libxcb1-dev (1.3-2) ...
Setting up libx11-dev (2:1.2.2-1) ...
Setting up libxt6 (1:1.0.5-3) ...
Setting up libxt-dev (1:1.0.5-3) ...
Setting up libhwloc4 (1.3-1) ...
Setting up procps (1:3.3.0-1) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode.
invoke-rc.d: policy-rc.d denied execution of start.
Setting up m4 (1.4.16-2) ...
Setting up autoconf (2.68-1) ...
Setting up autotools-dev (20110511.1) ...
Setting up automake (1:1.11.1-1) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode.
Setting up cdbs (0.4.100) ...
Setting up gcj-4.4-jre-headless (4.4.6-11) ...
gcj-dbtool succeeded unexpectedly
Setting up gcj-jre-headless (4:4.4.6-4) ...
Setting up java-common (0.45) ...
Setting up default-jre-headless (1:1.5-40) ...
Setting up gcj-4.4-jre (4.4.6-11) ...
Setting up gcj-jre (4:4.4.6-4) ...
Setting up default-jre (1:1.5-40) ...
Setting up gcj-4.4-jre-lib (4.4.6-11) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libecj-java (3.5.1-3) ...
Setting up ecj (3.5.1-3) ...
Setting up libecj-java-gcj (3.5.1-3) ...
gcj-dbtool-4.4 succeeded unexpectedly
Setting up ecj-gcj (3.5.1-3) ...
Setting up fastjar (2:0.98-3) ...
Setting up libantlr-java (2.7.7+dfsg-2) ...
Setting up diffstat (1.54-1) ...
Setting up gfortran-4.4 (4.4.6-11) ...
Setting up gfortran (4:4.4.6-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libxml2-dev (2.7.8.dfsg-5) ...
Setting up quilt (0.48-8) ...
Setting up txt2man (1.5.5-4) ...
Setting up hwloc-nox (1.3-1) ...
Setting up libhwloc-dev (1.3-1) ...
Setting up libgcj10-dev (4.4.6-11) ...
Setting up gcj-4.4-jdk (4.4.6-11) ...
Setting up gcj-jdk (4:4.4.6-4) ...
Setting up default-jdk (1:1.5-40) ...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
Starting
Starting 2
Done
fakeroot is already the newest version.
debhelper is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Copying back the cached apt archive contents
I: new cache content txt2man_1.5.5-4_all.deb added
I: new cache content java-common_0.45_all.deb added
I: new cache content libantlr-java_2.7.7+dfsg-2_all.deb added
I: new cache content gfortran-4.4_4.4.6-11_m68k.deb added
I: new cache content libgcj-common_1%3a4.4.6-4_all.deb added
I: new cache content libgfortran3_4.6.2-5_m68k.deb added
I: Copying source file
I: copying [/root/mpich2_1.4.1-1.dsc]
I: copying [/root/mpich2_1.4.1.orig.tar.gz]
I: copying [/root/mpich2_1.4.1-1.debian.tar.gz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Aug 27 07:22:43 2011 UTC using RSA key ID F4DFBE99
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mpich2_1.4.1-1.dsc
dpkg-source: info: extracting mpich2 in mpich2-1.4.1
dpkg-source: info: unpacking mpich2_1.4.1.orig.tar.gz
dpkg-source: info: unpacking mpich2_1.4.1-1.debian.tar.gz
dpkg-source: info: applying destdir.patch
I: Building the package
W: no hooks of type A found -- ignoring
I: Running cd tmp/buildd/*/ && dpkg-buildpackage -us -uc -B -m'Thorsten Glaser <tg at mirbsd.de>' -B -m'Thorsten Glaser <tg at mirbsd.de>' -B -rfakeroot
dpkg-buildpackage: source package mpich2
dpkg-buildpackage: source version 1.4.1-1
dpkg-source --before-build mpich2-1.4.1
dpkg-buildpackage: host architecture m68k
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: Entering directory `/tmp/buildd/mpich2-1.4.1'
make[1]: *** No rule to make target `distclean'.
