Bug#831406: yorick: FTBFS: dpkg-shlibdeps: error: no dependency information found for /usr/lib/libmpich.so.12 (used by debian/yorick-mpy-mpich2/usr/lib/yorick/bin/mpy.mpich2)
Chris Lamb
lamby at debian.org
Fri Jul 15 16:27:58 UTC 2016
Source: yorick
Version: 2.2.04+dfsg1-5
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
Dear Maintainer,
yorick fails to build from source in unstable/amd64:
[..]
"manual/yorick_prt.html"
mkdir -p ../../build/doc/images
cp -p images/*.* ../../build/doc//images/
mkdir -p ../../build/doc/
cp skull.css style.css ../../build/doc/
make[1]: Leaving directory '/home/lamby/temp/cdt.20160715182504.pdcokDfkyE.yorick/yorick-2.2.04+dfsg1/doc/html'
cp doc/html/packinfo.txt build/00yorick.packinfo
cp doc/html/keywords.txt build/00yorick.keywords
cp doc/html/aliases.txt build/00yorick.aliases
find build/doc/manual -name "*.html" -not -name yorick_prt.html | xargs sed -e 's|^<body .*$|&<div id="l-bar"><div id="links"><div class="nav1"><A href="http://dhmunro.github.io/yorick-doc/">Web Home</A></div><div class="nav1"><a href="../README.html">Getting Started</a></div><div class="nav1"><A href="../manual/index.html">Manual</A></div><div class="nav1"><A href="../html_xref/packages.html">Packages</A></div><div class="nav1"><a href="../refcard/index.html">Quick Reference</a></div></div><div id="bottomnav"></div></div><div id="banner"></div><div id="content">|' -e 's|</body>|</div>&|' -i
sed 's|yorick_1.html|index.html|' -i build/doc/*.html build/doc/*/*.html
touch build-indep-stamp
fakeroot debian/rules binary
dh_testdir
xvfb-run relocate/bin/yorick -batch testfull.i
Begin Yorick parser test...
Test 17x10x10 binary operators...
Test unary operators...
Test array manipulation functions...
Test struct instancing and indexing...
Test range functions...
Test math functions...
Test informational functions...
Test func declarations...
Test binary I/O functions...
Test binary I/O to netCDF...
Test ASCII I/O functions...
Test string manipulation functions...
Test list functions...
Test catch function...
End of Yorick parser test, 0 goofs
begin string manipulation test...
end string manipulation test, 0 goofs
PASSED oxy test1
PASSED oxy test2
PASSED oxy test3
PASSED closure called with no arguments
PASSED all closure tests
PASSED alternate closure tests
PASSED oxy friend test
PASSED oxy sibling test
Zeroth test is pdtest files:
Testing sun_primitives db1 write...
Testing dec_primitives db1 write...
Testing cray_primitives db1 write...
Testing mac_primitives db1 write...
Testing macl_primitives db1 write...
Testing pc_primitives db1 write...
Testing sun3_primitives db1 write...
Testing vax_primitives db1 write...
Testing vaxg_primitives db1 write...
Testing xdr_primitives db1 write...
Testing sun_primitives db1 write w/PDB-style pointers...
Testing dec_primitives db1 write w/PDB-style pointers...
Testing cray_primitives db1 write w/PDB-style pointers...
Testing native db1 write...
First test is to write flat files:
Write using native formats
Write using DEC primitive formats
Write using Sun primitive formats
Write using Cray primitive formats
Second test is to write files with pointers:
Write using native formats
Write using DEC primitive formats
Write using Sun primitive formats
Write using Cray primitive formats
Third test is to update pointered files with flat data:
Update using native formats
Update using DEC primitive formats
Update using Sun primitive formats
Update using Cray primitive formats
Fourth test is exhaustive check of other primitive formats:
Testing Sun format
Testing i86 format
Testing alpha format
Testing sgi64 format
Testing DEC format
Testing Cray format
Testing XDR format
Testing Mac format
Testing Mac long-double format
Testing IBM PC format
Testing VAX format
Testing VAX G-double format
Testing Sun-3/Sun-2 format
Testing native format
Timing Category CPU sec System sec Wall sec
Time to write/test all formats 0.004 0.000 0.007
Fifth test is check of Contents Log machinery:
Contents Log -- testing Sun format
Contents Log -- testing DEC format
Contents Log -- testing Cray format
Contents Log -- testing VAX format
Contents Log -- testing native format
Non-PDB Contents Log -- testing Sun format
Non-PDB Contents Log -- testing DEC format
Non-PDB Contents Log -- testing Cray format
Non-PDB Contents Log -- testing VAX format
Non-PDB Contents Log -- testing native format
Sixth test is flat history files (be patient):
History -- testing Sun format
History -- testing DEC format
History -- testing Cray format
History -- testing VAX format
History -- testing native format
Timing Category CPU sec System sec Wall sec
Time to write history files 0.060 0.000 0.063
Seventh test is a pointered history file:
Eighth test is vsave in-memory files:
Ninth test is vpack in-memory files:
Shock tracker timing test:
Timing Category CPU sec System sec Wall sec
Time per pass 0.002 0.000 0.002
Total time 0.036 0.000 0.036
Escape factor timing test:
Timing Category CPU sec System sec Wall sec
Time per pass 0.007 0.000 0.007
Total time 0.104 0.004 0.105
Computing exponentials 0.084 0.004 0.081
Zone generator timing test:
Timing Category CPU sec System sec Wall sec
Time per pass 0.001 0.000 0.001
Total time 0.056 0.000 0.057
testing fft routines...
