Bug#754713: elmerfem: FTBFS now also on amd64...
Tobias Frost
tobi at debian.org
Tue Apr 19 19:51:14 UTC 2016
Control: severity -1 serious
Mmm...
A local build on amd64 showed also this error here...
Its bad because this is RV.
Its good because it allows to debug more easy...
Attaching the pbuilder's log and config.log
Seems that the test programm does not find:
/usr/lib/libparpack.so: undefined reference to `mpi_comm_rank_'
/usr/lib/libparpack.so: undefined reference to `mpi_allreduce_'
Sorry for not digging deeper now, ENOTIME...
--
tobi
-------------- next part --------------
dpkg-checkbuilddeps: error: Unmet build dependencies: gfortran libblas-dev | libblas.so liblapack-dev | liblapack-3.so mpi-default-dev mpi-default-bin libhypre-dev libsuitesparse-dev libarpack2-dev libparpack2-dev libmumps-scotch-dev tk8.5-dev tcl8.5-dev libscotchmetis-dev r-base-core
W: Unmet build-dependency in source
dpkg-buildpackage: source package elmerfem
dpkg-buildpackage: source version 6.1.0.svn.5396.dfsg2-4
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Boris Pek <tehnick at debian.org>
dpkg-source -I -i --before-build elmerfem-6.1.0.svn.5396.dfsg2
fakeroot debian/rules clean
if [ ! -d .pc ]; then \
QUILT_PATCHES=debian/patches quilt push -a; \
fi
dh_testdir
for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \
if [ -e $elmermodule/Makefile ]; then \
echo; echo CLEANING ELMER MODULE $elmermodule; echo; \
make -C $elmermodule maintainer-clean; \
fi; \
done
for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done
for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in; do \
if [ -e $backupfile.bak ]; then \
mv -f $backupfile.bak $backupfile; \
fi; \
done
rm -rf elmergrid/src/metis post/src/fonts/TrueType
rm -f stamp-*
if [ -d .pc ]; then \
QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \
fi
Removing patch add-NAMESPACE-for-elmerparam-R-module.patch
Removing elmerparam/src/R/elmerparam/NAMESPACE
Removing patch elmer-revision.patch
Restoring fem/acx_elmer.m4
Removing patch no-metis-partmesh.patch
Restoring elmergrid/src/femelmer.c
Removing patch banish-rpath.patch
Restoring fem/src/Makefile.am
No patches applied
rm -f eio/aclocal.m4
rm -f hutiter/aclocal.m4
dh_clean
dpkg-source -I -i -b elmerfem-6.1.0.svn.5396.dfsg2
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: applying banish-rpath.patch
dpkg-source: info: applying no-metis-partmesh.patch
dpkg-source: info: applying elmer-revision.patch
dpkg-source: info: applying add-NAMESPACE-for-elmerparam-R-module.patch
dpkg-source: info: building elmerfem using existing ./elmerfem_6.1.0.svn.5396.dfsg2.orig.tar.gz
dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5396.dfsg2-4.debian.tar.xz
dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5396.dfsg2-4.dsc
dpkg-genchanges -S >../elmerfem_6.1.0.svn.5396.dfsg2-4_source.changes
dpkg-genchanges: not including original source code in upload
dpkg-source -I -i --after-build elmerfem-6.1.0.svn.5396.dfsg2
dpkg-source: info: unapplying add-NAMESPACE-for-elmerparam-R-module.patch
dpkg-source: info: unapplying elmer-revision.patch
dpkg-source: info: unapplying no-metis-partmesh.patch
dpkg-source: info: unapplying banish-rpath.patch
dpkg-buildpackage: binary and diff upload (original source NOT included)
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Apr 19 21:29:53 CEST 2016
I: pbuilder-time-stamp: 1461094193
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/sid-amd64-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /home/tobi/pbuilder_repo/deps
I: Mounting /var/cache/pbuilder/ccache
I: policy-rc.d already exists
W: Could not create compatibility symlink because /tmp/buildd exists and it is not a directory
W: no hooks of type H found -- ignoring
I: Obtaining the cached apt archive contents
I: Setting up ccache
I: Installing the build-deps
I: user script /var/cache/pbuilder/build//14305/tmp/hooks/D05deps starting
##### debs in /home/tobi/pbuild_repp/deps #####
Get:1 file:/home/tobi/pbuilder_repo/deps ./ InRelease
Ign:1 file:/home/tobi/pbuilder_repo/deps ./ InRelease
Get:2 file:/home/tobi/pbuilder_repo/deps ./ Release
Ign:2 file:/home/tobi/pbuilder_repo/deps ./ Release
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Ign:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Ign:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Ign:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Ign:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Ign:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:3 file:/home/tobi/pbuilder_repo/deps ./ Packages
Get:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Ign:4 file:/home/tobi/pbuilder_repo/deps ./ Translation-en
Get:5 http://thecus:3142/cdn.debian.net/debian sid InRelease [196 kB]
Get:6 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages.diff/Index [27.9 kB]
Get:7 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en.diff/Index [27.9 kB]
Get:8 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages.diff/Index [11.6 kB]
Get:9 http://thecus:3142/cdn.debian.net/debian sid/contrib Translation-en.diff/Index [1720 B]
Get:10 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages.diff/Index [11.1 kB]
Get:11 http://thecus:3142/cdn.debian.net/debian sid/non-free Translation-en.diff/Index [6148 B]
Get:12 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-13-2052.29.pdiff [19.0 kB]
Get:13 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-14-0252.05.pdiff [16.9 kB]
Get:14 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-15-0902.46.pdiff [54.5 kB]
Get:15 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-15-1457.15.pdiff [30.2 kB]
Get:16 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-15-2051.52.pdiff [14.4 kB]
Get:17 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-16-0255.24.pdiff [6326 B]
Get:18 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-16-0851.59.pdiff [9486 B]
Get:19 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-16-1452.46.pdiff [5184 B]
Get:20 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-16-2051.49.pdiff [11.0 kB]
Get:21 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-17-0256.59.pdiff [14.9 kB]
Get:22 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-17-0856.42.pdiff [1309 B]
Get:23 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-17-1450.45.pdiff [2739 B]
Get:24 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-17-2053.30.pdiff [23.2 kB]
Get:25 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-18-0252.37.pdiff [24.3 kB]
Get:26 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-18-0852.47.pdiff [3127 B]
Get:27 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-18-1522.15.pdiff [79.1 kB]
Get:28 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-18-2056.56.pdiff [39.9 kB]
Get:29 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-19-0252.59.pdiff [8505 B]
Get:30 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-19-0851.54.pdiff [6069 B]
Get:31 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-19-1454.55.pdiff [49.9 kB]
Get:32 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-13-2052.29.pdiff [606 B]
Get:33 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-14-0252.05.pdiff [363 B]
Get:34 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-14-0851.08.pdiff [941 B]
Get:35 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-15-0902.46.pdiff [10.4 kB]
Get:36 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-15-1457.15.pdiff [9814 B]
Get:37 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-15-2051.52.pdiff [1589 B]
Get:38 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-16-0255.24.pdiff [964 B]
Get:39 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-16-0851.59.pdiff [335 B]
Get:40 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-16-2051.49.pdiff [1227 B]
Get:31 http://thecus:3142/cdn.debian.net/debian sid/main amd64 Packages 2016-04-19-1454.55.pdiff [49.9 kB]
Get:41 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-17-0256.59.pdiff [826 B]
Get:42 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-17-0856.42.pdiff [59 B]
Get:43 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-17-1450.45.pdiff [553 B]
Get:44 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-17-2053.30.pdiff [4231 B]
Get:45 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-18-0252.37.pdiff [1883 B]
Get:46 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-18-0852.47.pdiff [390 B]
Get:47 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-18-1522.15.pdiff [3434 B]
Get:48 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-18-2056.56.pdiff [1197 B]
Get:49 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-19-0252.59.pdiff [716 B]
Get:50 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-19-0851.54.pdiff [50 B]
Get:51 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-19-1454.55.pdiff [3132 B]
Get:51 http://thecus:3142/cdn.debian.net/debian sid/main Translation-en 2016-04-19-1454.55.pdiff [3132 B]
Get:52 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-13-2052.29.pdiff [222 B]
Get:53 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-17-0856.42.pdiff [481 B]
Get:54 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-17-2053.30.pdiff [31 B]
Get:55 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-18-0252.37.pdiff [415 B]
Get:56 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-18-2056.56.pdiff [1352 B]
Get:57 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-19-0252.59.pdiff [1952 B]
Get:58 http://thecus:3142/cdn.debian.net/debian sid/contrib Translation-en 2016-04-17-2053.30.pdiff [457 B]
Get:59 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-15-0902.46.pdiff [238 B]
Get:60 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-15-2051.52.pdiff [51 B]
Get:61 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-17-2053.30.pdiff [407 B]
Get:62 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-18-2056.56.pdiff [646 B]
Get:63 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-19-0252.59.pdiff [352 B]
Get:64 http://thecus:3142/cdn.debian.net/debian sid/non-free Translation-en 2016-04-15-2051.52.pdiff [47 B]
Get:57 http://thecus:3142/cdn.debian.net/debian sid/contrib amd64 Packages 2016-04-19-0252.59.pdiff [1952 B]
Get:58 http://thecus:3142/cdn.debian.net/debian sid/contrib Translation-en 2016-04-17-2053.30.pdiff [457 B]
Get:63 http://thecus:3142/cdn.debian.net/debian sid/non-free amd64 Packages 2016-04-19-0252.59.pdiff [352 B]
Get:65 http://thecus:3142/cdn.debian.net/debian sid/non-free Translation-en 2016-04-17-2053.30.pdiff [31 B]
Get:65 http://thecus:3142/cdn.debian.net/debian sid/non-free Translation-en 2016-04-17-2053.30.pdiff [31 B]
Fetched 752 kB in 1s (542 kB/s)
Reading package lists...
