Bug#816101: petsc: FTBFS on mipsel - timeout while running the test suite

[Andreas Beckmann]

Source: petsc
Version: 3.6.2.dfsg1-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

petsc FTBFS on mipsel:

https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.6.2.dfsg1-3%2Bb3&stamp=1455322055

dh_auto_test -plibpetsc3.6.2-dbg -- \
  PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug \
  LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
	make -j1 test PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make[2]: Entering directory '/«PKGBUILDDIR»'
Running test examples to verify correct installation
Using PETSC_DIR=/«PKGBUILDDIR» and PETSC_ARCH=mipsel-linux-gnu-real-debug

r detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/«PKGBUILDDIR»/src/snes/examples/tutorials ex19
********************************************************************************cxx -o ex19.o -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security   -fPIC  -Wdate-time -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/include -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include/openmpi  -Wdate-time -D_FORTIFY_SOURCE=2  `pwd`/ex19.c
mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat -Werror=format-security   -o ex19  ex19.o -L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib -L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib  -lpetsc_real -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod -lklu -lsuperlu -lscalapack-openmpi -L/usr/lib -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lfftw3 -lfftw3_mpi -lhwloc -lssl -lcrypto -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 -L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx -lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 -L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -L/usr/lib/mipsel-linux-gnu -ldl -L/usr/lib/openmpi/lib -lmpi -lgcc_s -lpthread -ldl 
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
--------------------------------------------------------------------------
A deprecated MCA variable value was specified in the environment or
on the command line.  Deprecated MCA variables should be avoided;
they may disappear in future releases.

  Deprecated variable: orte_rsh_agent
  New variable:        plm_rsh_agent
--------------------------------------------------------------------------
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
make[2]: *** wait: No child processes.  Stop.
make[2]: *** Waiting for unfinished jobs....
make[2]: *** wait: No child processes.  Stop.
debian/rules:181: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Terminated
E: Caught signal ‘Terminated’: terminating immediately
debian/rules:106: recipe for target 'build-arch' failed
make: *** [build-arch] Terminated
Build killed with signal TERM after 150 minutes of inactivity
*