Bug#828716: python-hdf5storage: FTBFS: sphinx.ext.mathjax: other math package is already loaded

Mon Jun 27 06:09:17 UTC 2016

Source: python-hdf5storage
Version: 0.1.13-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

python-hdf5storage fails to build from source in unstable/amd64:

  [..]

  Get:28 http://httpredir.debian.org/debian sid/main amd64 python-sphinx all 1.4.4-2 [427 kB]
  Get:29 http://httpredir.debian.org/debian sid/main amd64 python-numpydoc all 0.5-2 [29.5 kB]
  Get:30 http://httpredir.debian.org/debian sid/main amd64 python-nose all 1.3.7-1 [132 kB]
  Get:31 http://httpredir.debian.org/debian sid/main amd64 python-setuptools all 20.10.1-1.1 [203 kB]
  Get:32 http://httpredir.debian.org/debian sid/main amd64 python-decorator all 4.0.6-1 [12.7 kB]
  Get:33 http://httpredir.debian.org/debian sid/main amd64 python-scipy amd64 0.17.1-1 [8684 kB]
  Get:34 http://httpredir.debian.org/debian sid/main amd64 python3-all amd64 3.5.1-4 [928 B]
  Get:35 http://httpredir.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.11.1~rc1-1 [1772 kB]
  Get:36 http://httpredir.debian.org/debian sid/main amd64 python3-six all 1.10.0-3 [14.4 kB]
  Get:37 http://httpredir.debian.org/debian sid/main amd64 python3-h5py amd64 2.6.0-1+b1 [498 kB]
  Get:38 http://httpredir.debian.org/debian sid/main amd64 python3-pkg-resources all 20.10.1-1.1 [112 kB]
  Get:39 http://httpredir.debian.org/debian sid/main amd64 python3-nose all 1.3.7-1 [132 kB]
  Get:40 http://httpredir.debian.org/debian sid/main amd64 python3-setuptools all 20.10.1-1.1 [122 kB]
  Get:41 http://httpredir.debian.org/debian sid/main amd64 python3-decorator all 4.0.6-1 [12.8 kB]
  Get:42 http://httpredir.debian.org/debian sid/main amd64 python3-scipy amd64 0.17.1-1 [8290 kB]
  Fetched 31.6 MB in 0s (101 MB/s)
  Selecting previously unselected package python-all.
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(Reading database ... 23078 files and directories currently installed.)
  Preparing to unpack .../python-all_2.7.11-2_amd64.deb ...
  Unpacking python-all (2.7.11-2) ...
  Selecting previously unselected package libgfortran3:amd64.
  Preparing to unpack .../libgfortran3_6.1.1-7_amd64.deb ...
  Unpacking libgfortran3:amd64 (6.1.1-7) ...
  Selecting previously unselected package libblas-common.
  Preparing to unpack .../libblas-common_3.6.0-2_amd64.deb ...
  Unpacking libblas-common (3.6.0-2) ...
  Selecting previously unselected package libblas3.
  Preparing to unpack .../libblas3_3.6.0-2_amd64.deb ...
  Unpacking libblas3 (3.6.0-2) ...
  Selecting previously unselected package liblapack3.
  Preparing to unpack .../liblapack3_3.6.0-2_amd64.deb ...
  Unpacking liblapack3 (3.6.0-2) ...
  Selecting previously unselected package python-numpy.
  Preparing to unpack .../python-numpy_1%3a1.11.1~rc1-1_amd64.deb ...
  Unpacking python-numpy (1:1.11.1~rc1-1) ...
  Selecting previously unselected package libaec0:amd64.
  Preparing to unpack .../libaec0_0.3.2-1_amd64.deb ...
  Unpacking libaec0:amd64 (0.3.2-1) ...
  Selecting previously unselected package libsz2:amd64.
  Preparing to unpack .../libsz2_0.3.2-1_amd64.deb ...
  Unpacking libsz2:amd64 (0.3.2-1) ...
  Selecting previously unselected package libhdf5-10:amd64.
  Preparing to unpack .../libhdf5-10_1.8.16+docs-8_amd64.deb ...
  Unpacking libhdf5-10:amd64 (1.8.16+docs-8) ...
  Selecting previously unselected package python-h5py.
  Preparing to unpack .../python-h5py_2.6.0-1+b1_amd64.deb ...
  Unpacking python-h5py (2.6.0-1+b1) ...
  Selecting previously unselected package python-alabaster.
  Preparing to unpack .../python-alabaster_0.7.8-1_all.deb ...
  Unpacking python-alabaster (0.7.8-1) ...
  Selecting previously unselected package python-babel-localedata.