I: user script /var/cache/pbuilder/build//14305/tmp/hooks/D05deps finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas.so, liblapack-dev | liblapack-3.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libparpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.5-dev, tcl8.5-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, libscotchmetis-dev, r-base-core, libpng-dev
Conflicts: gcc-multilib, libatlas-base-dev, libatlas3-base, matlab-support
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 16327 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 5); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on quilt; however:
Package quilt is not installed.
pbuilder-satisfydepends-dummy depends on po-debconf; however:
Package po-debconf is not installed.
pbuilder-satisfydepends-dummy depends on autoconf; however:
Package autoconf is not installed.
pbuilder-satisfydepends-dummy depends on automake; however:
Package automake is not installed.
pbuilder-satisfydepends-dummy depends on gfortran; however:
Package gfortran is not installed.
pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however:
Package libblas-dev is not installed.
Package libblas.so is not installed.
pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack-3.so; however:
Package liblapack-dev is not installed.
Package liblapack-3.so is not installed.
pbuilder-s
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gfortran{a} gfortran-5{a} libamd2.4.1{a} libarpack2{a} libarpack2-dev{a} libblacs-mpi-dev{a} libblacs-openmpi1{a} libblas-common{a} libblas-dev{a} libblas3{a} libbtf1.2.1{a} libcairo2{a} libcamd2.4.1{a} libccolamd2.9.1{a} libcholmod3.0.6{a} libcolamd2.9.1{a} libcsparse3.1.4{a} libcurl3{a} libcxsparse3.1.4{a} libdatrie1{a} libdrm-amdgpu1{a} libdrm-dev{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libftgl-dev{a} libftgl2{a} libgfortran-5-dev{a} libgfortran3{a} libgl1-mesa-dev{a} libgl1-mesa-glx{a} libglapi-mesa{a} libglu1-mesa{a} libglu1-mesa-dev{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhogweed4{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libhypre-2.8.0b{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libidn11{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libklu1.3.3{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2.2.1{a} libltdl-dev{a} libltdl7{a} libmumps-4.10.0{a} libmumps-dev{a} libmumps-scotch-4.10.0{a} libmumps-scotch-dev{a} libncurses5-dev{a} libnettle6{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi1.10{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libreadline-dev{a} libreadline6-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi1{a} libscotch-5.1{a} libscotch-dev{a} libscotchmetis-dev{a} libsigsegv2{a} libsm6{a} libspqr2.0.2{a} libssh2-1{a} libsuitesparse-dev{a} libsuitesparseconfig4.4.6{a} libsuperlu-dev{a} libsuperlu4{a} libtasn1-6{a} libtcl8.5{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtinfo-dev{a} libtk8.5{a} libtk8.6{a} libtool{a} libumfpack5.7.1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb1{a} libxcb1-dev{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxrender-dev{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt6{a} libxxf86vm-dev{a} libxxf86vm1{a} m4{a} mesa-common-dev{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssl{a} pkg-config{a} po-debconf{a} quilt{a} r-base-core{a} tcl8.5{a} tcl8.5-dev{a} tk8.5{a} tk8.5-dev{a} ucf{a} unzip{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dri2-dev{a} x11proto-fixes-dev{a} x11proto-gl-dev{a} x11proto-input-dev{a} x11proto-kb-dev{a} x11proto-render-dev{a} x11proto-scrnsaver-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xdg-utils{a} xorg-sgml-doctools{a} xtrans-dev{a} zip{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
aterm aterm-ml eterm evilvte gnome-terminal guake konsole krb5-locales kterm less libfile-mimeinfo-perl libgl1-mesa-dri libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-doc libx11-protocol-perl lilyterm lxterminal mate-terminal mlterm mlterm-tiny mrxvt mrxvt-cjk mrxvt-mini pterm qterminal r-base-dev r-doc-html r-recommended roxterm rxvt rxvt-ml rxvt-unicode rxvt-unicode-256color rxvt-unicode-lite sakura stterm terminal.app terminator terminology termit vala-terminal x11-utils x11-xserver-utils xfce4-terminal xiterm+thai xterm xvt
0 packages upgraded, 217 newly installed, 0 to remove and 21 not upgraded.
Need to get 31.0 MB/108 MB of archives. After unpacking 384 MB will be used.
Writing extended state information...