make[1]: Leaving directory `/tmp/buildd/mpich2-1.4.1'
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
rmdir: failed to remove `.': Invalid argument
make: [makefile-clean] Error 1 (ignored)
for i in ./src/mpl/confdb/config.guess ./src/pm/hydra/mpl/confdb/config.guess ./src/pm/hydra/confdb/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess ./src/pm/hydra/tools/topo/plpa/plpa/config/config.guess ./src/mpix/armci/m4/config.guess ./src/mpe2/src/slog2sdk/trace_sample/config.guess ./src/mpe2/src/slog2sdk/config.guess ./src/mpe2/src/slog2sdk/trace_rlog/config.guess ./src/mpe2/config.guess ./src/mpi/romio/confdb/config.guess ./src/openpa/confdb/config.guess ./confdb/config.guess ./src/mpl/confdb/config.sub ./src/pm/hydra/mpl/confdb/config.sub ./src/pm/hydra/confdb/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub ./src/pm/hydra/tools/topo/plpa/plpa/config/config.sub ./src/mpix/armci/m4/config.sub ./src/mpe2/src/slog2sdk/trace_sample/config.sub ./src/mpe2/src/slog2sdk/config.sub ./src/mpe2/src/slog2sdk/trace_rlog/config.sub ./src/mpe2/config.sub ./src/mpi/romio/confdb/config.sub ./src/openpa/confdb/config.sub ./confdb/config.sub ; do
\
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
dh_clean
rm -f debian/mpich2.substvars
rm -f debian/mpich2.*.debhelper
rm -rf debian/mpich2/
rm -f debian/mpich2-doc.substvars
rm -f debian/mpich2-doc.*.debhelper
rm -rf debian/mpich2-doc/
rm -f debian/libmpich2-3.substvars
rm -f debian/libmpich2-3.*.debhelper
rm -rf debian/libmpich2-3/
rm -f debian/libmpich2-dev.substvars
rm -f debian/libmpich2-dev.*.debhelper
rm -rf debian/libmpich2-dev/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} \; \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
rm -f *-stamp
rm -f debian/stamp-autotools-files
rm -f debian/cdbs-install-list debian/cdbs-package-list debian/stamp-copyright-check
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/tmp/buildd/mpich2-1.4.1'
for i in ./src/mpl/confdb/config.guess ./src/pm/hydra/mpl/confdb/config.guess ./src/pm/hydra/confdb/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess ./src/pm/hydra/tools/topo/plpa/plpa/config/config.guess ./src/mpix/armci/m4/config.guess ./src/mpe2/src/slog2sdk/trace_sample/config.guess ./src/mpe2/src/slog2sdk/config.guess ./src/mpe2/src/slog2sdk/trace_rlog/config.guess ./src/mpe2/config.guess ./src/mpi/romio/confdb/config.guess ./src/openpa/confdb/config.guess ./confdb/config.guess ./src/mpl/confdb/config.sub ./src/pm/hydra/mpl/confdb/config.sub ./src/pm/hydra/confdb/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub ./src/pm/hydra/tools/topo/plpa/plpa/config/config.sub ./src/mpix/armci/m4/config.sub ./src/mpe2/src/slog2sdk/trace_sample/config.sub ./src/mpe2/src/slog2sdk/config.sub ./src/mpe2/src/slog2sdk/trace_rlog/config.sub ./src/mpe2/config.sub ./src/mpi/romio/confdb/config.sub ./src/openpa/confdb/config.sub ./confdb/config.sub ; do
\
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
make[1]: Leaving directory `/tmp/buildd/mpich2-1.4.1'
if [ -d "." ]; then \
cd . && QUILT_PATCHES=/tmp/buildd/mpich2-1.4.1/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
fi
Removing patch destdir.patch
Restoring Makefile.in
No patches applied
rm -rf ./.pc
rm -f debian/stamp-patch*
rm -rf lib
rm -f src/binding/f90/libmpichf90.la
rm -f bin/mpic++
rm -f bin/parkill
rm -f src/mpe2/src/slog2sdk/awt_color.jar
rm -f src/mpe2/src/slog2sdk/share/logfiles/fpilog.clog
rm -f src/mpe2/src/slog2sdk/share/logfiles/fpilog.slog2
rm -f src/mpe2/src/slog2sdk/trace_rlog/share/logfiles/barrier.rlog
rm -f src/mpe2/src/callstack/bin/bt2line
rm -f src/pm/hydra/config.status
rm -f .mpich2
find -name configure.lineno -exec rm {} \;
debian/rules build
test -x debian/rules
mkdir -p "."
