Bug#782029: dolfin-bin: FEniCS/DOLFIN fails to compile Python dolfin.Expression()
Jan Medlock
medlock-debian at turboshower.net
Mon Apr 6 17:42:28 UTC 2015
Package: dolfin-bin
Version: 1.5.0-1
Severity: important
Dear Maintainer,
I'm trying to work through the first example at
http://fenicsproject.org/documentation/tutorial/fundamentals.html#implementation-1
(A minimal script of the first 4 lines of that example is attached.)
The compilation of the python.Expression() fails:
$ python fenics_test.py
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
In instant.recompile: The module did not compile with command 'make VERBOSE=1', see '/home/medlock/.instant/error/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/compile.log'
Traceback (most recent call last):
File "fenics_test.py", line 5, in <module>
u0 = Expression('1 + x[0]*x[0] + 2*x[1]*x[1]')
File "/usr/lib/python2.7/dist-packages/dolfin/functions/expression.py", line 602, in __new__
mpi_comm=mpi_comm)
File "/usr/lib/python2.7/dist-packages/dolfin/compilemodules/expressions.py", line 217, in compile_expressions
mpi_comm=mpi_comm)
File "/usr/lib/python2.7/dist-packages/dolfin/compilemodules/expressions.py", line 145, in compile_expression_code
mpi_comm=mpi_comm)
File "/usr/lib/python2.7/dist-packages/dolfin/compilemodules/jit.py", line 64, in mpi_jit
return local_jit(*args, **kwargs)
File "/usr/lib/python2.7/dist-packages/dolfin/compilemodules/compilemodule.py", line 458, in compile_extension_module
**instant_kwargs)
File "/usr/lib/python2.7/dist-packages/instant/build.py", line 563, in build_module
recompile(modulename, module_path, new_compilation_checksum, build_system)
File "/usr/lib/python2.7/dist-packages/instant/build.py", line 165, in recompile
instant_error(msg % (cmd, compile_log_filename_dest))
File "/usr/lib/python2.7/dist-packages/instant/output.py", line 85, in instant_error
raise RuntimeError(text)
RuntimeError: In instant.recompile: The module did not compile with command 'make VERBOSE=1', see '/home/medlock/.instant/error/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/compile.log'
This seems to be the crucial line of the ../compile.log (full log attached):
make[2]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libumfpack.so', needed by '_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.so'. Stop.
Looking at
~/.instant/error/dolfin_compile_code_*/CMakeFiles/_dolfin_compile_code_*.dir/build.make
(attached) there is indeed a line for
/usr/lib/x86_64-linux-gnu/libumfpack.so, and other .so files
(libamd.so, libcholmod.so, ...) from libsuitesparse.
I see that I have libsuitesparse-metis-dev installed instead of
libsuitesparse-dev. The former puts these files in /usr/lib, while
the latter uses /usr/lib/$ARCH.
Any good ideas for fixing this? Should dolfin work with both
libsuitesparse-dev and libsuitesparse-metis-dev? Perhaps this bug
belongs to libsuitesparse-metis-dev.
Thanks,
JM
*** Reporter, please consider answering these questions, where appropriate ***
* What led up to the situation?
* What exactly did you do (or not do) that was effective (or
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-- System Information:
Debian Release: 8.0
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 3.16.0-4-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages dolfin-bin depends on:
ii python 2.7.9-1
ii python-dolfin 1.5.0-1
ii python-numpy 1:1.8.2-2
pn python:any <none>
dolfin-bin recommends no packages.
dolfin-bin suggests no packages.
