Bug#876524: FTBFS with CGAL 4.11
Joachim Reichel
reichel at debian.org
Sat Sep 23 10:33:54 UTC 2017
Source: yade
Severity: serious
Tags: upstream
Hi,
I would like to upgrade CGAL from 4.9 to 4.11 but if I do so your package
FTBFS. Therefore (and because of the SONAME transition), CGAL 4.11 has been
uploaded to experimental for now instead of sid.
Attached is an excerpt from the build log with the errors.
Joachim
-- System Information:
Debian Release: 9.1
APT prefers stable
APT policy: (800, 'stable'), (700, 'testing'), (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'stable-debug'), (200, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.9.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
-------------- next part --------------
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:537:19: required from ?Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 3, 3> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, 3, 3> >, const Eigen::Inverse<Eigen::Matrix<double, 3, 3> > > >; Derived = Eigen::Matrix<double, 3, 3>]?
/usr/include/eigen3/Eigen/src/Core/Matrix.h:379:29: required from ?Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 3, 3> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, 3, 3> >, const Eigen::Inverse<Eigen::Matrix<double, 3, 3> > > >; _Scalar = double; int _Rows = 3; int _Cols = 3; int _Options = 0; int _MaxRows = 3; int _MaxCols = 3]?
/tmp/cgal/yade-2017.01a/core/Cell.hpp:138:102: required from here
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:86:63: warning: enum constant in boolean context [-Wint-in-bool-context]
MayLinearVectorize = bool(MightVectorize) && MayLinearize && DstHasDirectAccess
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:90:49: warning: enum constant in boolean context [-Wint-in-bool-context]
MaySliceVectorize = bool(MightVectorize) && bool(DstHasDirectAccess)
^~~~~~~~~~~~~~~~~~~~~~~~
CMakeFiles/yade.dir/build.make:977: recipe for target 'CMakeFiles/yade.dir/pkg/common/PersistentTriangulationCollider.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/common/PersistentTriangulationCollider.cpp.o] Error 1
--
/usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:537:19: required from ?Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 3, 3> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, 3, 3> >, const Eigen::Inverse<Eigen::Matrix<double, 3, 3> > > >; Derived = Eigen::Matrix<double, 3, 3>]?
/usr/include/eigen3/Eigen/src/Core/Matrix.h:379:29: required from ?Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 3, 3> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, 3, 3> >, const Eigen::Inverse<Eigen::Matrix<double, 3, 3> > > >; _Scalar = double; int _Rows = 3; int _Cols = 3; int _Options = 0; int _MaxRows = 3; int _MaxCols = 3]?
/tmp/cgal/yade-2017.01a/core/Cell.hpp:138:102: required from here
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:86:63: warning: enum constant in boolean context [-Wint-in-bool-context]
MayLinearVectorize = bool(MightVectorize) && MayLinearize && DstHasDirectAccess
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:90:49: warning: enum constant in boolean context [-Wint-in-bool-context]
MaySliceVectorize = bool(MightVectorize) && bool(DstHasDirectAccess)
^~~~~~~~~~~~~~~~~~~~~~~~
CMakeFiles/yade.dir/build.make:2033: recipe for target 'CMakeFiles/yade.dir/pkg/dem/MicroMacroAnalyser.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/dem/MicroMacroAnalyser.cpp.o] Error 1
--
^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/cgal/yade-2017.01a/lib/pyutil/numpy_boost.hpp:40,
from /tmp/cgal/yade-2017.01a/pkg/dem/TesselationWrapper.cpp:15:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1453:1: warning: ?int _import_array()? defined but not used [-Wunused-function]
_import_array(void)
^~~~~~~~~~~~~
CMakeFiles/yade.dir/build.make:2633: recipe for target 'CMakeFiles/yade.dir/pkg/dem/TesselationWrapper.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/dem/TesselationWrapper.cpp.o] Error 1
--
^~~~~~~
In file included from /tmp/cgal/yade-2017.01a/lib/triangulation/Network.hpp:104:0,
