Bug#715107: Broken library symlink detected in libptscotch-dev
David Steele
dsteele at gmail.com
Sat Jul 6 05:01:15 UTC 2013
Package: libptscotch-dev
Version: 5.1.12b.dfsg-2
Severity: serious
User: debian-qa at lists.debian.org
Usertags: piuparts, broken-symlink, broken-symlink-shared-library
Hi,
During a test with piuparts, I noticed your package is
responsible for the presence of broken symlinks involving
a shared library. Such failures may indicate a significant
problem with the package.
Usually this is caused by a missing Depends. It may also be
triggered if a Recommended or reverse dependency package
owning the symlink target file is not yet installed. This type
of failure mode needs to be eliminated so that other symlink
problems become more visible. In this case, the problem can be
resolved by creating a trigger for the target file. See the
dpkg triggers documentation[1] and an example on the net[2] for
implementation details.
This is being filed as Serious because it represents a violation
of Policy. Section 8 states "Packages containing shared
libraries must be constructed with a little care to make sure
that the shared library is always available".
A link to the log containing the indicated broken symlinks can
be found on piuparts.debian.org[3]. Search for "Warn: Broken
Symlinks" to see the failure point. A log showing the broken
symlink as an error is appended.
The log contains the following broken symlinks:
/usr/lib/scotch-int32/libptscotchparmetis.so
-> libptscotchparmetis-5.1.so
/usr/lib/scotch-int32/libptscotch.so
-> libptscotch-5.1.so
/usr/lib/scotch-int32/libptesmumps.so
-> libptesmumps-5.1.so
/usr/lib/scotch-int32/libptscotcherr.so
-> libptscotcherr-5.1.so
/usr/lib/scotch-int32/libptscotcherrexit.so
-> libptscotcherrexit-5.1.so
/usr/lib/scotch-int64/libptscotchparmetis.so
-> libptscotchparmetis-5.1.so
/usr/lib/scotch-int64/libptscotch.so
-> libptscotch-5.1.so
/usr/lib/scotch-int64/libptesmumps.so
-> libptesmumps-5.1.so
/usr/lib/scotch-int64/libptscotcherr.so
-> libptscotcherr-5.1.so
/usr/lib/scotch-int64/libptscotcherrexit.so
-> libptscotcherrexit-5.1.so
/usr/lib/scotch-long/libptscotchparmetis.so
-> libptscotchparmetis-5.1.so
/usr/lib/scotch-long/libptscotch.so
-> libptscotch-5.1.so
/usr/lib/scotch-long/libptesmumps.so
-> libptesmumps-5.1.so
/usr/lib/scotch-long/libptscotcherr.so
-> libptscotcherr-5.1.so
/usr/lib/scotch-long/libptscotcherrexit.so
-> libptscotcherrexit-5.1.so
[1] - file:///usr/share/doc/dpkg-dev/triggers.txt.gz
[2] - http://www.seanius.net/blog/2009/09/dpkg-triggers-howto/
[3] - http://piuparts.debian.org/sid/broken_symlinks_issue.html
----------
Start: 2013-07-05 21:22:18 EST
Package: libptscotch-dev
Source: scotch
Version: 5.1.12b.dfsg-2
Installed-Size: 25001
Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
Architecture: amd64
Depends: libptscotch-5.1 (= 5.1.12b.dfsg-2), libscotch-dev (= 5.1.12b.dfsg-2), mpi-default-dev, zlib1g-dev
Description: MPI programs and libraries for graph, mesh and hypergraph partitioning
Homepage: http://www.labri.fr/perso/pelegrin/scotch/
Description-md5: 0eafb053278f9be78b326b70f40b1fd4
Tag: devel::library, role::devel-lib
Section: libdevel
Priority: extra
Filename: pool/main/s/scotch/libptscotch-dev_5.1.12b.dfsg-2_amd64.deb
Size: 6607682
MD5sum: 9174d368f4f5cfb40057aeb4253abd99
SHA1: 5075917300f70e1b8fab2bb1d0b6e5ffaca61443
SHA256: ab92fe817268c0a9e0816ee012e8b0ebf41297223a7ab6c37189b365b7a0858d
Executing: sudo piuparts --scriptsdir /etc/piuparts/scripts --skip-logrotatefiles-test --warn-on-others --fail-on-broken-symlinks --mirror http://127.0.0.1/debian --tmpdir /var/tmp --arch amd64 -b /var/cache/piuparts/basetgz/sid.tar.gz -d sid --no-upgrade-test --apt libptscotch-dev=5.1.12b.dfsg-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 0.54~201306172307~0.53-14-ge8900a0 starting up.