WARNING: copyright-check disabled - touch debian/copyright_hints to enable.
touch debian/stamp-copyright-check
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/tmp/buildd/mpich2-1.4.1'
for i in ./src/mpl/confdb/config.guess ./src/pm/hydra/mpl/confdb/config.guess ./src/pm/hydra/confdb/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess ./src/pm/hydra/tools/topo/plpa/plpa/config/config.guess ./src/mpix/armci/m4/config.guess ./src/mpe2/src/slog2sdk/trace_sample/config.guess ./src/mpe2/src/slog2sdk/config.guess ./src/mpe2/src/slog2sdk/trace_rlog/config.guess ./src/mpe2/config.guess ./src/mpi/romio/confdb/config.guess ./src/openpa/confdb/config.guess ./confdb/config.guess ./src/mpl/confdb/config.sub ./src/pm/hydra/mpl/confdb/config.sub ./src/pm/hydra/confdb/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub ./src/pm/hydra/tools/topo/plpa/plpa/config/config.sub ./src/mpix/armci/m4/config.sub ./src/mpe2/src/slog2sdk/trace_sample/config.sub ./src/mpe2/src/slog2sdk/config.sub ./src/mpe2/src/slog2sdk/trace_rlog/config.sub ./src/mpe2/config.sub ./src/mpi/romio/confdb/config.sub ./src/openpa/confdb/config.sub ./confdb/config.sub ; do
\
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
make[1]: Leaving directory `/tmp/buildd/mpich2-1.4.1'
cd . && QUILT_PATCHES=/tmp/buildd/mpich2-1.4.1/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
Applying patch destdir.patch
patching file Makefile.in
Now at patch destdir.patch
touch debian/stamp-patched
/usr/bin/make -f debian/rules update-config
make[1]: Entering directory `/tmp/buildd/mpich2-1.4.1'
if test -e /usr/share/misc/config.guess ; then \
for i in ./src/mpl/confdb/config.guess ./src/pm/hydra/mpl/confdb/config.guess ./src/pm/hydra/confdb/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess ./src/pm/hydra/tools/topo/plpa/plpa/config/config.guess ./src/mpix/armci/m4/config.guess ./src/mpe2/src/slog2sdk/trace_sample/config.guess ./src/mpe2/src/slog2sdk/config.guess ./src/mpe2/src/slog2sdk/trace_rlog/config.guess ./src/mpe2/config.guess ./src/mpi/romio/confdb/config.guess ./src/openpa/confdb/config.guess ./confdb/config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./src/mpl/confdb/config.sub ./src/pm/hydra/mpl/confdb/config.sub ./src/pm/hydra/confdb/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub ./src/pm/hydra/tools/topo/plpa/plpa/config/config.sub ./src/mpix/armci/m4/config.sub ./src/mpe2/src/slog2sdk/trace_sample/config.sub ./src/mpe2/src/slog2sdk/config.sub ./src/mpe2/src/slog2sdk/trace_rlog/config.sub ./src/mpe2/config.sub ./src/mpi/romio/confdb/config.sub ./src/openpa/confdb/config.sub ./confdb/config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
make[1]: Leaving directory `/tmp/buildd/mpich2-1.4.1'
if test -e /usr/share/misc/config.guess ; then \
for i in ./src/mpl/confdb/config.guess ./src/pm/hydra/mpl/confdb/config.guess ./src/pm/hydra/confdb/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess ./src/pm/hydra/tools/topo/plpa/plpa/config/config.guess ./src/mpix/armci/m4/config.guess ./src/mpe2/src/slog2sdk/trace_sample/config.guess ./src/mpe2/src/slog2sdk/config.guess ./src/mpe2/src/slog2sdk/trace_rlog/config.guess ./src/mpe2/config.guess ./src/mpi/romio/confdb/config.guess ./src/openpa/confdb/config.guess ./confdb/config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./src/mpl/confdb/config.sub ./src/pm/hydra/mpl/confdb/config.sub ./src/pm/hydra/confdb/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub ./src/pm/hydra/tools/topo/plpa/plpa/config/config.sub ./src/mpix/armci/m4/config.sub ./src/mpe2/src/slog2sdk/trace_sample/config.sub ./src/mpe2/src/slog2sdk/config.sub ./src/mpe2/src/slog2sdk/trace_rlog/config.sub ./src/mpe2/config.sub ./src/mpi/romio/confdb/config.sub ./src/openpa/confdb/config.sub ./confdb/config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
touch debian/stamp-autotools-files
chmod a+x /tmp/buildd/mpich2-1.4.1/./configure
mkdir -p .
