Bug#976555: python-escript: FTBFS: ERROR: build stopped due to errors
Lucas Nussbaum
lucas at debian.org
Sat Dec 5 12:49:00 GMT 2020
Source: python-escript
Version: 5.5-5
Severity: serious
Justification: FTBFS on arm64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201205 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on arm64 (I don't know if it also fails on amd64).
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Build steps for py3
> mkdir -p /<<PKGBUILDDIR>>/debian/stage3
> scons -j4 cc_optim=' -O3 ' build_dir=/<<PKGBUILDDIR>>/debian/tmp3 verbose=on prefix=/<<PKGBUILDDIR>>/debian/stage3 options_file=debian/sid_options.py docs
> scons: Reading SConscript files ...
> 3.9.1rc1 (default, Nov 27 2020, 19:38:39)
> [GCC 10.2.0]
> Building with the following additional flags from debian: [['cpp_flags', '-Wdate-time -D_FORTIFY_SOURCE=2'], ['cxx_extra', '-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-uninitialized'], ['ld_extra', '-Wl,-z,relro -Wl,-z,now']]
> Using options in debian/sid_options.py.
> /bin/sh: 1: svnversion: not found
> Using svn revision information from file. Got revision = 6948
> Checking whether the C++ compiler works... yes
> Checking for C++ function gethostname()... yes
> Checking for C++ header file byteswap.h... yes
> Checking for C++ function SCbswap32()... yes
> Checking for C++ header file sys/endian.h... no
> Checking for C++ header file libkern/OSByteOrder.h... no
> Checking for working complex std::acos()... yes
> Checking for C++ header file Python.h... yes
> Checking for C++ function Py_Exit()... yes
> Checking for C++ library boost_python39... yes
> Checking for C++ header file numpy/ndarrayobject.h... yes
> Checking for C++ library netcdf_c++4... yes
> Checking for C++ library siloh5... yes
> Checking for C++ library boost_iostreams... no
> Matplotlib created a temporary config/cache directory at /tmp/matplotlib-db89g71a because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
> Traceback (most recent call last):
> File "<string>", line 1, in <module>
> ImportError: cannot import name 'griddata' from 'matplotlib.mlab' (/usr/lib/python3/dist-packages/matplotlib/mlab.py)
> Chmod("utest.sh", 0755)
> Generated utest.sh.
> Chmod("itest.sh", 0755)
> Generated itest.sh.
> Chmod("/<<PKGBUILDDIR>>/debian/stage3/bin/run-escript", 0755)
> Delete(["debian/stage3/lib/pythonMPI", "debian/stage3/lib/pythonMPIredirect"])
> Delete("debian/stage3/bin/escript-overlord")
> scons: done reading SConscript files.
> scons: Building targets ...
> cd debian/tmp3/posix/doc/user && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{user.tex} user.tex
> This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> cd debian/tmp3/posix/doc/install && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{install.tex} install.tex
> This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esy
> sdoc.cls
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styentering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.tex
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> esysdoc.cls
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))))
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty))))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def))
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r_defs.tex
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty)))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install_defs.tex
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> elist.tex
> (/usr/share/texlive/texmf-dist/tex/latex/ccaption/ccaption.sty) (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )))
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/eli
> st.tex (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )))
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.stycd debian/tmp3/posix/doc/cookbook && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{cookbook.tex} cookbook.tex
> )) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty
> Excluding comment 'comment')
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> verinfo.tex)))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/ver
> info.tex)
> Writing index file install.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
>
> Writing index file user.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> No file install.aux.
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> )
> No file user.aux.
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.styentering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /cookbook.tex) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /esysdoc.cls)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty)
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty)cd debian/tmp3/posix/doc/inversion && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{inversion.tex} inversion.tex
> )
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map}This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> }]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docguide.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cop
> yrights.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [2
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)]
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)) [3
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/doc
> guide.tex] [2]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> intro.tex [4]
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) [3
> Chapter 1.
>
> LaTeX Warning: Reference `chap:source' on page 5 undefined on input line 30.
>
>
> LaTeX Warning: Reference `app:cxxfeatures' on page 5 undefined on input line 31
> .
>
>
> LaTeX Warning: Reference `app:trilinos' on page 5 undefined on input line 33.
>
> )] [5 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)])
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg
>
> LaTeX Warning: Reference `app:py3' on page 4 undefined on input line 74.
>
>
> LaTeX Warning: Reference `app:changes' on page 4 undefined on input line 80.
>
>
> LaTeX Warning: Reference `app:ourrefs' on page 4 undefined on input line 85.
>
> [4)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> flatpak.tex]) [6]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cur
> rentdev.tex [5]) [6]
> Chapter 2.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03> [7]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.tex
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.tex [8]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/esysdoc.cls
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> Chapter 1.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fir
> ststep.tex)
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty)
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
>
> LaTeX Warning: Reference `fig:FirstSteps.1' on page 9 undefined on input line 3
> 3.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.1' on page 9 undefined on input line 58
> .
>
> [9) </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/
> figures//FirstStepDomain.pdf>]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def [7)]))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty
>
> LaTeX Warning: Reference `fig:FirstSteps.1' on page 10 undefined on input line
> 94.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.2' on page 10 undefined on input line 9
> 8.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.1.sum' on page 10 undefined on input li
> ne 117.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.2' on page 10 undefined on input line 1
> 18.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.2d' on page 10 undefined on input line
> 119.
>
>
> LaTeX Warning: Reference `fig:FirstSteps.2' on page 10 undefined on input line
> 145.
>
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 10 undefined on input line 148
> .
>
> [10
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> conda.tex)) [8]]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> Chapter 3.
> )
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) [9] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docker.tex
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> Chapter 4.
> )
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty) [11)]
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> source.tex [12]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty))
> Chapter 5.
>
> LaTeX Warning: Reference `sec:needpar' on page 13 undefined on input line 26.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
>
> LaTeX Warning: Reference `app:cxxfeatures' on page 13 undefined on input line 3
> 7.
>
> [13])
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)))
>
> LaTeX Warning: Reference `chap:finley' on page 11 undefined on input line 194.
>
>
> LaTeX Warning: Reference `chap:ripley' on page 11 undefined on input line 194.
>
>
> LaTeX Warning: Reference `chap:speckley' on page 11 undefined on input line 195
> .
>
> [11 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//FirstStepMesh.pdf>]
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty))
>
> LaTeX Warning: Reference `sec:build' on page 14 undefined on input line 73.
>
>
> LaTeX Warning: Reference `sec:othersrc' on page 14 undefined on input line 96.
>
>
> LaTeX Warning: Reference `sec:debsrc' on page 14 undefined on input line 98.
>
>
> LaTeX Warning: Reference `sec:ubsrc' on page 14 undefined on input line 99.
>
>
> LaTeX Warning: Reference `sec:susesrc' on page 14 undefined on input line 100.
>
>
> LaTeX Warning: Reference `sec:centossrc' on page 14 undefined on input line 101
> .
>
>
> LaTeX Warning: Reference `sec:fedorasrc' on page 14 undefined on input line 102
> .
>
>
> LaTeX Warning: Reference `sec:macportsrc' on page 14 undefined on input line 10
> 3.
>
>
> LaTeX Warning: Reference `sec:homebrewsrc' on page 14 undefined on input line 1
> 04.
>
>
> LaTeX Warning: Reference `sec:freebsdsrc' on page 14 undefined on input line 10
> 5.
>
>
> LaTeX Warning: Reference `sec:cleanup' on page 14 undefined on input line 108.
>
> [14]
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> Underfull \hbox (badness 10000) in paragraph at lines 152--153
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 195--196
>
> [15
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def])))
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
>
> LaTeX Warning: Reference `eq:FirstSteps.2' on page 12 undefined on input line 2
> 05.
>
>
> LaTeX Warning: Reference `eq:FirstSteps.2c' on page 12 undefined on input line
> 214.
>
>
> LaTeX Warning: Reference `ESCRIPT CHAP' on page 12 undefined on input line 223.
>
>
> [12]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty))
>
> LaTeX Warning: Reference `sec:cleanup' on page 16 undefined on input line 228.
>
>
> LaTeX Warning: Reference `sec:cleanup' on page 16 undefined on input line 256.
>
>
> Overfull \hbox (19.96072pt too wide) in paragraph at lines 266--267
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [16
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)]
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty))
>
> LaTeX Warning: Reference `sec:cleanup' on page 17 undefined on input line 307.
>
> Excluding 'comment' comment. [17]
>
> LaTeX Warning: Citation `matplotlib' on page 13 undefined on input line 312.
>
>
> LaTeX Warning: Citation `mayavi' on page 13 undefined on input line 317.
>
>
> LaTeX Warning: Citation `VisIt' on page 13 undefined on input line 317.
>
> [13
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd)))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def [18])
>
> LaTeX Warning: Reference `app:trilinos' on page 19 undefined on input line 481.
>
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty [19])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> cxx11.tex
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) [20]
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> Appendix A.
> ) [21]
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> trilinos.tex)) [22]
> Appendix B.
> [23
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty] [14 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /user/figures//FirstStepResultMATPLOTLIB.pdf>] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)) [24]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.aux
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> intro.aux))
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> flatpak.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> conda.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docker.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> source.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> cxx11.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> trilinos.aux))
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty
>
> Package rerunfilecheck Warning: File `install.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
> knappen/ec/tctt1000.600pk
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)>{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8
> r.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb)>
> </usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb)></usr/s
> hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)</usr/share/texlive/texmf-
> dist/fonts/type1/urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/t
> ype1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/hel
> vetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8
> a.pfb>
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb)>
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)</usr/sha
> re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb
>
> LaTeX Warning: Reference `fig:FirstSteps.3b' on page 15 undefined on input line
> 407.
>
>
> LaTeX Warning: Citation `matplotlib' on page 15 undefined on input line 408.
>
>
> LaTeX Warning: Citation `mayavi' on page 15 undefined on input line 426.
>
>
> LaTeX Warning: Citation `VisIt' on page 15 undefined on input line 426.
>
> [15> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//FirstStepResult.pdf></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmri8a.pfb]>
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty))
> Output written on install.pdf (24 pages, 150336 bytes).
> Transcript written on install.log.
>
>
> LaTeX Warning: Reference `fig:FirstSteps.3' on page 16 undefined on input line
> 470.
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dif
> fusion.texcd debian/tmp3/posix/doc/install && makeindex install.idx
>
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
>
> LaTeX Warning: Reference `DIFFUSION FIG 1' on page 16 undefined on input line 2
> 4.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP SEC' on page 16 undefined on input lin
> e 32.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM SEC' on page 16 undefined on input lin
> e 35.
>
>
> LaTeX Warning: Reference `DIFFUSION TRANS SEC' on page 16 undefined on input li
> ne 36.
>
>
> LaTeX Warning: Reference `FirstSteps' on page 16 undefined on input line 49.
>
> [16 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//DiffusionDomain.pdf>]
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.styThis is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
> Scanning input file install.idx...done (0 entries accepted, 0 rejected).
> Nothing written in install.ind.
> Transcript written in install.ilg.
>
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 1' on page 17 undefined on input li
> ne 72.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 2' on page 17 undefined on input li
> ne 79.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 1' on page 17 undefined on input li
> ne 92.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 4' on page 17 undefined on input li
> ne 98.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 2' on page 17 undefined on input li
> ne 104.
>
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 2222' on page 17 undefined on input
> line 121.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 1' on page 17 undefined on input li
> ne 126.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 2' on page 17 undefined on input li
> ne 127.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1' on page 17 undefined on input lin
> e 136.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1 TUTORIAL' on page 17 undefined on
> input line 145.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.3 TUTORIAL' on page 17 undefined on
> input line 153.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1 TUTORIAL' on page 17 undefined on
> input line 154.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.2 TUTORIAL' on page 17 undefined on
> input line 154.
>
>
> LaTeX Warning: Reference `FirstSteps' on page 17 undefined on input line 156.
>
> [17cd debian/tmp3/posix/doc/install && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{install.tex} install.tex
> ])
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)))This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
>
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 1' on page 18 undefined on input li
> ne 161.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 2' on page 18 undefined on input li
> ne 161.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 2' on page 18 undefined on input li
> ne 177.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.2 TUTORIAL' on page 18 undefined on
> input line 179.
>
> [18]
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /cookbook_defs.tex
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty)
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
>
> LaTeX Warning: Reference `FirstSteps' on page 19 undefined on input line 274.
>
>
> LaTeX Warning: Reference `DIFFUSION HELM EQ 1' on page 19 undefined on input li
> ne 306.
>
> [19
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty)]entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> esysdoc.cls))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
>
> LaTeX Warning: Reference `DIFFUSION TEMP EQ 1b' on page 20 undefined on input l
> ine 318.
>
> [20
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty]
> (/usr/share/texlive/texmf-dist/tex/latex/setspace/setspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty
>
> LaTeX Warning: Reference `DIFFUSION FIG 2' on page 21 undefined on input line 4
> 03.
>
> ))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wav
> e.tex)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty
> (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty
>
> LaTeX Warning: Reference `WAVE FIG 1.2' on page 21 undefined on input line 61.
>
> [21
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//DiffusionRes1.pdf> </<<PKGBUILDDIR>>/d
> ebian/tmp3/posix/doc/user/figures//DiffusionRes16.pdf> </build/python-escript-G
> iQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes32.pdf
> )> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//DiffusionRes48.pdf>])
>
> LaTeX Warning: Reference `WAVE natural' on page 22 undefined on input line 87.
>
>
> LaTeX Warning: Reference `WAVE source' on page 22 undefined on input line 96.
>
>
> LaTeX Warning: Reference `WAVE FIG 1.1' on page 22 undefined on input line 97.
>
>
> LaTeX Warning: Reference `SEC LinearPDE' on page 22 undefined on input line 105
> .
>
> [22
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//waveu.pdf, page is rotated 90 degrees>]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/elist.tex
> (/usr/share/texlive/texmf-dist/tex/latex/cite/chapterbib.sty))
> \gdef\@extra at binfo{@-1}\@writefile{toc}{\gdef \the at ipfilectr{@-1}}\@writefile{l
> of}{\gdef \the at ipfilectr{@-1}}\@writefile{lot}{\gdef \the at ipfilectr{@-1}}
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /elist.tex (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )
>
> LaTeX Warning: Reference `WAVE dyn 3aa' on page 23 undefined on input line 121.
>
>
> [23)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty) </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//wavea.pdf, page is rotated 90 degrees>] (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )) (/usr/share/texlive/texmf-dist/tex/latex/program/program.sty
> \gdef\@extra at binfo{}\@writefile{toc}{\gdef \the at ipfilectr{}}\@writefile{lof}{\g
> def \the at ipfilectr{}}\@writefile{lot}{\gdef \the at ipfilectr{}}
> )
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /verinfo.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/ueur.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> Writing index file cookbook.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty)
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/defs.tex)
>
> LaTeX Warning: Reference `LUMPING' on page 24 undefined on input line 214.
>
> [24
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/verinfo.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty]
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> Writing index file inversion.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> No file cookbook.aux.
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> )
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> No file inversion.aux.
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> )
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty)
>
> LaTeX Warning: Reference `SEC ESCRIPT DATA' on page 25 undefined on input line
> 228.
>
>
> LaTeX Warning: Reference `DIFFUSION CHAP' on page 25 undefined on input line 25
> 1.
>
> [25
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty])
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)))
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
>
> LaTeX Warning: Reference `WAVE dyn 66' on page 26 undefined on input line 323.
>
>
> LaTeX Warning: Reference `WAVE FIG 2' on page 26 undefined on input line 335.
>
>
> LaTeX Warning: Citation `GNUPLOT' on page 26 undefined on input line 346.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd
>
> LaTeX Warning: Citation `GNUPLOT' on page 26 undefined on input line 359.
>
> [26) </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//Wave11.pdf> </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//Wave22.pdf> </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/user/figures//Wave28.pdf
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)> </build/python-escrip
> t-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave32.pdf> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//Wave36.pdf>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd]))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map}]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)
>
> LaTeX Warning: Reference `WAVE FIG 1' on page 27 undefined on input line 365.
>
>
> LaTeX Warning: Reference `WAVE FIG 1.2' on page 27 undefined on input line 366.
>
>
>
> LaTeX Warning: Reference `EXECUTION' on page 27 undefined on input line 369.
>
>
> LaTeX Warning: Citation `SCIPY' on page 27 undefined on input line 396.
>
>
> LaTeX Warning: Citation `SCIPY' on page 27 undefined on input line 398.
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/hea
> tedblock.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /docguide.tex [2]
> Underfull \vbox (badness 1655) has occurred while \output is active [27
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty </build
> /python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//W
> avePC.pdf), page is rotated 90 degrees>]) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map [3}]] [4]
>
> LaTeX Warning: Reference `HEATEDBLOCK general problem' on page 28 undefined on
> input line 31.
>
>
> LaTeX Warning: Reference `WAVE general problem' on page 28 undefined on input l
> ine 31.
>
>
> LaTeX Warning: Reference `WAVE CHAP' on page 28 undefined on input line 32.
>
>
> LaTeX Warning: Reference `WAVE stress' on page 28 undefined on input line 34.
>
>
> LaTeX Warning: Reference `HEATEDBLOCK linear elastic' on page 28 undefined on i
> nput line 35.
>
>
> LaTeX Warning: Reference `HEATEDBLOCK linear elastic' on page 28 undefined on i
> nput line 58.
>
>
> LaTeX Warning: Reference `LINEARPDE.SYSTEM.1' on page 28 undefined on input lin
> e 67.
>
>
> LaTeX Warning: Reference `LINEARPDE.SYSTEM.1 TUTORIAL' on page 28 undefined on
> input line 77.
>
>
> LaTeX Warning: Reference `HEATEDBLOCK linear elastic' on page 28 undefined on i
> nput line 96.
>
>
> LaTeX Warning: Reference `LINEARPDE.SYSTEM.1 TUTORIAL' on page 28 undefined on
> input line 99.
>
> [28
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /currentdev.tex
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/docguide.tex [2 [5])]] [6]) [3
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty [7])] [8] [4])
> Chapter 1.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /intro.tex [5] [6]
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.tex)
>
> LaTeX Warning: Citation `ESCRIPT' on page 7 undefined on input line 26.
>
>
> LaTeX Warning: Citation `ESCRIPTCOOKBOOK' on page 7 undefined on input line 27.
>
>
>
> LaTeX Warning: Reference `part1' on page 7 undefined on input line 30.
>
>
> LaTeX Warning: Reference `part2' on page 7 undefined on input line 38.
>
> )
>
> LaTeX Warning: Reference `CHAP HEAT DIFF' on page 9 undefined on input line 77.
>
>
>
> LaTeX Warning: Reference `CHAP HEAT 2a' on page 9 undefined on input line 78.
>
>
> LaTeX Warning: Reference `CHAP HEAT 2' on page 9 undefined on input line 78.
>
> [9 [7]] [8]
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /quickstart.tex [9]) [10]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /escpybas.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.tex
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [29)]
>
> LaTeX Warning: Reference `HEATEDBLOCK FIG 2' on page 30 undefined on input line
> 179.
>
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kesflow.tex
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty
> ! Too many }'s.
> l.38 ...otnote{See \url{http://www.geuz.org/gmsh/}
> } (which is required by \m...
>
> ! Too many }'s.
> l.38 ...tnote{See \url{http://www.geuz.org/gmsh/}}
> (which is required by \mo...
>
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.38 ...h ) are included with the support bundles.
>
> ))) [10
>
> LaTeX Warning: Reference `GENERAL NAVIER STOKES COM' on page 30 undefined on in
> put line 72.
>
>
> LaTeX Warning: Reference `MODELS CHAPTER' on page 30 undefined on input line 77
> .
>
> [30] </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//HeatedBlock.pdf>]
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty
> Chapter 2.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example01.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> Chapter 1.
>
> LaTeX Warning: Reference `part2' on page 11 undefined on input line 12.
>
>
> LaTeX Warning: Reference `Chp:cook:magnetic inversion' on page 11 undefined on
> input line 32.
>
>
> LaTeX Warning: Reference `Chp:cook:joint inversion' on page 11 undefined on inp
> ut line 32.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 54--54
> []\OT1/ptm/m/n/10 Figure 1.1: Grav-ity Anomaly Data in $\OML/cmm/m/it/10 mgal$
> \OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
>
> Underfull \hbox (badness 10000) in paragraph at lines 65--65
> []\OT1/ptm/m/n/10 Figure 1.2: 3-D con-tour plot of the den-sity dis-tri-bu-tion
> ob-tained by in-ver-sion of file
>
> LaTeX Warning: Citation `ESCRIPTCOOKBOOK' on page 11 undefined on input line 76
> .
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 11 undefined on input line 77.
>
>
> LaTeX Warning: Reference `code: gravity1' on page 11 undefined on input line 82
> .
>
> [11]
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty
>
> LaTeX Warning: Reference `fig:onedgbmodel' on page 11 undefined on input line 2
> 0.
>
>
> Underfull \vbox (badness 2698) has occurred while \output is active [11pdfTeX w
> arning (ext4): destination with the same identifier (name{figure.2.1}) has been
> already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.47 \end{equation}
> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/cookbook/figures/onedheatdiff001.pdf (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty>])
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
>
> LaTeX Warning: Citation `LBB' on page 31 undefined on input line 106.
>
> [31]
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 55.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 59.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 66.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 70.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 76.
>
>
> LaTeX Warning: Reference `eqn:Tbeuler' on page 12 undefined on input line 102.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 12 undefined on input line 102.
>
>
> LaTeX Warning: Reference `eqn:beuler' on page 12 undefined on input line 125.
>
>
> LaTeX Warning: Reference `eqn:hddisc' on page 12 undefined on input line 132.
>
> [12)]
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty))
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 13 undefined on input l
> ine 153.
>
>
> LaTeX Warning: Reference `eqn:hddisc' on page 13 undefined on input line 158.
>
>
> LaTeX Warning: Reference `eqn:hddisc' on page 13 undefined on input line 159.
>
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 13 undefined on input l
> ine 165.
>
>
> LaTeX Warning: Reference `eqn:hdgenf' on page 13 undefined on input line 171.
>
>
> LaTeX Warning: Reference `eqn:commonform' on page 13 undefined on input line 17
> 1.
>
>
> Underfull \hbox (badness 4353) in paragraph at lines 185--185
> [][]\OT1/ptm/m/n/8 More in-for-ma-tion on Bound-ary Con-di-tions is avail-able
> at Wikipedia [][]$\OT1/pcr/m/n/8 http : / / en . wikipedia . org / wiki / Bound
> ary _
>
> LaTeX Warning: Reference `Sec:1DHDv0' on page 13 undefined on input line 191.
>
>
> LaTeX Warning: Reference `NEUMAN 1' on page 13 undefined on input line 217.
>
>
> LaTeX Warning: Reference `eqn:hdgenf' on page 13 undefined on input line 220.
>
>
> LaTeX Warning: Reference `eqn:hdgenf' on page 13 undefined on input line 221.
>
> [13]
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) [12
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 14 undefined on input l
> ine 235.
>
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 14 undefined on input l
> ine 245.
>
>
> LaTeX Warning: Reference `ESCRIPT SET' on page 14 undefined on input line 247.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 14 undefined on input line 258.
>
>
> LaTeX Warning: Reference `sec:escpybas' on page 14 undefined on input line 261.
>
>
>
> LaTeX Warning: Reference `sec:key' on page 14 undefined on input line 261.
>
>
> LaTeX Warning: Reference `fig:wf' on page 14 undefined on input line 268.
>
> [14 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figu
> res//QLDWestGravityDataPlot.pngpdfTeX warning (ext4): destination with the same identifier (name{figure.2.2
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.313 T
> here are various ways to construct domain objects. The simplest form ...
> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookboo
> k/figures/workflow.png
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
>
> LaTeX Warning: Reference `FLUID OUTPUT' on page 32 undefined on input line 218.
>
>
> )
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sli
> p.tex>] [15pdfTeX warning (ext4): destination with the same id
> entifier (name{figure.2.3}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.313 T
> here are various ways to construct domain objects. The simplest form ...
> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookboo
> k/figures/functionspace.pdf>])
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
>
> LaTeX Warning: Reference `fig:slip.1' on page 32 undefined on input line 28.
>
> [32]
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.315 ...ed \verb rectangle(). Besides the spatial
>
>
> LaTeX Warning: Reference `fig:fs' on page 16 undefined on input line 317.
>
>
> Overfull \hbox (32.80313pt too wide) in paragraph at lines 313--330
> \OT1/ptm/m/n/10 length and height. There is a ready to use func-tion for this n
> amed [][]\OT1/pcr/m/n/10 ectangle(). Besides the spatial[]\OT1/ptm/m/n/10 dimen
> sions
>
> LaTeX Warning: Reference `fig:fs' on page 16 undefined on input line 333.
>
>
> LaTeX Warning: Reference `fig:fs' on page 16 undefined on input line 354.
>
>
> LaTeX Warning: Reference `STEADY-STATE HEAT REFRACTION' on page 16 undefined on
> input line 383.
>
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 16 undefined on input l
> ine 389.
>
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 16 undefined on input l
> ine 391.
>
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 16 undefined on input l
> ine 394.
>
>
> LaTeX Warning: Reference `eqn:commonform2D' on page 16 undefined on input line
> 406.
>
>
> LaTeX Warning: Reference `eqn:commonform' on page 16 undefined on input line 40
> 7.
>
> [16]
>
> LaTeX Warning: Reference `ELASTIC CHAP' on page 33 undefined on input line 50.
>
>
> LaTeX Warning: Reference `Slip stress' on page 33 undefined on input line 63.
>
> [33 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//stokes-fluid-t01.pdf> </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t10.pdf> </build/python-escr
> ipt-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-
> t20.pdf
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /user/figures//stokes-fluid-t30.pdf
>
> LaTeX Warning: Reference `eqn:hdgenf' on page 17 undefined on input line 420.
>
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty> </<<BUILDDIR>>/python-escri
> pt-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t40.pdf> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-f
> luid-t50.pdf>]
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty)
>
> LaTeX Warning: Reference `Slip stress split' on page 34 undefined on input line
> 85.
>
>
> LaTeX Warning: Reference `Slip general problem' on page 34 undefined on input l
> ine 85.
>
>
> LaTeX Warning: Reference `Slip stress split 1' on page 34 undefined on input li
> ne 90.
>
>
> LaTeX Warning: Reference `Slip constraint' on page 34 undefined on input line 9
> 2.
>
>
> LaTeX Warning: Reference `Slip natural fault' on page 34 undefined on input lin
> e 92.
>
>
> LaTeX Warning: Reference `ELASTIC CHAP' on page 34 undefined on input line 94.
>
>
> LaTeX Warning: Reference `Fault System' on page 34 undefined on input line 97.
>
> [34
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//Slip1.pdf)>]))
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty)
> Underfull \hbox (badness 10000) in paragraph at lines 415--425
>
> [17)]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install_defs.tex [35] (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> elist.tex
>
> LaTeX Warning: Reference `fig:slip.2' on page 36 undefined on input line 190.
>
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dir
> ac.tex (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> ))) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
>
> LaTeX Warning: Reference `EX:DIRAC1' on page 36 undefined on input line 47.
>
> [36 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//Slip2.png
> (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty
> Excluding comment 'comment')
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> verinfo.tex)>] [13 </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravContourMu10.png (PNG co
> py)>]
>
> LaTeX Warning: Reference `ss:domcon' on page 18 undefined on input line 508.
>
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.569 ... temperature \verb T across the bar this
>
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.570 ...ut at each time step is \verb T the heat
>
>
> Overfull \hbox (58.5923pt too wide) in paragraph at lines 567--572
> \OT1/ptm/m/n/10 As the right hand side of the gen-eral form is de-pen-dent on t
> he pre-vi-ous val-ues for tem-per-a-ture [] []\OT1/pcr/m/n/10 across the bar t
> his[]\OT1/ptm/m/n/10 must
> [18]
> Writing index file install.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.aux
>
> LaTeX Warning: Citation `ESCRIPT' on page 14 undefined on input line 138.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:1' on page 14 undefined on input line 152
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 14 undefined on input line 154
> .
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:DATA' on page 14 undefined on input line
> 155.
>
>
> LaTeX Warning: Reference `code: gravity1' on page 14 undefined on input line 18
> 5.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:2' on page 14 undefined on input line 188
> .
>
>
> LaTeX Warning: Reference `fig:domainBuilder' on page 14 undefined on input line
> 189.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:3' on page 14 undefined on input line 217
> .
>
>
> LaTeX Warning: Reference `sec:forward gravity' on page 14 undefined on input li
> ne 226.
>
> [14]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> intro.aux) [15 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//dom2D.pdf> </<<PKGBUILDDIR>>
> /debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf
>
> pdfTeX warning: pdflatex (file /<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf):
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> flatpak.auxPDF inclusion: multiple
> pdfs with page group included in a single page
> >])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> conda.aux)
> Underfull \hbox (badness 10000) in paragraph at lines 604--605
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 604--605
>
>
> LaTeX Warning: Reference `Sec:2DHD' on page 19 undefined on input line 617.
>
> [19
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docker.aux
>
> LaTeX Warning: Label `chap:flatpak' multiply defined.
>
> )]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> source.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> cxx11.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> trilinos.aux))
>
> LaTeX Warning: Reference `code: gravity1' on page 16 undefined on input line 23
> 5.
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 16 undefined on input line 278.
>
>
> LaTeX Warning: Citation `ESCRIPTONLINE' on page 16 undefined on input line 278.
>
>
>
> LaTeX Warning: Citation `Telford1990a' on page 16 undefined on input line 282.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
>
> LaTeX Warning: Citation `Telford1990a' on page 16 undefined on input line 290.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:2' on page 16 undefined on input line 294
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 16 undefined on input line 299
> .
>
> [16]
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:DATAHOLES' on page 17 undefined on
> input line 324.
>
>
> LaTeX Warning: Citation `ERMAPPER' on page 17 undefined on input line 327.
>
>
> LaTeX Warning: Citation `NETCDF' on page 17 undefined on input line 327.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:ERMAPPER' on page 17 undefined on
> input line 329.
>
>
> LaTeX Warning: Reference `sec:ref:DataSource:ERM' on page 17 undefined on input
> line 330.
>
>
> LaTeX Warning: Reference `Chp:ref:data sources' on page 17 undefined on input l
> ine 333.
>
>
> LaTeX Warning: Citation `NETCDF' on page 17 undefined on input line 336.
>
>
> LaTeX Warning: Reference `code: gravity1' on page 17 undefined on input line 33
> 9.
>
>
> LaTeX Warning: Reference `sec:ref:DataSource' on page 17 undefined on input lin
> e 359.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:MULTIDATA' on page 17 undefined on
> input line 416.
>
> [17]
>
> LaTeX Warning: Reference `code: gravity1' on page 18 undefined on input line 42
> 3.
>
>
> LaTeX Warning: Reference `part2' on page 18 undefined on input line 433.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:REG' on page 18 undefined on input
> line 470.
>
> [18
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii]
> [Loading MPS to PDF converter (version 2006.09.02).]
> )
>
> LaTeX Warning: Reference `fig:onedheatout1' on page 20 undefined on input line
> 671.
>
> [20pdfTeX warning (ext4): destination with the same identifier (name{figure.2.4
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.680 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ttblockspyplot150.png (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)>]
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map
>
> LaTeX Warning: Reference `code: gravity1' on page 19 undefined on input line 50
> 1.
>
>
> LaTeX Warning: Citation `VISIT' on page 19 undefined on input line 504.
>
>
> LaTeX Warning: Citation `mayavi' on page 19 undefined on input line 504.
>
>
> LaTeX Warning: Citation `SILO' on page 19 undefined on input line 516.
>
>
> LaTeX Warning: Citation `VISIT' on page 19 undefined on input line 517.
>
>
> LaTeX Warning: Citation `GOCAD' on page 19 undefined on input line 529.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 19 undefined on input line 564
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 19 undefined on input line 564
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 19 undefined on input line 594
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 19 undefined on input line 594
> .
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:10' on page 19 undefined on input line 59
> 9.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:11' on page 19 undefined on input line 59
> 9.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:0' on page 19 undefined on input line 601
> .
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 19 undefined on input line 631.
>
> [19}]] [20 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//QLDGravContourMu01.png
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docguide.tex (PNG copy)> </build/python-escript-G
> iQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravContou
> rMu1.png (PNG copy)> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/inversion/figures//QLDGravContourMu100.png (PNG copy)> </build/pyt
> hon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//
> QLDGravContourMu1000.png (PNG copy)>] [21 </<<BUILDDIR>>/python-
> escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthMu01.png (PNG
> copy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/i
> nversion/figures//QLDGravDepthMu1.png (PNG copy)> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthMu10.p
> ng (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/inversion/figures//QLDGravDepthMu100.png (PNG copy)> </build/python-escr
> ipt-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravD
> epthMu1000.png (PNG copy)>)] [2]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.toc) [3]
>
> LaTeX Warning: Reference `SEC:P1:GRAV:DATA' on page 22 undefined on input line
> 647.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:DATA' on page 22 undefined on input line
> 664.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:DATAHOLES' on page 22 undefined on
> input line 665.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:onshoreoffshore' on page 22 undefined on
> input line 674.
>
>
> LaTeX Warning: Reference `FIG:P1:GRAV:onshoreoffshore' on page 22 undefined on
> input line 680.
>
> [22
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> intro.tex </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inve
> rsion/figures//onshore-offshore.png [4]
> Chapter 1.
> ) [5]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> flatpak.tex [6]
> Chapter 2.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty
> Underfull \hbox (badness 10000) in paragraph at lines 684--692
>
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.723 ...small numbers should have leading zeroes;
>
>
> LaTeX Warning: Float too large for page by 10.55325pt on input line 775.
>
> [21] [22pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.2.5}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.776 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/blockspyplot001.png)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty)) [7]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> conda.tex [8]
> Chapter 3.
> ) [9]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docker.tex [10]
> Chapter 4.
> ) [11]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> source.tex [12]
> Chapter 5.
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)> </<<BUILDDIR>>/py
> thon-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/blockspyplot050.png [13]>] [14
>
> LaTeX Warning: Reference `part2' on page 23 undefined on input line 751.
>
> )] [23]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.tex [24]
> Underfull \hbox (badness 10000) in paragraph at lines 152--153
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 195--196
>
> [15]
> Chapter 2.
>
> Underfull \hbox (badness 10000) in paragraph at lines 7--7
> []\OT1/ptm/m/n/10 Figure 2.1: Mag-netic anomaly data in $\OML/cmm/m/it/10 nT$ \
> OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 25 undefined on input line 15.
>
>
> LaTeX Warning: Reference `code: magnetic1' on page 25 undefined on input line 1
> 9.
>
>
> LaTeX Warning: Reference `code: gravity1' on page 25 undefined on input line 20
> .
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:1' on page 25 undefined on input line 76.
>
> [25] [26 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//QLDWestMagneticDataPlot.png> </
> <<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook/f
> igures/blockspyplot200.png
> Overfull \hbox (19.96072pt too wide) in paragraph at lines 266--267
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [16] Excluding 'comment' comment. [17]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [18]) [19]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> cxx11.tex [20]
> Appendix A.
> ) [21]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> trilinos.tex [22]>]
> Appendix B.
> [23] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)) [24]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> install.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> intro.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> flatpak.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> conda.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> docker.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> source.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> cxx11.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/install/
> trilinos.aux))
>
> Package rerunfilecheck Warning: File `install.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were multiply-defined labels.
>
> )
> (see the transcript file for additional information) </tmp/texfonts/pk/ljfour/j
> knappen/ec/tctt1000.600pk>{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8
> r.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>
> </usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/s
> hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-
> dist/fonts/type1/urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/t
> ype1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/hel
> vetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8
> a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb
> Overfull \hbox (3.76056pt too wide) in paragraph at lines 797--798
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [][][][][][][][][][][][][][][][][][][][][][][][][]
>
> LaTeX Warning: Reference `fig:onedheatout' on page 23 undefined on input line 8
> 12.
>
> )></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmri8a.pfb>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example02.tex
> Output written on install.pdf (24 pages, 153039 bytes).
> Transcript written on install.log.
> > </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagContourMu01.p
> ng (PNG copy)>]Install file: "debian/tmp3/posix/doc/install/install.pdf" as "debian/stage3/release/doc/install/install.r-2.pdf"
>
> Underfull \hbox (badness 10000) in paragraph at lines 17--19
>
>
> LaTeX Warning: Reference `fig:onedhdmodel' on page 23 undefined on input line 2
> 1.
>
>
> LaTeX Warning: Reference `Sec:1DHDv00' on page 23 undefined on input line 34.
>
> [23cd /<<PKGBUILDDIR>>/doc && tar -cf /<<PKGBUILDDIR>>/debian/stage3/release/doc/escript_examples.tar examples/usersguide/lid_driven_cavity.py examples/usersguide/mount.py examples/usersguide/heatedblock.py examples/usersguide/helmholtz.py examples/usersguide/fluid.py examples/usersguide/poisson.py examples/usersguide/diffusion.py examples/usersguide/poisson_vtk.py examples/usersguide/darcy.py examples/usersguide/dirac.py examples/usersguide/slip.py examples/usersguide/int_save.py examples/usersguide/wave.py examples/usersguide/voxet_reader.py examples/geotutorial/steadystate_variablek.py examples/geotutorial/steadystate.py examples/geotutorial/forward_euler.py examples/geotutorial/myfirstscript.py examples/geotutorial/backward_euler.py examples/cookbook/example01a.py examples/cookbook/example01b.py examples/cookbook/example03b.py examples/inversion/create_netcdf.py examples/inversion/grav_ermapper.py examples/inversion/grav_netcdf.py examples/inversion/gravmag_netcdf.py examples/inversion/gravmag_nodriver.py examples/inversion/mag_netcdf.py examples/inversion/test_commemi1.py examples/inversion/test_commemi4.py examples/usersguide/trapezoid.py examples/usersguide/quad.py examples/usersguide/brick.py examples/usersguide/refine.py examples/usersguide/poisson_matplotlib.py examples/cookbook/example01c.py examples/cookbook/example02.py examples/cookbook/example03a.py examples/cookbook/example04a.py examples/cookbook/example04b.py examples/cookbook/example05a.py examples/cookbook/example05b.py examples/cookbook/example05c.py examples/cookbook/example06.py examples/cookbook/example07a.py examples/cookbook/example07b.py examples/cookbook/example08a.py examples/cookbook/example08b.py examples/cookbook/example08c.py examples/cookbook/example09m.py examples/cookbook/example09a.py examples/cookbook/example10a.py examples/cookbook/example10b.py examples/cookbook/example10m.py examples/cookbook/example11a.py examples/cookbook/example11b.py examples/inversion/plot_ermapper.py examples/inversion/plot_netcdf.py examples/inversion/dc_forward.py examples/cookbook/cblib.py examples/inversion/content.txt examples/inversion/data/GravitySmall examples/inversion/data/MagneticSmall examples/inversion/data/QLDWestGravity examples/inversion/data/QLDWestMagnetic examples/inversion/data/GravitySmall.ers examples/inversion/data/MagneticSmall.ers examples/inversion/data/QLDWestGravity.ers examples/inversion/data/QLDWestMagnetic.ers examples/inversion/data/GravitySmall.nc examples/inversion/data/MagneticSmall.nc examples/inversion/data/QLDWestGravity.nc examples/inversion/data/QLDWestMagnetic.nc examples/inversion/data/HalfSphere_v1.4.msh
> ]gzip -n -9 /<<PKGBUILDDIR>>/debian/stage3/release/doc/escript_examples.tar
>
>
> LaTeX Warning: Reference `eqn:hddisc' on page 24 undefined on input line 71.
>
>
> LaTeX Warning: Reference `SEC BOUNDARY COND' on page 24 undefined on input line
> 73.
>
> [24pdfTeX warning (ext4): destination with the same identifier (name{figure.2.6
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.110 I
> t is important to remark here that if a Dirichlet boundary condition is
> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /figures/onedheatdiff002.pdf>]
>
> LaTeX Warning: Citation `IGRF' on page 27 undefined on input line 96.
>
>
> LaTeX Warning: Citation `AGRF' on page 27 undefined on input line 97.
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 27 undefined on input line 163.
>
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 27 undefined on input line 163.
>
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 27 undefined on input line 192.
>
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 27 undefined on input line 192.
>
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:10' on page 27 undefined on input line 196
> .
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:11' on page 27 undefined on input line 196
> .
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:0' on page 27 undefined on input line 197.
>
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:10' on page 27 undefined on input line 198
> .
>
>
> LaTeX Warning: Reference `FIG:P1:MAG:11' on page 27 undefined on input line 199
> .
>
> ) [27] [28 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/inversion/figures//QLDMagContourMu0001.png (PNG copy)> </build/python-escrip
> t-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagCont
> ourMu001.png (PNG copy)> </<<PKGBUILDDIR>>/debia
> n/tmp3/posix/doc/inversion/figures//QLDMagContourMu1.png (PNG copy)> </build/py
> thon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures/
> /QLDMagContourMu10.png (PNG copy)>]> [29] </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu0001.png (PNG c
> opy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/in
> version/figures//QLDMagDepthMu001.png (PNG copy)> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu01.pn
> g (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/posi
> x/doc/inversion/figures//QLDMagDepthMu1.png (PNG copy)> </build/python-escript-
> GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthM
> u10.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.tex [30]
> Chapter 3.
> ) [31]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.tex [32]
>
> LaTeX Warning: Reference `fig:onedheatout1 002' on page 25 undefined on input l
> ine 116.
>
>
> LaTeX Warning: Reference `fig:onedheatout 002' on page 25 undefined on input li
> ne 119.
>
>
> LaTeX Warning: Float too large for page by 10.55325pt on input line 146.
>
> ) [25pdfTeX warning (ext4): destination with the same identifier (name{figure.2
> .7}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.108 \chapter
> {Heat Diffusion in Two Dimensions} </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ttrodpyplot150.png
>
> LaTeX Warning: Reference `FIG:EX:DIRAC' on page 37 undefined on input line 75.
>
> )) [37 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/u
> ser/figures//diracplot.png
> Chapter 4.
>
> LaTeX Warning: Citation `LOKE2014' on page 33 undefined on input line 30.
>
>
> LaTeX Warning: Reference `sec:forward DCRES' on page 33 undefined on input line
> 35.
>
>
> LaTeX Warning: Reference `fig:HalfSphere' on page 33 undefined on input line 39
> .
>
> [33] [34 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//HalfSphere.png>]
> [26pdfTeX warning (ext4): destination with the same identifier (name{figure.2.8
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.108 \chapter
> {Heat Diffusion in Two Dimensions} </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/rodpyplot001.png> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/fi
> gures/rodpyplot050.png>]) [35] [36] [37] [38]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.tex
> Chapter 5.
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 39 undefined on input
> line 7.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping' on page 39 undefined on input line 1
> 0.
>
>
> LaTeX Warning: Reference `Chp:ref:forward models' on page 39 undefined on input
> line 13.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping' on page 39 undefined on input line 4
> 6.
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 39 undefined on input line 54.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 39 undefined on input
> line 55.
>
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 39 undefined on input li
> ne 58.
>
>
> LaTeX Warning: Reference `part1' on page 39 undefined on input line 71.
>
>
> LaTeX Warning: Reference `chapter:ref:Drivers:Drivers' on page 39 undefined on
> input line 72.
>
> [39]
>
> LaTeX Warning: Reference `fig:classes' on page 40 undefined on input line 75.
>
>
> LaTeX Warning: Reference `Chp:ref:data sources' on page 40 undefined on input l
> ine 76.
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 40 undefined on input line 79.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 40 undefined on input
> line 79.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 40 undefined on input
> line 84.
>
>
> LaTeX Warning: Reference `Chp:ref:forward models' on page 40 undefined on input
> line 85.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping' on page 40 undefined on input line 8
> 6.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 40 undefined on inp
> ut line 88.
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Drivers.tex [40 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/inversion/figures//classdep.pdf>]> </<<PKGBUILDDIR>>/debian
> /tmp3/posix/doc/cookbook/figures/rodpyplot200.png>]
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function' on page 41 undef
> ined on input line 14.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 41 undefined on inp
> ut line 19.
>
>
> LaTeX Warning: Reference `EQU:MIN:3a' on page 41 undefined on input line 35.
>
>
> LaTeX Warning: Reference `EQU:MIN:3b' on page 41 undefined on input line 37.
>
>
> LaTeX Warning: Reference `Chp:cook:gravity inversion' on page 41 undefined on i
> nput line 58.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 41 undefined on input
> line 66.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping density' on page 41 undefined on inpu
> t line 67.
>
>
> LaTeX Warning: Reference `sec:forward gravity' on page 41 undefined on input li
> ne 68.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 41 undefined on inp
> ut line 70.
>
>
> LaTeX Warning: Citation `Nocedal1980' on page 41 undefined on input line 71.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 41 undefined on input
> line 91.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping density' on page 41 undefined on inpu
> t line 97.
>
>
> LaTeX Warning: Reference `EQU:REG:1' on page 41 undefined on input line 100.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 41 undefined on input
> line 103.
>
> [41
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.tex] [38]
>
> LaTeX Warning: Reference `Chp:cook:magnetic inversion' on page 42 undefined on
> input line 111.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 42 undefined on input
> line 117.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping susceptibility' on page 42 undefined
> on input line 118.
>
>
> LaTeX Warning: Reference `sec:forward self demagnetic' on page 42 undefined on
> input line 120.
>
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 42 undefined on input l
> ine 121.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 42 undefined on inp
> ut line 123.
>
>
> LaTeX Warning: Citation `Nocedal1980' on page 42 undefined on input line 124.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 42 undefined on input
> line 146.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping susceptibility' on page 42 undefined
> on input line 152.
>
>
> LaTeX Warning: Reference `EQU:REG:1' on page 42 undefined on input line 155.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 42 undefined on input
> line 158.
>
>
> LaTeX Warning: Reference `Chp:cook:joint inversion' on page 42 undefined on inp
> ut line 166.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 42 undefined on input
> line 174.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping' on page 42 undefined on input line 1
> 75.
>
>
> LaTeX Warning: Reference `sec:forward gravity' on page 42 undefined on input li
> ne 176.
>
>
> LaTeX Warning: Reference `sec:forward self demagnetic' on page 42 undefined on
> input line 178.
>
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 42 undefined on input l
> ine 179.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 42 undefined on inp
> ut line 181.
>
>
> LaTeX Warning: Citation `Nocedal1980' on page 42 undefined on input line 182.
>
> [42
> Chapter 2.
>
> LaTeX Warning: Reference `FirstSteps' on page 39 undefined on input line 31.
>
>
> LaTeX Warning: Citation `OPENMP' on page 39 undefined on input line 46.
>
>
> LaTeX Warning: Citation `MPI' on page 39 undefined on input line 47.
>
> [39]]
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 43 undefined on input
> line 213.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping density' on page 43 undefined on inpu
> t line 219.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping susceptibility' on page 43 undefined
> on input line 224.
>
>
> LaTeX Warning: Reference `EQU:REG:1' on page 43 undefined on input line 227.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 43 undefined on input
> line 231.