from /tmp/cgal/yade-2017.01a/lib/triangulation/FlowBoundingSphere.hpp:13,
from /tmp/cgal/yade-2017.01a/debian/build/pkg/pfv/FlowEngine_FlowEngineT.hpp:39,
from /tmp/cgal/yade-2017.01a/pkg/dem/TriaxialStressController.cpp:22:
/tmp/cgal/yade-2017.01a/lib/triangulation/Network.ipp:4:10: fatal error: CGAL/constructions/constructions_on_weighted_points_cartesian_3.h: No such file or directory
#include "CGAL/constructions/constructions_on_weighted_points_cartesian_3.h"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/yade.dir/build.make:2753: recipe for target 'CMakeFiles/yade.dir/pkg/dem/TriaxialStressController.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/dem/TriaxialStressController.cpp.o] Error 1
--
^~~~~~~
In file included from /tmp/cgal/yade-2017.01a/lib/triangulation/Network.hpp:104:0,
from /tmp/cgal/yade-2017.01a/lib/triangulation/FlowBoundingSphere.hpp:13,
from /tmp/cgal/yade-2017.01a/debian/build/pkg/pfv/FlowEngine_FlowEngineT.hpp:39,
from /tmp/cgal/yade-2017.01a/pkg/pfv/FlowEngine.cpp:11:
/tmp/cgal/yade-2017.01a/lib/triangulation/Network.ipp:4:10: fatal error: CGAL/constructions/constructions_on_weighted_points_cartesian_3.h: No such file or directory
#include "CGAL/constructions/constructions_on_weighted_points_cartesian_3.h"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/yade.dir/build.make:3401: recipe for target 'CMakeFiles/yade.dir/pkg/pfv/FlowEngine.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/pfv/FlowEngine.cpp.o] Error 1
--
^~~~~~~
In file included from /tmp/cgal/yade-2017.01a/lib/triangulation/Network.hpp:104:0,
from /tmp/cgal/yade-2017.01a/lib/triangulation/FlowBoundingSphere.hpp:13,
from /tmp/cgal/yade-2017.01a/debian/build/pkg/pfv/FlowEngine_FlowEngine_PeriodicInfo.hpp:39,
from /tmp/cgal/yade-2017.01a/pkg/pfv/PeriodicFlowEngine.cpp:16:
/tmp/cgal/yade-2017.01a/lib/triangulation/Network.ipp:4:10: fatal error: CGAL/constructions/constructions_on_weighted_points_cartesian_3.h: No such file or directory
#include "CGAL/constructions/constructions_on_weighted_points_cartesian_3.h"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/yade.dir/build.make:3425: recipe for target 'CMakeFiles/yade.dir/pkg/pfv/PeriodicFlowEngine.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/pkg/pfv/PeriodicFlowEngine.cpp.o] Error 1
--
isSphere
/tmp/cgal/yade-2017.01a/lib/triangulation/KinematicLocalisationAnalyser.cpp:735:65: error: ?class CGT::TriaxialState::Grain? has no member named ?sphere?; did you mean ?isSphere??
else v = v + (TS1->grain(id).sphere.point() - TS0->grain(id).sphere.point()-meanFieldDisp);
^~~~~~
isSphere
/tmp/cgal/yade-2017.01a/lib/triangulation/KinematicLocalisationAnalyser.cpp: In member function ?const std::vector<CGT::Tenseur3>& CGT::KinematicLocalisationAnalyser::computeParticlesDeformation()?:
/tmp/cgal/yade-2017.01a/lib/triangulation/KinematicLocalisationAnalyser.cpp:826:47: error: ?CGAL::Triangulation_vertex_base_3<CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Alpha_shape_vertex_base_3<CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_with_info_3<CGT::SimpleVertexInfo, CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Boolean_tag<false>, CGAL::Boolean_tag<false> >, CGAL::Alpha_shape_cell_base_3<CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_with_info_3<CGT::SimpleCellInfo, CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Boolean_tag<false>, CGAL::Boolean_tag<false> >, CGAL::Sequential_tag> > >::Point {aka class CGAL::Point_3<CGAL::Epick>}? has no member named ?weight?
v_solid_total += 4.188790*pow(V_it->point().weight(),1.5);//4.18... = 4/3*PI; and here, weight is rad?
^~~~~~
CMakeFiles/yade.dir/build.make:3689: recipe for target 'CMakeFiles/yade.dir/lib/triangulation/KinematicLocalisationAnalyser.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/lib/triangulation/KinematicLocalisationAnalyser.cpp.o] Error 1
--
/usr/include/CGAL/internal/deprecation_warning.h:83:293: note: #pragma message: Warning: The header `<CGAL/Regular_triangulation_euclidean_traits_3.h>` is deprecated.