Get: 1 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libbtf1.2.1 amd64 1:4.4.6-1 [18.5 kB]
Get: 2 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libcsparse3.1.4 amd64 1:4.4.6-1 [34.4 kB]
Get: 3 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libcxsparse3.1.4 amd64 1:4.4.6-1 [72.4 kB]
Get: 4 http://thecus:3142/cdn.debian.net/debian sid/main amd64 mesa-common-dev amd64 11.1.3-1 [484 kB]
Get: 5 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libgl1-mesa-dev amd64 11.1.3-1 [38.8 kB]
Get: 6 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libklu1.3.3 amd64 1:4.4.6-1 [82.7 kB]
Get: 7 http://thecus:3142/cdn.debian.net/debian sid/main amd64 liblapack-dev amd64 3.6.0-2 [1958 kB]
Get: 8 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libldl2.2.1 amd64 1:4.4.6-1 [18.2 kB]
Get: 9 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libparpack2 amd64 3.3.0-1+b1 [91.9 kB]
Get: 10 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libreadline6-dev amd64 6.3-8+b4 [123 kB]
Get: 11 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libreadline-dev amd64 6.3-8+b4 [956 B]
Get: 12 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libspqr2.0.2 amd64 1:4.4.6-1 [75.0 kB]
Get: 13 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libsuitesparse-dev amd64 1:4.4.6-1 [911 kB]
Get: 14 http://thecus:3142/cdn.debian.net/debian sid/main amd64 r-base-core amd64 3.2.5-1 [20.6 MB]
Get: 15 http://thecus:3142/cdn.debian.net/debian sid/main amd64 tcl8.5 amd64 8.5.19-2 [58.8 kB]
Get: 16 http://thecus:3142/cdn.debian.net/debian sid/main amd64 tcl8.5-dev amd64 8.5.19-2 [717 kB]
Get: 17 http://thecus:3142/cdn.debian.net/debian sid/main amd64 tk8.5 amd64 8.5.19-1 [107 kB]
Get: 18 http://thecus:3142/cdn.debian.net/debian sid/main amd64 tk8.5-dev amd64 8.5.19-1 [754 kB]
Get: 19 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libarpack2-dev amd64 3.3.0-1+b1 [103 kB]
Get: 20 http://thecus:3142/cdn.debian.net/debian sid/main amd64 mpi-default-bin amd64 1.6 [3944 B]
Get: 21 http://thecus:3142/cdn.debian.net/debian sid/main amd64 mpi-default-dev amd64 1.6 [4710 B]
Get: 22 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libhypre-2.8.0b amd64 2.8.0b-3 [1370 kB]
Get: 23 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libhypre-dev all 2.8.0b-3 [134 kB]
Get: 24 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libscotch-5.1 amd64 5.1.12b.dfsg-2+b2 [307 kB]
Get: 25 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libmumps-scotch-4.10.0 amd64 4.10.0.dfsg-4 [897 kB]
Get: 26 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libmumps-scotch-dev amd64 4.10.0.dfsg-4 [808 kB]
Get: 27 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libparpack2-dev amd64 3.3.0-1+b1 [98.8 kB]
Get: 28 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libscotch-dev amd64 5.1.12b.dfsg-2+b2 [1121 kB]
Get: 29 http://thecus:3142/cdn.debian.net/debian sid/main amd64 libscotchmetis-dev amd64 5.1.12b.dfsg-2+b2 [28.8 kB]
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Processing triggers for libc-bin (2.22-6) ...
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Creating config file /etc/papersize with new version
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Setting up libhypre-dev (2.8.0b-3) ...
Setting up libscalapack-openmpi1 (1.8.0-12.3) ...
Setting up libmumps-4.10.0 (4.10.0.dfsg-4) ...
Setting up libscalapack-mpi-dev (1.8.0-12.3) ...
Setting up libmumps-dev (4.10.0.dfsg-4) ...
Setting up libscotch-5.1 (5.1.12b.dfsg-2+b2) ...
Setting up libmumps-scotch-4.10.0 (4.10.0.dfsg-4) ...
Setting up libmumps-scotch-dev (4.10.0.dfsg-4) ...
Setting up libparpack2-dev (3.3.0-1+b1) ...
Setting up libscotch-dev (5.1.12b.dfsg-2+b2) ...
Setting up libscotchmetis-dev (5.1.12b.dfsg-2+b2) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Setting up debhelper (9.20160403) ...
Setting up dh-autoreconf (12) ...
Processing triggers for libc-bin (2.22-6) ...
Processing triggers for systemd (229-4) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
apt-utils is already the newest version (1.2.10).
lintian is already the newest version (2.5.43).
Suggested packages:
distcc
The following NEW packages will be installed:
ccache eatmydata fakeroot libeatmydata1 libfakeroot
0 upgraded, 5 newly installed, 0 to remove and 21 not upgraded.
Need to get 0 B/268 kB of archives.
After this operation, 764 kB of additional disk space will be used.
Selecting previously unselected package ccache.
(Reading database ...
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(Reading database ... 24332 files and directories currently installed.)
Preparing to unpack .../ccache_3.2.5-1_amd64.deb ...
Unpacking ccache (3.2.5-1) ...
Selecting previously unselected package libeatmydata1:amd64.
Preparing to unpack .../libeatmydata1_105-3_amd64.deb ...
Unpacking libeatmydata1:amd64 (105-3) ...
Selecting previously unselected package eatmydata.
Preparing to unpack .../eatmydata_105-3_all.deb ...
Unpacking eatmydata (105-3) ...
Selecting previously unselected package libfakeroot:amd64.
Preparing to unpack .../libfakeroot_1.20.2-1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.20.2-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.20.2-1_amd64.deb ...
Unpacking fakeroot (1.20.2-1) ...
Processing triggers for man-db (2.7.5-1) ...
Processing triggers for libc-bin (2.22-6) ...
Setting up ccache (3.2.5-1) ...
Updating symlinks in /usr/lib/ccache ...
Setting up libeatmydata1:amd64 (105-3) ...
Setting up eatmydata (105-3) ...
Setting up libfakeroot:amd64 (1.20.2-1) ...
Setting up fakeroot (1.20.2-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for libc-bin (2.22-6) ...
I: Copying back the cached apt archive contents
I: new cache content 'tk8.5_8.5.19-1_amd64.deb' added
I: new cache content 'libmumps-scotch-dev_4.10.0.dfsg-4_amd64.deb' added
I: new cache content 'libreadline-dev_6.3-8+b4_amd64.deb' added
I: new cache content 'tk8.5-dev_8.5.19-1_amd64.deb' added
I: new cache content 'libreadline6-dev_6.3-8+b4_amd64.deb' added
I: new cache content 'libparpack2-dev_3.3.0-1+b1_amd64.deb' added
I: new cache content 'libcsparse3.1.4_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'libhypre-2.8.0b_2.8.0b-3_amd64.deb' added
I: new cache content 'mpi-default-bin_1.6_amd64.deb' added
I: new cache content 'libgl1-mesa-dev_11.1.3-1_amd64.deb' added
I: new cache content 'libsuitesparse-dev_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'libcxsparse3.1.4_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'libscotch-5.1_5.1.12b.dfsg-2+b2_amd64.deb' added
I: new cache content 'libhypre-dev_2.8.0b-3_all.deb' added
I: new cache content 'mesa-common-dev_11.1.3-1_amd64.deb' added
I: new cache content 'libscotch-dev_5.1.12b.dfsg-2+b2_amd64.deb' added
I: new cache content 'tcl8.5-dev_8.5.19-2_amd64.deb' added
I: new cache content 'r-base-core_3.2.5-1_amd64.deb' added
I: new cache content 'libbtf1.2.1_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'mpi-default-dev_1.6_amd64.deb' added
I: new cache content 'libklu1.3.3_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'libldl2.2.1_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'liblapack-dev_3.6.0-2_amd64.deb' added
I: new cache content 'libscotchmetis-dev_5.1.12b.dfsg-2+b2_amd64.deb' added
I: new cache content 'libparpack2_3.3.0-1+b1_amd64.deb' added
I: new cache content 'libspqr2.0.2_1%3a4.4.6-1_amd64.deb' added
I: new cache content 'libarpack2-dev_3.3.0-1+b1_amd64.deb' added
I: new cache content 'libmumps-scotch-4.10.0_4.10.0.dfsg-4_amd64.deb' added
I: new cache content 'tcl8.5_8.5.19-2_amd64.deb' added
I: Copying source file
I: copying [../elmerfem_6.1.0.svn.5396.dfsg2-4.dsc]
I: copying [../elmerfem_6.1.0.svn.5396.dfsg2.orig.tar.gz]
I: copying [../elmerfem_6.1.0.svn.5396.dfsg2-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package (elmerfem_6.1.0.svn.5396.dfsg2-4.dsc)
dpkg-source: info: extracting elmerfem in elmerfem-6.1.0.svn.5396.dfsg2
dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg2.orig.tar.gz
dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg2-4.debian.tar.xz
dpkg-source: info: applying banish-rpath.patch
dpkg-source: info: applying no-metis-partmesh.patch
dpkg-source: info: applying elmer-revision.patch
dpkg-source: info: applying add-NAMESPACE-for-elmerparam-R-module.patch
I: Building the package
I: user script /var/cache/pbuilder/build//14305/tmp/hooks/A10ccachesize starting
I: user script /var/cache/pbuilder/build//14305/tmp/hooks/A10ccachesize finished
I: Running cd /build/*/ && env PATH="/usr/lib/ccache:/usr/lib/ccache:/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -I -i -j4 -d -rfakeroot
dpkg-buildpackage: source package elmerfem
dpkg-buildpackage: source version 6.1.0.svn.5396.dfsg2-4
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Boris Pek <tehnick at debian.org>
dpkg-source -I -i --before-build elmerfem-6.1.0.svn.5396.dfsg2
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
if [ ! -d .pc ]; then \
QUILT_PATCHES=debian/patches quilt push -a; \
fi
dh_testdir
for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \
if [ -e $elmermodule/Makefile ]; then \
echo; echo CLEANING ELMER MODULE $elmermodule; echo; \
make -C $elmermodule maintainer-clean; \
fi; \
done
for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done
for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in; do \
if [ -e $backupfile.bak ]; then \