>
>
> LaTeX Warning: Reference `Chp:ref:domain builder' on page 43 undefined on input
> line 233.
>
> )) [43] [40
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.tex] [44]cd /<<PKGBUILDDIR>>/doc && zip /<<PKGBUILDDIR>>/debian/stage3/release/doc/escript_examples.zip examples/usersguide/lid_driven_cavity.py examples/usersguide/mount.py examples/usersguide/heatedblock.py examples/usersguide/helmholtz.py examples/usersguide/fluid.py examples/usersguide/poisson.py examples/usersguide/diffusion.py examples/usersguide/poisson_vtk.py examples/usersguide/darcy.py examples/usersguide/dirac.py examples/usersguide/slip.py examples/usersguide/int_save.py examples/usersguide/wave.py examples/usersguide/voxet_reader.py examples/geotutorial/steadystate_variablek.py examples/geotutorial/steadystate.py examples/geotutorial/forward_euler.py examples/geotutorial/myfirstscript.py examples/geotutorial/backward_euler.py examples/cookbook/example01a.py examples/cookbook/example01b.py examples/cookbook/example03b.py examples/inversion/create_netcdf.py examples/inversion/grav_ermapper.py examples/inversion/grav_netcdf.py examples/inversion/gravmag_netcdf.py examples/inversion/gravmag_nodriver.py examples/inversion/mag_netcdf.py examples/inversion/test_commemi1.py examples/inversion/test_commemi4.py examples/usersguide/trapezoid.py examples/usersguide/quad.py examples/usersguide/brick.py examples/usersguide/refine.py examples/usersguide/poisson_matplotlib.py examples/cookbook/example01c.py examples/cookbook/example02.py examples/cookbook/example03a.py examples/cookbook/example04a.py examples/cookbook/example04b.py examples/cookbook/example05a.py examples/cookbook/example05b.py examples/cookbook/example05c.py examples/cookbook/example06.py examples/cookbook/example07a.py examples/cookbook/example07b.py examples/cookbook/example08a.py examples/cookbook/example08b.py examples/cookbook/example08c.py examples/cookbook/example09m.py examples/cookbook/example09a.py examples/cookbook/example10a.py examples/cookbook/example10b.py examples/cookbook/example10m.py examples/cookbook/example11a.py examples/cookbook/example11b.py examples/inversion/plot_ermapper.py examples/inversion/plot_netcdf.py examples/inversion/dc_forward.py examples/cookbook/cblib.py examples/inversion/content.txt examples/inversion/data/GravitySmall examples/inversion/data/MagneticSmall examples/inversion/data/QLDWestGravity examples/inversion/data/QLDWestMagnetic examples/inversion/data/GravitySmall.ers examples/inversion/data/MagneticSmall.ers examples/inversion/data/QLDWestGravity.ers examples/inversion/data/QLDWestMagnetic.ers examples/inversion/data/GravitySmall.nc examples/inversion/data/MagneticSmall.nc examples/inversion/data/QLDWestGravity.nc examples/inversion/data/QLDWestMagnetic.nc examples/inversion/data/HalfSphere_v1.4.msh
> adding: examples/usersguide/lid_driven_cavity.py (deflated 55%)
> adding: examples/usersguide/mount.py (deflated 60%)
> adding: examples/usersguide/heatedblock.py (deflated 58%)
> adding: examples/usersguide/helmholtz.py (deflated 56%)
> adding: examples/usersguide/fluid.py (deflated 56%)
> adding: examples/usersguide/poisson.py (deflated 56%)
> adding: examples/usersguide/diffusion.py (deflated 56%)
> adding: examples/usersguide/poisson_vtk.py (deflated 56%)
> adding: examples/usersguide/darcy.py (deflated 57%)
> adding: examples/usersguide/dirac.py (deflated 57%)
> adding: examples/usersguide/slip.py (deflated 57%)
> adding: examples/usersguide/int_save.py (deflated 56%)
> adding: examples/usersguide/wave.py (deflated 60%)
> adding: examples/usersguide/voxet_reader.py) (deflated 67%)
> adding: examples/geotutorial/steadystate_variablek.py (deflated 55%)
> adding: examples/geotutorial/steadystate.py (deflated 55%)
> adding: examples/geotutorial/forward_euler.py (deflated 56%)
> adding: examples/geotutorial/myfirstscript.py (deflated 55%)
> adding: examples/geotutorial/backward_euler.py (deflated 56%)
> adding: examples/cookbook/example01a.py (deflated 57%)
> adding: examples/cookbook/example01b.py [41 (deflated 57%)
> adding: examples/cookbook/example03b.py (deflated 58%)
> adding: examples/inversion/create_netcdf.py (deflated 60%)
> adding: examples/inversion/grav_ermapper.py (deflated 57%)
> adding: examples/inversion/grav_netcdf.py (deflated 58%)
> adding: examples/inversion/gravmag_netcdf.py (deflated 60%)
> adding: examples/inversion/gravmag_nodriver.py (deflated 60%)
> adding: examples/inversion/mag_netcdf.py (deflated 59%)
> adding: examples/inversion/test_commemi1.py] (deflated 73%)
> adding: examples/inversion/test_commemi4.py [42 (deflated 75%)
> adding: examples/usersguide/trapezoid.py] (deflated 57%)
> adding: examples/usersguide/quad.py (deflated 56%)
> adding: examples/usersguide/brick.py (deflated 59%)
> adding: examples/usersguide/refine.py (deflated 56%)
> adding: examples/usersguide/poisson_matplotlib.py (deflated 59%)
> adding: examples/cookbook/example01c.py (deflated 58%)
> adding: examples/cookbook/example02.py (deflated 58%)
> adding: examples/cookbook/example03a.py (deflated 58%)
> adding: examples/cookbook/example04a.py (deflated 60%)
> adding: examples/cookbook/example04b.py (deflated 59%)
> adding: examples/cookbook/example05a.py (deflated 60%)
> adding: examples/cookbook/example05b.py (deflated 63%)
> adding: examples/cookbook/example05c.py (deflated 60%)
> adding: examples/cookbook/example06.py (deflated 62%)
> adding: examples/cookbook/example07a.py
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.tex (deflated 60%)
> adding: examples/cookbook/example07b.py (deflated 60%)
> adding: examples/cookbook/example08a.py (deflated 60%)
> adding: examples/cookbook/example08b.py (deflated 62%)
> adding: examples/cookbook/example08c.py (deflated 62%)
> adding: examples/cookbook/example09m.py (deflated 66%)
> adding: examples/cookbook/example09a.py (deflated 61%)
> adding: examples/cookbook/example10a.py (deflated 58%)
> adding: examples/cookbook/example10b.py (deflated 58%)
> adding: examples/cookbook/example10m.py (deflated 62%)
> adding: examples/cookbook/example11a.py (deflated 58%)
> adding: examples/cookbook/example11b.py (deflated 59%)
> adding: examples/inversion/plot_ermapper.py (deflated 60%)
> adding: examples/inversion/plot_netcdf.py
> Chapter 6.
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 45 undefined on input li
> ne 11.
>
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 45 undefined on input li
> ne 21.
>
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 45 undefined on input li
> ne 26.
>
>
> LaTeX Warning: Reference `fig:geodeticDomain' on page 45 undefined on input lin
> e 46.
>
>
> LaTeX Warning: Citation `Featherstone2008a' on page 45 undefined on input line
> 48.
>
>
> LaTeX Warning: Reference `REF:FIG:REF:10' on page 45 undefined on input line 79
> .
>
> [45 (deflated 56%)
> adding: examples/inversion/dc_forward.py (deflated 63%)
> adding: examples/cookbook/cblib.py (deflated 58%)
> adding: examples/inversion/content.txt (deflated 77%)
> adding: examples/inversion/data/GravitySmall (deflated 3%)
> adding: examples/inversion/data/MagneticSmall (deflated 1%)
> adding: examples/inversion/data/QLDWestGravity>]] (deflated 11%)
> adding: examples/inversion/data/QLDWestMagnetic [46
> Chapter 3.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example03.tex </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//cartesian.pdf (deflated 7%)
> adding: examples/inversion/data/GravitySmall.ers (deflated 49%)
> adding: examples/inversion/data/MagneticSmall.ers (deflated 49%)
> adding: examples/inversion/data/QLDWestGravity.ers (deflated 50%)
> adding: examples/inversion/data/QLDWestMagnetic.ers (deflated 50%)
> adding: examples/inversion/data/GravitySmall.nc
> Chapter 3.
> [43 (deflated 46%)
> adding: examples/inversion/data/MagneticSmall.nc (deflated 43%)
> adding: examples/inversion/data/QLDWestGravity.nc] (deflated 12%)
> adding: examples/inversion/data/QLDWestMagnetic.nc>] (deflated 9%)
> adding: examples/inversion/data/HalfSphere_v1.4.msh [47
>
> LaTeX Warning: Reference `SEC Projection' on page 44 undefined on input line 79
> .
>
>
> LaTeX Warning: Reference `SEC Projection' on page 44 undefined on input line 79
> .
>
>
> Underfull \hbox (badness 1648) in paragraph at lines 79--79
> [] \OT1/ptm/m/sc/9 Fig-ure 3.1\OT1/ptm/m/n/9 : []De-pen-dency of func-tion spac
> es in []. An ar-row in-di-cates that a func-tion in the
>
> LaTeX Warning: Citation `LBB' on page 44 undefined on input line 83.
>
>
> LaTeX Warning: Reference `ESCRIPT DEP' on page 44 undefined on input line 88.
>
>
> LaTeX Warning: Reference `ESCRIPT DEP' on page 44 undefined on input line 107.
>
>
> LaTeX Warning: Reference `ESCRIPT DEP' on page 44 undefined on input line 119.
>
>
> LaTeX Warning: Reference `SEC Projection' on page 44 undefined on input line 12
> 1.
>
> [44 </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//geosphir.png </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram1.pdf>]
> Underfull \hbox (badness 10000) in paragraph at lines 22--23
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 22--23
>
>
> LaTeX Warning: Reference `fig:twodhdmodel' on page 27 undefined on input line 3
> 0.
>
>
> LaTeX Warning: Reference `Sec:1DHDv00' on page 27 undefined on input line 32.
>
>
> LaTeX Warning: Reference `fig:twodhdmodel' on page 27 undefined on input line 4
> 6.
>
>
> LaTeX Warning: Reference `Sec:1DHDv00' on page 27 undefined on input line 66.
>
>
> LaTeX Warning: Reference `eqn:hd' on page 27 undefined on input line 72.
>
>
> LaTeX Warning: Reference `Sec:1DHDv00' on page 27 undefined on input line 73.
>
> [27]
>
> LaTeX Warning: Citation `NUMPY' on page 45 undefined on input line 150.
>
> [45]
>
> LaTeX Warning: Reference `eqn:commonform nabla' on page 28 undefined on input l
> ine 87.
>
>
> LaTeX Warning: Reference `eqn:hdgenf' on page 28 undefined on input line 98.
>
>
> LaTeX Warning: Reference `eqn:commonform2D' on page 28 undefined on input line
> 102.
>
>
> LaTeX Warning: Reference `ESCRIPT SET' on page 28 undefined on input line 113.
>
>
> LaTeX Warning: Reference `eqn: kappa general' on page 28 undefined on input lin
> e 125.
>
> [28pdfTeX warning (ext4): destination with the same identifier (name{figure.3.1
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.141 \begin{python}
> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/cookbook/figures/twodheatdiff.pdf>]
>
> LaTeX Warning: Reference `ESCRIPT DEP' on page 46 undefined on input line 245.
>
>
> LaTeX Warning: Reference `Figure: tag' on page 46 undefined on input line 265.
>
>
> LaTeX Warning: Reference `Figure: tag' on page 46 undefined on input line 276.
>
> [46]
>
> LaTeX Warning: Reference `eqn: kappa general' on page 29 undefined on input lin
> e 144.
>
>
> LaTeX Warning: Reference `NEUMAN 2' on page 29 undefined on input line 147.
>
>
> LaTeX Warning: Reference `Sec:1DHDv00' on page 29 undefined on input line 169.
>
>
> LaTeX Warning: Float too large for page by 12.55325pt on input line 232.
>
> [29]
>
> LaTeX Warning: Citation `NETCDF' on page 47 undefined on input line 318.
>
> [47 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram2.pdf>]>]
>
> LaTeX Warning: Reference `sec: plot T' on page 30 undefined on input line 243.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd)
>
> LaTeX Warning: Reference `sec:datamanager' on page 48 undefined on input line 3
> 68.
>
> [48]
>
> LaTeX Warning: Reference `equ:ref:coordinates:100' on page 48 undefined on inpu
> t line 211.
>
>
> LaTeX Warning: Reference `REF:FIG:REF:10' on page 48 undefined on input line 25
> 1.
>
>
> LaTeX Warning: Reference `REF:FIG:REF:10' on page 48 undefined on input line 25
> 5.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 261--261
> [][][]\OT1/ptm/m/n/8 In gen-eral any or-thog-o-nal co-or-di-nate trans-for-ma-t
> ion can be sup-ported by build-ing sub-classes of the
> [48] [49]
> Overfull \hbox (46.961pt too wide) in paragraph at lines 286--287
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
>
>
> LaTeX Warning: Reference `fig:twodhdans' on page 30 undefined on input line 301
> .
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 306--311
>
> [30] (deflated 65%)
> [50]Mkdir("/<<PKGBUILDDIR>>/debian/stage3/release/doc/doxygen")
> [49](cat doc/doxygen/doxygen_esys; echo "PROJECT_NUMBER="Revision_`svnversion`""; echo OUTPUT_DIRECTORY="/<<PKGBUILDDIR>>/debian/stage3/release/doc/doxygen" ) | doxygen -
> ) [50]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.tex [51]
> Chapter 7.
>
> LaTeX Warning: Reference `REF:EQU:INTRO 1' on page 51 undefined on input line 1
> 8.
>
>
> LaTeX Warning: Citation `Nocedal1980' on page 51 undefined on input line 40.
>
>
> LaTeX Warning: Reference `EQU:MIN:2' on page 51 undefined on input line 67.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 51 undefined on input
> line 68.
>
> [51]
>
> LaTeX Warning: Reference `fig:mayavi window' on page 31 undefined on input line
> 360.
>
>
> LaTeX Warning: Reference `fig:mayavi window2' on page 31 undefined on input lin
> e 365.
>
> ) [31]
>
> LaTeX Warning: Reference `chapter:ref:Minimization: costfunction class' on page
> 52 undefined on input line 96.
>
>
> LaTeX Warning: Reference `EQU:MIN:3a' on page 52 undefined on input line 106.
>
>
> LaTeX Warning: Reference `EQU:MIN:3b' on page 52 undefined on input line 108.
>
>
> LaTeX Warning: Reference `EQU:MIN:3a' on page 52 undefined on input line 110.
>
>
> LaTeX Warning: Reference `EQU:MIN:3b' on page 52 undefined on input line 111.
>
> [52 [32pdfTeX warning (ext4): destination with the same identifier (name{fig
> ure.3.2}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.112 \chapter
> {Complex Geometries} </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/cookbook/figures/heatrefraction001.png] [52
>
> LaTeX Warning: Citation `Nocedal1980' on page 53 undefined on input line 215.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)]
>
> LaTeX Warning: Reference `sec:LineSearch' on page 53 undefined on input line 22
> 6.
>
> [53]sh: 1: svnversion: not found
>
>
> LaTeX Warning: Citation `Nocedal2006' on page 54 undefined on input line 256.
>
>
> LaTeX Warning: Citation `MoreThuente1992' on page 54 undefined on input line 25
> 7.
>
> )warning: Tag 'TCL_SUBST' at line 237 of file '-' has become obsolete.
> To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
> [54warning: Tag 'PERL_PATH' at line 2057 of file '-' has become obsolete.
> To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
> warning: Tag 'MSCGEN_PATH' at line 2079 of file '-' has become obsolete.
> To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
> ]warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
> Using the default: a4!
>
> Underfull \vbox (badness 1348) has occurred while \output is active [53]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.tex
> Chapter 8.
>
> LaTeX Warning: Reference `chapter:ref:Drivers' on page 55 undefined on input li
> ne 2.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 55 undefined on input
> line 6.
>
>
> LaTeX Warning: Reference `Chp:ref:forward models' on page 55 undefined on input
> line 7.
>
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 55 undefined on inp
> ut line 12.
>
> [55]
>
> LaTeX Warning: Reference `chapter:ref:Minimization: costfunction class' on page
> 56 undefined on input line 61.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 56 undefined on input
> line 65.
>
>
> LaTeX Warning: Reference `Chp:ref:mapping' on page 56 undefined on input line 6
> 7.
>
>
> LaTeX Warning: Reference `Chp:ref:forward models' on page 56 undefined on input
> line 72.
>
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 56 undefined on in
> put line 79.
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 56 undefined on input line 83.
>
>
> LaTeX Warning: Reference `REF:EQU:DRIVE:10' on page 56 undefined on input line
> 90.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 56 undefined on input
> line 99.
>
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 56 undefined on input
> line 121.
>
> [56]
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 57 undefined on input line 181.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 57 undefined on input line 186.
>
> [57
>
> LaTeX Warning: Reference `chap:ripley' on page 54 undefined on input line 880.
>
>
> LaTeX Warning: Citation `gaussfilter' on page 54 undefined on input line 909.
>
> [54]]
>
> LaTeX Warning: Reference `chapter:ref:Minimization' on page 58 undefined on inp
> ut line 220.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 58 undefined on input line 246.
>
>
> LaTeX Warning: Reference `REF:EQU:INTRO 2b' on page 58 undefined on input line
> 247.
>
> [58] [55]
>
> LaTeX Warning: Reference `REF:EQU:costfunction 100b' on page 59 undefined on in
> put line 281.
>
>
> LaTeX Warning: Reference `REF:EQU:costfunction 100' on page 59 undefined on inp
> ut line 332.
>
>
> LaTeX Warning: Reference `REF:EQU:costfunction 100d' on page 59 undefined on in
> put line 334.
>
>
> LaTeX Warning: Reference `REF:EQU:costfunction 100b' on page 59 undefined on in
> put line 335.
>
>
> LaTeX Warning: Reference `REF:EQU:costfunction 100d' on page 59 undefined on in
> put line 344.
>
> [59> </build/pyth
> on-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/hea
> trefraction030.png]) [60]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.tex [56]
> Chapter 9.
>
> LaTeX Warning: Reference `fig:domainBuilder' on page 61 undefined on input line
> 19.
>
> [61 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inve
> rsion/figures//domainbuilder.pdf>] [57]
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 62 undefined on in
> put line 44.
>
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 62 undefined on in
> put line 53.
>
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 62 undefined on input li
> ne 62.
>
>
> LaTeX Warning: Reference `fig:cartesianDomain' on page 62 undefined on input li
> ne 65.
>
> [62] [58]
>
> LaTeX Warning: Citation `ESCRIPT' on page 63 undefined on input line 158.
>
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 63 undefined on in
> put line 204.
>
> [63]
>
> LaTeX Warning: Citation `ERMAPPER' on page 64 undefined on input line 277.
>
> [64] [59]Doxygen version used: 1.8.20
> Searching for include files...
> Searching for example files...
> Searching for images...
> Searching for dot files...
> Searching for msc files...
> Searching for dia files...
> Searching for files to exclude
> Searching INPUT for files to process...
> Searching for files in directory /<<PKGBUILDDIR>>/escriptcore/src
> Searching for files in directory /<<PKGBUILDDIR>>/dudley/src
> Searching for files in directory /<<PKGBUILDDIR>>/finley/src
> Searching for files in directory /<<PKGBUILDDIR>>/paso/src
> Searching for files in directory /<<PKGBUILDDIR>>/pythonMPI/src
> Searching for files in directory /<<PKGBUILDDIR>>/ripley/src
> Searching for files in directory /<<PKGBUILDDIR>>/speckley/src
> Searching for files in directory /<<PKGBUILDDIR>>/weipa/src
> Reading and parsing tag files
> Parsing files
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractContinuousDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractContinuousDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractContinuousDomain.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractContinuousDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractDomain.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractReducer.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractReducer.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractReducer.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractReducer.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractSystemMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractSystemMatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractSystemMatrix.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractSystemMatrix.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractTransportProblem.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractTransportProblem.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/AbstractTransportProblem.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/AbstractTransportProblem.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ArrayOps.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ArrayOps.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ArrayOps.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ArrayOps.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Assert.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Assert.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/BinaryDataReadyOps.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/BinaryDataReadyOps.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/BinaryDataReadyOps.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/BinaryDataReadyOps.h...
> Prepr [60]
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:DATAHOLES' on page 65 undefined on
> input line 309.
>
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 65 undefined on in
> put line 311.
>
>
> LaTeX Warning: Citation `NETCDF' on page 65 undefined on input line 318.
>
>
> LaTeX Warning: Citation `matplotlib' on page 65 undefined on input line 328.
>
>
> LaTeX Warning: Reference `SEC:P1:GRAV:REMARK:DATAHOLES' on page 65 undefined on
> input line 358.
>
>
> LaTeX Warning: Reference `sec:ref:reference systems' on page 65 undefined on in
> put line 359.
>
> [65]
>
> LaTeX Warning: Reference `eq:synthdata' on page 66 undefined on input line 430.
>
>
> ) [66]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.tex [61]
> Chapter 10.
>
> LaTeX Warning: Citation `GALLARDO2005a' on page 67 undefined on input line 28.
>
> [67> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/cookbook/figures/heatrefraction200.png]
>
> LaTeX Warning: Reference `ref:EQU:REG:7' on page 68 undefined on input line 96.
>
>
>
> LaTeX Warning: Reference `ref:EQU:REG:5' on page 68 undefined on input line 98.
>
>
>
> LaTeX Warning: Reference `ref:EQU:REG:6' on page 68 undefined on input line 99.
>
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 68 undefined on input line 147.
>
> [68]) [69]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.tex [70]
> Chapter 11.
>
> LaTeX Warning: Reference `Chp:ref:regularization' on page 71 undefined on input
> line 3.
>
> [71]) [62 [72]]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.tex
> Chapter 12.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardGravity.tex [63
>
> LaTeX Warning: Reference `ref:GRAV:EQU:101' on page 73 undefined on input line
> 37.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function' on page 73 undef
> ined on input line 41.
>
>
> LaTeX Warning: Reference `ref:EQU:REG:6b' on page 73 undefined on input line 70
> .
>
>
> LaTeX Warning: Reference `Chp:ref:coordinates' on page 73 undefined on input li
> ne 88.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:100' on page 73 undefined on input line
> 89.
>
> [73]]
>
> LaTeX Warning: Reference `ref:GRAV:EQU:12' on page 74 undefined on input line 9
> 9.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 74 undefined on input line 109.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:100' on page 74 undefined on input line
> 110.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:201' on page 74 undefined on input line
> 117.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:201' on page 74 undefined on input line
> 143.
>
>
> LaTeX Warning: Reference `Chp:ref:coordinates' on page 74 undefined on input li
> ne 162.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:9' on page 74 undefined on input line 16
> 4.
>
> [74]
>
> LaTeX Warning: Reference `ref:GRAV:EQU:10' on page 75 undefined on input line 1
> 70.
>
>
> LaTeX Warning: Reference `ref:GRAV:EQU:201' on page 75 undefined on input line
> 194.
>
> )/<<PKGBUILDDIR>>/escriptcore/src/DataLazy.cpp:3008: warning: Reached end of file while still inside a (nested) comment. Nesting level 1 (probable line reference: 55)
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagnetic.tex
>
> LaTeX Warning: Citation `IGRF' on page 75 undefined on input line 34.
>
>
> LaTeX Warning: Citation `AGRF' on page 75 undefined on input line 35.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:1' on page 75 undefined on input line 45.