Timing Category CPU sec System sec Wall sec
FFT elapsed time 0.040 0.000 0.040
testing LU decomposition routine...
Timing Category CPU sec System sec Wall sec
LU elapsed time 0.032 0.000 0.030
testing QR decomposition routine...
Timing Category CPU sec System sec Wall sec
QR elapsed time 0.020 0.000 0.022
testing SVD routine...
Timing Category CPU sec System sec Wall sec
SVD elapsed time 0.040 0.000 0.039
using size 200
norm. resid resid machep x(1) x(n)
3.44281520e+00 3.05755421e-13 2.22044605e-16 1.00000000e+00 1.00000000e+00
times are reported for matrices of order 200
times for array with leading dimension of 200
dgesv mflops unit ratio
0.000e+00 5.413e+06 3.695e-07 0.000e+00
4.000e-03 1.353e+03 1.478e-03 7.143e-02
0.000e+00 5.413e+06 3.695e-07 0.000e+00
result of 50 passes through solver
dgesv mflops unit ratio
1.760e-03 3.076e+03 6.502e-04 3.143e-02
Timing Category CPU sec System sec Wall sec
Lissajous test 0.008 0.000 0.011
Frames per wall clock second= 4495.19
Timing Category CPU sec System sec Wall sec
Lissajous test 0.012 0.000 0.012
Frames per wall clock second= 4254.19
Each of the six tests will run no more than one minute,
so just be patient if you have a slow terminal.
50 frames of hollow 51-by-51 mesh direct
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.012 0.000 0.008
Gist graphics 0.000 0.000 0.006
Yorick+Gist total 0.012 0.000 0.014
Frames per second (total/gist)=3650.956/8162.304
50 frames of 51-by-51 cell array direct
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.004 0.000 0.008
Gist graphics 0.008 0.000 0.018
Yorick+Gist total 0.012 0.000 0.025
Frames per second (total/gist)= 2002.111/2840.764
50 frames of filled 51-by-51 mesh direct
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.004 0.004 0.007
Gist graphics 0.020 0.004 0.131
Yorick+Gist total 0.024 0.008 0.138
Frames per second (total/gist)= 368.707/389.582
50 frames of hollow 51-by-51 mesh animated
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.008 0.000 0.007
Gist graphics 0.004 0.000 0.007
Yorick+Gist total 0.012 0.000 0.014
Frames per second (total/gist)=3577.920/7012.966
50 frames of 51-by-51 cell array animated
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.008 0.000 0.007
Gist graphics 0.004 0.000 0.018
Yorick+Gist total 0.012 0.000 0.025
Frames per second (total/gist)= 2046.805/2841.028
50 frames of filled 51-by-51 mesh animated
Timing Category CPU sec System sec Wall sec
Yorick interpreter 0.008 0.000 0.007
Gist graphics 0.024 0.000 0.127
Yorick+Gist total 0.032 0.000 0.134
Frames per second (total/gist)= 379.729/402.098
200.000000 frames of filled mesh drumhead completed in 4.416504 sec
Rate for filled mesh is 2270.147560 frames/(CPU sec), 45.283660 frames(wall sec)
200.000000 frames of wireframe surface drumhead completed in 4.554718 sec
Rate for filled mesh is 2081.165453 frames/(CPU sec), 43.909548 frames(wall sec)
200.000000 frames of filled surface drumhead completed in 4.320696 sec
Rate for filled mesh is 2270.147560 frames/(CPU sec), 46.287766 frames(wall sec)
Yorick comprehensive graphics test.
Each frame will be described at the terminal.