0m0.0s INFO: Command line arguments: '/usr/sbin/piuparts' '--scriptsdir' '/etc/piuparts/scripts' '--skip-logrotatefiles-test' '--warn-on-others' '--fail-on-broken-symlinks' '--mirror' 'http://127.0.0.1/debian' '--tmpdir' '/var/tmp' '--arch' 'amd64' '-b' '/var/cache/piuparts/basetgz/sid.tar.gz' '-d' 'sid' '--no-upgrade-test' '--apt' 'libptscotch-dev=5.1.12b.dfsg-2'
0m0.0s INFO: Running on: Linux debian-testing 3.9-1-amd64 #1 SMP Debian 3.9.8-1 x86_64
0m0.0s DEBUG: Created temporary directory /var/tmp/tmprqEfdN
0m0.0s DEBUG: Unpacking /var/cache/piuparts/basetgz/sid.tar.gz into /var/tmp/tmprqEfdN
0m0.0s DEBUG: Starting command: ['tar', '-C', '/var/tmp/tmprqEfdN', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Command ok: ['tar', '-C', '/var/tmp/tmprqEfdN', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: sources.list:
deb http://127.0.0.1/debian sid main
deb http://127.0.0.1/debian sid contrib
deb http://127.0.0.1/debian sid non-free
0m1.4s DEBUG: Created policy-rc.d and chmodded it.
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'update']
0m6.7s DUMP:
Get:1 http://127.0.0.1 sid InRelease [205 kB]
Get:2 http://127.0.0.1 sid/main amd64 Packages [6398 kB]
Get:3 http://127.0.0.1 sid/contrib amd64 Packages [48.5 kB]
Get:4 http://127.0.0.1 sid/non-free amd64 Packages [84.6 kB]
Get:5 http://127.0.0.1 sid/contrib Translation-en [39.9 kB]
Get:6 http://127.0.0.1 sid/main Translation-en [4246 kB]
Get:7 http://127.0.0.1 sid/non-free Translation-en [72.7 kB]
Fetched 11.1 MB in 3s (2900 kB/s)
Reading package lists...
0m6.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'update']
0m6.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.2s DUMP:
Reading package lists...
Building dependency tree...
The following packages will be upgraded:
apt libapt-pkg4.12 libc-bin libc6 multiarch-support
5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 8332 kB of archives.
After this operation, 132 kB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libc-bin amd64 2.17-7 [1298 kB]
Get:2 http://127.0.0.1/debian/ sid/main libc6 amd64 2.17-7 [4624 kB]
Get:3 http://127.0.0.1/debian/ sid/main libapt-pkg4.12 amd64 0.9.9 [926 kB]
Get:4 http://127.0.0.1/debian/ sid/main apt amd64 0.9.9 [1323 kB]
Get:5 http://127.0.0.1/debian/ sid/main multiarch-support amd64 2.17-7 [160 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8332 kB in 0s (40.8 MB/s)
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libc-bin 2.17-6 (using .../libc-bin_2.17-7_amd64.deb) ...
Unpacking replacement libc-bin ...
Setting up libc-bin (2.17-7) ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libc6:amd64 2.17-6 (using .../libc6_2.17-7_amd64.deb) ...
Unpacking replacement libc6:amd64 ...
Setting up libc6:amd64 (2.17-7) ...
Processing triggers for libc-bin ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace libapt-pkg4.12:amd64 0.9.8.2 (using .../libapt-pkg4.12_0.9.9_amd64.deb) ...
Unpacking replacement libapt-pkg4.12:amd64 ...
