Bug#775225: code-aster-mpi-engine: Segmentation fault code: Address not mapped
fairlead_it
it at fairleadmaritime.co.uk
Mon Jan 12 19:05:24 UTC 2015
Package: code-aster-mpi-engine
Version: 11.5.0+dfsg2-3+b1
Severity: grave
Justification: renders package unusable
Dear Maintainer,
I did the following
1. cp /usr/share/aster/tests/sdll108b.* ./
2. edit the sdll108b.export file as follows
P actions make_etude
P memory_limit 512
P mode interactif
P mpi_nbcpu 1
P mpi_nbnoeud 1
P ncpus 1
P rep_trav /scratch/fairlead-fairlead17-interactif.7092/
P testlist R
P time_limit 60
P version 12.1
A memjeveux 64.0
A tpmax 900
F comm sdll108b.comm D 1
F mmed sdll108b.mmed D 20
as_run sdll108b.export
Code aster gave a sgementaion fault
--------------------------------------------------------------------------------
Code_Aster run
<INFO> Command line 1 :
<INFO> ./aster Python/Execution/E_SUPERV.py -eficas_path ./Python -commandes fort.1 -num_job 20207 -mode interactif -rep_outils /usr/lib/codeaster/outils -rep_mat /usr/lib/codeaster/STABLE/materiau -rep_dex /usr/lib/codeaster/STABLE/datg -suivi_batch -memjeveux 64.0 -tpmax 900
[fairlead17:20250] *** Process received signal ***
[fairlead17:20250] Signal: Segmentation fault (11)
[fairlead17:20250] Signal code: Address not mapped (1)
[fairlead17:20250] Failing at address: 0xed7
[fairlead17:20250] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xf8d0) [0x7f9eda0d38d0]
[fairlead17:20250] [ 1] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x55b8eb) [0x7f9ed4ece8eb]
[fairlead17:20250] [ 2] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x58cb23) [0x7f9ed4effb23]
[fairlead17:20250] [ 3] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x5de103) [0x7f9ed4f51103]
[fairlead17:20250] [ 4] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x5de14f) [0x7f9ed4f5114f]
[fairlead17:20250] [ 5] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x5e155a) [0x7f9ed4f5455a]
[fairlead17:20250] [ 6] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x4f89f6) [0x7f9ed4e6b9f6]
[fairlead17:20250] [ 7] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x4f97cb) [0x7f9ed4e6c7cb]
[fairlead17:20250] [ 8] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x4f9ad6) [0x7f9ed4e6cad6]
[fairlead17:20250] [ 9] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x4a6824) [0x7f9ed4e19824]
[fairlead17:20250] [10] /usr/lib/x86_64-linux-gnu/libamdocl64.so(+0x4c726e) [0x7f9ed4e3a26e]
[fairlead17:20250] [11] /usr/lib/x86_64-linux-gnu/libamdocl64.so(clIcdGetPlatformIDsKHR+0x93) [0x7f9ed4e02d73]
[fairlead17:20250] [12] /usr/lib/x86_64-linux-gnu/libOpenCL.so.1(+0x4341) [0x7f9ed76aa341]
[fairlead17:20250] [13] /lib64/ld-linux-x86-64.so.2(+0xe9fa) [0x7f9edb33c9fa]
[fairlead17:20250] [14] /lib64/ld-linux-x86-64.so.2(+0xeae3) [0x7f9edb33cae3]
[fairlead17:20250] [15] /lib64/ld-linux-x86-64.so.2(+0x12c48) [0x7f9edb340c48]
[fairlead17:20250] [16] /lib64/ld-linux-x86-64.so.2(+0xe8b4) [0x7f9edb33c8b4]
[fairlead17:20250] [17] /lib64/ld-linux-x86-64.so.2(+0x1243b) [0x7f9edb34043b]
[fairlead17:20250] [18] /lib/x86_64-linux-gnu/libdl.so.2(+0x102b) [0x7f9ed9b1802b]
[fairlead17:20250] [19] /lib64/ld-linux-x86-64.so.2(+0xe8b4) [0x7f9edb33c8b4]
[fairlead17:20250] [20] /lib/x86_64-linux-gnu/libdl.so.2(+0x15dd) [0x7f9ed9b185dd]
[fairlead17:20250] [21] /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f9ed9b180c1]
[fairlead17:20250] [22] /usr/lib/x86_64-linux-gnu/libltdl.so.7(+0x68a2) [0x7f9eda2e78a2]