mv -f $backupfile.bak $backupfile; \
fi; \
done
rm -rf elmergrid/src/metis post/src/fonts/TrueType
rm -f stamp-*
if [ -d .pc ]; then \
QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \
fi
Removing patch debian/patches/add-NAMESPACE-for-elmerparam-R-module.patch
Removing elmerparam/src/R/elmerparam/NAMESPACE
Removing patch debian/patches/elmer-revision.patch
Restoring fem/acx_elmer.m4
Removing patch debian/patches/no-metis-partmesh.patch
Restoring elmergrid/src/femelmer.c
Removing patch debian/patches/banish-rpath.patch
Restoring fem/src/Makefile.am
No patches applied
rm -f eio/aclocal.m4
rm -f hutiter/aclocal.m4
dh_clean
dpkg-source -I -i -b elmerfem-6.1.0.svn.5396.dfsg2
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: applying banish-rpath.patch
dpkg-source: info: applying no-metis-partmesh.patch
dpkg-source: info: applying elmer-revision.patch
dpkg-source: info: applying add-NAMESPACE-for-elmerparam-R-module.patch
dpkg-source: info: building elmerfem using existing ./elmerfem_6.1.0.svn.5396.dfsg2.orig.tar.gz
dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5396.dfsg2-4.debian.tar.xz
dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5396.dfsg2-4.dsc
debian/rules build
if [ ! -d .pc ]; then \
QUILT_PATCHES=debian/patches quilt push -a; \
fi
dh_testdir
for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in; do \
cp -a $backupfile $backupfile.bak; \
done
mkdir elmergrid/src/metis
install -d post/src/fonts/TrueType
for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do touch $missingfile; done
for aclocaldir in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \
echo Running aclocal/automake in module $aclocaldir; \
(cd $aclocaldir && aclocal && automake --add-missing); \
done
Running aclocal/automake in module eio
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:30: the top level
configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from...
configure.in:32: the top level
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:30: the top level
configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from...
configure.in:32: the top level
configure.in:9: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:9: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:11: installing './compile'
src/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module matc
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:11: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:13: installing './compile'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module elmerparam
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from...
configure.in:21: the top level
configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:1: ee_FC_MODFILE is expanded from...
configure.in:23: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:66: ee_MEXEXT is expanded from...
configure.in:45: the top level
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from...
configure.in:21: the top level
configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:1: ee_FC_MODFILE is expanded from...
configure.in:23: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:66: ee_MEXEXT is expanded from...
configure.in:45: the top level
configure.in:7: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:7: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:18: installing './compile'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
parallel-tests: installing './test-driver'
Running aclocal/automake in module hutiter
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:62: the top level
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:62: the top level
configure.in:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:8: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:13: installing './compile'
src/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module meshgen2d
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:6: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:14: installing './compile'
src/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module fem
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:47: the top level
configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from...
configure.in:54: the top level
configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:101: the top level
configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_lapack.m4:31: ACX_LAPACK is expanded from...
configure.in:102: the top level
configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:131: ACX_HUTI is expanded from...
configure.in:103: the top level
configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:238: ACX_EIOF is expanded from...
configure.in:104: the top level
configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:411: ACX_ARPACK is expanded from...
configure.in:105: the top level
configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:633: ACX_HYPRE is expanded from...
configure.in:107: the top level
configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:714: ACX_MUMPS is expanded from...
configure.in:108: the top level
configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:553: ACX_UMFPACK is expanded from...
configure.in:109: the top level
configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from...
configure.in:150: the top level
configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from...
configure.in:152: the top level
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:47: the top level
configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from...
configure.in:54: the top level
configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:101: the top level
configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_lapack.m4:31: ACX_LAPACK is expanded from...
configure.in:102: the top level
configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:131: ACX_HUTI is expanded from...
configure.in:103: the top level
configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:238: ACX_EIOF is expanded from...
configure.in:104: the top level
configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:411: ACX_ARPACK is expanded from...
configure.in:105: the top level
configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:633: ACX_HYPRE is expanded from...
configure.in:107: the top level
configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:714: ACX_MUMPS is expanded from...
configure.in:108: the top level
configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:553: ACX_UMFPACK is expanded from...
configure.in:109: the top level
configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from...
configure.in:150: the top level
configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from...
configure.in:152: the top level
configure.in:9: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:9: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:13: installing './compile'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
parallel-tests: installing './test-driver'
Running aclocal/automake in module front
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:7: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:7: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:10: installing './compile'
src/Makefile.am:76: warning: '%'-style pattern rules are a GNU make extension
src/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module elmergrid
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.in:6: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.in:8: installing './compile'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
Running aclocal/automake in module post
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:32: the top level
configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from...
configure.in:73: the top level
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:32: the top level
configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from...
configure.in:73: the top level
configure.in:10: installing './compile'
src/Makefile.am:48: warning: '%'-style pattern rules are a GNU make extension
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
src/camera/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
set -e; for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \
echo; echo CONFIGURING ELMER MODULE $elmermodule; echo; \
(cd $elmermodule && \
autoconf && \
LIBS="-L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib" \
CPPFLAGS=" -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2" \
FCPPFLAGS=" -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include" \
CFLAGS=" -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC" \
CXXFLAGS=" -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC" \
FCFLAGS=" -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC" \
./configure --prefix=/usr --with-metis=/usr \
--with-mpi-dir=/usr --with-mpi-inc-dir=/usr/include/mpi \
--with-blas=-lblas --with-lapack=-llapack \
--with-mumps=dmumps_scotch); \
echo; echo BUILDING ELMER MODULE $elmermodule; echo; \
make -C $elmermodule; \
echo; echo INSTALLING ELMER MODULE $elmermodule; echo; \
make -C $elmermodule install DESTDIR=/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp; \
done
CONFIGURING ELMER MODULE eio
configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:30: the top level
configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from...