>
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:4' on page 75 undefined on input line 45.
>
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:8' on page 75 undefined on input line 61.
>
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function' on page 75 undef
> ined on input line 65.
>
> [75
> Overfull \hbox (30.76083pt too wide) in paragraph at lines 1718--1719
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [64]]
>
> LaTeX Warning: Reference `ref:EQU:REG:6b' on page 76 undefined on input line 10
> 1.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:8' on page 76 undefined on input line 119
> .
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:12' on page 76 undefined on input line 12
> 9.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 76 undefined on input line 139.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:8' on page 76 undefined on input line 141
> .
>
> [76]
>
> LaTeX Warning: Reference `ref:MAG:EQU:201' on page 77 undefined on input line 1
> 47.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:201' on page 77 undefined on input line 1
> 73.
>
>
> LaTeX Warning: Reference `Chp:ref:coordinates' on page 77 undefined on input li
> ne 192.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:9' on page 77 undefined on input line 194
> .
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:10' on page 77 undefined on input line 20
> 0.
>
> [77>]ocessing /<<PKGBUILDDIR>>/escriptcore/src/Data.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Data.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Data.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Data.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataAbstract.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataAbstract.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataAbstract.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataAbstract.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataConstant.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataConstant.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataConstant.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataConstant.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataEmpty.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataEmpty.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataEmpty.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataEmpty.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataExpanded.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataExpanded.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataExpanded.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataExpanded.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataFactory.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataFactory.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataFactory.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataFactory.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataLazy.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataLazy.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataLazy.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataLazy.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataReady.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataReady.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataReady.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataReady.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataTypes.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataTypes.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataTypes.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataTypes.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp...
> Parsing file /<<BUILDDIR>>/python [33pdfTeX warning (ext4):
> destination with the same identifier (name{figure.3.3}) has been already used,
> duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.112 \chapter
> {Complex Geometries}pdfTeX warning (ext4): destination with the s
> ame identifier (name{figure.3.4}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.112 \chapter
> {Complex Geometries} </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/cookbook/figures/ScreeshotMayavi2n1.png]
>
> LaTeX Warning: Reference `ref:MAG:EQU:201' on page 78 undefined on input line 2
> 32.
>
> )
> Overfull \hbox (10.1535pt too wide) in paragraph at lines 1742--1743
> \OT1/pcr/m/n/10 Data \OT1/ptm/m/n/10 ob-jects can be con-verted into a numpy st
> ruc-tured ar-ray us-ing the com-mands \OT1/pcr/m/n/10 getNumpy \OT1/ptm/m/n/10
> and \OT1/pcr/m/n/10 convertNumpy\OT1/ptm/m/n/10 .
> [65]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagneticIntensity.tex
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 78 undefined on input l
> ine 28.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function' on page 78 undef
> ined on input line 44.
>
> [78]
>
> LaTeX Warning: Reference `ref:EQU:REG:6b' on page 79 undefined on input line 79
> .
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:8' on page 79 undefined on input line 97.
>
>
>
> LaTeX Warning: Reference `ref:IMAG:EQU:12' on page 79 undefined on input line 1
> 07.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 79 undefined on input line 117.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:8' on page 79 undefined on input line 119
> .
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:201' on page 79 undefined on input line 1
> 25.
>
> [79]
>
> LaTeX Warning: Reference `ref:IMAG:EQU:201' on page 80 undefined on input line
> 153.
>
> ) [66]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardSelfMagnetic.tex
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 80 undefined on input l
> ine 18.
>
>
> LaTeX Warning: Citation `Lelievre2006a' on page 80 undefined on input line 21.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:1' on page 80 undefined on input line 23.
>
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:4' on page 80 undefined on input line 29.
>
>
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 80 undefined on input l
> ine 36.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:1' on page 80 undefined on input li
> ne 44.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:4' on page 80 undefined on input li
> ne 44.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:8' on page 80 undefined on input li
> ne 60.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function' on page 80 undef
> ined on input line 64.
>
>
> LaTeX Warning: Reference `sec:forward magnetic' on page 80 undefined on input l
> ine 74.
>
> [80 [67]] [68]-escript-5.5/escriptcore/src/DataVector.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorAlt.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorAlt.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorAlt.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorAlt.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorTaipan.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorTaipan.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DataVectorTaipan.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorTaipan.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Distribution.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Distribution.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Dodgy.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Dodgy.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Dodgy.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Dodgy.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/DomainException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/DomainException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ES_optype.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ES_optype.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ES_optype.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ES_optype.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/escriptcpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/escriptcpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/EscriptParams.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/EscriptParams.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/EscriptParams.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/EscriptParams.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/EsysException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/EsysException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/EsysMPI.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/EsysMPI.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/EsysMPI.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/EsysMPI.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ExceptionTranslators.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ExceptionTranslators.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/ExceptionTranslators.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/ExceptionTranslators.h...
> Pr
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:8' on page 81 undefined on input li
> ne 90.
>
>
> LaTeX Warning: Reference `ref:MAG:EQU:12' on page 81 undefined on input line 10
> 0.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 81 undefined on input line 111.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:8' on page 81 undefined on input li
> ne 113.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:201' on page 81 undefined on input
> line 134.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:201aa' on page 81 undefined on inpu
> t line 141.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:201A' on page 81 undefined on input
> line 155.
>
> [81] [69]
>
> LaTeX Warning: Reference `Chp:ref:coordinates' on page 82 undefined on input li
> ne 179.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:9' on page 82 undefined on input li
> ne 181.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:10' on page 82 undefined on input l
> ine 191.
>
>
> LaTeX Warning: Reference `ref:SELFREMAG:EQU:201' on page 82 undefined on input
> line 225.
>
> )/<<PKGBUILDDIR>>/escriptcore/src/NCHelper.h:23: warning: include file string not found, perhaps you forgot to add its directory to INCLUDE_PATH?
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Forward2DMTTEMode.tex
>
> LaTeX Warning: Citation `chave2012magnetotelluric' on page 82 undefined on inpu
> t line 18.
>
> [82eprocessing /<<PKGBUILDDIR>>/escriptcore/src/FileWriter.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FileWriter.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpace.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpace.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpace.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpace.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceFactory.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceFactory.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceFactory.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/FunctionSpaceFactory.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/index.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/index.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/IndexList.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/IndexList.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/LapackInverseHelper.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/LapackInverseHelper.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/LapackInverseHelper.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/LapackInverseHelper.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/MPIDataReducer.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/MPIDataReducer.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/MPIDataReducer.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/MPIDataReducer.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/MPIScalarReducer.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/MPIScalarReducer.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/MPIScalarReducer.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/MPIScalarReducer.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NCHelper.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NCHelper.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NCHelper.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NCHelper.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NonReducedVariable.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NonReducedVariable.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NonReducedVariable.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NonReducedVariable.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NullDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NullDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/NullDomain.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/NullDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Pointers.h...
> Parsing file /<<PKGBUILDDIR>>/escriptco]
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:3' on page 83 undefined on input line
> 80.
>
> [83] [70]> </build/pyt
> hon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/Sc
> reeshotMayavi2n2.png
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:6' on page 84 undefined on input line
> 98.
>
>
> LaTeX Warning: Reference `chapter:ref:inversion cost function:gradient' on page
> 84 undefined on input line 107.
>
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:104' on page 84 undefined on input lin
> e 125.
>
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:201aa' on page 84 undefined on input l
> ine 133.
>
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:201A' on page 84 undefined on input li
> ne 146.
>
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:202d' on page 84 undefined on input li
> ne 147.
>
>
> LaTeX Warning: Reference `ref:2DMTTE:EQU:201A' on page 84 undefined on input li
> ne 147.
>
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardDCRES.tex [84]re/src/Pointers.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/pyerr.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/pyerr.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/pyerr.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/pyerr.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Random.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Random.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Random.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Random.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SplitWorld.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SplitWorld.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SplitWorld.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SplitWorld.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SplitWorldException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SplitWorldException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SubWorld.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SubWorld.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SubWorld.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SubWorld.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/system_dep.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/system_dep.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/SystemMatrixException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/SystemMatrixException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Taipan.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Taipan.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Taipan.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Taipan.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/TestDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/TestDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/TestDomain.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/TestDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/TransportProblemException.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/TransportProblemException.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Utils.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Utils.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/Utils.h...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/Utils.h...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/WrappedArray.cpp...
> Parsing file /<<PKGBUILDDIR>>/escriptcore/src/WrappedArray.cpp...
> Preprocessing /<<PKGBUILDDIR>>/escriptcore/src/WrappedArray.h...
> Parsing fi
>
> LaTeX Warning: Citation `rucker2006three' on page 85 undefined on input line 32
> .
>
>
> LaTeX Warning: Citation `LOKE2014' on page 85 undefined on input line 62.
>
> [85]
>
> LaTeX Warning: Citation `LOKE2014' on page 86 undefined on input line 124.
>
> [86])) [87] [88]
> No file inversion.ind.
> No file inversion.bbl.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.aux [71)]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.aux)
>
> LaTeX Warning: Citation `lazyauspdc' on page 72 undefined on input line 2248.
>
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.aux) [72]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.aux)le /<<PKGBUILDDIR>>/escriptcore/src/WrappedArray.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_addToSystemMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_addToSystemMatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_AverageElementData.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_AverageElementData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_CopyElementData.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_CopyElementData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_CopyNodalData.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_CopyNodalData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_getAssembleParameters.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_getAssembleParameters.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_getNormal.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_getNormal.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_getSize.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_getSize.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_gradient.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_gradient.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_integrate.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_integrate.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_interpolate.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_interpolate.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_jacobians.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_jacobians.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_LumpedSystem.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_LumpedSystem.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_NodeCoordinates.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_NodeCoordinates.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Points.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Points.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Single_2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Single_2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Single_3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_Single_3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_System_2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_System_2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Assemble_PDE_System_3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Assemble_>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.tex [34)]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.aux)
> Chapter 4.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example04.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.aux))
>
> Package rerunfilecheck Warning: File `inversion.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb
> Chapter 4.
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.3' on page 73 undefined on input lin
> e 59.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1' on page 73 undefined on input lin
> e 60.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.2' on page 73 undefined on input lin
> e 60.
>
> [73></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx5.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmbx7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex1
> 0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra/cmex7.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfbPDE_System_3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DomainFactory.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DomainFactory.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DomainFactory.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DomainFactory.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Dudley.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Dudley.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/dudleycpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/dudleycpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DudleyException.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DudleyException.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/DudleyVersion.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/DudleyVersion.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementFile.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementFile.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementFile.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementFile.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementFile_createColoring.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementFile_createColoring.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementFile_distributeByRankOfDOF.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementFile_distributeByRankOfDOF.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementFile_jacobians.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementFile_jacobians.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ElementType.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ElementType.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/IndexList.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/IndexList.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/IndexList.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/IndexList.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_distributeByRankOfDOF.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_distributeByRankOfDOF.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_getPattern.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_getPattern.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_optimizeDOFDistribution.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_optimizeDOFDistribution.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_optimizeDOFLabeling.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_optimizeDOFLabeling.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_read.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_read.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/M></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb
>
> LaTeX Warning: Reference `ELASTIC CHAP' on page 74 undefined on input line 79.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.4' on page 74 undefined on input lin
> e 132.
>
>
> LaTeX Warning: Reference `CHAP: Tutorial' on page 74 undefined on input line 14
> 6.
>
> [74></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb]></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb
>
> LaTeX Warning: Reference `CHAP HEAT 2a' on page 35 undefined on input line 38.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 37--41
>
>
> LaTeX Warning: Reference `fig:pycad rec' on page 35 undefined on input line 57.
>
>
> [35>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></u
> sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/shar
> e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texli
> ve/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic
> /uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb>
> </usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfbesh_readGmsh.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_readGmsh.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_resolveNodeIds.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_resolveNodeIds.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_tet4.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_tet4.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_tri3.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_tri3.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Mesh_write.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Mesh_write.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile_createDenseLabelings.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile_createDenseLabelings.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile_createMappings.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile_createMappings.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile_createTrilinosGraph.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile_createTrilinosGraph.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeFile_gather.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeFile_gather.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/NodeMapping.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/NodeMapping.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ShapeTable.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ShapeTable.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/ShapeTable.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/ShapeTable.h...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Util.cpp...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Util.cpp...
> Preprocessing /<<PKGBUILDDIR>>/dudley/src/Util.h...
> Parsing file /<<PKGBUILDDIR>>/dudley/src/Util.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_addToSystemMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_addToSystemMatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_AverageElementData.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_AverageElementData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_CopyElementData.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_CopyElementData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_CopyNodalData.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_CopyNodalData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_getAssembleParameters.cpp...
> Parsing file /<<PKGBUILDDIR>>/fin>
>
> LaTeX Warning: Reference `TRILINOS' on page 75 undefined on input line 181.
>
>
> Overfull \hbox (18.97215pt too wide) in paragraph at lines 180--182
> \OT1/ptm/m/n/10 Typically, a neg-a-tive value for a di-ag-nos-tic vari-able in-
> di-cates that it is un-de-fined. For more de-tails on \OT1/pcr/m/n/10 SolverOpt
> ions
> [75</usr/share/texlive/texmf-
> dist/fonts/type1/urw/times/utmb8a.pfb]></usr/share/texlive/texmf-dist/fonts/type
> 1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utm
> r8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
>
> LaTeX Warning: Reference `SEC Solver Options' on page 76 undefined on input lin
> e 251.
>
>
> LaTeX Warning: Reference `SEC Solver Options' on page 76 undefined on input lin
> e 256.
>
>
> LaTeX Warning: Reference `LINEARPDE.SYSTEM.5' on page 76 undefined on input lin
> e 290.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.5' on page 76 undefined on input lin
> e 290.
>
> [76 [36]pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.1}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.139 \begin{python}
> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/cookbook/figures/pycadrec.pdf>]
> Output written on inversion.pdf (88 pages, 5248494 bytes).
> Transcript written on inversion.log.
> [77]cd debian/tmp3/posix/doc/inversion && bibtex inversion
>
>
> LaTeX Warning: Reference `ESCRIPT CHAP' on page 78 undefined on input line 418.
>
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1' on page 78 undefined on input lin
> e 422.
>
> [78ley/src/Assemble_getAssembleParameters.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_getNormal.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_getNormal.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_getSize.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_getSize.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_gradient.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_gradient.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_integrate.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_integrate.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_interpolate.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_interpolate.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_jacobians.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_jacobians.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_LumpedSystem.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_LumpedSystem.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_NodeCoordinates.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_NodeCoordinates.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Points.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Points.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_1D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_1D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_C.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_Single_C.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_1D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_1D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_C.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Assemble_PDE_System_C.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/DomainFactory.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/DomainFactory.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/DomainFactory.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/DomainFactory.h...
> Preprocessing /<<PKGBUILDDIR>>/finley]This is BibTeX, Version 0.99d (TeX Live 2020/Debian)
> The top-level auxiliary file: inversion.aux
> The style file: plain.bst
> Database file #1: inversion.bib
> cd debian/tmp3/posix/doc/inversion && makeindex inversion.idx
>
>
> LaTeX Warning: Reference `PROJ.1' on page 79 undefined on input line 453.
>
>
> LaTeX Warning: Reference `PROJ.1' on page 79 undefined on input line 474.
>
>
> LaTeX Warning: Reference `SEC Solver Options' on page 79 undefined on input lin
> e 483.
>
> [79]
>
> LaTeX Warning: Reference `fig:pycad rec mesh' on page 37 undefined on input lin
> e 187.
>
>
> LaTeX Warning: Reference `fig:pycad rec' on page 37 undefined on input line 191
> .
>
> [37] [38pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.2}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.194 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/simplemesh.png
>
> LaTeX Warning: Reference `TRILINOS' on page 80 undefined on input line 530.
>
>
> LaTeX Warning: Reference `WAVE CHAP' on page 80 undefined on input line 532.
>
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 1' on page 80 undefined on
> input line 544.
>
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 2' on page 80 undefined on
> input line 566.
>
>
> LaTeX Warning: Reference `TRILINOS' on page 80 undefined on input line 581.
>
> [80]This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
> Scanning input file inversion.idx....done (105 entries accepted, 0 rejected).
> Sorting entries....done (779 comparisons).
> Generating output file inversion.ind....done (94 lines written, 0 warnings).
> Output written in inversion.ind.
> Transcript written in inversion.ilg.
> [81] [82]cd debian/tmp3/posix/doc/inversion && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{inversion.tex} inversion.tex
> /src/ElementFile.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ElementFile.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ElementFile.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ElementFile.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ElementFile_jacobians.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ElementFile_jacobians.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Finley.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Finley.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/finleycpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/finleycpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/FinleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/FinleyException.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/FinleyException.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/FinleyVersion.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/FinleyVersion.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/IndexList.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/IndexList.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/IndexList.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/IndexList.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_addPoints.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_addPoints.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_findMatchingFaces.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_findMatchingFaces.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_getPasoPattern.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_getPasoPattern.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_getTrilinosGraph.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_getTrilinosGraph.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_glueFaces.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_glueFaces.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_hex20.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_hex20.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_hex8.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_hex8.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_joinFaces.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_joinFaces.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_merge.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_merge.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_optimizeDOFDistribution.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_optimizeDOFDistribution.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_read.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_read.cpp...
> Preprocessing /<<BUILDDIR>>/python-
>
> LaTeX Warning: Citation `MKL' on page 83 undefined on input line 914.
>
>
> LaTeX Warning: Citation `UMFPACK' on page 83 undefined on input line 919.
>
>
> LaTeX Warning: Reference `chap:finley' on page 83 undefined on input line 923.
>
> [83]This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
>
>
> LaTeX Warning: Citation `Saad' on page 84 undefined on input line 938.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 943.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 948.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 952.
>
>
> LaTeX Warning: Reference `LUMPING' on page 84 undefined on input line 962.
>
>
> LaTeX Warning: Reference `LUMPING' on page 84 undefined on input line 967.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 973.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 977.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 981.
>
>
> LaTeX Warning: Citation `WEISS' on page 84 undefined on input line 985.
>
>
> LaTeX Warning: Citation `Saad' on page 84 undefined on input line 991.
>
>
> LaTeX Warning: Citation `Saad' on page 84 undefined on input line 995.
>
>
> LaTeX Warning: Citation `AMG' on page 84 undefined on input line 999.
>
>
> LaTeX Warning: Citation `Saad' on page 84 undefined on input line 1004.
>
>
> LaTeX Warning: Citation `RILU' on page 84 undefined on input line 1015.
>
> [84]
>
> LaTeX Warning: Citation `Trilinos' on page 85 undefined on input line 1043.
>
>
> LaTeX Warning: Citation `AMG' on page 85 undefined on input line 1051.
>
>
> LaTeX Warning: Citation `AMG' on page 85 undefined on input line 1054.
>
>
> LaTeX Warning: Citation `AMG' on page 85 undefined on input line 1057.
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lum
> ping.tex
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1' on page 85 undefined on input lin
> e 59.
>
> [85]entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/esysdoc.cls
>
> LaTeX Warning: Reference `FIG LUMPING VALET A' on page 86 undefined on input li
> ne 72.
>
>
> LaTeX Warning: Reference `FIG LUMPING VALET B' on page 86 undefined on input li
> ne 78.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 89.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 89.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 96.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 96.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 3' on page 86 undefined on input l
> ine 103.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 3' on page 86 undefined on input l
> ine 103.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET' on page 86 undefined on input lin
> e 108.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 108.
>
>
> LaTeX Warning: Reference `LINEARPDE.SINGLE.1' on page 86 undefined on input lin
> e 114.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 2' on page 86 undefined on input l
> ine 116.
>
>
> LaTeX Warning: Reference `LUMPING WAVE VALET 3' on page 86 undefined on input l
> ine 116.
>
>
> LaTeX Warning: Reference `FIG LUMPING VALET C' on page 86 undefined on input li
> ne 119.
>
> [86 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//lumping_valet_a_1.png
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))escript-5.5/finley/src/Mesh_readGmsh.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_readGmsh.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_rec4.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_rec4.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_rec8.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_rec8.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Mesh_write.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Mesh_write.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/NodeFile.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/NodeFile.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/NodeFile.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/NodeFile.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/NodeMapping.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/NodeMapping.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Quadrature.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Quadrature.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Quadrature.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Quadrature.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ReferenceElements.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ReferenceElements.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ReferenceElements.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ReferenceElements.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ReferenceElementSets.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ReferenceElementSets.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ShapeFunctions.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ShapeFunctions.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/ShapeFunctions.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/ShapeFunctions.h...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Util.cpp...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Util.cpp...
> Preprocessing /<<PKGBUILDDIR>>/finley/src/Util.h...
> Parsing file /<<PKGBUILDDIR>>/finley/src/Util.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/BiCGStab.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/BiCGStab.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/BlockOps.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/BlockOps.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Coupler.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Coupler.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Coupler.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Coupler.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/FCT_Solver.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/FCT_Solver.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/FCT_Solver.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/FCT_Solver.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/FluxLimiter.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/FluxLimiter.cpp...
> Preprocessing /build/python-escri
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))pt-GiQz3M/python-escript-5.5/paso/src/FluxLimiter.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/FluxLimiter.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Functions.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Functions.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Functions.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Functions.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/GMRES.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/GMRES.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/GMRES2.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/GMRES2.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/ILU.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/ILU.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/MINRES.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/MINRES.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/MKL.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/MKL.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/MKL.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/MKL.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/mmio.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/mmio.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/mmio.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/mmio.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/NewtonGMRES.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/NewtonGMRES.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Options.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Options.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Options.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Options.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Paso.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Paso.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/PasoException.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/PasoException.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/PasoUtil.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/PasoUtil.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/PasoUtil.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/PasoUtil.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Pattern.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Pattern.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Pattern.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Pattern.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Pattern_mis.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Pattern_mis.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Pattern_reduceBandwidth.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Pattern_reduceBandwidth.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/PCG.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/PCG.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/performance.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/performance.cpp...
> Preprocessing /build/python-esc
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)ript-GiQz3M/python-escript-5.5/paso/src/performance.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/performance.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Preconditioner.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Preconditioner.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Preconditioner.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Preconditioner.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/ReactiveSolver.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/ReactiveSolver.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/ReactiveSolver.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/ReactiveSolver.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/RILU.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/RILU.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SchurComplement.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SchurComplement.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SharedComponents.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SharedComponents.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Smoother.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Smoother.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/solve.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/solve.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Solver.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Solver.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Solver.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Solver.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Solver_Function.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Solver_Function.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_getSubmatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_getSubmatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixMatrix.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixMatrixTranspose.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixMatrixTranspose.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixVector.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_MatrixVector.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_nullifyRowsAndCols.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_nullifyRowsAndCols.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SparseMatrix_saveHB.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SparseMatrix_saveHB.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix.cpp...
> Preprocessing /build/py
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)thon-escript-GiQz3M/python-escript-5.5/paso/src/SystemMatrix.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_copyRemoteCoupleBlock.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_copyRemoteCoupleBlock.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_debug.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_debug.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_extendedRows.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_extendedRows.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_loadMM.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_loadMM.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_MatrixVector.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_MatrixVector.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrix_mergeMainAndCouple.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrix_mergeMainAndCouple.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern_unrollBlocks.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/SystemMatrixPattern_unrollBlocks.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/TFQMR.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/TFQMR.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Transport.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Transport.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Transport.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Transport.h...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/Transport_solve.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/Transport_solve.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/UMFPACK.cpp...
> Parsing file /<<PKGBUILDDIR>>/paso/src/UMFPACK.cpp...
