Bug#835680: mathgl: FTBFS: complex_io.cpp:32:18: fatal error: hdf5.h: No such file or directory

Lucas Nussbaum lucas at debian.org
Sun Aug 28 09:16:27 UTC 2016


Source: mathgl
Version: 2.3.4-1
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20160828 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++   -DHAVE_MEMRCHR -DMGL_HAVE_GSL2 -DMGL_SRC -DNO_COLOR_ARRAY -Dmgl_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/<<PKGBUILDDIR>>/src/prc  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -fvisibility-inlines-hidden -fPIC   -o CMakeFiles/mgl.dir/complex_io.cpp.o -c /<<PKGBUILDDIR>>/src/complex_io.cpp
> /<<PKGBUILDDIR>>/src/complex_io.cpp:32:18: fatal error: hdf5.h: No such file or directory
>  #include <hdf5.h>
>                   ^
> compilation terminated.
> src/CMakeFiles/mgl.dir/build.make:305: recipe for target 'src/CMakeFiles/mgl.dir/complex_io.cpp.o' failed
> make[3]: *** [src/CMakeFiles/mgl.dir/complex_io.cpp.o] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2016/08/28/mathgl_2.3.4-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.



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