configure.in:32: the top level
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for default compilation flags... optimized
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking for xlC... no
checking for pathCC... no
checking for icc... no
checking for CC... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for ranlib... ranlib
checking for ar... ar
checking for ar flags... cru
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for 64 bit compilation flags... let's see what happens
checking for 64 bit CFLAGS... -m64 -fPIC
checking for 64 bit FCFLAGS... -m64 -fPIC
checking for 64 bit CXXFLAGS... -m64 -fPIC
checking size of void*... 8
checking to see if we got 64 bits... oh yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for dummy main to link with Fortran libraries... (cached) none
checking whether we are using the Microsoft C compiler... no
checking for Fortran char* mangling scheme... char_ptr
checking for shl_load in -ldld... no
checking for shl_load... no
checking for shl_findsym... no
checking for dlopen in -ldl... yes
checking for dlopen... yes
checking for dlsym... yes
checking for dlerror... yes
checking for dlclose... yes
checking for ANSI C header files... (cached) yes
checking whether we are using the Microsoft C compiler... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
BUILDING ELMER MODULE eio
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make all-recursive
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
Making all in include
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
Making all in src
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOConstraintAgent.o -MD -MP -MF .deps/EIOConstraintAgent.Tpo -c -o EIOConstraintAgent.o EIOConstraintAgent.cpp
EIOConstraintAgent.cpp:35:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOConstraintAgent.cpp:35:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOConstraintAgent.Tpo .deps/EIOConstraintAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIODualMeshAgent.o -MD -MP -MF .deps/EIODualMeshAgent.Tpo -c -o EIODualMeshAgent.o EIODualMeshAgent.cpp
EIODualMeshAgent.cpp:33:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIODualMeshAgent.cpp:33:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIODualMeshAgent.Tpo .deps/EIODualMeshAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOGeometryAgent.o -MD -MP -MF .deps/EIOGeometryAgent.Tpo -c -o EIOGeometryAgent.o EIOGeometryAgent.cpp
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOGeometryAgent.Tpo .deps/EIOGeometryAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOMeshAgent.o -MD -MP -MF .deps/EIOMeshAgent.Tpo -c -o EIOMeshAgent.o EIOMeshAgent.cpp
EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOMeshAgent.Tpo .deps/EIOMeshAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelDataAgent.o -MD -MP -MF .deps/EIOModelDataAgent.Tpo -c -o EIOModelDataAgent.o EIOModelDataAgent.cpp
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOModelDataAgent.Tpo .deps/EIOModelDataAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelManager.o -MD -MP -MF .deps/EIOModelManager.Tpo -c -o EIOModelManager.o EIOModelManager.cpp
mv -f .deps/EIOModelManager.Tpo .deps/EIOModelManager.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOPartWriter.o -MD -MP -MF .deps/EIOPartWriter.Tpo -c -o EIOPartWriter.o EIOPartWriter.cpp
EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOPartWriter.Tpo .deps/EIOPartWriter.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOSolverAgent.o -MD -MP -MF .deps/EIOSolverAgent.Tpo -c -o EIOSolverAgent.o EIOSolverAgent.cpp
EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
};
^
EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
mv -f .deps/EIOSolverAgent.Tpo .deps/EIOSolverAgent.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_c.o -MD -MP -MF .deps/eio_api_c.Tpo -c -o eio_api_c.o eio_api_c.cpp
mv -f .deps/eio_api_c.Tpo .deps/eio_api_c.Po
rm -f libeioc.a
ar cru libeioc.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_c.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libeioc.a
g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_f.o -MD -MP -MF .deps/eio_api_f.Tpo -c -o eio_api_f.o eio_api_f.cpp
mv -f .deps/eio_api_f.Tpo .deps/eio_api_f.Po
rm -f libeiof.a
ar cru libeiof.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_f.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libeiof.a
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
INSTALLING ELMER MODULE eio
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
Making install in include
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
/usr/bin/install -c -m 644 eio_api.h '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/include'
Making install in src
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
/usr/bin/install -c -m 644 libeioc.a libeiof.a '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libeioc.a )
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libeiof.a )
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio/src'
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/eio'
CONFIGURING ELMER MODULE matc
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for default compilation flags... optimized
checking for ar... ar
checking for ar flags... cru
checking whether we are using the Microsoft C compiler... no
checking for ranlib... ranlib
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for 64 bit compilation flags... let's see what happens
checking for 64 bit CFLAGS... -m64 -fPIC
checking size of void*... 8
checking to see if we got 64 bits... oh yes
checking for main in -lm... yes
checking for main in -lcurses... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for tputs in -lncurses... yes
checking for rl_set_keyboard_input_timeout in -lreadline... yes
checking readline.h usability... no
checking readline.h presence... no
checking for readline.h... no
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
BUILDING ELMER MODULE matc
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make all-recursive
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
Making all in src
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT c3d.o -MD -MP -MF .deps/c3d.Tpo -c -o c3d.o c3d.c
mv -f .deps/c3d.Tpo .deps/c3d.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT clip.o -MD -MP -MF .deps/clip.Tpo -c -o clip.o clip.c
mv -f .deps/clip.Tpo .deps/clip.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT dri_ps.o -MD -MP -MF .deps/dri_ps.Tpo -c -o dri_ps.o dri_ps.c
mv -f .deps/dri_ps.Tpo .deps/dri_ps.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eig.o -MD -MP -MF .deps/eig.Tpo -c -o eig.o eig.c
mv -f .deps/eig.Tpo .deps/eig.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT error.o -MD -MP -MF .deps/error.Tpo -c -o error.o error.c
mv -f .deps/error.Tpo .deps/error.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.c
mv -f .deps/eval.Tpo .deps/eval.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT files.o -MD -MP -MF .deps/files.Tpo -c -o files.o files.c
mv -f .deps/files.Tpo .deps/files.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT funcs.o -MD -MP -MF .deps/funcs.Tpo -c -o funcs.o funcs.c
mv -f .deps/funcs.Tpo .deps/funcs.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra.o -MD -MP -MF .deps/gra.Tpo -c -o gra.o gra.c
mv -f .deps/gra.Tpo .deps/gra.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra_com.o -MD -MP -MF .deps/gra_com.Tpo -c -o gra_com.o gra_com.c
mv -f .deps/gra_com.Tpo .deps/gra_com.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT jacobi.o -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.o jacobi.c
mv -f .deps/jacobi.Tpo .deps/jacobi.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lists.o -MD -MP -MF .deps/lists.Tpo -c -o lists.o lists.c
mv -f .deps/lists.Tpo .deps/lists.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lu.o -MD -MP -MF .deps/lu.Tpo -c -o lu.o lu.c
mv -f .deps/lu.Tpo .deps/lu.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matc.o -MD -MP -MF .deps/matc.Tpo -c -o matc.o matc.c
matc.c: In function 'dogets':
matc.c:406:8: warning: implicit declaration of function 'isatty' [-Wimplicit-function-declaration]
if (isatty(fileno(math_in)) && isatty(fileno(math_out)))
^
mv -f .deps/matc.Tpo .deps/matc.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c
matrix.c: In function 'mtr_rand':
matrix.c:189:25: warning: implicit declaration of function 'time' [-Wimplicit-function-declaration]
if (seed == 0) seed = time(NULL);
^
mv -f .deps/matrix.Tpo .deps/matrix.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT oper.o -MD -MP -MF .deps/oper.Tpo -c -o oper.o oper.c
mv -f .deps/oper.Tpo .deps/oper.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT optim.o -MD -MP -MF .deps/optim.Tpo -c -o optim.o optim.c
mv -f .deps/optim.Tpo .deps/optim.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o parser.c
mv -f .deps/parser.Tpo .deps/parser.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c
mv -f .deps/str.Tpo .deps/str.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT urand.o -MD -MP -MF .deps/urand.Tpo -c -o urand.o urand.c
mv -f .deps/urand.Tpo .deps/urand.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT variable.o -MD -MP -MF .deps/variable.Tpo -c -o variable.o variable.c
mv -f .deps/variable.Tpo .deps/variable.Po
rm -f libmatc.a
ar cru libmatc.a c3d.o clip.o dri_ps.o eig.o error.o eval.o files.o funcs.o gra.o gra_com.o jacobi.o lists.o lu.o matc.o matrix.o oper.o optim.o parser.o str.o urand.o variable.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libmatc.a
gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c
main.c: In function 'main':
main.c:22:9: warning: implicit declaration of function 'mtc_init' [-Wimplicit-function-declaration]
(void)mtc_init( stdin, stdout, stderr );
^
main.c:23:17: warning: implicit declaration of function 'mtc_domath' [-Wimplicit-function-declaration]
str = (char *)mtc_domath( "source(\"mc.ini\")" );
^
main.c:23:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
str = (char *)mtc_domath( "source(\"mc.ini\")" );
^
main.c:49:43: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
if ( *str ) fprintf( stdout, "%s\n", (char *)mtc_domath( str ) );
^
main.c:52:7: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration]
free(str);
^
main.c:52:7: warning: incompatible implicit declaration of built-in function 'free'
main.c:52:7: note: include '<stdlib.h>' or provide a declaration of 'free'
mv -f .deps/main.Tpo .deps/main.Po
gcc -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -o matc main.o libmatc.a -lreadline -lncurses -lcurses -lm -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
INSTALLING ELMER MODULE matc
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
Making install in src
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
/usr/bin/install -c matc '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
/usr/bin/install -c -m 644 libmatc.a '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libmatc.a )
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include/elmer'
/usr/bin/install -c -m 644 elmer/matc.h elmer/fnames.h elmer/gra.h '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include/elmer'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc/src'
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/matc'
CONFIGURING ELMER MODULE elmerparam
configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from...