cd . && CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="" LDFLAGS="" MPICH2LIB_CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CFLAGS="" MPICH2LIB_CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="" MPICH2LIB_FFLAGS="" FFLAGS="" MPICH2LIB_FCFLAGS="" FCFLAGS="" FC="gfortran" /tmp/buildd/mpich2-1.4.1/./configure --build=m68k-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/mpich2" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --enable-shared --prefix
=/usr --enable-fc --disable-rpath --sysconfdir=/etc/mpich2 --includedir=/usr/include/mpich2 --docdir=/usr/share/doc/mpich2 --with-hwloc-prefix=system
Configuring MPICH2 version 1.4.1 with '--build=m68k-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/mpich2' '--srcdir=.' '--disable-maintainer-mode' '--disable-dependency-tracking' '--disable-silent-rules' '--enable-shared' '--prefix=/usr' '--enable-fc' '--disable-rpath' '--sysconfdir=/etc/mpich2' '--includedir=/usr/include/mpich2' '--docdir=/usr/share/doc/mpich2' '--with-hwloc-prefix=system' 'build_alias=m68k-linux-gnu' 'MPICH2LIB_CFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FCFLAGS=' 'CFLAGS=' 'LDFLAGS=' 'CPPFLAGS=' 'FFLAGS=' 'FC=gfortran' 'FCFLAGS=' 'CXXFLAGS='
Running on system: Linux aranym.mirbsd.org 3.0.0-2-atari #1 Fri Nov 4 06:46:40 UTC 2011 m68k GNU/Linux
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking build system type... m68k-unknown-linux-gnu
checking host system type... m68k-unknown-linux-gnu
checking for grep that handles long lines and -e... /bin/grep
checking for fgrep... /bin/grep -F
Creating shared libraries using GNU
checking whether C compiler accepts option -fPIC... yes
checking whether C compiler option -fPIC works with an invalid prototype program... yes
checking whether routines compiled with -fPIC can be linked with ones compiled without -fPIC... yes
Executing mpich2prereq in /tmp/buildd/mpich2-1.4.1/src/mpid/ch3 with
Executing mpich2prereq in /tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis
configure: ===== configuring src/mpl =====
configure: executing: /tmp/buildd/mpich2-1.4.1/src/mpl/configure '--build=m68k-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/mpich2' '--srcdir=.' '--disable-maintainer-mode' '--disable-dependency-tracking' '--disable-silent-rules' '--enable-shared' '--prefix=/usr' '--enable-fc' '--disable-rpath' '--sysconfdir=/etc/mpich2' '--includedir=/usr/include/mpich2' '--docdir=/usr/share/doc/mpich2' '--with-hwloc-prefix=system' 'build_alias=m68k-linux-gnu' 'MPICH2LIB_CFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FCFLAGS=' 'MPICH2LIB_FCFLAGS=' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat
-Wformat-security -Werror=format-security -Wall ' 'LDFLAGS= ' 'CPPFLAGS= ' 'FFLAGS= ' 'FC=gfortran' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ' 'CXXFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... m68k-unknown-linux-gnu
checking host system type... m68k-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) none
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for variable argument list macro functionality... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking helgrind.h usability... no
checking helgrind.h presence... no
checking for helgrind.h... no
checking valgrind/helgrind.h usability... no
checking valgrind/helgrind.h presence... no
checking for valgrind/helgrind.h... no
checking drd.h usability... no
checking drd.h presence... no
checking for drd.h... no
checking valgrind/drd.h usability... no
checking valgrind/drd.h presence... no
checking for valgrind/drd.h... no
checking whether the valgrind headers are broken or too old... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncmp... yes
checking whether strncmp needs a declaration... no
checking for putenv... yes
checking whether putenv needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
configure: ===== done with src/mpl configure =====
configure: ===== configuring src/openpa =====