  Preparing to unpack .../python-babel-localedata_2.3.4+dfsg.1-2_all.deb ...
  Unpacking python-babel-localedata (2.3.4+dfsg.1-2) ...
  Selecting previously unselected package python-tz.
  Preparing to unpack .../python-tz_2015.7+dfsg-0.1_all.deb ...
  Unpacking python-tz (2015.7+dfsg-0.1) ...
  Selecting previously unselected package python-babel.
  Preparing to unpack .../python-babel_2.3.4+dfsg.1-2_all.deb ...
  Unpacking python-babel (2.3.4+dfsg.1-2) ...
  Selecting previously unselected package python-roman.
  Preparing to unpack .../python-roman_2.0.0-2_all.deb ...
  Unpacking python-roman (2.0.0-2) ...
  Selecting previously unselected package sgml-base.
  Preparing to unpack .../sgml-base_1.28_all.deb ...
  Unpacking sgml-base (1.28) ...
  Selecting previously unselected package xml-core.
  Preparing to unpack .../xml-core_0.13+nmu2_all.deb ...
  Unpacking xml-core (0.13+nmu2) ...
  Selecting previously unselected package docutils-common.
  Preparing to unpack .../docutils-common_0.12+dfsg-1_all.deb ...
  Unpacking docutils-common (0.12+dfsg-1) ...
  Selecting previously unselected package python-docutils.
  Preparing to unpack .../python-docutils_0.12+dfsg-1_all.deb ...
  Unpacking python-docutils (0.12+dfsg-1) ...
  Selecting previously unselected package python-imagesize.
  Preparing to unpack .../python-imagesize_0.7.1-1_all.deb ...
  Unpacking python-imagesize (0.7.1-1) ...
  Selecting previously unselected package python-markupsafe.
  Preparing to unpack .../python-markupsafe_0.23-2+b2_amd64.deb ...
  Unpacking python-markupsafe (0.23-2+b2) ...
  Selecting previously unselected package python-jinja2.
  Preparing to unpack .../python-jinja2_2.8-1_all.deb ...
  Unpacking python-jinja2 (2.8-1) ...
  Selecting previously unselected package python-pygments.
  Preparing to unpack .../python-pygments_2.1.3+dfsg-1_all.deb ...
  Unpacking python-pygments (2.1.3+dfsg-1) ...
  Selecting previously unselected package libjs-jquery.
  Preparing to unpack .../libjs-jquery_1.12.4-1_all.deb ...
  Unpacking libjs-jquery (1.12.4-1) ...
  Selecting previously unselected package libjs-underscore.
  Preparing to unpack .../libjs-underscore_1.7.0~dfsg-1_all.deb ...
  Unpacking libjs-underscore (1.7.0~dfsg-1) ...
  Selecting previously unselected package libjs-sphinxdoc.
  Preparing to unpack .../libjs-sphinxdoc_1.4.4-2_all.deb ...
  Unpacking libjs-sphinxdoc (1.4.4-2) ...
  Selecting previously unselected package sphinx-common.
  Preparing to unpack .../sphinx-common_1.4.4-2_all.deb ...
  Unpacking sphinx-common (1.4.4-2) ...
  Selecting previously unselected package python-sphinx.
  Preparing to unpack .../python-sphinx_1.4.4-2_all.deb ...
  Unpacking python-sphinx (1.4.4-2) ...
  Selecting previously unselected package python-numpydoc.
  Preparing to unpack .../python-numpydoc_0.5-2_all.deb ...
  Unpacking python-numpydoc (0.5-2) ...
  Selecting previously unselected package python-nose.
  Preparing to unpack .../python-nose_1.3.7-1_all.deb ...
  Unpacking python-nose (1.3.7-1) ...
  Selecting previously unselected package python-setuptools.
  Preparing to unpack .../python-setuptools_20.10.1-1.1_all.deb ...
  Unpacking python-setuptools (20.10.1-1.1) ...
  Selecting previously unselected package python-decorator.
  Preparing to unpack .../python-decorator_4.0.6-1_all.deb ...
  Unpacking python-decorator (4.0.6-1) ...
  Selecting previously unselected package python-scipy.
  Preparing to unpack .../python-scipy_0.17.1-1_amd64.deb ...
  Unpacking python-scipy (0.17.1-1) ...
  Selecting previously unselected package python3-all.
  Preparing to unpack .../python3-all_3.5.1-4_amd64.deb ...
  Unpacking python3-all (3.5.1-4) ...
  Selecting previously unselected package python3-numpy.