> Preprocessing /<<PKGBUILDDIR>>/paso/src/UMFPACK.h...
> Parsing file /<<PKGBUILDDIR>>/paso/src/UMFPACK.h...
> Preprocessing /<<PKGBUILDDIR>>/pythonMPI/src/ScriptMPI.cpp...
> Parsing file /<<PKGBUILDDIR>>/pythonMPI/src/ScriptMPI.cpp...
> Preprocessing /<<PKGBUILDDIR>>/pythonMPI/src/ScriptMPIredirect.cpp...
> Parsing file /<<PKGBUILDDIR>>/pythonMPI/src/ScriptMPIredirect.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/AbstractAssembler.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/AbstractAssembler.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/blocktools.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/blocktools.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/blocktools.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/blocktools.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/blocktools2.cpp...
> Parsing file /build/pyth
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)>] [87 </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/user/figures//lumping_valet_a_2.png
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)>]
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
>
> LaTeX Warning: Reference `eqn:Tform nabla' on page 39 undefined on input line 2
> 00.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 197--202
>
>
> LaTeX Warning: Reference `eqn:hdgenf2' on page 39 undefined on input line 205.
>
>
> LaTeX Warning: Reference `eqn:hdgenf2' on page 39 undefined on input line 206.
>
>
> LaTeX Warning: Reference `Sec:1DHDv0' on page 39 undefined on input line 213.
>
>
> LaTeX Warning: Reference `eq:hom flux' on page 39 undefined on input line 224.
>
>
> LaTeX Warning: Reference `NEUMAN 2' on page 39 undefined on input line 255.
>
>
> LaTeX Warning: Reference `NEUMAN 2b' on page 39 undefined on input line 258.
>
>
> LaTeX Warning: Reference `eq:inhom flux' on page 39 undefined on input line 258
> .
>
>
> LaTeX Warning: Reference `Sec:2DHD plot' on page 39 undefined on input line 266
> .
>
>
> LaTeX Warning: Reference `fig:steady state heat' on page 39 undefined on input
> line 269.
>
> [39
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))] [40pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.3}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.276 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/simpleheat.png> </build/pyth
> on-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumpin
> g_valet_u_1.png
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.styon-escript-GiQz3M/python-escript-5.5/ripley/src/blocktools2.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/Brick.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Brick.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/Brick.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Brick.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler2D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler2D.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler3D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/DefaultAssembler3D.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/domainhelpers.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/domainhelpers.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/domainhelpers.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/domainhelpers.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/LameAssembler2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/LameAssembler2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/LameAssembler2D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/LameAssembler2D.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/LameAssembler3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/LameAssembler3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/LameAssembler3D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/LameAssembler3D.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/MultiBrick.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/MultiBrick.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/MultiBrick.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/MultiBrick.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/MultiRectangle.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/MultiRectangle.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/MultiRectangle.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/MultiRectangle.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/Rectangle.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Rectangle.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/Rectangle.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Rectangle.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/Ripley.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Ripley.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/ripleycpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/ripleycpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/RipleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/RipleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/RipleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/Rip)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)>])
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example05.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
> Underfull \hbox (badness 10000) in paragraph at lines 18--25
>
>
> LaTeX Warning: Reference `example4' on page 41 undefined on input line 26.
>
>
> LaTeX Warning: Reference `fig:anticlinehrmodel' on page 41 undefined on input l
> ine 28.
>
> [41pdfTeX warning (ext4): destination with the same identifier (name{figure.4.4
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.74 l30=
> Line(p3, p0) </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/cookbook/figures/anticlineheatrefraction.png
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.styleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/RipleyException.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/RipleyException.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/RipleySystemMatrix.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/RipleySystemMatrix.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/system_dep.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/system_dep.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/WaveAssembler2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/WaveAssembler2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/WaveAssembler2D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/WaveAssembler2D.h...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/WaveAssembler3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/WaveAssembler3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/ripley/src/WaveAssembler3D.h...
> Parsing file /<<PKGBUILDDIR>>/ripley/src/WaveAssembler3D.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/AbstractAssembler.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/AbstractAssembler.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/AbstractAssembler.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/AbstractAssembler.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/Brick.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/Brick.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/Brick.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/Brick.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/BrickGradients.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/BrickGradients.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/BrickIntegrals.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/BrickIntegrals.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/BrickReductions.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/BrickReductions.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/CrossDomainCoupler.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/CrossDomainCoupler.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/CrossDomainCoupler.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/CrossDomainCoupler.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler2D.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler2D.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler3D.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/DefaultAssembler3D.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/domainhelpers.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/domainhelpers.cpp...
> Preprocessing /<<PKGBUILDDIR>>/
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def>]
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.styspeckley/src/domainhelpers.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/domainhelpers.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/lagrange_functions.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/lagrange_functions.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/Rectangle.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/Rectangle.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/Rectangle.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/Rectangle.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/RectangleGradients.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/RectangleGradients.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/RectangleIntegrals.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/RectangleIntegrals.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/RectangleReductions.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/RectangleReductions.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/Speckley.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/Speckley.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/speckleycpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/speckleycpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/SpeckleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/SpeckleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/SpeckleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/SpeckleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/SpeckleyException.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/SpeckleyException.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/system_dep.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/system_dep.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/WaveAssembler2D.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/WaveAssembler2D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/WaveAssembler2D.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/WaveAssembler2D.h...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/WaveAssembler3D.cpp...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/WaveAssembler3D.cpp...
> Preprocessing /<<PKGBUILDDIR>>/speckley/src/WaveAssembler3D.h...
> Parsing file /<<PKGBUILDDIR>>/speckley/src/WaveAssembler3D.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/DataVar.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/DataVar.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/DataVar.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/DataVar.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/DomainChunk.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/DomainChunk.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/ElementData.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/ElementData.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/EscriptDataset.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/EscriptDataset.cpp...
> Preprocessing /build/python-es
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)cript-GiQz3M/python-escript-5.5/weipa/src/EscriptDataset.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/EscriptDataset.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyElements.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyElements.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyElements.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyElements.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyNodes.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyNodes.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/FinleyNodes.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/FinleyNodes.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/NodeData.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/NodeData.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyElements.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyElements.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyElements.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyElements.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyNodes.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyNodes.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/RipleyNodes.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/RipleyNodes.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyDomain.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyDomain.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyDomain.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyDomain.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyElements.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyElements.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyElements.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyElements.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyNodes.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyNodes.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/SpeckleyNodes.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/SpeckleyNodes.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/VisItControl.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/VisItControl.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/VisItControl.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/VisItControl.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/VisItData.cpp...
> Parsing file /build/python-
>
> LaTeX Warning: Reference `FIG LUMPING SUPG INC A' on page 88 undefined on input
> line 170.
>
>
> LaTeX Warning: Reference `FIG LUMPING SUPG INC B' on page 88 undefined on input
> line 170.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 1' on page 88 undefined on input line 18
> 0.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 1' on page 88 undefined on input line 18
> 0.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 1' on page 88 undefined on input line 18
> 7.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 1' on page 88 undefined on input line 18
> 7.
>
>
> LaTeX Warning: Reference `FIG LUMPING SUPG A' on page 88 undefined on input lin
> e 191.
>
>
> LaTeX Warning: Reference `FIG LUMPING SUPG Ab' on page 88 undefined on input li
> ne 197.
>
>
> LaTeX Warning: Reference `FIG LUMPING SUPG B' on page 88 undefined on input lin
> e 204.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 21
> 2.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 21
> 2.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 21
> 9.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 21
> 9.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 22
> 6.
>
>
> LaTeX Warning: Reference `LUMPING SUPG 2' on page 88 undefined on input line 22
> 6.
>
> [88 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//lumping_SUPG_du_1.png
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty)/<<PKGBUILDDIR>>/escriptcore/src/ArrayOps.h:38: warning: the name 'LocalOps.h' supplied as the argument in the \file statement is not an input file
> /<<PKGBUILDDIR>>/escriptcore/src/system_dep.h:20: warning: the name 'escript/src/system_dep.h' supplied as the argument in the \file statement is not an input file
> )
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/elist.tex (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )) (/usr/share/texlive/texmf-dist/tex/latex/program/program.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/ueur.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/defs.tex)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/verinfo.tex)
> Writing index file inversion.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.aux> </<<BUILDDIR>>/python-escript-5
> .5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_du_2.png
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.aux))
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd/<<PKGBUILDDIR>>/escriptcore/src/Data.cpp:4698: warning: no matching class member found for
> DataTypes::CplxVectorType::reference Data::getDataAtOffsetRW(DataTypes::RealVectorType::size_type i, std::complex< real_t > dummy)
> Possible candidates:
> 'DataTypes::RealVectorType::reference escript::Data::getDataAtOffsetRW(DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy)'
> 'DataTypes::CplxVectorType::reference escript::Data::getDataAtOffsetRW(DataTypes::CplxVectorType::size_type i, DataTypes::cplx_t dummy)'
>
> /<<PKGBUILDDIR>>/escriptcore/src/Data.cpp:4706: warning: no matching class member found for
> DataTypes::CplxVectorType::const_reference Data::getDataAtOffsetRO(DataTypes::RealVectorType::size_type i, std::complex< real_t > dummy)
> Possible candidates:
> 'DataTypes::RealVectorType::const_reference escript::Data::getDataAtOffsetRO(DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy)'
> 'DataTypes::CplxVectorType::const_reference escript::Data::getDataAtOffsetRO(DataTypes::CplxVectorType::size_type i, DataTypes::cplx_t dummy)'
>
> )/<<PKGBUILDDIR>>/escriptcore/src/Data.cpp:5668: warning: documented symbol 'Data escript::condEvalWorker' was not declared or defined.
> /<<PKGBUILDDIR>>/escriptcore/src/Data.h:1971: warning: no uniquely matching class member found for
> DataTypes::cplx_t * escript::Data::getSampleDataRW(DataTypes::CplxVectorType::size_type sampleNo, DataTypes::cplx_t dummy)
> Possible candidates:
> 'DataTypes::real_t * escript::Data::getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)' at line 625 of file /<<PKGBUILDDIR>>/escriptcore/src/Data.h
> 'DataTypes::cplx_t * escript::Data::getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::cplx_t dummy)' at line 628 of file /<<PKGBUILDDIR>>/escriptcore/src/Data.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/Data.h:2003: warning: no uniquely matching class member found for
> const DataTypes::cplx_t * escript::Data::getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, std::complex< real_t > dummy) const
> Possible candidates:
> 'const DataTypes::real_t * escript::Data::getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const' at line 611 of file /<<PKGBUILDDIR>>/escriptcore/src/Data.h
> 'const DataTypes::cplx_t * escript::Data::getSampleDataRO(DataTypes::CplxVectorType::size_type sampleNo, DataTypes::cplx_t dummy) const' at line 614 of file /<<PKGBUILDDIR>>/escriptcore/src/Data.h
>
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map}]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/docguide.tex [2/<<PKGBUILDDIR>>/escriptcore/src/DataTagged.cpp:1029: warning: no matching class member found for
> DataTypes::CplxVectorType::const_reference escript::DataTagged::getDataByTagRO(int tag, DataTypes::RealVectorType::size_type i, std::complex< real_t > dummy) const
> Possible candidates:
> 'DataTypes::RealVectorType::const_reference escript::DataTagged::getDataByTagRO(int tag, DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy=0) const'
> 'DataTypes::CplxVectorType::const_reference escript::DataTagged::getDataByTagRO(int tag, DataTypes::CplxVectorType::size_type i, DataTypes::cplx_t dummy) const'
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.cpp:1040: warning: no matching class member found for
> DataTypes::CplxVectorType::reference escript::DataTagged::getDataByTagRW(int tag, DataTypes::RealVectorType::size_type i, std::complex< real_t > dummy)
> Possible candidates:
> 'DataTypes::RealVectorType::reference escript::DataTagged::getDataByTagRW(int tag, DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy=0)'
> 'DataTypes::CplxVectorType::reference escript::DataTagged::getDataByTagRW(int tag, DataTypes::CplxVectorType::size_type i, DataTypes::cplx_t dummy)'
>
> ]/<<PKGBUILDDIR>>/escriptcore/src/DataTagged.h:745: warning: no matching class member found for
> DataTypes::CplxVectorType::reference escript::DataTagged::getDefaultValueRW(DataTypes::RealVectorType::size_type i, std::complex< real_t > dummy)
> Possible candidates:
> 'DataTypes::RealVectorType::reference escript::DataTagged::getDefaultValueRW(DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy=0)'
> 'DataTypes::CplxVectorType::reference escript::DataTagged::getDefaultValueRW(DataTypes::CplxVectorType::size_type i, DataTypes::cplx_t dummy)'
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:56: warning: no matching file member found for
> void escript::DataTypes::pointToStream(std::ostream &os, const CplxVectorType::ElementType *data, const ShapeType &shape, int offset, bool needsep, const std::string &sep)
> Possible candidates:
> 'void pointToStream(std::ostream &os, const RealVectorType::ElementType *data, const ShapeType &shape, int offset, bool needsep=true, const std::string &sep=",")' at line 63 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:131: warning: no matching file member found for
> void escript::DataTypes::pointToStream(std::ostream &os, const RealVectorType::ElementType *data, const ShapeType &shape, int offset, bool needsep, const std::string &sep)
> Possible candidates:
> 'void pointToStream(std::ostream &os, const RealVectorType::ElementType *data, const ShapeType &shape, int offset, bool needsep=true, const std::string &sep=",")' at line 63 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:421: warning: no matching file member found for
> std::string escript::DataTypes::pointToString(const escript::DataTypes::DataVectorAlt< cplx_t > &data, const ShapeType &shape, int offset, const std::string &prefix)
> Possible candidates:
> 'std::string pointToString(const RealVectorType &data, const ShapeType &shape, int offset, const std::string &prefix)' at line 122 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:492: warning: no matching file member found for
> std::string escript::DataTypes::pointToString(const escript::DataTypes::DataVectorAlt< real_t > &data, const ShapeType &shape, int offset, const std::string &prefix)
> Possible candidates:
> 'std::string pointToString(const RealVectorType &data, const ShapeType &shape, int offset, const std::string &prefix)' at line 122 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:558: warning: no matching file member found for
> void escript::DataTypes::copyPoint(escript::DataTypes::DataVectorAlt< real_t > &dest, RealVectorType::size_type doffset, RealVectorType::size_type nvals, const RealVectorType &src, RealVectorType::size_type soffset)
> Possible candidates:
> 'void copyPoint(RealVectorType &dest, vec_size_type doffset, vec_size_type nvals, const RealVectorType &src, vec_size_type soffset)' at line 137 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:569: warning: no matching file member found for
> void escript::DataTypes::copyPoint(escript::DataTypes::DataVectorAlt< cplx_t > &dest, CplxVectorType::size_type doffset, CplxVectorType::size_type nvals, const CplxVectorType &src, CplxVectorType::size_type soffset)
> Possible candidates:
> 'void copyPoint(RealVectorType &dest, vec_size_type doffset, vec_size_type nvals, const RealVectorType &src, vec_size_type soffset)' at line 137 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVector.cpp:585: warning: no matching file member found for
> void escript::DataTypes::fillComplexFromReal(const escript::DataTypes::DataVectorAlt< real_t > &r, CplxVectorType &c)
> Possible candidates:
> 'void fillComplexFromReal(const RealVectorType &r, CplxVectorType &c)' at line 155 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVector.h
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVectorAlt.h:265: warning: no matching class member found for
> template < T >
> escript::DataTypes::DataVectorAlt< T >::DataVectorAlt(escript::DataTypes::DataVectorAlt< T >::long size, const DataVectorAlt< T >::value_type val, const DataVectorAlt< T >::size_type blockSize)
> Possible candidates:
> 'escript::DataTypes::DataVectorAlt< T >::DataVectorAlt()'
> 'escript::DataTypes::DataVectorAlt< T >::DataVectorAlt(const DataVectorAlt< T > &other)'
> 'escript::DataTypes::DataVectorAlt< T >::DataVectorAlt(const size_type size, const value_type val=0.0, const size_type blockSize=1)'
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h:201: warning: no matching file member found for
> void escript::hermitian(const &in, const std::vector< int > &inShape, long inOffset, &ev, const std::vector< int > &evShape, long evOffset)
> Possible candidates:
> 'void hermitian(const DataTypes::CplxVectorType &in, const DataTypes::ShapeType &inShape, DataTypes::CplxVectorType::size_type inOffset, DataTypes::CplxVectorType &ev, const DataTypes::ShapeType &evShape, DataTypes::CplxVectorType::size_type evOffset)' at line 916 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.cpp
>
> /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h:220: warning: no matching file member found for
> void escript::antihermitian(const &in, const std::vector< int > &inShape, long inOffset, &ev, const std::vector< int > &evShape, long evOffset)
> Possible candidates:
> 'void antihermitian(const DataTypes::CplxVectorType &in, const DataTypes::ShapeType &inShape, typename DataTypes::CplxVectorType::size_type inOffset, DataTypes::CplxVectorType &ev, const DataTypes::ShapeType &evShape, typename DataTypes::CplxVectorType::size_type evOffset)' at line 963 of file /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.cpp
>
> ) [3] [4]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.toc [5]>]))) [6/<<PKGBUILDDIR>>/dudley/src/DudleyDomain.cpp:1297: warning: no uniquely matching class member found for
> void dudley::DudleyDomain::setToIntegrals(std::vector< real_t > &integrals, const escript::Data &arg) const
> Possible candidates:
> 'virtual void dudley::DudleyDomain::setToIntegrals(std::vector< escript::DataTypes::real_t > &integrals, const escript::Data &arg) const' at line 514 of file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h
> 'virtual void dudley::DudleyDomain::setToIntegrals(std::vector< escript::DataTypes::cplx_t > &integrals, const escript::Data &arg) const' at line 516 of file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h
>
> /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.cpp:1303: warning: no uniquely matching class member found for
> void dudley::DudleyDomain::setToIntegrals(std::vector< cplx_t > &integrals, const escript::Data &arg) const
> Possible candidates:
> 'virtual void dudley::DudleyDomain::setToIntegrals(std::vector< escript::DataTypes::real_t > &integrals, const escript::Data &arg) const' at line 514 of file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h
> 'virtual void dudley::DudleyDomain::setToIntegrals(std::vector< escript::DataTypes::cplx_t > &integrals, const escript::Data &arg) const' at line 516 of file /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h
>
> [89 </build/py
> thon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lump
> ing_SUPG_u_1.png]/<<PKGBUILDDIR>>/dudley/src/NodeFile_createDenseLabelings.cpp:139: warning: no matching class member found for
> dim_t dudley::NodeFile::createDenseNodeLabeling(std::vector< index_t > &nodeDistribution, const std::vector< index_t > &dofDistribution)
> Possible candidates:
> 'dim_t dudley::NodeFile::createDenseNodeLabeling(IndexVector &nodeDistribution, const IndexVector &dofDistribution)'
> 'dim_t finley::NodeFile::createDenseNodeLabeling(IndexVector &nodeDistribution, const IndexVector &dofDistribution)'
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.tex
>
> LaTeX Warning: Citation `ESCRIPT' on page 7 undefined on input line 26.
>
>
> LaTeX Warning: Citation `ESCRIPTCOOKBOOK' on page 7 undefined on input line 27.
>
>
> )/<<PKGBUILDDIR>>/finley/src/ElementFile.cpp:205: warning: no matching class member found for
> void finley::ElementFile::relabelNodes(const std::vector< index_t > &newNode, index_t offset)
> Possible candidates:
> 'void dudley::ElementFile::relabelNodes(const index_t *newNode, index_t offset)'
> 'void finley::ElementFile::relabelNodes(const IndexVector &newNode, index_t offset)'
>
> [7]/<<PKGBUILDDIR>>/finley/src/FinleyDomain.cpp:1699: warning: no uniquely matching class member found for
> void finley::FinleyDomain::setToIntegrals(std::vector< real_t > &integrals, const escript::Data &arg) const
> Possible candidates:
> 'virtual void finley::FinleyDomain::setToIntegrals(std::vector< escript::DataTypes::real_t > &integrals, const escript::Data &arg) const' at line 635 of file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h
> 'virtual void finley::FinleyDomain::setToIntegrals(std::vector< escript::DataTypes::cplx_t > &integrals, const escript::Data &arg) const' at line 637 of file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h
>
> /<<PKGBUILDDIR>>/finley/src/FinleyDomain.cpp:1705: warning: no uniquely matching class member found for
> void finley::FinleyDomain::setToIntegrals(std::vector< cplx_t > &integrals, const escript::Data &arg) const
> Possible candidates:
> 'virtual void finley::FinleyDomain::setToIntegrals(std::vector< escript::DataTypes::real_t > &integrals, const escript::Data &arg) const' at line 635 of file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h
> 'virtual void finley::FinleyDomain::setToIntegrals(std::vector< escript::DataTypes::cplx_t > &integrals, const escript::Data &arg) const' at line 637 of file /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h
>
> [8] [9] [10]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.tex/<<PKGBUILDDIR>>/paso/src/Options.cpp:32: warning: no matching class member found for
> paso::Options::Options(const bp::object &options)
> Possible candidates:
> 'paso::Options::Options()'
> 'paso::Options::Options(const boost::python::object &options)'
>
> /<<PKGBUILDDIR>>/ripley/src/Brick.cpp:3684: warning: no uniquely matching class member found for
> escript::Data ripley::Brick::randomFill(const std::vector< int > &shape, const escript::FunctionSpace &what, long seed, const bp::tuple &filter) const
> Possible candidates:
> 'virtual escript::Data ripley::Brick::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 188 of file /<<PKGBUILDDIR>>/ripley/src/Brick.h
> 'virtual escript::Data speckley::Brick::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 191 of file /<<PKGBUILDDIR>>/speckley/src/Brick.h
>
> /<<PKGBUILDDIR>>/ripley/src/Brick.cpp:3737: warning: no uniquely matching class member found for
> escript::Data ripley::Brick::randomFillWorker(const std::vector< int > &shape, long seed, const bp::tuple &filter) const
> Possible candidates:
> 'virtual escript::Data ripley::Brick::randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const' at line 274 of file /<<PKGBUILDDIR>>/ripley/src/Brick.h
> 'escript::Data speckley::Brick::randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const' at line 337 of file /<<PKGBUILDDIR>>/speckley/src/Brick.h
>
>
> Chapter 1.
>
> Underfull \hbox (badness 10000) in paragraph at lines 54--54
> []\OT1/ptm/m/n/10 Figure 1.1: Grav-ity Anomaly Data in $\OML/cmm/m/it/10 mgal$
> \OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
>
> Underfull \hbox (badness 10000) in paragraph at lines 65--65
> []\OT1/ptm/m/n/10 Figure 1.2: 3-D con-tour plot of the den-sity dis-tri-bu-tion
> ob-tained by in-ver-sion of file
>
> LaTeX Warning: Citation `ESCRIPTCOOKBOOK' on page 11 undefined on input line 76
> .
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 11 undefined on input line 77.
>
> [11/<<PKGBUILDDIR>>/ripley/src/Rectangle.cpp:2532: warning: no uniquely matching class member found for
> escript::Data ripley::Rectangle::randomFill(const std::vector< int > &shape, const escript::FunctionSpace &what, long seed, const bp::tuple &filter) const
> Possible candidates:
> 'virtual escript::Data ripley::Rectangle::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 191 of file /<<PKGBUILDDIR>>/ripley/src/Rectangle.h
> 'virtual escript::Data speckley::Rectangle::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 192 of file /<<PKGBUILDDIR>>/speckley/src/Rectangle.h
>
> ] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)/<<PKGBUILDDIR>>/speckley/src/Rectangle.cpp:1258: warning: no uniquely matching class member found for
> escript::Data speckley::Rectangle::randomFill(const std::vector< int > &shape, const escript::FunctionSpace &fs, long seed, const bp::tuple &filter) const
> Possible candidates:
> 'virtual escript::Data ripley::Rectangle::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 191 of file /<<PKGBUILDDIR>>/ripley/src/Rectangle.h
> 'virtual escript::Data speckley::Rectangle::randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const' at line 192 of file /<<PKGBUILDDIR>>/speckley/src/Rectangle.h
>
> > </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//lumping_SUPG_u_1b.png [12 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figu
> res//QLDWestGravityDataPlot.png>] [90 </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_u_2.png>] [13 </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravContourMu10.png (PNG co
> py)>]
>
> LaTeX Warning: Citation `ESCRIPT' on page 14 undefined on input line 138.