configure: executing: /tmp/buildd/mpich2-1.4.1/src/openpa/configure --with-atomic-primitives=auto_allow_emulation '--build=m68k-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/mpich2' '--srcdir=.' '--disable-maintainer-mode' '--disable-dependency-tracking' '--disable-silent-rules' '--enable-shared' '--prefix=/usr' '--enable-fc' '--disable-rpath' '--sysconfdir=/etc/mpich2' '--includedir=/usr/include/mpich2' '--docdir=/usr/share/doc/mpich2' '--with-hwloc-prefix=system' 'build_alias=m68k-linux-gnu' 'MPICH2LIB_CFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FCFLAGS=' 'MPICH2LIB_FCFLAGS=' 'CFLAGS= -g -O2 -fst
ack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ' 'LDFLAGS= ' 'CPPFLAGS= -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/openpa/src -I/tmp/buildd/mpich2-1.4.1/src/openpa/src' 'FFLAGS= ' 'FC=gfortran' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ' 'CXXFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... m68k-unknown-linux-gnu
checking host system type... m68k-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) none
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86 primitives for pre-Pentium 4... no
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... no
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
configure: WARNING:
===================================================
Using locks to implement atomic primitives. This
will result in a substantial impact on performance.
Use this only for testing.
===================================================
checking whether to enable strict fairness checks... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
configure: ===== done with src/openpa configure =====
sourcing /tmp/buildd/mpich2-1.4.1/src/pm/hydra/mpich2prereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for ifort... no
checking for pgf77... no
checking for af77... no
checking for xlf... no
checking for frt... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for fort... no
checking for ifc... no
checking for efc... no
checking for ftn... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether Fortran 77 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/m68k-linux-gnu/4.4.6 -L/usr/lib/gcc/m68k-linux-gnu/4.4.6/../../../m68k-linux-gnu -L/usr/lib/gcc/m68k-linux-gnu/4.4.6/../../.. -L/lib/m68k-linux-gnu -L/usr/lib/m68k-linux-gnu -lgfortranbegin -lgfortran -lm
checking whether gfortran accepts the FLIBS found by autoconf... yes
checking whether gcc links with FLIBS found by autoconf... yes
checking whether Fortran 77 and C objects are compatible... yes
checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower uscore
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for libraries to link Fortran main with C stdio routines... none
checking whether Fortran init will work with C... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (gfortran ) works... yes
checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no
checking whether Fortran 90 compiler works with Fortran 77 compiler... yes
checking whether Fortran 77 accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking whether gfortran allows -shared -fPIC... yes
checking whether Fortran 77 compiler processes .F files with C preprocessor... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking whether the Fortran 90 compiler (gfortran ) works... yes
checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking whether Fortran 90 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
checking for Fortran 90 compiler vendor... gnu
checking for how to build shared libraries for Fortran 90... Compile with gfortran -shared -fPIC and link using path argument
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 4
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for killall... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... no
checking whether make allows comments in actions... no
configure: WARNING: Your make does not allow comments in target code.
Using this make may cause problems when building programs.
You should consider using gnumake instead.
