Bug#788372: yade: FTBFS in sid

[Andreas Beckmann]

Source: yade
Version: 1.12.0-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)

yade no longer builds in sid:

dh_auto_configure -- -DruntimePREFIX="/usr" -DINSTALL_PREFIX="/usr" -DNOSUFFIX=ON -DLIBRARY_OUTPUT_PATH=lib/x86_64-linux-gnu
        cmake ../.. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DruntimePREFIX=/usr -DINSTALL_PREFIX=/usr -DNOSUFFIX=ON -DLIBRARY_OUTPUT_PATH=lib/x86_64-linux-gnu
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.9.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PythonInterp: /usr/bin/python (found version "2.7.10")
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake (found version "4.8.7")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28")
-- Version is set to 1.12.0
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- Found GL2PS: /usr/lib/libgl2ps.so
-- Found CGAL: /usr/include/CGAL, /usr/lib/x86_64-linux-gnu/libCGAL.so
-- Found NumPy: version "1.8.2" /usr/lib/python2.7/dist-packages/numpy/core/include
-- Found Loki: /usr/include
-- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0 and -save-temps
-- Boost version: 1.55.0
-- Found the following Boost libraries:
--   python
--   thread
--   filesystem
--   iostreams
--   regex
--   serialization
--   system
--   date_time
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.10")
-- Found Eigen3, version: 3.2.4
-- Disable vectorization
-- The imported target "vtkCommonCoreTCL" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkCommonCoreTCL-6.1.so.6.1.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.1/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkCommonMathTCL" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkCommonMathTCL-6.1.so.6.1.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.1/VTKTargets.cmake"
but not all the files it references.

[ ... many more of these vtk problems ... ]

-- The imported target "vtkLocalExampleTCL" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkLocalExampleTCL-6.1.so.6.1.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.1/VTKTargets.cmake"
but not all the files it references.

-- Found VTK
-- Found OpenMP
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- checking for one of the modules 'glib-2.0'
-- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include
-- Looking for include file glib/gregex.h
-- Looking for include file glib/gregex.h - not found
-- Found GTS
-- Found Qt4: /usr/bin/qmake (found version "4.8.7")
-- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so
-- Found QGLViewer: /usr/lib/x86_64-linux-gnu/libQGLViewer.so
-- Found GUI-LIBS
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found GMP: /usr/include/x86_64-linux-gnu
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found CGAL
-- Found Cholmod: /usr/lib/x86_64-linux-gnu/libcholmod.so
-- Found OpenBlas: /usr/lib/libopenblas.so
-- Found Metis: /usr/include
-- Found Cholmod
-- Found OpenBlas
-- Found Metis
-- Found GL2PS
-- Suffix is set to
-- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu
-- runtimePREFIX is set to /usr
-- Found gts: /usr/lib/python2.7/dist-packages/gts
-- Use system gts version
-- Found minieigen: /usr/lib/python2.7/dist-packages/minieigen.so
-- Use system minieigen version
-- Found Tkinter: /usr/lib/python2.7/lib-tk/Tkinter.pyc
-- VTK version 6 is found
-- ===========================================================
-- Yade configured with following features: Odeint VTK OpenMP GTS GUI CGAL PFVFLOW LINSOLV GL2PS LBMFLOW
-- Disabled features: SPH LIQMIGRATION MASK_ARBITRARY
-- Optimized build
-- ===========================================================
-- Configuring incomplete, errors occurred!


Andreas
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