Setting up libapt-pkg4.12:amd64 (0.9.9) ...
Processing triggers for libc-bin ...
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace apt 0.9.8.2 (using .../archives/apt_0.9.9_amd64.deb) ...
Unpacking replacement apt ...
Setting up apt (0.9.9) ...
gpg: key B98321F9: "Squeeze Stable Release Key <debian-release at lists.debian.org>" not changed
gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) <ftpmaster at debian.org>" not changed
gpg: key 65FFB764: "Wheezy Stable Release Key <debian-release at lists.debian.org>" not changed
gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) <ftpmaster at debian.org>" not changed
gpg: Total number processed: 4
gpg: unchanged: 4
(Reading database ... 6639 files and directories currently installed.)
Preparing to replace multiarch-support 2.17-6 (using .../multiarch-support_2.17-7_amd64.deb) ...
Unpacking replacement multiarch-support ...
Setting up multiarch-support (2.17-7) ...
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /var/tmp/tmprqEfdN/tmp/scripts/
0m8.2s INFO: Running scripts post_setup
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.2s DUMP:
Disabling /home
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.2s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m8.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.4s DUMP:
apt install
base-files install
base-passwd install
bash install
bsdutils install
coreutils install
dash install
debconf install
debconf-i18n install
debian-archive-keyring install
debianutils install
diffutils install
dpkg install
e2fslibs:amd64 install
e2fsprogs install
eatmydata install
findutils install
gcc-4.7-base:amd64 install
gcc-4.8-base:amd64 install
gnupg install
gpgv install
grep install
gzip install
hostname install
initscripts install
insserv install
libacl1:amd64 install
libapt-pkg4.12:amd64 install
libattr1:amd64 install
libblkid1:amd64 install
libbz2-1.0:amd64 install
libc-bin install
libc6:amd64 install
libcap2:amd64 install
libcomerr2:amd64 install
libdb5.1:amd64 install
libgcc1:amd64 install
liblocale-gettext-perl install
liblzma5:amd64 install
libmount1 install
libncurses5:amd64 install
libpam-modules:amd64 install
libpam-modules-bin install
libpam-runtime install
libpam0g:amd64 install
libpcre3:amd64 install
libreadline6:amd64 install
libselinux1:amd64 install
libsemanage-common install
libsemanage1:amd64 install
libsepol1:amd64 install
libslang2:amd64 install
libss2:amd64 install
libstdc++6:amd64 install
libtext-charwidth-perl install
libtext-iconv-perl install
libtext-wrapi18n-perl install
libtinfo5:amd64 install
libusb-0.1-4:amd64 install
libustr-1.0-1:amd64 install
libuuid1:amd64 install
login install
lsb-base install
mawk install
mount install
multiarch-support install
ncurses-base install
ncurses-bin install
passwd install
perl-base install
readline-common install
sed install
sensible-utils install
sysv-rc install
sysvinit install
sysvinit-utils install
tar install
tzdata install
util-linux install
zlib1g:amd64 install
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg-divert', '--list']
0m9.4s DUMP:
diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash
diversion of /bin/sh to /bin/sh.distrib by dash
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg-divert', '--list']
0m9.4s INFO: Starting install/purge
0m9.4s INFO: apt-cache does not know about any of the requested packages
0m9.4s INFO: Running scripts pre_test
0m9.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.4s DUMP:
Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully
0m9.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m10.7s DEBUG: No broken symlinks as far as we can find.
0m10.7s INFO: Running scripts pre_install
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'show', 'libptscotch-dev']
0m12.1s DUMP:
Package: libptscotch-dev
Source: scotch
Version: 5.1.12b.dfsg-2
Installed-Size: 25001
Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
Architecture: amd64
Depends: libptscotch-5.1 (= 5.1.12b.dfsg-2), libscotch-dev (= 5.1.12b.dfsg-2), mpi-default-dev, zlib1g-dev
Description-en: MPI programs and libraries for graph, mesh and hypergraph partitioning
Headers and libraries package for PT-SCOTCH, the MPI version of scotch, which
is a set of programs and libraries which implement the static mapping and
sparse matrix reordering algorithms developed within the SCOTCH project.