Additional information: The kernel K can be used directly as traits since weighted points and the associated function objects are now part of the concept Kernel.
# pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
^
In file included from /tmp/cgal/yade-2017.01a/lib/triangulation/Tenseur3.h:5:0,
from /tmp/cgal/yade-2017.01a/lib/triangulation/Tenseur3.cpp:1:
/tmp/cgal/yade-2017.01a/lib/triangulation/RegularTriangulation.h:48:17: error: ?Weighted_point? in ?CGT::Traits {aka class CGAL::Regular_triangulation_euclidean_traits_3<CGAL::Epick>}? does not name a type
typedef Traits::Weighted_point Sphere;
^~~~~~~~~~~~~~
CMakeFiles/yade.dir/build.make:3713: recipe for target 'CMakeFiles/yade.dir/lib/triangulation/Tenseur3.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/lib/triangulation/Tenseur3.cpp.o] Error 1
--
/tmp/cgal/yade-2017.01a/lib/triangulation/TriaxialState.cpp: In member function ?bool CGT::TriaxialState::to_file(const char*, bool)?:
/tmp/cgal/yade-2017.01a/lib/triangulation/TriaxialState.cpp:308:54: error: ?__gnu_cxx::__alloc_traits<std::allocator<CGT::TriaxialState::Grain> >::value_type {aka class CGT::TriaxialState::Grain}? has no member named ?sphere?; did you mean ?isSphere??
Statefile << grains[Idg].id << " " << grains[Idg].sphere.point() << " " << grains[Idg].sphere.weight() << " " << grains[Idg].translation << " " << grains[Idg].rotation << " "<<grains[Idg].isSphere << endl;
^~~~~~
isSphere
/tmp/cgal/yade-2017.01a/lib/triangulation/TriaxialState.cpp:308:91: error: ?__gnu_cxx::__alloc_traits<std::allocator<CGT::TriaxialState::Grain> >::value_type {aka class CGT::TriaxialState::Grain}? has no member named ?sphere?; did you mean ?isSphere??
Statefile << grains[Idg].id << " " << grains[Idg].sphere.point() << " " << grains[Idg].sphere.weight() << " " << grains[Idg].translation << " " << grains[Idg].rotation << " "<<grains[Idg].isSphere << endl;
^~~~~~
isSphere
CMakeFiles/yade.dir/build.make:3761: recipe for target 'CMakeFiles/yade.dir/lib/triangulation/TriaxialState.cpp.o' failed
make[3]: *** [CMakeFiles/yade.dir/lib/triangulation/TriaxialState.cpp.o] Error 1
[ 82%] Building CXX object CMakeFiles/yade.dir/lib/triangulation/basicVTKwritter.cpp.o
/usr/bin/c++ -DNDEBUG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_ODEINT -DYADE_SPH -DYADE_VTK6 -Dyade_EXPORTS -I/tmp/cgal/yade-2017.01a/debian/build/yade_autogen/include -I/tmp/cgal/yade-2017.01a -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/x86_64-linux-gnu -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/suitesparse -I/tmp/cgal/yade-2017.01a/debian/build -I/tmp/cgal/yade-2017.01a/debian/build/pkg/pfv -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -g -O2 -fdebug-prefix-map=/tmp/cgal/yade-2017.01a=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O2 --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -std=c++11 -fext-numeric-literals -DYADE_VTK -DYADE_OPENMP -fopenmp -DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_CGAL -DFLOW_ENGINE -DLINSOLV -DFLOW_ENGINE -DYADE_GL2PS -DLBM_ENGINE -fPIC -ftrack-macro-expansion=0 -save-temps -fstack-protector-strong -DEIGEN_DONT_VECTORIZE -DEIGEN_DONT_ALIGN -DEIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT -DCGAL_DISABLE_ROUNDING_MATH_CHECK -frounding-math -fPIC -std=gnu++11 -o CMakeFiles/yade.dir/lib/triangulation/basicVTKwritter.cpp.o -c /tmp/cgal/yade-2017.01a/lib/triangulation/basicVTKwritter.cpp
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dh_auto_build: cd debian/build && make -j1 returned exit code 2
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make: *** [build] Error 2
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