-- no debconf information
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-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.9.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found SWIG: /usr/bin/swig (found version "2.0.12")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DEBUG
-- Build files have been written to: /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15
/usr/bin/cmake -H/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 -B/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
make -f CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/build.make CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/depend
make[2]: Entering directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
/usr/bin/cmake -E cmake_progress_report /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles 1
[ 50%] Swig source
/usr/bin/cmake -E make_directory /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15
/usr/bin/swig -python -module dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -DDOLFIN_VERSION="1.5.0" -DBOOST_UBLAS_NDEBUG -DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_HDF5 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -D_FORTIFY_SOURCE=2 -DHAS_SLEPC -DHAS_PETSC -DENABLE_PETSC_SNES -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_ZLIB -DHAS_MPI -DHAS_OPENMP -DHAS_QT4 -DHAS_VTK -DHAS_QVTK -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -c++ -fcompact -O -I. -small -outdir /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 -c++ -I/usr/include -I/usr/include/libxml2 -I/usr/local/include -I/usr/lib/slepcdir/3.4.2 -I/usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/include -I/usr/
lib/slepcdir/3.4.2/include -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/eigen3 -I/usr/include/hdf5/openmpi -I/usr/lib/petscdir/3.4.2/include -I/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/lib/x86_64-linux-gnu/hdf5/openmpi/include -I/usr/include/qt4 -I/usr/include/vtk-5.8 -I/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/. -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -I/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 -o /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15PYTHON_wrap.cxx /tmp/user/1000/
tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i
/usr/include/dolfin/la/LinearAlgebraObject.h:36: Warning 520: Derived class 'LinearAlgebraObject' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:63: Warning 402: Base class 'Hierarchical< Function >' is incomplete.
/usr/include/dolfin/swig/function/pre.i:219: Warning 402: Only forward declaration 'Hierarchical< Function >' was found.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::GenericFunction' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'ufc::function' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/FunctionSpace.h:53: Warning 402: Base class 'Hierarchical< FunctionSpace >' is incomplete.
/usr/include/dolfin/swig/function/pre.i:218: Warning 402: Only forward declaration 'Hierarchical< FunctionSpace >' was found.
/usr/include/dolfin/function/FunctionSpace.h:54: Warning 520: Derived class 'FunctionSpace' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:170: Warning 315: Nothing known about 'std::cos'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:171: Warning 315: Nothing known about 'std::sin'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:172: Warning 315: Nothing known about 'std::tan'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:173: Warning 315: Nothing known about 'std::acos'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:174: Warning 315: Nothing known about 'std::asin'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:175: Warning 315: Nothing known about 'std::atan'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:176: Warning 315: Nothing known about 'std::atan2'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:177: Warning 315: Nothing known about 'std::cosh'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:178: Warning 315: Nothing known about 'std::sinh'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:179: Warning 315: Nothing known about 'std::tanh'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:180: Warning 315: Nothing known about 'std::exp'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:181: Warning 315: Nothing known about 'std::frexp'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:182: Warning 315: Nothing known about 'std::ldexp'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:183: Warning 315: Nothing known about 'std::log'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:184: Warning 315: Nothing known about 'std::log10'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:185: Warning 315: Nothing known about 'std::modf'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:186: Warning 315: Nothing known about 'std::pow'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:187: Warning 315: Nothing known about 'std::sqrt'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:188: Warning 315: Nothing known about 'std::ceil'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:189: Warning 315: Nothing known about 'std::fabs'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:190: Warning 315: Nothing known about 'std::floor'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:191: Warning 315: Nothing known about 'std::fmod'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:192: Warning 315: Nothing known about 'std::max'.
/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.i:193: Warning 315: Nothing known about 'std::min'.
cd /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles/_dolfin_compile_code_b75a7140f
4b7f593c8d2e8c722e633c4711e3c15.dir/DependInfo.cmake --color=
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Dependee "/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/depend.internal".
Scanning dependencies of target _dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15
make[2]: Leaving directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
make -f CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/build.make CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/build
make[2]: Entering directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
/usr/bin/cmake -E cmake_progress_report /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/CMakeFiles 2
[100%] Building CXX object CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15PYTHON_wrap.cxx.o
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/usr/include/hdf5/openmpi -isystem /usr/lib/petscdir/3.4.2/include -isystem /usr/lib/petscdir/3.4.2/linux-gnu-c-opt/include -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/hdf5/openmpi/include -isystem /usr/include/qt4 -isystem /usr/include/vtk-5.8 -I/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/. -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -I/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15 -o CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15PYTHON_wrap.cxx.o -c /tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15/dolfin_compile_code_b75a7140
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make[2]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libumfpack.so', needed by '_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.so'. Stop.
make[2]: Leaving directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
CMakeFiles/Makefile2:60: recipe for target 'CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/all' failed
make[1]: *** [CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/all] Error 2
make[1]: Leaving directory '/tmp/user/1000/tmp4mcOz32015-4-6-10-09_instant_cf7560cc442257e4cd3a87a4673da8832b79fa28/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
Makefile:76: recipe for target 'all' failed
make: *** [all] Error 2
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