Description-md5: 0eafb053278f9be78b326b70f40b1fd4
Homepage: http://www.labri.fr/perso/pelegrin/scotch/
Description-md5: 0eafb053278f9be78b326b70f40b1fd4
Tag: devel::library, role::devel-lib
Section: libdevel
Priority: extra
Filename: pool/main/s/scotch/libptscotch-dev_5.1.12b.dfsg-2_amd64.deb
Size: 6607682
MD5sum: 9174d368f4f5cfb40057aeb4253abd99
SHA1: 5075917300f70e1b8fab2bb1d0b6e5ffaca61443
SHA256: ab92fe817268c0a9e0816ee012e8b0ebf41297223a7ab6c37189b365b7a0858d
0m12.1s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'show', 'libptscotch-dev']
0m12.1s DEBUG: Starting command: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmpRfFpH_/piuparts-depends-dummy']
0m12.1s DUMP:
dpkg-deb: warning: not checking contents of control area
dpkg-deb: building an unknown package in '/var/tmp/tmpRfFpH_/piuparts-depends-dummy.deb'.
0m12.1s DEBUG: Command ok: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmpRfFpH_/piuparts-depends-dummy']
0m12.1s DEBUG: Copying /var/tmp/tmpRfFpH_/piuparts-depends-dummy.deb to /var/tmp/tmprqEfdN/tmp
0m12.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.1s DUMP:
Selecting previously unselected package piuparts-depends-dummy.
(Reading database ... 6639 files and directories currently installed.)
Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ...
dpkg: dependency problems prevent configuration of piuparts-depends-dummy:
piuparts-depends-dummy depends on libptscotch-5.1 (= 5.1.12b.dfsg-2); however:
Package libptscotch-5.1 is not installed.
piuparts-depends-dummy depends on libscotch-dev (= 5.1.12b.dfsg-2); however:
Package libscotch-dev is not installed.
piuparts-depends-dummy depends on mpi-default-dev; however:
Package mpi-default-dev is not installed.
piuparts-depends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
dpkg: error processing piuparts-depends-dummy (--install):
dependency problems - leaving unconfigured
Errors were encountered while processing:
piuparts-depends-dummy
0m12.1s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies... Done
The following extra packages will be installed:
adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
libnuma1 libopenmpi-dev libopenmpi1.3 libptscotch-5.1 libquadmath0
libscotch-5.1 libscotch-dev libtorque2 linux-libc-dev mpi-default-dev
openmpi-common zlib1g-dev
Suggested packages:
perl-modules glibc-doc
Recommended packages:
manpages-dev gcc c-compiler
The following NEW packages will be installed:
adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
libnuma1 libopenmpi-dev libopenmpi1.3 libptscotch-5.1 libquadmath0
libscotch-5.1 libscotch-dev libtorque2 linux-libc-dev mpi-default-dev
openmpi-common zlib1g-dev
0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 15.8 MB of archives.