  Preparing to unpack .../python3-numpy_1%3a1.11.1~rc1-1_amd64.deb ...
  Unpacking python3-numpy (1:1.11.1~rc1-1) ...
  Selecting previously unselected package python3-six.
  Preparing to unpack .../python3-six_1.10.0-3_all.deb ...
  Unpacking python3-six (1.10.0-3) ...
  Selecting previously unselected package python3-h5py.
  Preparing to unpack .../python3-h5py_2.6.0-1+b1_amd64.deb ...
  Unpacking python3-h5py (2.6.0-1+b1) ...
  Selecting previously unselected package python3-pkg-resources.
  Preparing to unpack .../python3-pkg-resources_20.10.1-1.1_all.deb ...
  Unpacking python3-pkg-resources (20.10.1-1.1) ...
  Selecting previously unselected package python3-nose.
  Preparing to unpack .../python3-nose_1.3.7-1_all.deb ...
  Unpacking python3-nose (1.3.7-1) ...
  Selecting previously unselected package python3-setuptools.
  Preparing to unpack .../python3-setuptools_20.10.1-1.1_all.deb ...
  Unpacking python3-setuptools (20.10.1-1.1) ...
  Selecting previously unselected package python3-decorator.
  Preparing to unpack .../python3-decorator_4.0.6-1_all.deb ...
  Unpacking python3-decorator (4.0.6-1) ...
  Selecting previously unselected package python3-scipy.
  Preparing to unpack .../python3-scipy_0.17.1-1_amd64.deb ...
  Unpacking python3-scipy (0.17.1-1) ...
  Processing triggers for libc-bin (2.22-12) ...
  Processing triggers for man-db (2.7.5-1) ...
  Setting up python-all (2.7.11-2) ...
  Setting up libgfortran3:amd64 (6.1.1-7) ...
  Setting up libblas-common (3.6.0-2) ...
  Setting up libblas3 (3.6.0-2) ...
  update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
  Setting up liblapack3 (3.6.0-2) ...
  update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
  Setting up python-numpy (1:1.11.1~rc1-1) ...
  Setting up libaec0:amd64 (0.3.2-1) ...
  Setting up libsz2:amd64 (0.3.2-1) ...
  Setting up libhdf5-10:amd64 (1.8.16+docs-8) ...
  Setting up python-h5py (2.6.0-1+b1) ...
  Setting up python-alabaster (0.7.8-1) ...
  Setting up python-babel-localedata (2.3.4+dfsg.1-2) ...
  Setting up python-tz (2015.7+dfsg-0.1) ...
  Setting up python-babel (2.3.4+dfsg.1-2) ...
  update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode
  Setting up python-roman (2.0.0-2) ...
  Setting up sgml-base (1.28) ...
  Setting up xml-core (0.13+nmu2) ...
  Setting up python-imagesize (0.7.1-1) ...
  Setting up python-markupsafe (0.23-2+b2) ...
  Setting up python-jinja2 (2.8-1) ...
  Setting up python-pygments (2.1.3+dfsg-1) ...
  Setting up libjs-jquery (1.12.4-1) ...
  Setting up libjs-underscore (1.7.0~dfsg-1) ...
  Setting up libjs-sphinxdoc (1.4.4-2) ...
  Setting up sphinx-common (1.4.4-2) ...
  Setting up python-nose (1.3.7-1) ...
  Setting up python-setuptools (20.10.1-1.1) ...
  Setting up python-decorator (4.0.6-1) ...
  Setting up python-scipy (0.17.1-1) ...
  Setting up python3-all (3.5.1-4) ...
  Setting up python3-numpy (1:1.11.1~rc1-1) ...
  Setting up python3-six (1.10.0-3) ...
  Setting up python3-h5py (2.6.0-1+b1) ...
  Setting up python3-pkg-resources (20.10.1-1.1) ...
  Setting up python3-nose (1.3.7-1) ...
  Setting up python3-setuptools (20.10.1-1.1) ...
  Setting up python3-decorator (4.0.6-1) ...
  Setting up python3-scipy (0.17.1-1) ...
  Processing triggers for sgml-base (1.28) ...
  Setting up docutils-common (0.12+dfsg-1) ...
  Processing triggers for sgml-base (1.28) ...
  Setting up python-docutils (0.12+dfsg-1) ...
  update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
  update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
  Setting up python-sphinx (1.4.4-2) ...
  Setting up python-numpydoc (0.5-2) ...
  Setting up python-hdf5storage-build-deps (0.1.13-1) ...
  Processing triggers for libc-bin (2.22-12) ...

