Bug#933845: Bug#933844: libpmi-pmix-dev: MPI failure in dolfin tests
Drew Parsons
dparsons at debian.org
Sun Aug 4 14:00:41 BST 2019
On 2019-08-04 19:19, Drew Parsons wrote:
>
> Probably this is a clue: libdolfin.so should link to libpetsc.so. But
> it is missing in the new libdolfin.so. That means pmix is not the
> problem, so I'll close the bug against pmix once I can confirm.
>
CMake logs confirm the that petsc test fail linking with
/usr/lib/petscdir/petsc3.11/x86_64-linux-gnu-real/include/petscis.h:317:10:
fatal error: H5Ipublic.h: No such file or directory
#include <H5Ipublic.h>
^~~~~~~~~~~~~
compilation terminated.
PETSC 3.11.3 inserted H5Ipublic.h into petscis.h, requiring hdf5 header
paths be included for compilation.
Fixed upstream with commit 6a0bd7522af7eb76a79ca5f1af77fc9a30e8cdb2
Drew
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