>
> [14] [15 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//dom2D.pdf> </<<PKGBUILDDIR>>
> /debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf
>
> pdfTeX warning: pdflatex (file /<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf): PDF inclusion: multiple
> pdfs with page group included in a single page
> >]
>
> LaTeX Warning: Citation `ESCRIPT' on page 16 undefined on input line 278.
>
>
> LaTeX Warning: Citation `ESCRIPTONLINE' on page 16 undefined on input line 278.
>
>
>
> LaTeX Warning: Citation `Telford1990a' on page 16 undefined on input line 282.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
>
> LaTeX Warning: Citation `Telford1990a' on page 16 undefined on input line 290.
>
> [16]
>
> LaTeX Warning: Citation `ERMAPPER' on page 17 undefined on input line 327.
>
>
> LaTeX Warning: Citation `NETCDF' on page 17 undefined on input line 327.
>
>
> LaTeX Warning: Citation `NETCDF' on page 17 undefined on input line 336.
>
> [17] [18]>
> ]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.texescript-GiQz3M/python-escript-5.5/weipa/src/VisItData.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/VisItData.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/VisItData.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/vtkCellType.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/vtkCellType.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/weipa.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/weipa.h...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/weipacpp.cpp...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/weipacpp.cpp...
> Preprocessing /<<PKGBUILDDIR>>/weipa/src/WeipaException.h...
> Parsing file /<<PKGBUILDDIR>>/weipa/src/WeipaException.h...
> Building macro definition list...
> Building group list...
> Building directory list...
> Building namespace list...
> Building file list...
> Building class list...
> Computing nesting relations for classes...
> Associating documentation with classes...
> Building example list...
> Searching for enumerations...
> Searching for documented typedefs...
> Searching for members imported via using declarations...
> Searching for included using directives...
> Searching for documented variables...
> Building interface member list...
> Building member list...
> Searching for friends...
> Searching for documented defines...
> Computing class inheritance relations...
> Computing class usage relations...
> Flushing cached template relations that have become invalid...
> Computing class relations...
> Add enum values to enums...
> Searching for member function documentation...
> Creating members for template instances...
> Building page list...
> Search for main page...
> Computing page relations...
> Determining the scope of groups...
> Sorting lists...
> Determining which enums are documented
> Computing member relations...
> Building full member lists recursively...
> Adding members to member groups.
> Computing member references...
> Inheriting documentation...
> Generating disk names...
> Adding source references...
> Adding xrefitems...
> Sorting member lists...
> Setting anonymous enum type...
> Computing dependencies between directories...
> Generating citations page...
> Counting members...
> Counting data structures...
> Resolving user defined references...
> Finding anchors and sections in the documentation...
> Transferring function references...
> Combining using relations...
> Adding members to index pages...
> Correcting members for VHDL...
> Generating style sheet...
> Generating search indices...
> Generating example documentation...
> Generating file sources...
> Parsing code for file AbstractAssembler.cpp...
> Generating code for file AbstractAssembler.h...
> Generating code for file AbstractAssembler.h...
> Parsing code for file AbstractContinuousDomain.cpp...
> Generating code for file AbstractContinuousDomain.h...
> Parsing code for file AbstractDomain.cpp...
> Generating code for file AbstractDomain.h...
> Parsing code for file AbstractReducer.cpp...
> Generating code for file AbstractReducer.h...
> Parsing code for file AbstractSystemMatrix.cpp...
> Generating code for file AbstractSystemMatrix.h...
> Parsing code for file AbstractTransportProblem.cpp...
> Generating code for file AbstractTransportProblem.h...
> Parsing code for file ArrayOps.cpp...
> Generating code for file ArrayOps.h...
> Generating code for file Assemble.h...
> Generating code for file Assemble.h...
> Parsing code for file Assemble_addToSystemMatrix.cpp...
> Parsing code for file Assemble_addToSystemMatrix.cpp...
> Parsing code for file Assemble_AverageElementData.cpp...
> Parsing code for file Assemble_AverageElementData.cpp...
> Parsing code for file Assemble_CopyElementData.cpp...
> Parsing code for file Assemble_CopyElementData.cpp...
> Parsing code for file Assemble_CopyNodalData.cpp...
> Parsing code for file Assemble_CopyNodalData.cpp...
> Parsing code for file Assemble_getAssembleParameters.cpp...
> Parsing code for file Assemble_getAssembleParameters.cpp...
> Parsing code f
> Chapter 5.
>
> LaTeX Warning: Citation `GMSH' on page 91 undefined on input line 24.
>
> [91]
>
> LaTeX Warning: Citation `VISIT' on page 19 undefined on input line 504.
>
>
> LaTeX Warning: Citation `mayavi' on page 19 undefined on input line 504.
>
>
> LaTeX Warning: Citation `SILO' on page 19 undefined on input line 516.
>
>
> LaTeX Warning: Citation `VISIT' on page 19 undefined on input line 517.
>
>
> LaTeX Warning: Citation `GOCAD' on page 19 undefined on input line 529.
>
>
> LaTeX Warning: Citation `ESCRIPT' on page 19 undefined on input line 631.
>
> [19] [20 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//QLDGravContourMu01.png (PNG copy)> </build/python-escript-G
> iQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravContou
> rMu1.png (PNG copy)> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/inversion/figures//QLDGravContourMu100.png (PNG copy)> </build/pyt
> hon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//
> QLDGravContourMu1000.png (PNG copy)>] [21 </<<BUILDDIR>>/python-
> escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthMu01.png (PNG
> copy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/i
> nversion/figures//QLDGravDepthMu1.png (PNG copy)> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthMu10.p
> ng (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/inversion/figures//QLDGravDepthMu100.png (PNG copy)> </build/python-escr
> ipt-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravD
> epthMu1000.png (PNG copy)>] [22 </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/inversion/figures//onshore-offshore.png
>
> LaTeX Warning: Citation `GMSH' on page 92 undefined on input line 89.
>
>
> LaTeX Warning: Reference `ESCRIPT CHAP' on page 92 undefined on input line 125.
>
>
>
> LaTeX Warning: Citation `GMSH' on page 92 undefined on input line 133.
>
>
> LaTeX Warning: Reference `fig:PYCAD 0' on page 92 undefined on input line 140.
>
>
> LaTeX Warning: Citation `GMSH' on page 92 undefined on input line 145.
>
>
> LaTeX Warning: Reference `chap:finley' on page 92 undefined on input line 145.
>
>
> LaTeX Warning: Citation `GMSH' on page 92 undefined on input line 154.
>
>
> LaTeX Warning: Reference `fig:PYCAD 1' on page 92 undefined on input line 158.
>
> [92] [93 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /user/figures//quad.pdf>]
>
> LaTeX Warning: Reference `fig:PYCAD 2' on page 94 undefined on input line 219.
>
>
> LaTeX Warning: Reference `fig:PYCAD 2' on page 94 undefined on input line 251.
>
> [94 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//trapezoid.pdf>] [95 </<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/user/figures//brick.pdf>]>]) [23]
>
> LaTeX Warning: Reference `fig:PYCAD 5' on page 96 undefined on input line 339.
>
>
> LaTeX Warning: Reference `fig:PYCAD 5' on page 96 undefined on input line 358.
>
> [96 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//refine.pdf>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.tex [24] [97] [98]
>
> LaTeX Warning: Citation `GMSH' on page 99 undefined on input line 579.
>
>
> LaTeX Warning: Citation `RIGHTHANDRULE' on page 99 undefined on input line 600.
>
>
> [99]
>
> LaTeX Warning: Citation `GMSH' on page 100 undefined on input line 682.
>
> [100]
> Chapter 2.
>
> Underfull \hbox (badness 10000) in paragraph at lines 7--7
> []\OT1/ptm/m/n/10 Figure 2.1: Mag-netic anomaly data in $\OML/cmm/m/it/10 nT$ \
> OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
> [25] [26 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//QLDWestMagneticDataPlot.png
>
> LaTeX Warning: Citation `GMSH' on page 101 undefined on input line 698.
>
>
> LaTeX Warning: Citation `IDEAS' on page 101 undefined on input line 702.
>
>
> LaTeX Warning: Citation `VRML' on page 101 undefined on input line 706.
>
>
> LaTeX Warning: Citation `STL' on page 101 undefined on input line 710.
>
>
> LaTeX Warning: Citation `NASTRAN' on page 101 undefined on input line 714.
>
>
> LaTeX Warning: Citation `MEDIT' on page 101 undefined on input line 718.
>
>
> LaTeX Warning: Citation `CGNS' on page 101 undefined on input line 722.
>
>
> LaTeX Warning: Citation `PLOT3D' on page 101 undefined on input line 726.
>
>
> LaTeX Warning: Citation `DIFFPACK' on page 101 undefined on input line 730.
>
>
> LaTeX Warning: Citation `GMSH' on page 101 undefined on input line 734.
>
>
> LaTeX Warning: Citation `TETGEN' on page 101 undefined on input line 734.
>
>
> LaTeX Warning: Citation `GMSH' on page 101 undefined on input line 738.
>
>
> LaTeX Warning: Citation `NETGEN' on page 101 undefined on input line 742.
>
> [101] [102]) [103]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.tex [104]
> Chapter 6.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kessolver.tex
>
> LaTeX Warning: Reference `Stokes 1' on page 105 undefined on input line 50.
>
>
> LaTeX Warning: Reference `Stokes 2' on page 105 undefined on input line 50.
>
>
> LaTeX Warning: Citation `AAMIRBERKYAN2008' on page 105 undefined on input line
> 69.
>
>
> LaTeX Warning: Citation `MBENZI2005' on page 105 undefined on input line 69.
>
>
> LaTeX Warning: Reference `STOKES' on page 105 undefined on input line 73.
>
>
> LaTeX Warning: Reference `STOKES' on page 105 undefined on input line 88.
>
> [105]
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 95.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 106 undefined on input li
> ne 98.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 98.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 113.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 106 undefined on input li
> ne 117.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 118.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 106 undefined on input li
> ne 121.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 106 undefined on input li
> ne 125.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 139.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 143.
>
>
> LaTeX Warning: Citation `ELMAN' on page 106 undefined on input line 148.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 160.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 106 undefined on input li
> ne 169.
>
> [106]
>
> LaTeX Warning: Reference `STOKES total V1' on page 107 undefined on input line
> 187.
>
>
> LaTeX Warning: Reference `STOKES total P2' on page 107 undefined on input line
> 187.
>
>
> LaTeX Warning: Reference `STOKES total V2' on page 107 undefined on input line
> 187.
>
>
> LaTeX Warning: Reference `STOKES STOPPING CRITERIA' on page 107 undefined on in
> put line 221.
>
>
> LaTeX Warning: Reference `STOKES TOL1' on page 107 undefined on input line 256.
>
>
>
> LaTeX Warning: Reference `STOKES TOL2' on page 107 undefined on input line 257.
>
>
>
> LaTeX Warning: Reference `STOKES EST 1' on page 107 undefined on input line 264
> .
>
>
> LaTeX Warning: Reference `STOKES EST 2' on page 107 undefined on input line 264
> .
>
> [107]
>
> LaTeX Warning: Reference `STOKES TOL1' on page 108 undefined on input line 305.
>
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 108 undefined on input li
> ne 306.
>
>
> LaTeX Warning: Reference `STOKES LARGE BV1' on page 108 undefined on input line
> 308.
>
>
> LaTeX Warning: Reference `STOKES TOL2' on page 108 undefined on input line 310.
>
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 2' on page 108 undefined on input li
> ne 311.
>
>
> LaTeX Warning: Reference `STOKES STOPPING CRITERIA' on page 108 undefined on in
> put line 319.
>
> [108]
>
> LaTeX Warning: Citation `LBB' on page 109 undefined on input line 334.
>
>
> LaTeX Warning: Reference `STOKES ITER STEP 1' on page 109 undefined on input li
> ne 398.
>
>
> LaTeX Warning: Reference `STOKES P OPERATOR' on page 109 undefined on input lin
> e 398.
>
>
> LaTeX Warning: Reference `STOKES P PREC' on page 109 undefined on input line 40
> 2.
>
> [109])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dar
> cyflux.tex
>
> LaTeX Warning: Reference `DARCY PROBLEM' on page 110 undefined on input line 48
> .
>
>
> LaTeX Warning: Reference `DARCY PROBLEM' on page 110 undefined on input line 49
> .
>
> [110]
>
> LaTeX Warning: Reference `DARCY PROBLEM' on page 111 undefined on input line 51
> .
>
>
> LaTeX Warning: Reference `DARCY PROBLEM SIMPLE FLUX' on page 111 undefined on i
> nput line 73.
>
>
> LaTeX Warning: Reference `DARCY PROBLEM POST FLUX A' on page 111 undefined on i
> nput line 105.
>
>
> LaTeX Warning: Reference `SEC DARCY SIMPLE' on page 111 undefined on input line
> 109.
>
>
> LaTeX Warning: Reference `SEC DARCY POST' on page 111 undefined on input line 1
> 13.
>
>
> LaTeX Warning: Reference `SEC DARCY POST' on page 111 undefined on input line 1
> 17.
>
>
> LaTeX Warning: Reference `DARCY PROBLEM' on page 111 undefined on input line 12
> 6.
>
> [111]> </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagContourMu01.p
> ng (PNG copy)>] [112 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//darcy_result.png (PNG copy)>])
>
> LaTeX Warning: Citation `Muhlhaus2005' on page 113 undefined on input line 28.
>
>
> LaTeX Warning: Citation `Muhlhaus2005' on page 113 undefined on input line 55.
>
>
> LaTeX Warning: Reference `IKM-EQU-5' on page 113 undefined on input line 57.
>
>
> LaTeX Warning: Reference `IKM-EQU-4' on page 113 undefined on input line 57.
>
>
> LaTeX Warning: Reference `IKM-EQU-2' on page 113 undefined on input line 61.
>
> [113]
>
> LaTeX Warning: Reference `IKM-EQU-3' on page 114 undefined on input line 91.
>
>
> LaTeX Warning: Reference `IKM-EQU-8c' on page 114 undefined on input line 120.
>
>
> LaTeX Warning: Reference `IKM-EQU-2b' on page 114 undefined on input line 121.
>
>
> LaTeX Warning: Reference `IKM-EQU-10' on page 114 undefined on input line 126.
>
>
> LaTeX Warning: Reference `IKM-EQU-1' on page 114 undefined on input line 126.
>
>
> LaTeX Warning: Reference `IKM-EQU-2' on page 114 undefined on input line 132.
>
>
> LaTeX Warning: Reference `STOKES SOLVE' on page 114 undefined on input line 133
> .
>
>
> LaTeX Warning: Reference `IKM-EQU-44' on page 114 undefined on input line 157.
>
>
> LaTeX Warning: Reference `IKM-EQU-45' on page 114 undefined on input line 158.
>
> [114]
>
> LaTeX Warning: Citation `LBB' on page 115 undefined on input line 206.
>
> [115]
>
> LaTeX Warning: Reference `IKM-EQU-8c' on page 116 undefined on input line 279.
>
>
> LaTeX Warning: Reference `IKM-EQU-5b' on page 116 undefined on input line 290.
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fau
> ltsystem.tex
>
> LaTeX Warning: Reference `FAULTSYSTEM2D' on page 116 undefined on input line 39
> .
>
> [116 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/use
> r/figures//FaultSystem2D.pdf>]
>
> LaTeX Warning: Citation `IGRF' on page 27 undefined on input line 96.
>
>
> LaTeX Warning: Citation `AGRF' on page 27 undefined on input line 97.
>
> )
>
> LaTeX Warning: Reference `FAULTSYSTEM2D' on page 117 undefined on input line 12
> 0.
>
>
> LaTeX Warning: Reference `eq:2D line 1' on page 117 undefined on input line 144
> .
>
> [117 [27]] [28 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/inversion/figures//QLDMagContourMu0001.png (PNG copy)> </build/python-escrip
> t-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagCont
> ourMu001.png (PNG copy)> </<<PKGBUILDDIR>>/debia
> n/tmp3/posix/doc/inversion/figures//QLDMagContourMu1.png (PNG copy)> </build/py
> thon-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures/
> /QLDMagContourMu10.png (PNG copy)>] [29 </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu0001.png (PNG c
> opy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/in
> version/figures//QLDMagDepthMu001.png (PNG copy)> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu01.pn
> g (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/posi
> x/doc/inversion/figures//QLDMagDepthMu1.png (PNG copy)
>
> LaTeX Warning: Reference `eq:2D line 3' on page 118 undefined on input line 169
> .
>
> [118> </build/python-escript-
> GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthM
> u10.png (PNG copy)>]]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.tex [30]
> Chapter 3.
> ) [31]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.tex [32]
>
> LaTeX Warning: Reference `eq:2D line 3' on page 119 undefined on input line 307
> .
>
>
> LaTeX Warning: Reference `eq:2D line 4d' on page 119 undefined on input line 30
> 7.
>
> [119]
>
> LaTeX Warning: Reference `eq:2D line 3' on page 120 undefined on input line 325
> .
>
>
> LaTeX Warning: Reference `eq:2D line 4d' on page 120 undefined on input line 32
> 5.
>
>
> LaTeX Warning: Reference `Slip CHAP' on page 120 undefined on input line 383.
>
> )) [120]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.tex
> Chapter 4.
>
> LaTeX Warning: Citation `LOKE2014' on page 33 undefined on input line 30.
>
> [33]
> Chapter 7.
>
> LaTeX Warning: Reference `sec:dudley' on page 121 undefined on input line 29.
>
>
> LaTeX Warning: Reference `FINLEY FIG 0' on page 121 undefined on input line 58.
>
>
>
> LaTeX Warning: Reference `FINLEY FIG 0' on page 121 undefined on input line 65.
>
>
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 121 undefined on input line 74
> .
>
>
> LaTeX Warning: Reference `FINLEY FIG 0' on page 121 undefined on input line 89.
>
>
>
> LaTeX Warning: Reference `FINLEY FIG 0' on page 121 undefined on input line 98.
>
>
>
> LaTeX Warning: Reference `FINLEY FIG 0' on page 121 undefined on input line 109
> .
>
> [121] [34 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//HalfSphere.png
>
> LaTeX Warning: Reference `FINLEY FIG 01' on page 122 undefined on input line 13
> 6.
>
>
> LaTeX Warning: Reference `FINLEY TAB 1' on page 122 undefined on input line 152
> .
>
>
> LaTeX Warning: Reference `FINLEY.FIG:1' on page 122 undefined on input line 154
> .
>
>
> LaTeX Warning: Reference `FINLEY.FIG:2' on page 122 undefined on input line 154
> .
>
>
> LaTeX Warning: Reference `FINLEY.FIG:4' on page 122 undefined on input line 154
> .
>
>
> Underfull \vbox (badness 1226) has occurred while \output is active [122 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMesh.pdf>] [123 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//FinleyContact.pdf>] [124]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> leyelements.tex) [125] [126]
>
> LaTeX Warning: Reference `FINLEY MACRO TRI' on page 127 undefined on input line
> 328.
>
>
> LaTeX Warning: Reference `FINLEY MACRO REC' on page 127 undefined on input line
> 328.
>
>
> LaTeX Warning: Reference `STOKES PROBLEM' on page 127 undefined on input line 3
> 42.
>
>
> LaTeX Warning: Reference `FINLEY MESHES' on page 127 undefined on input line 34
> 3.
>
>
> LaTeX Warning: Reference `TRILINOS' on page 127 undefined on input line 346.
>
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 1' on page 127 undefined on
> input line 347.
>
>
> Underfull \hbox (badness 1910) in paragraph at lines 383--383
> []\OT1/ptm/m/n/10 Table 7.2: Solvers avail-able for [] and the \OT1/pcr/m/n/10
> PASO [][]\OT1/ptm/m/n/10 pack-age and the rel-e-vant op-tions in
>
> Underfull \vbox (badness 1337) has occurred while \output is active [127 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMacroLeg.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//FinleyMacroTri.pdf> </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//FinleyMacroRec.pdf>]
>
> LaTeX Warning: Citation `GMSH' on page 128 undefined on input line 444.
>
>
> LaTeX Warning: Citation `GMSH' on page 128 undefined on input line 456.
>
> [128]) [129]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.tex [130]
> Chapter 8.
>
> LaTeX Warning: Reference `fig:ripleyrect' on page 131 undefined on input line 9
> 2.
>
>
> LaTeX Warning: Reference `sec:ripleyfuncs' on page 131 undefined on input line
> 96.
>
> [131]>]) [35] [36] [132 [37] </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//RipleyMesh.pdf [38>]]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.tex
>
> LaTeX Warning: Reference `fig:ripleyrect' on page 133 undefined on input line 1
> 57.
>
> ) [133]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.tex [134]
> Chapter 5.
>
> LaTeX Warning: Citation `ESCRIPT' on page 39 undefined on input line 54.
>
> [39]
>
> LaTeX Warning: Citation `ESCRIPT' on page 40 undefined on input line 79.
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Drivers.tex [40 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/inversion/figures//classdep.pdf>]
>
> LaTeX Warning: Citation `Nocedal1980' on page 41 undefined on input line 71.
>
> [41]
>
> LaTeX Warning: Citation `Nocedal1980' on page 42 undefined on input line 124.
>
>
> LaTeX Warning: Citation `Nocedal1980' on page 42 undefined on input line 182.
>
> [42]))
> Chapter 9.
>
> LaTeX Warning: Reference `SPECKLEY:FIG:MESHES' on page 135 undefined on input l
> ine 56.
>
> [135 [43]])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.tex [136 [44] </<<PKGBUILDDIR>>/debian/tmp3/posix/
> doc/user/figures//speckley3.png (PNG copy)> </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/user/figures//speckley6.png (PNG copy)> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//speckley9.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.tex
> Chapter 10.
>
> LaTeX Warning: Reference `sec:weipafuncs' on page 137 undefined on input line 3
> 2.
>
> [137]
>
> LaTeX Warning: Citation `GOCAD' on page 138 undefined on input line 136.
>
> [138
> Chapter 6.
>
> LaTeX Warning: Citation `Featherstone2008a' on page 45 undefined on input line
> 48.
>
> [45]] [46 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//cartesian.pdf
>
> LaTeX Warning: Citation `VisIt' on page 139 undefined on input line 174.
>
>
> LaTeX Warning: Reference `ELASTIC CHAP' on page 139 undefined on input line 182
> .
>
> [139]>] [47 </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//geosphir.png) [140]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.tex
> Chapter 11.
>
> LaTeX Warning: Citation `TrilinosWeb' on page 141 undefined on input line 18.
>
>
> LaTeX Warning: Reference `CONST1a' on page 141 undefined on input line 26.
>
>
> LaTeX Warning: Reference `BC2' on page 141 undefined on input line 26.
>
>
> LaTeX Warning: Reference `simplemesh' on page 141 undefined on input line 33.
>
> [141]
>
> LaTeX Warning: Reference `basic' on page 142 undefined on input line 84.
>
>
> LaTeX Warning: Reference `basic' on page 142 undefined on input line 114.