configure.in:21: the top level
configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:1: ee_FC_MODFILE is expanded from...
configure.in:23: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:66: ee_MEXEXT is expanded from...
configure.in:45: the top level
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for ranlib... ranlib
checking for xlc... no
checking for pathcc... no
checking for icc... no
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking for xlf90... no
checking for pathf90... no
checking for ifort... no
checking for f95... f95
checking whether we are using the GNU Fortran compiler... yes
checking whether f95 accepts -g... yes
checking how to get verbose linking output from f95... -v
checking for Fortran libraries of f95... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for option needed by f95 to find non-local *.mod-files... -I
checking for *.mod-file naming convention... modulename.mod
checking for iargc() declaration needed in Fortran code... !none
iargc_decl = !none
./configure: line 4613: ACX_CHECK_B64FLAGS: command not found
checking for R... yes
checking for matlab... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/iargc_decl.inc
config.status: creating src/R/elmerparam/src/Makevars
config.status: creating src/R/Makefile
config.status: creating src/matlab/Makefile
config.status: creating test/Makefile
config.status: creating test/make.inc
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
BUILDING ELMER MODULE elmerparam
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
(CDPATH="${ZSH_VERSION+.}:" && cd . && autoheader)
configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from...
configure.in:21: the top level
configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:1: ee_FC_MODFILE is expanded from...
configure.in:23: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:88: ee_IARGC_DECL is expanded from...
configure.in:25: the top level
configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acinclude.m4:66: ee_MEXEXT is expanded from...
configure.in:45: the top level
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
make all-recursive
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
Making all in src
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making all in .
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -MT elmerparam.o -MD -MP -MF .deps/elmerparam.Tpo -c -o elmerparam.o elmerparam.c
mv -f .deps/elmerparam.Tpo .deps/elmerparam.Po
cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -MT modelline.o -MD -MP -MF .deps/modelline.Tpo -c -o modelline.o modelline.c
mv -f .deps/modelline.Tpo .deps/modelline.Po
cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -MT dynarray.o -MD -MP -MF .deps/dynarray.Tpo -c -o dynarray.o dynarray.c
mv -f .deps/dynarray.Tpo .deps/dynarray.Po
rm -f libelmerparam.a
ar cru libelmerparam.a elmerparam.o modelline.o dynarray.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libelmerparam.a
f95 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -c -o elmerparamf.o elmerparamf.f90
rm -f libelmerparamf.a
ar cru libelmerparamf.a elmerparamf.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libelmerparamf.a
f95 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -c -o ElmerParam.o ElmerParam.f90
f95 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -o ElmerParam ElmerParam.o libelmerparamf.a libelmerparam.a -L/usr/lib -lmatc -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making all in R
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making all in test
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
INSTALLING ELMER MODULE elmerparam
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
Making install in src
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making install in .
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
/usr/bin/install -c ElmerParam '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
/usr/bin/install -c elmerparam.mod /build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
/usr/bin/install -c -m 644 libelmerparam.a libelmerparamf.a '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libelmerparam.a )
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libelmerparamf.a )
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
/usr/bin/install -c -m 644 elmerparam.h '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making install in R
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R'
R CMD build elmerparam
* checking for file 'elmerparam/DESCRIPTION' ... OK
* preparing 'elmerparam':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Warning: /tmp/RtmpKigwgq/Rbuild25919484c24/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section'
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'elmerparam_1.0.tar.gz'
test -z "/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib/R" || mkdir -p /build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib/R
R CMD INSTALL -l /build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib/R elmerparam
* installing *source* package 'elmerparam' ...
** libs
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R/elmerparam/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c elmerparam_rwrapper.c -o elmerparam_rwrapper.o
elmerparam_rwrapper.c: In function 'elmerparam_rwrapper':
elmerparam_rwrapper.c:55:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
tagp = CHAR(tag);
^
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o elmerparam.so elmerparam_rwrapper.o -L/usr/lib -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -lelmerparam -lmatc -L/usr/lib/R/lib -lR
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R/elmerparam/src'
installing to /build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib/R/elmerparam/libs
** R
** preparing package for lazy loading
** help
Warning: /build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R/elmerparam/man/elmer-package.Rd:33: All text must be in a section
Warning: /build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section'
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (elmerparam)
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src/R'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/src'
Making install in test
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam/test'
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/elmerparam'
CONFIGURING ELMER MODULE hutiter
configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:62: the top level
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for default compilation flags... optimized
checking for xlc... no
checking for pathcc... no
checking for icc... no
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for ranlib... ranlib
checking for ar... ar
checking for ar flags... cru
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for 64 bit compilation flags... let's see what happens
checking for 64 bit CFLAGS... -m64 -fPIC
checking for 64 bit FCFLAGS... -m64 -fPIC
checking for 64 bit FFLAGS... -m64 -fPIC
checking size of void*... 8
checking to see if we got 64 bits... oh yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether we are using the Microsoft C compiler... no
checking for e_wsfe in -lg2c... no
checking for saxpy_ in -lblas... checking for in ... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating examples/Makefile
config.status: creating examples/ex1/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps
BUILDING ELMER MODULE hutiter
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make all-recursive
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
Making all in src
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_C.o huti_aux_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_D.o huti_aux_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_S.o huti_aux_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_Z.o huti_aux_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_C.o huti_bicgstab_2_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_D.o huti_bicgstab_2_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_S.o huti_bicgstab_2_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_Z.o huti_bicgstab_2_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_C.o huti_bicgstab_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_D.o huti_bicgstab_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_S.o huti_bicgstab_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_Z.o huti_bicgstab_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_C.o huti_cg_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_D.o huti_cg_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_C.o huti_cgs_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_D.o huti_cgs_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_S.o huti_cg_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_S.o huti_cgs_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_Z.o huti_cgs_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_Z.o huti_cg_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_C.o huti_gmres_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_D.o huti_gmres_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_S.o huti_gmres_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_Z.o huti_gmres_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_C.o huti_qmr_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_D.o huti_qmr_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_S.o huti_qmr_S.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_Z.o huti_qmr_Z.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_C.o huti_tfqmr_C.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_D.o huti_tfqmr_D.F90