Test 1 Commands: window, 0, wait=1, dpi=100; plg, [0,1]
Test 2 Commands: window, 0, wait=1; plg, [0,1]
Test 3 Commands: plg, [1,0]
Test 4 Commands: logxy, 1, 0
Test 5 Commands: logxy, 0, 0
Test 6 Commands: limits, 1.2, 1.8, 0.2, 0.8
Test 7 Commands: range, 0.4, 0.6
Test 8 Commands: limits
Test 9 Commands: fma; plg, sin(x), x
Five cycles of a sine wave on a new frame.
Before you continue, try clicking with the mouse buttons:
Left button zooms in, right button zooms out, middle no zoom
In each case, the point where you press the mouse button will
be translated to the point where you release the mouse button.
Test 10 Commands: pledit, marks=0, width=6, type="dash"
Test 11 Commands: plg, r*sin(x), r*cos(x), color=-4-i
Test 12 Commands: pltitle, "Colored nested cardioids"; plq
1: A: plg, r*sin(x), r*cos(x)
2: B: plg, r*sin(x), r*cos(x)
3: C: plg, r*sin(x), r*cos(x)
4: D: plg, r*sin(x), r*cos(x)
5: E: plg, r*sin(x), r*cos(x)
6: F: plg, r*sin(x), r*cos(x)
Adds the title above the upper tick marks.
Test 13 Commands: pledit, color="fg", type=0, marker=i
Changes the colors to foreground, types to no lines.
Test 14 Commands: pledit, marks=0, type=i
Changes line types to solid, dash, dot, dashdo, dashdotdot.
Test 15 Commands: plm, y, x
Test 16 Commands: plv, v, u, y, x
Test 17 Commands: plc, z, y,x; plm, y,x, boundary=1, type=2
Test 18 Commands: plf, zncen(z), y,x; plc, z, y,x
Test 19 Commands: palette, "<various>.gp"
After each new palette is installed, hit <RETURN> for the next,
or q<RETURN> to begin test 20. There are 6 palettes altogether.
Test 20 Commands: window, style="<various>.gs"
After each new style is installed, hit <RETURN> for the next,
or q<RETURN> to begin test 21. There are 5 styles altogether.
Test 21 Commands: pli, image
Test 22 Commands: pldj, x0, y0, x1, y1
Test 23 Commands: plfp, z, y, x, n
Test 24 Commands: plfc, z, y,x; plm, y,x, boundary=1, type=2
Yorick comprehensive plt command test.
Each frame will be described at the terminal.
Test 1 Justification right|center|left cap|half|base
Test 2 Justification right|center|left top|half|bottom
Test 3 multiline version, short line first
Test 4 multiline version, long line first
Test 5 escape sequences, cap|half|base
Test 6 escape sequences, top|half|bottom
Test 7 multiline escape sequences
Test 8 multiline escape sequences part 2
Test 9 text orientation
/usr/bin/make -f debian/rules DH_OPTIONS=-a binary-common
make[1]: Entering directory '/home/lamby/temp/cdt.20160715182504.pdcokDfkyE.yorick/yorick-2.2.04+dfsg1'
dh_testdir
dh_testroot
dh_prep
dh_installdirs
dh_install
dh_installchangelogs
dh_installdocs
dh_installexamples
dh_installmenu
dh_installinfo
dh_installdebconf
dh_installman
dh_link
dh_strip -pyorick --dbg-package=yorick-dbg
dh_strip -pyorick-dev -pyorick-mpy-openmpi -pyorick-mpy-mpich2
dh_usrlocal
dh_compress
dh_fixperms
dh_installdeb
dh_shlibdeps
dpkg-shlibdeps: warning: /usr/lib/libmpich.so.12 has an unexpected SONAME (libmpi.so.12)
dpkg-shlibdeps: error: no dependency information found for /usr/lib/libmpich.so.12 (used by debian/yorick-mpy-mpich2/usr/lib/yorick/bin/mpy.mpich2)
Hint: check if the library actually comes from a package.
dh_shlibdeps: dpkg-shlibdeps -Tdebian/yorick-mpy-mpich2.substvars debian/yorick-mpy-mpich2/usr/lib/yorick/bin/mpy.mpich2 returned exit code 2
debian/rules:121: recipe for target 'binary-common' failed
make[1]: *** [binary-common] Error 2
make[1]: Leaving directory '/home/lamby/temp/cdt.20160715182504.pdcokDfkyE.yorick/yorick-2.2.04+dfsg1'
debian/rules:152: recipe for target 'binary-arch' failed
make: *** [binary-arch] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby at debian.org / chris-lamb.co.uk
`-
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