[fairlead17:20250] [23] /usr/lib/x86_64-linux-gnu/libltdl.so.7(+0x31e0) [0x7f9eda2e41e0]
[fairlead17:20250] [24] /usr/lib/x86_64-linux-gnu/libltdl.so.7(+0x4e73) [0x7f9eda2e5e73]
[fairlead17:20250] [25] /usr/lib/x86_64-linux-gnu/libltdl.so.7(lt_dlopenadvise+0x138) [0x7f9eda2e68e8]
[fairlead17:20250] [26] /usr/lib/x86_64-linux-gnu/libltdl.so.7(lt_dlopenext+0x40) [0x7f9eda2e69c0]
[fairlead17:20250] [27] /usr/lib/x86_64-linux-gnu/libhwloc.so.5(+0x1417b) [0x7f9eda4ff17b]
[fairlead17:20250] [28] /usr/lib/x86_64-linux-gnu/libltdl.so.7(+0x3dfb) [0x7f9eda2e4dfb]
[fairlead17:20250] [29] /usr/lib/x86_64-linux-gnu/libltdl.so.7(+0x3831) [0x7f9eda2e4831]
[fairlead17:20250] *** End of error message ***
Segmentation fault (core dumped)
EXIT_COMMAND_20207_00000018=139
<INFO> Code_Aster run ended, diagnostic : <F>_ABNORMAL_ABORT
<E>_CORE_FILE Code_Aster run created a coredump
<INFO> core file name : core
--------------------------------------------------------------------------------
Coredump analysis
coredump analysis... [ OK ]
warning: core file may not match specified executable file.
[New LWP 20250]
Core was generated by `mpirun -np 1 --hostfile /etc/codeaster/aster-mpihosts /tmp/fairlead-fairlead17-'.
Program terminated with signal SIGSEGV, Segmentation fault.
#0 0x00007f9ed4ece8eb in ?? ()
#0 0x00007f9ed4ece8eb in ?? ()
#1 0x000000000164d500 in ?? ()
#2 0x0000000001668860 in ?? ()
#3 0x00007fff52a2b890 in ?? ()
#4 0x0000000001668650 in ?? ()
#5 0x00007fff52a2b8b8 in ?? ()
#6 0x00000000016682f0 in ?? ()
#7 0x0000000000000001 in ?? ()
#8 0x00007f9edb33777d in ?? ()
#9 0x0000000000000000 in ?? ()
--------------------------------------------------------------------------------
-- System Information:
Debian Release: 8.0
APT prefers testing-updates
APT policy: (500, 'testing-updates'), (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.16.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=locale: Cannot set LC_CTYPE to default locale: No such file or directory
locale: Cannot set LC_MESSAGES to default locale: No such file or directory
locale: Cannot set LC_ALL to default locale: No such file or directory
ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages code-aster-mpi-engine depends on:
ii libatlas3-base [liblapack.so.3] 3.10.2-6
ii libblas3 [libblas.so.3] 1.2.20110419-10
ii libc6 2.19-13
ii libgcc1 1:4.9.1-19
ii libgfortran3 4.9.1-19
ii libgomp1 4.9.1-19
ii libhdf5-openmpi-8 1.8.13+docs-15
ii libhwloc5 1.10.0-3
ii libhypre-2.8.0b 2.8.0b-2
ii liblapack3 [liblapack.so.3] 3.5.0-4
ii libmed1 3.0.6-7
ii libmumps-4.10.0 4.10.0.dfsg-3+b2
ii libopenblas-base [liblapack.so.3] 0.2.12-1
ii libopenmpi1.6 1.6.5-9.1
ii libpetsc3.4.2 3.4.2.dfsg1-8.1+b1
ii libpython2.7 2.7.8-11
ii libquadmath0 4.9.1-19
ii libscalapack-openmpi1 1.8.0-12
ii libscotch-5.1 5.1.12b.dfsg-2+b1
ii libstdc++6 4.9.1-19
ii omniidl 4.1.6-2
code-aster-mpi-engine recommends no packages.
Versions of packages code-aster-mpi-engine suggests:
pn eficas <none>
ii gmsh 2.8.5+dfsg-1.1+b1
ii grace 1:5.1.24-3
pn metis-edf <none>
-- debconf information:
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = "en_GB:en",
LC_ALL = (unset),
LANG = "en_GB.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
locale: Cannot set LC_CTYPE to default locale: No such file or directory
locale: Cannot set LC_MESSAGES to default locale: No such file or directory
locale: Cannot set LC_ALL to default locale: No such file or directory
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