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_S.o huti_tfqmr_S.F90
cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_main.o -MD -MP -MF .deps/huti_main.Tpo -c -o huti_main.o huti_main.c
mv -f .deps/huti_main.Tpo .deps/huti_main.Po
cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_C.o -MD -MP -MF .deps/huti_sfe_c_C.Tpo -c -o huti_sfe_c_C.o huti_sfe_c_C.c
huti_sfe_c_C.c: In function 'huti_c_cg_':
huti_sfe_c_C.c:124:3: warning: implicit declaration of function 'HUTI_Init' [-Wimplicit-function-declaration]
HUTI_Init();
^
mv -f .deps/huti_sfe_c_C.Tpo .deps/huti_sfe_c_C.Po
cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_D.o -MD -MP -MF .deps/huti_sfe_c_D.Tpo -c -o huti_sfe_c_D.o huti_sfe_c_D.c
huti_sfe_c_D.c: In function 'huti_d_cg_':
huti_sfe_c_D.c:124:3: warning: implicit declaration of function 'HUTI_Init' [-Wimplicit-function-declaration]
HUTI_Init();
^
mv -f .deps/huti_sfe_c_D.Tpo .deps/huti_sfe_c_D.Po
cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_S.o -MD -MP -MF .deps/huti_sfe_c_S.Tpo -c -o huti_sfe_c_S.o huti_sfe_c_S.c
huti_sfe_c_S.c: In function 'huti_s_cg_':
huti_sfe_c_S.c:124:3: warning: implicit declaration of function 'HUTI_Init' [-Wimplicit-function-declaration]
HUTI_Init();
^
mv -f .deps/huti_sfe_c_S.Tpo .deps/huti_sfe_c_S.Po
cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_Z.o -MD -MP -MF .deps/huti_sfe_c_Z.Tpo -c -o huti_sfe_c_Z.o huti_sfe_c_Z.c
huti_sfe_c_Z.c: In function 'huti_z_cg_':
huti_sfe_c_Z.c:125:3: warning: implicit declaration of function 'HUTI_Init' [-Wimplicit-function-declaration]
HUTI_Init();
^
mv -f .deps/huti_sfe_c_Z.Tpo .deps/huti_sfe_c_Z.Po
gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_Z.o huti_tfqmr_Z.F90
rm -f libhuti.a
ar cru libhuti.a huti_aux_C.o huti_aux_D.o huti_aux_S.o huti_aux_Z.o huti_bicgstab_2_C.o huti_bicgstab_2_D.o huti_bicgstab_2_S.o huti_bicgstab_2_Z.o huti_bicgstab_C.o huti_bicgstab_D.o huti_bicgstab_S.o huti_bicgstab_Z.o huti_cg_C.o huti_cg_D.o huti_cgs_C.o huti_cgs_D.o huti_cg_S.o huti_cgs_S.o huti_cgs_Z.o huti_cg_Z.o huti_gmres_C.o huti_gmres_D.o huti_gmres_S.o huti_gmres_Z.o huti_qmr_C.o huti_qmr_D.o huti_qmr_S.o huti_qmr_Z.o huti_tfqmr_C.o huti_tfqmr_D.o huti_tfqmr_S.o huti_main.o huti_sfe_c_C.o huti_sfe_c_D.o huti_sfe_c_S.o huti_sfe_c_Z.o huti_tfqmr_Z.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libhuti.a
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
Making all in include
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
Making all in examples
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
Making all in ex1
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
INSTALLING ELMER MODULE hutiter
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
Making install in src
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
/usr/bin/install -c -m 644 libhuti.a '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib'
( cd '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib' && ranlib libhuti.a )
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/src'
Making install in include
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
/usr/bin/install -c -m 644 huti_defs.h huti_fdefs.h '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/include'
Making install in examples
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
Making install in ex1
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples/ex1'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter/examples'
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/hutiter'
CONFIGURING ELMER MODULE meshgen2d
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for default compilation flags... optimized
checking for answer to meaning of life... 42
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for main in -lstdc++... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether to enable maintainer-specific portions of Makefiles... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/include/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps
BUILDING ELMER MODULE meshgen2d
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make all-recursive
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
Making all in src
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
Making all in include
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGGridMesh.o -MD -MP -MF .deps/BGGridMesh.Tpo -c -o BGGridMesh.o BGGridMesh.cpp
mv -f .deps/BGGridMesh.Tpo .deps/BGGridMesh.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGTriangleMesh.o -MD -MP -MF .deps/BGTriangleMesh.Tpo -c -o BGTriangleMesh.o BGTriangleMesh.cpp
mv -f .deps/BGTriangleMesh.Tpo .deps/BGTriangleMesh.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGVertex.o -MD -MP -MF .deps/BGVertex.Tpo -c -o BGVertex.o BGVertex.cpp
mv -f .deps/BGVertex.Tpo .deps/BGVertex.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Body.o -MD -MP -MF .deps/Body.Tpo -c -o Body.o Body.cpp
mv -f .deps/Body.Tpo .deps/Body.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryElement.o -MD -MP -MF .deps/BoundaryElement.Tpo -c -o BoundaryElement.o BoundaryElement.cpp
mv -f .deps/BoundaryElement.Tpo .deps/BoundaryElement.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryLayer.o -MD -MP -MF .deps/BoundaryLayer.Tpo -c -o BoundaryLayer.o BoundaryLayer.cpp
mv -f .deps/BoundaryLayer.Tpo .deps/BoundaryLayer.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Connect.o -MD -MP -MF .deps/Connect.Tpo -c -o Connect.o Connect.cpp
mv -f .deps/Connect.Tpo .deps/Connect.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Element.o -MD -MP -MF .deps/Element.Tpo -c -o Element.o Element.cpp
mv -f .deps/Element.Tpo .deps/Element.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT GeometryEdge.o -MD -MP -MF .deps/GeometryEdge.Tpo -c -o GeometryEdge.o GeometryEdge.cpp
mv -f .deps/GeometryEdge.Tpo .deps/GeometryEdge.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp
mv -f .deps/main.Tpo .deps/main.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Mesh.o -MD -MP -MF .deps/Mesh.Tpo -c -o Mesh.o Mesh.cpp
mv -f .deps/Mesh.Tpo .deps/Mesh.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshNode.o -MD -MP -MF .deps/MeshNode.Tpo -c -o MeshNode.o MeshNode.cpp
mv -f .deps/MeshNode.Tpo .deps/MeshNode.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshParser.o -MD -MP -MF .deps/MeshParser.Tpo -c -o MeshParser.o MeshParser.cpp
mv -f .deps/MeshParser.Tpo .deps/MeshParser.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp
mv -f .deps/Node.Tpo .deps/Node.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT PQ.o -MD -MP -MF .deps/PQ.Tpo -c -o PQ.o PQ.cpp
mv -f .deps/PQ.Tpo .deps/PQ.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadElement.o -MD -MP -MF .deps/QuadElement.Tpo -c -o QuadElement.o QuadElement.cpp
mv -f .deps/QuadElement.Tpo .deps/QuadElement.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadLayer.o -MD -MP -MF .deps/QuadLayer.Tpo -c -o QuadLayer.o QuadLayer.cpp
mv -f .deps/QuadLayer.Tpo .deps/QuadLayer.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSMFVoronoiSegment.o -MD -MP -MF .deps/SSMFVoronoiSegment.Tpo -c -o SSMFVoronoiSegment.o SSMFVoronoiSegment.cpp
mv -f .deps/SSMFVoronoiSegment.Tpo .deps/SSMFVoronoiSegment.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSSFVoronoiSegment.o -MD -MP -MF .deps/SSSFVoronoiSegment.Tpo -c -o SSSFVoronoiSegment.o SSSFVoronoiSegment.cpp
mv -f .deps/SSSFVoronoiSegment.Tpo .deps/SSSFVoronoiSegment.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleElement.o -MD -MP -MF .deps/TriangleElement.Tpo -c -o TriangleElement.o TriangleElement.cpp
mv -f .deps/TriangleElement.Tpo .deps/TriangleElement.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleNELayer.o -MD -MP -MF .deps/TriangleNELayer.Tpo -c -o TriangleNELayer.o TriangleNELayer.cpp
mv -f .deps/TriangleNELayer.Tpo .deps/TriangleNELayer.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Vertex.o -MD -MP -MF .deps/Vertex.Tpo -c -o Vertex.o Vertex.cpp
mv -f .deps/Vertex.Tpo .deps/Vertex.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiSegment.o -MD -MP -MF .deps/VoronoiSegment.Tpo -c -o VoronoiSegment.o VoronoiSegment.cpp
mv -f .deps/VoronoiSegment.Tpo .deps/VoronoiSegment.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiVertex.o -MD -MP -MF .deps/VoronoiVertex.Tpo -c -o VoronoiVertex.o VoronoiVertex.cpp
mv -f .deps/VoronoiVertex.Tpo .deps/VoronoiVertex.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VSVertex.o -MD -MP -MF .deps/VSVertex.Tpo -c -o VSVertex.o VSVertex.cpp
mv -f .deps/VSVertex.Tpo .deps/VSVertex.Po
g++ -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o ElmerMesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib
g++ -I/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o Mesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
INSTALLING ELMER MODULE meshgen2d
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
Making install in src
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
Making install in include
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src/include'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[4]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
/bin/mkdir -p '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
/usr/bin/install -c ElmerMesh2D Mesh2D '/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d/src'
make[2]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[3]: Entering directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[2]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
make[1]: Leaving directory '/build/elmerfem-6.1.0.svn.5396.dfsg2/meshgen2d'
CONFIGURING ELMER MODULE fem
configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from...
acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from...
configure.in:47: the top level
configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from...
configure.in:54: the top level
configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_blas.m4:33: ACX_BLAS is expanded from...
configure.in:101: the top level
configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_lapack.m4:31: ACX_LAPACK is expanded from...
configure.in:102: the top level
configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:131: ACX_HUTI is expanded from...
configure.in:103: the top level
configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:238: ACX_EIOF is expanded from...
configure.in:104: the top level
configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:411: ACX_ARPACK is expanded from...
configure.in:105: the top level
configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:633: ACX_HYPRE is expanded from...
configure.in:107: the top level
configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:714: ACX_MUMPS is expanded from...
configure.in:108: the top level
configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
acx_elmer.m4:553: ACX_UMFPACK is expanded from...
configure.in:109: the top level
configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from...
configure.in:150: the top level
configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from...
acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from...
configure.in:152: the top level
configure: WARNING: unrecognized options: --with-metis
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/build/elmerfem-6.1.0.svn.5396.dfsg2/fem/missing: Unknown `--is-lightweight' option
Try `/build/elmerfem-6.1.0.svn.5396.dfsg2/fem/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for ftello... yes
checking for fseeko... yes
checking for answer to meaning of life... 42
checking for default compilation flags... optimized
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking for xlC... no
checking for pathCC... no
checking for icc... no
checking for CC... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for ranlib... ranlib
checking for ar... ar
checking for ar flags... cru
checking whether we are using the Microsoft C compiler... no
checking for /lib/cpp... yes
checking for C++ linker flags... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lgcc_s -lgcc_s
checking how to run the C preprocessor... /lib/cpp
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for 64 bit compilation flags... let's see what happens
checking for 64 bit CFLAGS... -m64 -fPIC
checking for 64 bit FCFLAGS... -m64 -fPIC
checking for 64 bit CXXFLAGS... -m64 -fPIC
checking for 64 bit FFLAGS... -m64 -fPIC
checking size of void*... 8
checking to see if we got 64 bits... oh yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/build/elmerfem-6.1.0.svn.5396.dfsg2/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for Fortran char* mangling scheme... char_ptr
checking if fortran implements CONTIGUOUS attribute... yes
checking for fortran intrinsic etime... found
checking for fortran intrinsic flush... found
checking for shl_load in -ldld... no
checking for shl_load... no
checking for shl_findsym... no
checking for dlopen in -ldl... yes
checking for dlopen... yes
checking for dlsym... yes
checking for dlerror... yes
checking for dlclose... yes
checking for mpi-directory... /usr
checking for mpi-lib-directory... /usr/lib
checking for mpi-inc-directory... /usr/include/mpi
checking for mpi-library...
checking for mpi-include...
checking for compilation of an MPI program... seems ok
checking for mpf90... no
checking for mpxlf90... no
checking for saxpy_ in -lblas... checking for in ... yes
checking for cheev_ in -llapack... yes
checking for huti_d_gmres_ in -lhuti... yes
checking for eio_init_ in -leiof... yes
checking for dseupd_ in -larpack... yes
checking for pdneupd_ in -lparpack... no
configure: WARNING: No parallel arpack found.
checking for HYPRE_IJMatrixCreate in -lHYPRE_IJ_mv... yes
checking for dmumps_ in -ldmumps_scotch... yes
checking for umfpack_di_defaults in -lumfpack... yes
checking for mtc_init in -lmatc... yes
checking for main in -lm... yes
configure: error: The MPI version needs parpack. Disabling MPI.
debian/rules:89: recipe for target 'stamp-build' failed
make: *** [stamp-build] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
I: copying local configuration
E: Failed autobuilding of package
I: user script /var/cache/pbuilder/build//14305/tmp/hooks/C10shell starting
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
vim-common vim-runtime
Suggested packages:
ctags vim-doc vim-scripts
The following NEW packages will be installed:
less vim vim-common vim-runtime
0 upgraded, 4 newly installed, 0 to remove and 21 not upgraded.
Need to get 126 kB/6633 kB of archives.
After this operation, 30.5 MB of additional disk space will be used.
Get:1 http://thecus:3142/cdn.debian.net/debian sid/main amd64 less amd64 481-2.1 [126 kB]
Fetched 126 kB in 0s (578 kB/s)
Selecting previously unselected package vim-common.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 24413 files and directories currently installed.)
Preparing to unpack .../vim-common_2%3a7.4.1689-3_amd64.deb ...
Unpacking vim-common (2:7.4.1689-3) ...
Selecting previously unselected package less.
Preparing to unpack .../less_481-2.1_amd64.deb ...
Unpacking less (481-2.1) ...
Selecting previously unselected package vim-runtime.
Preparing to unpack .../vim-runtime_2%3a7.4.1689-3_all.deb ...
Adding 'diversion of /usr/share/vim/vim74/doc/help.txt to /usr/share/vim/vim74/doc/help.txt.vim-tiny by vim-runtime'
Adding 'diversion of /usr/share/vim/vim74/doc/tags to /usr/share/vim/vim74/doc/tags.vim-tiny by vim-runtime'
Unpacking vim-runtime (2:7.4.1689-3) ...
Selecting previously unselected package vim.
Preparing to unpack .../vim_2%3a7.4.1689-3_amd64.deb ...
Unpacking vim (2:7.4.1689-3) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up vim-common (2:7.4.1689-3) ...
Setting up less (481-2.1) ...
Setting up vim-runtime (2:7.4.1689-3) ...
Setting up vim (2:7.4.1689-3) ...
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/editor (editor) in auto mode
############################
######## ERROR HOOK ########
############################
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