After this operation, 56.9 MB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libquadmath0 amd64 4.8.1-5 [138 kB]
Get:2 http://127.0.0.1/debian/ sid/main libgfortran3 amd64 4.8.1-5 [345 kB]
Get:3 http://127.0.0.1/debian/ sid/main adduser all 3.113+nmu3 [264 kB]
Get:4 http://127.0.0.1/debian/ sid/main libibverbs1 amd64 1.1.7-1 [35.4 kB]
Get:5 http://127.0.0.1/debian/ sid/main libnuma1 amd64 2.0.8-3 [34.5 kB]
Get:6 http://127.0.0.1/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB]
Get:7 http://127.0.0.1/debian/ sid/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB]
Get:8 http://127.0.0.1/debian/ sid/main libscotch-5.1 amd64 5.1.12b.dfsg-2 [808 kB]
Get:9 http://127.0.0.1/debian/ sid/main libptscotch-5.1 amd64 5.1.12b.dfsg-2 [1299 kB]
Get:10 http://127.0.0.1/debian/ sid/main openmpi-common all 1.4.5-1 [101 kB]
Get:11 http://127.0.0.1/debian/ sid/main libibverbs-dev amd64 1.1.7-1 [86.1 kB]
Get:12 http://127.0.0.1/debian/ sid/main libopenmpi-dev amd64 1.4.5-1 [2778 kB]
Get:13 http://127.0.0.1/debian/ sid/main mpi-default-dev amd64 1.0.1 [3604 B]
Get:14 http://127.0.0.1/debian/ sid/main libc-dev-bin amd64 2.17-7 [233 kB]
Get:15 http://127.0.0.1/debian/ sid/main linux-libc-dev amd64 3.9.8-1 [854 kB]
Get:16 http://127.0.0.1/debian/ sid/main libc6-dev amd64 2.17-7 [3140 kB]
Get:17 http://127.0.0.1/debian/ sid/main zlib1g-dev amd64 1:1.2.8.dfsg-1 [217 kB]
Get:18 http://127.0.0.1/debian/ sid/main libscotch-dev amd64 5.1.12b.dfsg-2 [3885 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 15.8 MB in 0s (28.5 MB/s)
Selecting previously unselected package libquadmath0:amd64.
(Reading database ... 6639 files and directories currently installed.)
Unpacking libquadmath0:amd64 (from .../libquadmath0_4.8.1-5_amd64.deb) ...
Selecting previously unselected package libgfortran3:amd64.
Unpacking libgfortran3:amd64 (from .../libgfortran3_4.8.1-5_amd64.deb) ...
Selecting previously unselected package adduser.
Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ...
Selecting previously unselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.7-1_amd64.deb) ...
Selecting previously unselected package libnuma1.
Unpacking libnuma1 (from .../libnuma1_2.0.8-3_amd64.deb) ...
Selecting previously unselected package libtorque2.
Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_amd64.deb) ...
Selecting previously unselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ...
Selecting previously unselected package libscotch-5.1.
Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ...
Selecting previously unselected package libptscotch-5.1.
Unpacking libptscotch-5.1 (from .../libptscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ...
Selecting previously unselected package openmpi-common.
Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ...
Selecting previously unselected package libibverbs-dev.
Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.7-1_amd64.deb) ...
Selecting previously unselected package libopenmpi-dev.
Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ...
Selecting previously unselected package mpi-default-dev.
Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ...
Selecting previously unselected package libc-dev-bin.
Unpacking libc-dev-bin (from .../libc-dev-bin_2.17-7_amd64.deb) ...
Selecting previously unselected package linux-libc-dev:amd64.
Unpacking linux-libc-dev:amd64 (from .../linux-libc-dev_3.9.8-1_amd64.deb) ...
Selecting previously unselected package libc6-dev:amd64.
Unpacking libc6-dev:amd64 (from .../libc6-dev_2.17-7_amd64.deb) ...
Selecting previously unselected package zlib1g-dev:amd64.
Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_amd64.deb) ...
Selecting previously unselected package libscotch-dev.
Unpacking libscotch-dev (from .../libscotch-dev_5.1.12b.dfsg-2_amd64.deb) ...
Setting up libquadmath0:amd64 (4.8.1-5) ...
Setting up libgfortran3:amd64 (4.8.1-5) ...
Setting up adduser (3.113+nmu3) ...
Setting up libibverbs1 (1.1.7-1) ...
Setting up libnuma1 (2.0.8-3) ...
Setting up libtorque2 (2.4.16+dfsg-1) ...
Setting up libopenmpi1.3 (1.4.5-1) ...
Setting up libscotch-5.1 (5.1.12b.dfsg-2) ...
Setting up libptscotch-5.1 (5.1.12b.dfsg-2) ...
Setting up openmpi-common (1.4.5-1) ...
Setting up libibverbs-dev (1.1.7-1) ...
Setting up libopenmpi-dev (1.4.5-1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.1) ...
Setting up libc-dev-bin (2.17-7) ...
Setting up linux-libc-dev:amd64 (3.9.8-1) ...
Setting up libc6-dev:amd64 (2.17-7) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1) ...
