Bug#925729: lammps: ftbfs with GCC-9
Matthias Klose
doko at debian.org
Wed Mar 27 19:45:58 GMT 2019
Package: src:lammps
Version: 0~20181211.gitad1b1897d+dfsg1-2
Severity: normal
Tags: sid bullseye
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-9
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc9-20190321/lammps_0~20181211.gitad1b1897d+dfsg1-2_unstable_gcc9.log
The last lines of the build log are at the end of this report.
To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-9/porting_to.html
GCC 9 also passes the linker option --as-needed by default; typical
build issues are passing libraries before object files to the linker,
or underlinking of convenience libraries built from the same source.
[...]
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
730 | if (me == 0) fread(&ngroup,sizeof(int),1,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:742:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
742 | if (me == 0) fread(&n,sizeof(int),1,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
746 | if (me == 0) fread(names[i],sizeof(char),n,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" 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[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_var.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_var.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_var.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_deprecated.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_deprecated.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_deprecated.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp"
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
320 | if (me == 0) fread(&nstyles,sizeof(int),1,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
329 | if (me == 0) fread(&n,sizeof(int),1,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
332 | if (me == 0) fread(keywords[m],sizeof(char),n,fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/integrate.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp"
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp: In member function 'void LAMMPS_NS::KSpace::qsum_qsq()':
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:280:3: error: 'nlocal' not specified in enclosing 'parallel'
280 | for (int i = 0; i < nlocal; i++) {
| ^~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:278:9: error: enclosing 'parallel'
278 | #pragma omp parallel for default(none) reduction(+:qsum_local,qsqsum_local)
| ^~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:281:19: error: 'q' not specified in enclosing 'parallel'
281 | qsum_local += q[i];
| ^
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:278:9: error: enclosing 'parallel'
278 | #pragma omp parallel for default(none) reduction(+:qsum_local,qsqsum_local)
| ^~~
make[3]: *** [CMakeFiles/lmp.dir/build.make:2757: CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
make[2]: *** [CMakeFiles/Makefile2:303: CMakeFiles/lmp.dir/all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
dh_auto_build: cd debian/build && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:10: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
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