>
> [142]
>
> LaTeX Warning: Reference `basic' on page 143 undefined on input line 124.
>
>
> LaTeX Warning: Reference `resEQ' on page 143 undefined on input line 162.
>
>
> LaTeX Warning: Reference `matrixEQ' on page 143 undefined on input line 162.
>
>
> LaTeX Warning: Citation `Briggs2000' on page 143 undefined on input line 164.
>
> [143]>]
>
> LaTeX Warning: Citation `Briggs2000' on page 144 undefined on input line 188.
>
>
> LaTeX Warning: Citation `Stuben2001281' on page 144 undefined on input line 188
> .
>
>
> LaTeX Warning: Citation `Vanek1996' on page 144 undefined on input line 188.
>
>
> LaTeX Warning: Citation `Tuminaro2000' on page 144 undefined on input line 188.
>
>
>
> LaTeX Warning: Citation `TrilinosWeb' on page 144 undefined on input line 205.
>
>
> LaTeX Warning: Reference `defaultAMG' on page 144 undefined on input line 206.
>
>
> LaTeX Warning: Reference `basicAMG' on page 144 undefined on input line 206.
>
> [144]
> Underfull \hbox (badness 10000) in paragraph at lines 261--261
> [][][]\OT1/ptm/m/n/8 In gen-eral any or-thog-o-nal co-or-di-nate trans-for-ma-t
> ion can be sup-ported by build-ing sub-classes of the
> [48] [145] [49]) [50]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.tex
> Chapter 7.
>
> LaTeX Warning: Citation `Nocedal1980' on page 51 undefined on input line 40.
>
> [51]
> Underfull \hbox (badness 10000) in paragraph at lines 266--271
>
>
> Overfull \hbox (0.87425pt too wide) in paragraph at lines 278--279
> []\OT1/pcr/m/n/10 "Elasticity-2D" and "Elasticity-3D"\OT1/ptm/m/n/10 : us-ing s
> moothed ag-gre-ga-tion, Cheby-shev smoother and
> [146] [52]
>
> LaTeX Warning: Citation `Nocedal1980' on page 53 undefined on input line 215.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [53]
>
> LaTeX Warning: Citation `Nocedal2006' on page 54 undefined on input line 256.
>
>
> LaTeX Warning: Citation `MoreThuente1992' on page 54 undefined on input line 25
> 7.
>
> ) [54]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.tex
> Chapter 8.
> [55] [147]
>
> LaTeX Warning: Citation `ESCRIPT' on page 56 undefined on input line 83.
>
> [56] [57] [58] [59]) [60]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.tex
> Chapter 9.
> [61 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inve
> rsion/figures//domainbuilder.pdf [148>]] [62]
>
> LaTeX Warning: Citation `ESCRIPT' on page 63 undefined on input line 158.
>
> [63]
>
> LaTeX Warning: Citation `ERMAPPER' on page 64 undefined on input line 277.
>
> [64]
>
> LaTeX Warning: Citation `NETCDF' on page 65 undefined on input line 318.
>
>
> LaTeX Warning: Citation `matplotlib' on page 65 undefined on input line 328.
>
> [65]) [66]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.tex
> Chapter 10.
>
> LaTeX Warning: Citation `GALLARDO2005a' on page 67 undefined on input line 28.
>
> [67]
>
> LaTeX Warning: Reference `simplebob' on page 149 undefined on input line 422.
>
>
> LaTeX Warning: Reference `complicatedbob' on page 149 undefined on input line 4
> 36.
>
>
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 454--455
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (3.76056pt too wide) in paragraph at lines 464--465
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 466--467
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [149] [68]) [69]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.tex [70]) [150]or file Assemble_getNormal.cpp...
> Parsing code for file Assemble_getNormal.cpp...
> Parsing code for file Assemble_getSize.cpp...
> Parsing code for file Assemble_getSize.cpp...
> Parsing code for file Assemble_gradient.cpp...
> Parsing code for file Assemble_gradient.cpp...
> Parsing code for file Assemble_integrate.cpp...
> Parsing code for file Assemble_integrate.cpp...
> Parsing code for file Assemble_interpolate.cpp...
> Parsing code for file Assemble_interpolate.cpp...
> Parsing code for file Assemble_jacobians.cpp...
> Parsing code for file Assemble_jacobians.cpp...
> Parsing code for file Assemble_LumpedSystem.cpp...
> Parsing code for file Assemble_LumpedSystem.cpp...
> Parsing code for file Assemble_NodeCoordinates.cpp...
> Parsing code for file Assemble_NodeCoordinates.cpp...
> Parsing code for file Assemble_PDE.cpp...
> Parsing code for file Assemble_PDE.cpp...
> Parsing code for file Assemble_PDE_Points.cpp...
> Parsing code for file Assemble_PDE_Points.cpp...
> Parsing code for file Assemble_PDE_Single_1D.cpp...
> Parsing code for file Assemble_PDE_Single_2D.cpp...
> Parsing code for file Assemble_PDE_Single_2D.cpp...
> Parsing code for file Assemble_PDE_Single_3D.cpp...
> Parsing code for file Assemble_PDE_Single_3D.cpp...
> Parsing code for file Assemble_PDE_Single_C.cpp...
> Parsing code for file Assemble_PDE_System_1D.cpp...
> Parsing code for file Assemble_PDE_System_2D.cpp...
> Parsing code for file Assemble_PDE_System_2D.cpp...
> Parsing code for file Assemble_PDE_System_3D.cpp...
> Parsing code for file Assemble_PDE_System_3D.cpp...
> Parsing code for file Assemble_PDE_System_C.cpp...
> Generating code for file Assert.h...
> Parsing code for file BiCGStab.cpp...
> Parsing code for file BinaryDataReadyOps.cpp...
> Generating code for file BinaryDataReadyOps.h...
> Generating code for file BlockOps.h...
> Parsing code for file blocktools.cpp...
> Generating code for file blocktools.h...
> Parsing code for file blocktools2.cpp...
> Parsing code for file Brick.cpp...
> Parsing code for file Brick.cpp...
> Generating code for file Brick.h...
> Generating code for file Brick.h...
> Parsing code for file BrickGradients.cpp...
> Parsing code for file BrickIntegrals.cpp...
> Parsing code for file BrickReductions.cpp...
> Parsing code for file Coupler.cpp...
> Generating code for file Coupler.h...
> Parsing code for file CrossDomainCoupler.cpp...
> Generating code for file CrossDomainCoupler.h...
> Parsing code for file Data.cpp...
> Generating code for file Data.h...
> Parsing code for file DataAbstract.cpp...
> Generating code for file DataAbstract.h...
> Parsing code for file DataConstant.cpp...
> Generating code for file DataConstant.h...
> Parsing code for file DataEmpty.cpp...
> Generating code for file DataEmpty.h...
> Generating code for file DataException.h...
> Parsing code for file DataExpanded.cpp...
> Generating code for file DataExpanded.h...
> Parsing code for file DataFactory.cpp...
> Generating code for file DataFactory.h...
> Parsing code for file DataLazy.cpp...
> Generating code for file DataLazy.h...
> Parsing code for file DataReady.cpp...
> Generating code for file DataReady.h...
> Parsing code for file DataTagged.cpp...
> Generating code for file DataTagged.h...
> Parsing code for file DataTypes.cpp...
> Generating code for file DataTypes.h...
> Parsing code for file DataVar.cpp...
> Generating code for file DataVar.h...
> Parsing code for file DataVector.cpp...
> Generating code for file DataVector.h...
> Parsing code for file DataVectorAlt.cpp...
> Generating code for file DataVectorAlt.h...
> Parsing code for file DataVectorOps.cpp...
> Generating code for file DataVectorOps.h...
> Parsing code for file DataVectorTaipan.cpp...
> Generating code for file DataVectorTaipan.h...
> Parsing code for file DefaultAssembler2D.cpp...
> Parsing code for file DefaultAssembler2D.cpp...
> Generating code for file DefaultAssembler2D.h...
> Generating code for file DefaultAssembler2D.h...
> Parsing code for file DefaultAssembler3D.cpp...
> Parsing code for file DefaultAssembler3D.cpp...
> Generating code for file DefaultAssembler3D.h...
> Generating code for file DefaultAssembler3D.h...
> Generating code for file Distribution.h...
> Parsing code for file Dodgy.cpp...
> Generat>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.tex]
> Chapter 11.
> [71]) [72]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.tex
> Chapter 12.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardGravity.tex
> Chapter 12.
>
> LaTeX Warning: Citation `Sympy' on page 151 undefined on input line 20.
>
>
> Underfull \vbox (badness 10000) has occurred while \output is active [151] [73] [74])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagnetic.tex
>
> LaTeX Warning: Citation `IGRF' on page 75 undefined on input line 34.
>
>
> LaTeX Warning: Citation `AGRF' on page 75 undefined on input line 35.
>
> [75
> Overfull \hbox (24.65349pt too wide) in paragraph at lines 85--88
> \OT1/ptm/m/n/10 This re-verse spline op-tion un-for-tu-nately does not work for
> the [][]\OT1/pcr/m/n/10 getLoopCoords []\OT1/ptm/m/n/10 com-mand, how-ever, th
> e []
>
> LaTeX Warning: Reference `fig:anticlinetemp' on page 42 undefined on input line
> 127.
>
> [42]] [43pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.5}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.134 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/heatrefraction.png
>
> LaTeX Warning: Reference `symbolic eq1' on page 152 undefined on input line 72.
>
>
>
> LaTeX Warning: Reference `symbolic eq1' on page 152 undefined on input line 74.
>
>
>
> LaTeX Warning: Reference `symbolic eq1' on page 152 undefined on input line 75.
>
>
>
> LaTeX Warning: Reference `SEC LinearPDE' on page 152 undefined on input line 80
> .
>
>
> LaTeX Warning: Reference `symbolic eq2' on page 152 undefined on input line 87.
>
>
> [152 [76]] [77])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagneticIntensity.tex [78] [79])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardSelfMagnetic.tex
>
> LaTeX Warning: Citation `Lelievre2006a' on page 80 undefined on input line 21.
>
> [80]>] [81])
>
> LaTeX Warning: Reference `isovsaniso' on page 153 undefined on input line 185.
>
>
> LaTeX Warning: `!h' float specifier changed to `!ht'.
>
> [153]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Forward2DMTTEMode.tex
>
> LaTeX Warning: Citation `chave2012magnetotelluric' on page 82 undefined on inpu
> t line 18.
>
> [82] [154 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//0RotAniso.png [83])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardDCRES.tex [84
> Underfull \hbox (badness 10000) in paragraph at lines 137--142
>
>
> LaTeX Warning: Reference `figs:dps' on page 44 undefined on input line 179.
>
> [44]] [45pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.6}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.199 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/heatrefractiontdp.png
>
> LaTeX Warning: Citation `rucker2006three' on page 85 undefined on input line 32
> .
>
>
> LaTeX Warning: Citation `LOKE2014' on page 85 undefined on input line 62.
>
> [85]
>
> LaTeX Warning: Citation `LOKE2014' on page 86 undefined on input line 124.
>
> [86])) [87] [88]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.ind [89]) [90]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.bbl [91]) [92]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.aux> </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/user/figures//0RotIso.png
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.aux))
>
> Package rerunfilecheck Warning: File `inversion.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmbx7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex1
> 0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra/cmex7.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb>> </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/heatrefractiontgdp.pn
> g</usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></u
> sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/shar
> e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texli
> ve/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrr8a.pfb> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//MidRotAniso.png></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic
> /uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb>
> </usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-
> dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type
> 1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utm
> r8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
> Output written on inversion.pdf (92 pages, 5273376 bytes).
> Transcript written on inversion.log.
> cd debian/tmp3/posix/doc/inversion && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{inversion.tex} inversion.tex
> > </bui
> ld/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures/
> /MidRotIso.png> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookb
> ook/figures/heatrefractiontcdp.pngThis is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> > </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//diffaniso.pngentering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/esysdoc.cls
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))> </<<BUILDDIR>>/python-escrip
> t-5.5/debian/tmp3/posix/doc/cookbook/figures/heatrefractionhf.png
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty>]
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) [155] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) [156]
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.tex
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
> Chapter 13.
> [157
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)])
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)>]
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
>
> LaTeX Warning: Reference `splitworldClass' on page 158 undefined on input line
> 82.
>
> [158
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) [159)]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty) [160]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.tex
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/not
> ation.tex
>
> LaTeX Warning: Reference `fig:hr001qumodel' on page 46 undefined on input line
> 204.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 202--209
>
>
> LaTeX Warning: Reference `Sec:2DHD plot' on page 46 undefined on input line 210
> .
>
>
> Overfull \hbox (5.0533pt too wide) in paragraph at lines 210--216
> []\OT1/ptm/m/n/10 Contours have al-ready been dis-cussed in Sec-tion []. To sho
> w sub-domains, we need to go back to []
>
> LaTeX Warning: Reference `fig:hr001qumodel' on page 46 undefined on input line
> 284.
>
> [46
> Appendix A.
> )]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) [47
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cha
> nges.texpdfTeX warning (ext4): destination with the same identifier (name{figur
> e.4.7}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.291 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/heatrefractionflux.png [161] [162]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)ing code for file Dodgy.h...
> Generating code for file DomainChunk.h...
> Generating code for file DomainException.h...
> Parsing code for file DomainFactory.cpp...
> Parsing code for file DomainFactory.cpp...
> Generating code for file DomainFactory.h...
> Generating code for file DomainFactory.h...
> Parsing code for file domainhelpers.cpp...
> Parsing code for file domainhelpers.cpp...
> Generating code for file domainhelpers.h...
> Generating code for file domainhelpers.h...
> Generating code for file Dudley.h...
> Parsing code for file dudleycpp.cpp...
> Parsing code for file DudleyDomain.cpp...
> Generating code for file DudleyDomain.h...
> Generating code for file DudleyException.h...
> Generating code for file DudleyVersion.h...
> Generating code for file ElementData.h...
> Parsing code for file ElementFile.cpp...
> Parsing code for file ElementFile.cpp...
> Generating code for file ElementFile.h...
> Generating code for file ElementFile.h...
> Parsing code for file ElementFile_createColoring.cpp...
> Parsing code for file ElementFile_distributeByRankOfDOF.cpp...
> Parsing code for file ElementFile_jacobians.cpp...
> Parsing code for file ElementFile_jacobians.cpp...
> Generating code for file ElementType.h...
> Parsing code for file ES_optype.cpp...
> Generating code for file ES_optype.h...
> Parsing code for file escriptcpp.cpp...
> Parsing code for file EscriptDataset.cpp...
> Generating code for file EscriptDataset.h...
> Parsing code for file EscriptParams.cpp...
> Generating code for file EscriptParams.h...
> Generating code for file EsysException.h...
> Parsing code for file EsysMPI.cpp...
> Generating code for file EsysMPI.h...
> Parsing code for file ExceptionTranslators.cpp...
> Generating code for file ExceptionTranslators.h...
> Parsing code for file FCT_Solver.cpp...
> Generating code for file FCT_Solver.h...
> Generating code for file FileWriter.h...
> Generating code for file Finley.h...
> Parsing code for file finleycpp.cpp...
> Parsing code for file FinleyDomain.cpp...
> Parsing code for file FinleyDomain.cpp...
> Generating code for file FinleyDomain.h...
> Generating code for file FinleyDomain.h...
> Parsing code for file FinleyElements.cpp...
> Generating code for file FinleyElements.h...
> Generating code for file FinleyException.h...
> Parsing code for file FinleyNodes.cpp...
> Generating code for file FinleyNodes.h...
> Generating code for file FinleyVersion.h...
> Parsing code for file FluxLimiter.cpp...
> Generating code for file FluxLimiter.h...
> Parsing code for file Functions.cpp...
> Generating code for file Functions.h...
> Parsing code for file FunctionSpace.cpp...
> Generating code for file FunctionSpace.h...
> Generating code for file FunctionSpaceException.h...
> Parsing code for file FunctionSpaceFactory.cpp...
> Generating code for file FunctionSpaceFactory.h...
> Parsing code for file GMRES.cpp...
> Parsing code for file GMRES2.cpp...
> Parsing code for file ILU.cpp...
> Generating code for file index.h...
> Parsing code for file IndexList.cpp...
> Parsing code for file IndexList.cpp...
> Generating code for file IndexList.h...
> Generating code for file IndexList.h...
> Generating code for file IndexList.h...
> Generating code for file lagrange_functions.h...
> Parsing code for file LameAssembler2D.cpp...
> Generating code for file LameAssembler2D.h...
> Parsing code for file LameAssembler3D.cpp...
> Generating code for file LameAssembler3D.h...
> Parsing code for file LapackInverseHelper.cpp...
> Generating code for file LapackInverseHelper.h...
> Parsing code for file Mesh_addPoints.cpp...
> Parsing code for file Mesh_distributeByRankOfDOF.cpp...
> Parsing code for file Mesh_findMatchingFaces.cpp...
> Parsing code for file Mesh_getPasoPattern.cpp...
> Parsing code for file Mesh_getPattern.cpp...
> Parsing code for file Mesh_getTrilinosGraph.cpp...
> Parsing code for file Mesh_glueFaces.cpp...
> Parsing code for file Mesh_hex20.cpp...
> Parsing code for file Mesh_hex8.cpp...
> Parsing code for file Mesh_joinFaces.cpp...
> Parsing code for file Mesh_merge.cpp...
> Parsing code for file Mesh_optimizeDOFDistribution.cpp...
> Parsing code for file Mesh_optimizeDOFDistribution.cpp...
> Parsing code for file Mesh_optimizeDOFLabeling.cpp...
> Parsing code for fi
> Appendix B.
> [163]
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty) [164] [165])
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty) [166]
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty [167])
>
> LaTeX Warning: Reference `sec:interpolation' on page 168 undefined on input lin
> e 216.
>
> [168]
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
>
> LaTeX Warning: Reference `sec:lazy' on page 169 undefined on input line 272.
>
>
> LaTeX Warning: Reference `sec:savedatacsv' on page 169 undefined on input line
> 277.
>
> [169])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/com
> pletedevs.tex [170]
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> Appendix C.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/our
> refs.tex [171
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty]) [172]
> Appendix D.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) [173]
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/py3
> .tex [174]
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> Appendix E.
> )) [175] [176]
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> No file user.ind.
> No file user.bbl.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
>
> Package rerunfilecheck Warning: File `user.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra
> /cmex8.pfb>
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10
> .pfb>)</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb)></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty>)</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pf
> b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb>)</usr/share/texliv
> e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texlive/texmf
> -dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def></usr/share/texlive/texmf-dist/f
> onts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/latxfont/lcirclew.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/line10.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/linew10.pfb></usr/share/texlive/texmf-d
> ist/fonts/type1/public/amsfonts/symbols/msam7.pfb></usr/share/texlive/texmf-dis
> t/fonts/type1/public/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrr8a.pfb>
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty</usr/share/texlive/texmf-dist/fonts/type1/urw/courier/u
> crro8a.pfb)></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb><
> /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
> pe1/urw/times/utmb8a.pfb>
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty</usr/share/texlive/texmf-dist/fonts/type1/urw/times/u
> tmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive
> /texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> Output written on user.pdf (176 pages, 2592599 bytes).
> Transcript written on user.log.
> cd debian/tmp3/posix/doc/user && bibtex user
>
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)>]
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
>
> LaTeX Warning: Reference `fig:hr002qumodel' on page 48 undefined on input line
> 297.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 294--299
>
> [48pdfTeX warning (ext4): destination with the same identifier (name{figure.4.8
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.305 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/heatrefraction2flux.png)This is BibTeX, Version 0.99d (TeX Live 2020/Debian)
> The top-level auxiliary file: user.aux
> The style file: plain.bst
> Database file #1: esys.bib
>
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/elist.texcd debian/tmp3/posix/doc/user && makeindex user.idx
> (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> )) (/usr/share/texlive/texmf-dist/tex/latex/program/program.styThis is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
> Scanning input file user.idx....done (716 entries accepted, 12 rejected).
> Sorting entries........done (7122 comparisons).
> Generating output file user.ind....done (353 lines written, 0 warnings).
> Output written in user.ind.
> Transcript written in user.ilg.
>
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/ueur.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.stycd debian/tmp3/posix/doc/user && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{user.tex} user.tex
>
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/defs.tex)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/verinfo.tex)This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
>
> Writing index file inversion.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.aux)entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.aux xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.tex))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esy
> sdoc.cls
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> )
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> )) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map)}]
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/docguide.tex) [2]) [3
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)] [4]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.toc
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [5]
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) [6]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.tex) [7]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty [8] [9] [10]
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.tex
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> Chapter 1.
>
> Underfull \hbox (badness 10000) in paragraph at lines 54--54
> []\OT1/ptm/m/n/10 Figure 1.1: Grav-ity Anomaly Data in $\OML/cmm/m/it/10 mgal$
> \OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
>
> Underfull \hbox (badness 10000) in paragraph at lines 65--65
> []\OT1/ptm/m/n/10 Figure 1.2: 3-D con-tour plot of the den-sity dis-tri-bu-tion
> ob-tained by in-ver-sion of file
> [11
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)]) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)))>])le Mesh_read.cpp...
> Parsing code for file Mesh_read.cpp...
> Parsing code for file Mesh_readGmsh.cpp...
> Parsing code for file Mesh_readGmsh.cpp...
> Parsing code for file Mesh_rec4.cpp...
> Parsing code for file Mesh_rec8.cpp...
> Parsing code for file Mesh_resolveNodeIds.cpp...
> Parsing code for file Mesh_tet4.cpp...
> Parsing code for file Mesh_tri3.cpp...
> Parsing code for file Mesh_write.cpp...
> Parsing code for file Mesh_write.cpp...
> Parsing code for file MINRES.cpp...
> Parsing code for file MKL.cpp...
> Generating code for file MKL.h...
> Parsing code for file mmio.cpp...
> Generating code for file mmio.h...
> Parsing code for file MPIDataReducer.cpp...
> Generating code for file MPIDataReducer.h...
> Parsing code for file MPIScalarReducer.cpp...
> Generating code for file MPIScalarReducer.h...
> Parsing code for file MultiBrick.cpp...
> Generating code for file MultiBrick.h...
> Parsing code for file MultiRectangle.cpp...
> Generating code for file MultiRectangle.h...
> Parsing code for file NCHelper.cpp...
> Generating code for file NCHelper.h...
> Parsing code for file NewtonGMRES.cpp...
> Generating code for file NodeData.h...
> Parsing code for file NodeFile.cpp...
> Parsing code for file NodeFile.cpp...
> Generating code for file NodeFile.h...
> Generating code for file NodeFile.h...
> Parsing code for file NodeFile_createDenseLabelings.cpp...
> Parsing code for file NodeFile_createMappings.cpp...
> Parsing code for file NodeFile_createTrilinosGraph.cpp...
> Parsing code for file NodeFile_gather.cpp...
> Generating code for file NodeMapping.h...
> Generating code for file NodeMapping.h...
> Parsing code for file NonReducedVariable.cpp...
> Generating code for file NonReducedVariable.h...
> Parsing code for file NullDomain.cpp...
> Generating code for file NullDomain.h...
> Parsing code for file Options.cpp...
> Generating code for file Options.h...
> Generating code for file Paso.h...
> Generating code for file PasoException.h...
> Parsing code for file PasoUtil.cpp...
> Generating code for file PasoUtil.h...
> Parsing code for file Pattern.cpp...
> Generating code for file Pattern.h...
> Parsing code for file Pattern_mis.cpp...
> Parsing code for file Pattern_reduceBandwidth.cpp...
> Parsing code for file PCG.cpp...
> Parsing code for file performance.cpp...
> Generating code for file performance.h...
> Generating code for file Pointers.h...
> Parsing code for file Preconditioner.cpp...