Setting up libscotch-dev (5.1.12b.dfsg-2) ...
Setting up piuparts-depends-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok
0m14.3s DEBUG: Removing /var/tmp/tmprqEfdN/tmp/piuparts-depends-dummy.deb
0m14.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.3s DUMP:
(Reading database ... 8971 files and directories currently installed.)
Removing piuparts-depends-dummy ...
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', 'clean']
0m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m15.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m17.0s DEBUG: No broken symlinks as far as we can find.
0m17.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy']
0m18.3s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://127.0.0.1/debian/ sid/non-free Translation-en
500 http://127.0.0.1/debian/ sid/main Translation-en
500 http://127.0.0.1/debian/ sid/contrib Translation-en
500 http://127.0.0.1/debian/ sid/non-free amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=non-free
origin 127.0.0.1
500 http://127.0.0.1/debian/ sid/contrib amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=contrib
origin 127.0.0.1
500 http://127.0.0.1/debian/ sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main
origin 127.0.0.1
Pinned packages:
0m18.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy']
0m18.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy', 'libptscotch-dev']
0m18.3s DUMP:
libptscotch-dev:
Installed: (none)
Candidate: 5.1.12b.dfsg-2
Version table:
5.1.12b.dfsg-2 0
500 http://127.0.0.1/debian/ sid/main amd64 Packages
0m18.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-cache', 'policy', 'libptscotch-dev']
0m18.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-y', 'install', 'libptscotch-dev=5.1.12b.dfsg-2']
0m19.2s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
libptscotch-dev
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 6608 kB of archives.
After this operation, 25.6 MB of additional disk space will be used.
Get:1 http://127.0.0.1/debian/ sid/main libptscotch-dev amd64 5.1.12b.dfsg-2 [6608 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 6608 kB in 0s (32.8 MB/s)
Selecting previously unselected package libptscotch-dev.
(Reading database ... 8971 files and directories currently installed.)
Unpacking libptscotch-dev (from .../libptscotch-dev_5.1.12b.dfsg-2_amd64.deb) ...
Setting up libptscotch-dev (5.1.12b.dfsg-2) ...
0m19.2s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'apt-get', '-y', 'install', 'libptscotch-dev=5.1.12b.dfsg-2']
0m19.2s INFO: Running scripts post_install
0m19.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m19.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmprqEfdN']
0m21.0s ERROR: FAIL: Broken symlinks:
/usr/lib/scotch-int32/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
/usr/lib/scotch-int32/libptscotch.so -> libptscotch-5.1.so
/usr/lib/scotch-int32/libptesmumps.so -> libptesmumps-5.1.so
/usr/lib/scotch-int32/libptscotcherr.so -> libptscotcherr-5.1.so
/usr/lib/scotch-int32/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
/usr/lib/scotch-int64/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
/usr/lib/scotch-int64/libptscotch.so -> libptscotch-5.1.so
/usr/lib/scotch-int64/libptesmumps.so -> libptesmumps-5.1.so
/usr/lib/scotch-int64/libptscotcherr.so -> libptscotcherr-5.1.so
/usr/lib/scotch-int64/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
/usr/lib/scotch-long/libptscotchparmetis.so -> libptscotchparmetis-5.1.so
/usr/lib/scotch-long/libptscotch.so -> libptscotch-5.1.so
/usr/lib/scotch-long/libptesmumps.so -> libptesmumps-5.1.so
/usr/lib/scotch-long/libptscotcherr.so -> libptscotcherr-5.1.so
/usr/lib/scotch-long/libptscotcherrexit.so -> libptscotcherrexit-5.1.so
0m21.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'umount', '/proc']
0m21.6s DEBUG: Command ok: ['chroot', '/var/tmp/tmprqEfdN', 'eatmydata', 'umount', '/proc']
0m21.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/var/tmp/tmprqEfdN']
0m21.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/var/tmp/tmprqEfdN']
0m21.7s DEBUG: Removed directory tree at /var/tmp/tmprqEfdN
0m21.7s ERROR: piuparts run ends.
ret=1
End: 2013-07-05 21:22:40 EST
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