  **************************************************************************************
  ** Environment                                                                      **
  **************************************************************************************

  PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
  HOSTNAME=53e0310eb5a5
  TERM=xterm
  PAGER=more
  DISPLAY=:0
  DOCKER_IMAGE=lamby-debian-sid
  DEB_BUILD_OPTIONS=parallel=9
  PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
  HOME=/home/lamby
  LOGNAME=lamby
  SHLVL=1
  PWD=/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13
  OLDPWD=/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage
  GPG_TTY=/dev/console
  QUILT_PATCHES=debian/patches
  QUILT_NO_DIFF_INDEX=1
  QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
  DEBEMAIL=lamby at debian.org
  DEBFULLNAME=Chris Lamb
  EDITOR=vim
  LESS=-cgiFx4M
  BLASTER=A220 I5 D1 H5 P330 T6
  _=/usr/bin/env

  **************************************************************************************
  ** Building python-hdf5storage 0.1.13-1 on amd64                                    **
  **************************************************************************************

   dpkg-buildpackage -rfakeroot -D -us -uc -b
  dpkg-buildpackage: info: source package python-hdf5storage
  dpkg-buildpackage: info: source version 0.1.13-1
  dpkg-buildpackage: info: source distribution unstable
  dpkg-buildpackage: info: source changed by Ghislain Antony Vaillant <ghisvail at gmail.com>
   dpkg-source --before-build python-hdf5storage-0.1.13
  dpkg-buildpackage: info: host architecture amd64
   fakeroot debian/rules clean
  dh clean --with python2,python3,sphinxdoc --buildsystem=pybuild
     dh_testdir -O--buildsystem=pybuild
     dh_auto_clean -O--buildsystem=pybuild
  I: pybuild base:184: python2.7 setup.py clean 
  running clean
  removing '/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build' (and everything under it)
  'build/bdist.linux-x86_64' does not exist -- can't clean it
  'build/scripts-2.7' does not exist -- can't clean it
  I: pybuild base:184: python3.5 setup.py clean 
  running clean
  removing '/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build' (and everything under it)
  'build/bdist.linux-x86_64' does not exist -- can't clean it
  'build/scripts-3.5' does not exist -- can't clean it
     dh_clean -O--buildsystem=pybuild
   debian/rules build
  dh build --with python2,python3,sphinxdoc --buildsystem=pybuild
     dh_testdir -O--buildsystem=pybuild
     dh_update_autotools_config -O--buildsystem=pybuild
     dh_auto_configure -O--buildsystem=pybuild
  I: pybuild base:184: python2.7 setup.py config 
  running config
  I: pybuild base:184: python3.5 setup.py config 
  running config
     debian/rules override_dh_auto_build
  make[1]: Entering directory '/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13'
  dh_auto_build
  I: pybuild base:184: /usr/bin/python setup.py build 
  running build
  running build_py
  creating /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
  copying hdf5storage/__init__.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
  copying hdf5storage/lowlevel.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
  copying hdf5storage/utilities.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
  copying hdf5storage/Marshallers.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
  I: pybuild base:184: /usr/bin/python3 setup.py build 
  running build
  running build_py
  creating /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
  copying hdf5storage/__init__.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
  copying hdf5storage/lowlevel.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
  copying hdf5storage/utilities.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
  copying hdf5storage/Marshallers.py -> /home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
  PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc/source build/html
  Running Sphinx v1.4.4
  making output directory...
  WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead.

  Extension error:
  sphinx.ext.mathjax: other math package is already loaded
  debian/rules:14: recipe for target 'override_dh_auto_build' failed
  make[1]: *** [override_dh_auto_build] Error 1
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13'
  debian/rules:11: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.

Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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