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... yes
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... two
checking for max C struct floating point alignment... two
checking for max C struct alignment of structs with doubles... two
checking for max C struct floating point alignment with long doubles... two
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 12
checking size of void *... 4
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 12
checking size of long_int... 8
checking size of short_int... 6
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 24
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking for size of Fortran type integer... 4
checking for size of Fortran type real... 4
checking for size of Fortran type double precision... 8
checking whether integer*1 is supported... yes
checking whether integer*2 is supported... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... no
checking for C type matching Fortran integer... int
checking for size of MPI_Status... 20
checking for values of Fortran logicals... True is 1 and False is 0
checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for multiple __attribute__((alias)) support... yes
checking the minimum alignment of Fortran common block of 1 integers... 4
checking the minimum alignment of Fortran common block of 5 integers... 4, too small! reset to 32
checking for Fortran 90 integer kind for 4-byte integers... 4
checking for Fortran 90 integer kind for 8-byte integers... 8
checking if real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking how to run the C++ preprocessor... c++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 24
checking if char * pointers use byte addresses... yes
checking for alignment restrictions on ... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 56
checking for gcc __asm__ and pentium cmpxchgl instruction... no
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for ANSI C header files... (cached) yes
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking string.h usability... yes
checking string.h presence... yes
checking for string.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... no
checking whether strerror_r needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for qsort... yes
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
sourcing /tmp/buildd/mpich2-1.4.1/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes
checking for thread local storage specifier... __thread
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: ===== configuring src/mpid/ch3 =====
configure: executing: /tmp/buildd/mpich2-1.4.1/src/mpid/ch3/configure '--build=m68k-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/mpich2' '--srcdir=.' '--disable-maintainer-mode' '--disable-dependency-tracking' '--disable-silent-rules' '--enable-shared' '--prefix=/usr' '--enable-fc' '--disable-rpath' '--sysconfdir=/etc/mpich2' '--includedir=/usr/include/mpich2' '--docdir=/usr/share/doc/mpich2' '--with-hwloc-prefix=system' 'build_alias=m68k-linux-gnu' 'MPICH2LIB_CFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FFLAGS=' 'MPICH2LIB_FCFLAGS=' 'MPICH2LIB_FCFLAGS=' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wf
ormat -Wformat-security -Werror=format-security -Wall -O2' 'LDFLAGS= ' 'CPPFLAGS= -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/openpa/src -I/tmp/buildd/mpich2-1.4.1/src/openpa/src -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/datatype -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/datatype -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/locks -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/locks -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/
tmp/buildd/mpich2-1.4.1/src/util/wrappers -I/tmp/buildd/mpich2-1.4.1/src/util/wrappers' 'FFLAGS= -O2' 'FC=gfortran' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -O2' 'CXXFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -O2' --disable-option-checking
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... no
checking whether make allows comments in actions... no
configure: WARNING: Your make does not allow comments in target code.
Using this make may cause problems when building programs.
You should consider using gnumake instead.
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... no
checking uuid/uuid.h presence... no
checking for uuid/uuid.h... no
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... yes
checking whether we can use struct ifconf... yes
configure: ===== configuring channels/nemesis =====
configure: executing: /tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/configure '--build=m68k-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/mpich2' '--srcdir=.' '--disable-maintainer-mode' '--disable-dependency-tracking' '--disable-silent-rules' '--enable-shared' '--prefix=/usr' '--enable-fc' '--disable-rpath' '--sysconfdir=/etc/mpich2' '--includedir=/usr/include/mpich2' '--docdir=/usr/share/doc/mpich2' '--with-hwloc-prefix=system' 'build_alias=m68k-linux-gnu' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -O2' 'MPICH2LIB_CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall' 'MPICH2LIB_FFLAGS=' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -W
all -O2' 'LDFLAGS= ' 'CPPFLAGS= -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/mpl/include -I/tmp/buildd/mpich2-1.4.1/src/openpa/src -I/tmp/buildd/mpich2-1.4.1/src/openpa/src -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/datatype -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/datatype -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/locks -I/tmp/buildd/mpich2-1.4.1/src/mpid/common/locks -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/buildd/mpich2-1.4.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/buildd/mpich2-1.4.1/src/util/wrappers -I/tmp/bui
ldd/mpich2-1.4.1/src/util/wrappers' 'FFLAGS= -O2' 'FC=gfortran' 'CFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -O2' 'CXXFLAGS= -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -O2' '--disable-option-checking' 'CC=gcc' 'LIBS=-lpthread ' --disable-option-checking
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... no
checking whether make allows comments in actions... no
configure: WARNING: Your make does not allow comments in target code.
Using this make may cause problems when building programs.
You should consider using gnumake instead.
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for signal... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... no
configure: error:
The nemesis channel was selected yet no native atomic primitives are
available on this platform. OpenPA can emulate atomic primitives using
locks by specifying --with-atomic-primitives=no but performance will be
very poor. This override should only be specified for correctness
testing purposes.
configure: error: channels/nemesis configure failed
configure: error: src/mpid/ch3 configure failed
make: *** [debian/stamp-autotools] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting dev/pts filesystem
I: unmounting proc filesystem
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