Bug#933845: Bug#933844: libpmi-pmix-dev: MPI failure in dolfin tests

Drew Parsons dparsons at debian.org
Sun Aug 4 14:00:41 BST 2019


On 2019-08-04 19:19, Drew Parsons wrote:
> 
> Probably this is a clue: libdolfin.so should link to libpetsc.so.  But
> it is missing in the new libdolfin.so.  That means pmix is not the
> problem, so I'll close the bug against pmix once I can confirm.
> 

   CMake logs confirm the that petsc test fail linking with
   
/usr/lib/petscdir/petsc3.11/x86_64-linux-gnu-real/include/petscis.h:317:10: 
fatal error: H5Ipublic.h: No such file or directory
    #include <H5Ipublic.h>
           ^~~~~~~~~~~~~
   compilation terminated.


PETSC 3.11.3 inserted H5Ipublic.h into petscis.h, requiring hdf5 header 
paths be included for compilation.

Fixed upstream with commit 6a0bd7522af7eb76a79ca5f1af77fc9a30e8cdb2

Drew



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