> Generating code for file Preconditioner.h...
> Parsing code for file pyerr.cpp...
> Generating code for file pyerr.h...
> Parsing code for file Quadrature.cpp...
> Generating code for file Quadrature.h...
> Parsing code for file Random.cpp...
> Generating code for file Random.h...
> Parsing code for file ReactiveSolver.cpp...
> Generating code for file ReactiveSolver.h...
> Parsing code for file Rectangle.cpp...
> Parsing code for file Rectangle.cpp...
> Generating code for file Rectangle.h...
> Generating code for file Rectangle.h...
> Parsing code for file RectangleGradients.cpp...
> Parsing code for file RectangleIntegrals.cpp...
> Parsing code for file RectangleReductions.cpp...
> Parsing code for file ReferenceElements.cpp...
> Generating code for file ReferenceElements.h...
> Generating code for file ReferenceElementSets.h...
> Parsing code for file RILU.cpp...
> Generating code for file Ripley.h...
> Parsing code for file ripleycpp.cpp...
> Parsing code for file RipleyDomain.cpp...
> Parsing code for file RipleyDomain.cpp...
> Generating code for file RipleyDomain.h...
> Generating code for file RipleyDomain.h...
> Parsing code for file RipleyElements.cpp...
> Generating code for file RipleyElements.h...
> Generating code for file RipleyException.h...
> Parsing code for file RipleyNodes.cpp...
> Generating code for file RipleyNodes.h...
> Generating code for file RipleySystemMatrix.h...
> Parsing code for file SchurComplement.cpp...
> Parsing code for file ScriptMPI.cpp...
> Parsing code for file ScriptMPIredirect.cpp...
> Parsing code for file ShapeFunctions.cpp...
> Generating code for file ShapeFunctions.h...
> Parsing code for file ShapeTable.cpp...
> Generating code for file ShapeTable.h...
> Generating code for file SharedComponents.h...
> Parsing code for file Smoother.cpp...
> Parsing code f
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> Chapter 5.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example07.tex
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty [12 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figu
> res//QLDWestGravityDataPlot.png
>
> LaTeX Warning: Reference `eqn:laplacian' on page 49 undefined on input line 41.
>
>
>
> LaTeX Warning: Reference `eqn:grad' on page 49 undefined on input line 72.
>
>
> LaTeX Warning: Reference `eqn:gradrank1' on page 49 undefined on input line 79.
>
>
> [49)]
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> Underfull \hbox (badness 10000) in paragraph at lines 154--155
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 154--155
>
>
> LaTeX Warning: Reference `eqn:centdiff' on page 50 undefined on input line 162.
>
>
>
> LaTeX Warning: Reference `eqn:acswave' on page 50 undefined on input line 163.
>
> [50
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty]
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty
>
> LaTeX Warning: Reference `fig:cxsource' on page 51 undefined on input line 241.
>
>
> [51)]
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
> Underfull \hbox (badness 10000) in paragraph at lines 279--280
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 279--280
>
> [52pdfTeX warning (ext4): destination with the same identifier (name{figure.5.1
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.280
> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/c
> ookbook/figures/sourceline.png
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)>]
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty>] [13 </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravContourMu10.png (PNG co
> py)>]
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
>
> LaTeX Warning: Reference `eqn:waveu' on page 53 undefined on input line 284.
>
>
> LaTeX Warning: Reference `sec:nsstab' on page 53 undefined on input line 326.
>
>
> LaTeX Warning: Reference `eqn:samptheorem' on page 53 undefined on input line 3
> 33.
>
>
> LaTeX Warning: Reference `fig:ex07sampth' on page 53 undefined on input line 33
> 5.
>
> [53 [14])
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)] [54pdfTeX warning (ext4): destination with the same identifier (name{figu
> re.5.2}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.122 \chapter
> {Seismic Wave Propagation} </<<BUILDDIR>>/python-e
> script-5.5/debian/tmp3/posix/doc/cookbook/figures/ex07usamp.png (PNG copy)> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/fi
> gures/ex07jsamp.png [15 (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/inversion/figures//dom2D.pdf </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/cookbook/figures/ex07nsamp.png (PNG copy)>]> </<<BUILDDIR>>/python-escri
> pt-5.5/debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf
>
> pdfTeX warning: pdflatex (file /<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/inversion/figures//dom2DFEM.pdf): PDF inclusion: multiple
> pdfs with page group included in a single page
> >])
> Chapter 6.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example08.tex
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [16]
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) [17]
> Underfull \hbox (badness 10000) in paragraph at lines 18--24
>
>
> LaTeX Warning: Reference `eqn:wav' on page 55 undefined on input line 40.
>
>
> LaTeX Warning: Reference `eqn:sigtrace' on page 55 undefined on input line 59.
>
>
> LaTeX Warning: Reference `eqn:sigtrans' on page 55 undefined on input line 62.
>
> [55]
> [18
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty]
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
>
> LaTeX Warning: Reference `tab:wpcores' on page 56 undefined on input line 116.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 139--145
>
> [56
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.stypdfTeX warning (ext4): destination with the same identifier (name{table.6.1}
> ) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.153 #
> ###########################################FIRST TIME STEPS AND SOURCE])
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r_defs.tex (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg)) [19
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty] [20 </<<PKGBUILDDIR>>/debian/tmp3/posi
> x/doc/inversion/figures//QLDGravContourMu01.png (PNG copy)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)> </build/python-escr
> ipt-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravC
> ontourMu1.png (PNG copy)> </<<PKGBUILDDIR>>/debi
> an/tmp3/posix/doc/inversion/figures//QLDGravContourMu100.png (PNG copy)> </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figu
> res//QLDGravContourMu1000.png (PNG copy))>
>
> ! LaTeX Error: \verb ended by end of line.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type H <return> for immediate help.
> ...
>
> l.163 ...t on the boundary of the model. Note that
>
>
> Overfull \hbox (16.855pt too wide) in paragraph at lines 163--171
> \OT1/ptm/m/n/10 where [][]\OT1/pcr/m/n/10 c is the source point on the boundar
> y of the model. Note that[]\OT1/ptm/m/n/10 because the source
> [57] [21] </<<BUILDDIR>>/py
> thon-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthMu01.png
> (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/
> doc/inversion/figures//QLDGravDepthMu1.png (PNG copy)> </build/python-escript-G
> iQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDGravDepthM
> u10.png (PNG copy)> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/inversion/figures//QLDGravDepthMu100.png (PNG copy) [58> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLD
> GravDepthMu1000.png (PNG copy)pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.6.1}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.214 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex08pw50.png>] (PNG copy)> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex08pw350.png (PNG
> copy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/c
> ookbook/figures/ex08pw650.png (PNG copy)> </<<BUILDDIR>>/python-
> escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex08pw950.png (PNG copy)>]
> (/usr/share/texlive/texmf-dist/tex/latex/ccaption/ccaption.sty) [22
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/eli
> st.tex </<<BUILDDIR>>/python-escri
> pt-5.5/debian/tmp3/posix/doc/inversion/figures//onshore-offshore.png (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> ))) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/ver
> info.tex)
> Underfull \hbox (badness 10000) in paragraph at lines 218--223
>
>
> LaTeX Warning: Reference `fig:tvsource' on page 59 undefined on input line 228.
>
>
> [59pdfTeX warning (ext4): destination with the same identifier (name{figure.6.2
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.273 t=
> t+h; n=n+1 </<<PKGBUILDDIR>>/debian/tmp3
> /posix/doc/cookbook/figures/source.png
> Writing index file user.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> )or file solve.cpp...
> Parsing code for file Solver.cpp...
> Generating code for file Solver.h...
> Parsing code for file Solver_Function.cpp...
> Parsing code for file SolverOptions.cpp...
> Generating code for file SolverOptions.h...
> Parsing code for file SparseMatrix.cpp...
> Generating code for file SparseMatrix.h...
> Parsing code for file SparseMatrix_getSubmatrix.cpp...
> Parsing code for file SparseMatrix_MatrixMatrix.cpp...
> Parsing code for file SparseMatrix_MatrixMatrixTranspose.cpp...
> Parsing code for file SparseMatrix_MatrixVector.cpp...
> Parsing code for file SparseMatrix_nullifyRowsAndCols.cpp...
> Parsing code for file SparseMatrix_saveHB.cpp...
> Generating code for file Speckley.h...
> Parsing code for file speckleycpp.cpp...
> Parsing code for file SpeckleyDomain.cpp...
> Parsing code for file SpeckleyDomain.cpp...
> Generating code for file SpeckleyDomain.h...
> Generating code for file SpeckleyDomain.h...
> Parsing code for file SpeckleyElements.cpp...
> Generating code for file SpeckleyElements.h...
> Generating code for file SpeckleyException.h...
> Parsing code for file SpeckleyNodes.cpp...
> Generating code for file SpeckleyNodes.h...
> Parsing code for file SplitWorld.cpp...
> Generating code for file SplitWorld.h...
> Generating code for file SplitWorldException.h...
> Parsing code for file SubWorld.cpp...
> Generating code for file SubWorld.h...
> Generating code for file system_dep.h...
> Generating code for file system_dep.h...
> Generating code for file system_dep.h...
> Parsing code for file SystemMatrix.cpp...
> Generating code for file SystemMatrix.h...
> Parsing code for file SystemMatrix_copyRemoteCoupleBlock.cpp...
> Parsing code for file SystemMatrix_debug.cpp...
> Parsing code for file SystemMatrix_extendedRows.cpp...
> Parsing code for file SystemMatrix_loadMM.cpp...
> Parsing code for file SystemMatrix_MatrixVector.cpp...
> Parsing code for file SystemMatrix_mergeMainAndCouple.cpp...
> Generating code for file SystemMatrixException.h...
> Parsing code for file SystemMatrixPattern.cpp...
> Generating code for file SystemMatrixPattern.h...
> Parsing code for file SystemMatrixPattern_unrollBlocks.cpp...
> Parsing code for file Taipan.cpp...
> Generating code for file Taipan.h...
> Parsing code for file TestDomain.cpp...
> Generating code for file TestDomain.h...
> Parsing code for file TFQMR.cpp...
> Parsing code for file Transport.cpp...
> Generating code for file Transport.h...
> Parsing code for file Transport_solve.cpp...
> Generating code for file TransportProblemException.h...
> Parsing code for file UMFPACK.cpp...
> Generating code for file UMFPACK.h...
> Parsing code for file Util.cpp...
> Parsing code for file Util.cpp...
> Generating code for file Util.h...
> Generating code for file Util.h...
> Parsing code for file Utils.cpp...
> Generating code for file Utils.h...
> Parsing code for file VisItControl.cpp...
> Generating code for file VisItControl.h...
> Parsing code for file VisItData.cpp...
> Generating code for file VisItData.h...
> Generating code for file vtkCellType.h...
> Parsing code for file WaveAssembler2D.cpp...
> Parsing code for file WaveAssembler2D.cpp...
> Generating code for file WaveAssembler2D.h...
> Generating code for file WaveAssembler2D.h...
> Parsing code for file WaveAssembler3D.cpp...
> Parsing code for file WaveAssembler3D.cpp...
> Generating code for file WaveAssembler3D.h...
> Generating code for file WaveAssembler3D.h...
> Generating code for file weipa.h...
> Parsing code for file weipacpp.cpp...
> Generating code for file WeipaException.h...
> Parsing code for file WrappedArray.cpp...
> Generating code for file WrappedArray.h...
> Generating file documentation...
> Generating docs for file AbstractAssembler.cpp...
> Generating docs for file AbstractAssembler.h...
> Generating docs for file AbstractAssembler.h...
> Generating docs for file AbstractContinuousDomain.cpp...
> Generating docs for file AbstractContinuousDomain.h...
> Generating docs for file AbstractDomain.cpp...
> Generating docs for file AbstractDomain.h...
> Generating docs for file AbstractReducer.cpp...
> Generating docs for file AbstractReducer.h...
> Generating docs for file AbstractSystemMatrix.cpp...
> Generating docs for file AbstractSystemMat (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty>]>]
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)))
> [23]
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.tex [24]
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
>
> Package natbib Warning: Citation `Cerjan1985' on page 60 undefined on input lin
> e 293.
>
> [60)])
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)rix.h...
> Generating docs for file AbstractTransportProblem.cpp...
> Generating docs for file AbstractTransportProblem.h...
> Generating docs for file ArrayOps.cpp...
> Generating docs for file ArrayOps.h...
> Generating docs for file Assemble.h...
> Generating docs for file Assemble.h...
> Generating docs for file Assemble_addToSystemMatrix.cpp...
> Generating docs for file Assemble_addToSystemMatrix.cpp...
> Generating docs for file Assemble_AverageElementData.cpp...
> Generating docs for file Assemble_AverageElementData.cpp...
> Generating docs for file Assemble_CopyElementData.cpp...
> Generating docs for file Assemble_CopyElementData.cpp...
> Generating docs for file Assemble_CopyNodalData.cpp...
> Generating docs for file Assemble_CopyNodalData.cpp...
> Generating docs for file Assemble_getAssembleParameters.cpp...
> Generating docs for file Assemble_getAssembleParameters.cpp...
> Generating docs for file Assemble_getNormal.cpp...
> Generating docs for file Assemble_getNormal.cpp...
> Generating docs for file Assemble_getSize.cpp...
> Generating docs for file Assemble_getSize.cpp...
> Generating docs for file Assemble_gradient.cpp...
> Generating docs for file Assemble_gradient.cpp...
> Generating docs for file Assemble_integrate.cpp...
> Generating docs for file Assemble_integrate.cpp...
> Generating docs for file Assemble_interpolate.cpp...
> Generating docs for file Assemble_interpolate.cpp...
> Generating docs for file Assemble_jacobians.cpp...
> Generating docs for file Assemble_jacobians.cpp...
> Generating docs for file Assemble_LumpedSystem.cpp...
> Generating docs for file Assemble_LumpedSystem.cpp...
> Generating docs for file Assemble_NodeCoordinates.cpp...
> Generating docs for file Assemble_NodeCoordinates.cpp...
> Generating docs for file Assemble_PDE.cpp...
> Generating docs for file Assemble_PDE.cpp...
> Generating docs for file Assemble_PDE_Points.cpp...
> Generating docs for file Assemble_PDE_Points.cpp...
> Generating docs for file Assemble_PDE_Single_1D.cpp...
> Generating docs for file Assemble_PDE_Single_2D.cpp...
> Generating docs for file Assemble_PDE_Single_2D.cpp...
> Generating docs for file Assemble_PDE_Single_3D.cpp...
> Generating docs for file Assemble_PDE_Single_3D.cpp...
> Generating docs for file Assemble_PDE_Single_C.cpp...
> Generating docs for file Assemble_PDE_System_1D.cpp...
> Generating docs for file Assemble_PDE_System_2D.cpp...
> Generating docs for file Assemble_PDE_System_2D.cpp...
> Generating docs for file Assemble_PDE_System_3D.cpp...
> Generating docs for file Assemble_PDE_System_3D.cpp...
> Generating docs for file Assemble_PDE_System_C.cpp...
> Generating docs for file Assert.h...
> Generating docs for file BiCGStab.cpp...
> Generating docs for file BinaryDataReadyOps.cpp...
> Generating docs for file BinaryDataReadyOps.h...
> Generating docs for file BlockOps.h...
> Generating docs for file blocktools.cpp...
> Generating docs for file blocktools.h...
> Generating docs for file blocktools2.cpp...
> Generating docs for file Brick.cpp...
> Generating docs for file Brick.cpp...
> Generating docs for file Brick.h...
> Generating docs for file Brick.h...
> Generating docs for file BrickGradients.cpp...
> Generating docs for file BrickIntegrals.cpp...
> Generating docs for file BrickReductions.cpp...
> Generating docs for file Coupler.cpp...
> Generating docs for file Coupler.h...
> Generating docs for file CrossDomainCoupler.cpp...
> Generating docs for file CrossDomainCoupler.h...
> Generating docs for file Data.cpp...
> Generating docs for file Data.h...
> Generating docs for file DataAbstract.cpp...
> Generating docs for file DataAbstract.h...
> Generating docs for file DataConstant.cpp...
> Generating docs for file DataConstant.h...
> Generating docs for file DataEmpty.cpp...
> Generating docs for file DataEmpty.h...
> Generating docs for file DataException.h...
> Generating docs for file DataExpanded.cpp...
> Generating docs for file DataExpanded.h...
> Generating docs for file DataFactory.cpp...
> Generating docs for file DataFactory.h...
> Generating docs for file DataLazy.cpp...
> Generating docs for file DataLazy.h...
> Generating docs for file DataReady.cpp...
> Generating docs for file DataReady.h...
> Generating docs for fi
> Chapter 2.
>
> Underfull \hbox (badness 10000) in paragraph at lines 7--7
> []\OT1/ptm/m/n/10 Figure 2.1: Mag-netic anomaly data in $\OML/cmm/m/it/10 nT$ \
> OT1/ptm/m/n/10 from West-ern Queens-land, Aus-tralia (file
> [25 [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map]} [26 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//QLDWestMagneticDataPlot.png]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cop
> yrights.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
>
> LaTeX Warning: Reference `fig:abconds' on page 61 undefined on input line 347.
>
> [61
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)pdfTeX warning (ext4): destination with the same identifier (name{figure.6.3
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.392 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex08babc.png)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/doc
> guide.tex [2]) [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
> [4]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cur
> rentdev.tex [5]) [6]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.toc [7] [8]le DataTagged.cpp...
> Generating docs for file DataTagged.h...
> Generating docs for file DataTypes.cpp...
> Generating docs for file DataTypes.h...
> Generating docs for file DataVar.cpp...
> Generating docs for file DataVar.h...
> Generating docs for file DataVector.cpp...
> Generating docs for file DataVector.h...
> Generating docs for file DataVectorAlt.cpp...
> Generating docs for file DataVectorAlt.h...
> Generating docs for file DataVectorOps.cpp...
> Generating docs for file DataVectorOps.h...
> Generating docs for file DataVectorTaipan.cpp...
> Generating docs for file DataVectorTaipan.h...
> Generating docs for file DefaultAssembler2D.cpp...
> Generating docs for file DefaultAssembler2D.cpp...
> Generating docs for file DefaultAssembler2D.h...
> Generating docs for file DefaultAssembler2D.h...
> Generating docs for file DefaultAssembler3D.cpp...
> Generating docs for file DefaultAssembler3D.cpp...
> Generating docs for file DefaultAssembler3D.h...
> Generating docs for file DefaultAssembler3D.h...
> Generating docs for file Distribution.h...
> Generating docs for file Dodgy.cpp...
> Generating docs for file Dodgy.h...
> Generating docs for file DomainChunk.h...
> Generating docs for file DomainException.h...
> Generating docs for file DomainFactory.cpp...
> Generating docs for file DomainFactory.cpp...
> Generating docs for file DomainFactory.h...
> Generating docs for file DomainFactory.h...
> Generating docs for file domainhelpers.cpp...
> Generating docs for file domainhelpers.cpp...
> Generating docs for file domainhelpers.h...
> Generating docs for file domainhelpers.h...
> Generating docs for file Dudley.h...
> Generating docs for file dudleycpp.cpp...
> Generating docs for file DudleyDomain.cpp...
> Generating docs for file DudleyDomain.h...
> Generating docs for file DudleyException.h...
> Generating docs for file DudleyVersion.h...
> Generating docs for file ElementData.h...
> Generating docs for file ElementFile.cpp...
> Generating docs for file ElementFile.cpp...
> Generating docs for file ElementFile.h...
> Generating docs for file ElementFile.h...
> Generating docs for file ElementFile_createColoring.cpp...
> Generating docs for file ElementFile_distributeByRankOfDOF.cpp...
> Generating docs for file ElementFile_jacobians.cpp...
> Generating docs for file ElementFile_jacobians.cpp...
> Generating docs for file ElementType.h...
> Generating docs for file ES_optype.cpp...
> Generating docs for file ES_optype.h...
> Generating docs for file escriptcpp.cpp...
> Generating docs for file EscriptDataset.cpp...
> Generating docs for file EscriptDataset.h...
> Generating docs for file EscriptParams.cpp...
> Generating docs for file EscriptParams.h...
> Generating docs for file EsysException.h...
> Generating docs for file EsysMPI.cpp...
> Generating docs for file EsysMPI.h...
> Generating docs for file ExceptionTranslators.cpp...
> Generating docs for file ExceptionTranslators.h...
> Generating docs for file FCT_Solver.cpp...
> Generating docs for file FCT_Solver.h...
> Generating docs for file FileWriter.h...
> Generating docs for file Finley.h...
> Generating docs for file finleycpp.cpp...
> Generating docs for file FinleyDomain.cpp...
> Generating docs for file FinleyDomain.cpp...
> Generating docs for file FinleyDomain.h...
> Generating docs for file FinleyDomain.h...
> Generating docs for file FinleyElements.cpp...
> Generating docs for file FinleyElements.h...
> Generating docs for file FinleyException.h...
> Generating docs for file FinleyNodes.cpp...
> Generating docs for file FinleyNodes.h...
> Generating docs for file FinleyVersion.h...
> Generating docs for file FluxLimiter.cpp...
> Generating docs for file FluxLimiter.h...
> Generating docs for file Functions.cpp...
> Generating docs for file Functions.h...
> Generating docs for file FunctionSpace.cpp...
> Generating docs for file FunctionSpace.h...
> Generating docs for file FunctionSpaceException.h...
> Generating docs for file FunctionSpaceFactory.cpp...
> Generating docs for file FunctionSpaceFactory.h...
> Generating docs for file GMRES.cpp...
> Generating docs for file GMRES2.cpp...
> Generating docs for file ILU.cpp...
> Generating docs for file index.h...
> Generating docs for file IndexList.cpp...
> Generating docs [9]) [10]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.tex
> Chapter 1.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fir
> ststep.tex>] [62pdfTeX warning (ext4): destination
> with the same identifier (name{figure.6.4}) has been already used, duplicate ig
> nored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.392 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex08sw060.png (PNG copy)> </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex08sw320.png (PNG
> copy)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/
> cookbook/figures/ex08sw660.png (PNG copy)> </<<BUILDDIR>>/python
> -escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex08sw880.png (PNG copy)>] [11 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//FirstStepDomain.pdf>]for file IndexList.cpp...
> Generating docs for file IndexList.h...
> Generating docs for file IndexList.h...
> Generating docs for file IndexList.h...
> Generating docs for file lagrange_functions.h...
> Generating docs for file LameAssembler2D.cpp...
> Generating docs for file LameAssembler2D.h...
> Generating docs for file LameAssembler3D.cpp...
> Generating docs for file LameAssembler3D.h...
> Generating docs for file LapackInverseHelper.cpp...
> Generating docs for file LapackInverseHelper.h...
> Generating docs for file Mesh_addPoints.cpp...
> Generating docs for file Mesh_distributeByRankOfDOF.cpp...
> Generating docs for file Mesh_findMatchingFaces.cpp...
> Generating docs for file Mesh_getPasoPattern.cpp...
> Generating docs for file Mesh_getPattern.cpp...
> Generating docs for file Mesh_getTrilinosGraph.cpp...
> Generating docs for file Mesh_glueFaces.cpp...
> Generating docs for file Mesh_hex20.cpp...
> Generating docs for file Mesh_hex8.cpp...
> Generating docs for file Mesh_joinFaces.cpp...
> Generating docs for file Mesh_merge.cpp...
> Generating docs for file Mesh_optimizeDOFDistribution.cpp...
> Generating docs for file Mesh_optimizeDOFDistribution.cpp...
> Generating docs for file Mesh_optimizeDOFLabeling.cpp...
> Generating docs for file Mesh_read.cpp...
> Generating docs for file Mesh_read.cpp...
> Generating docs for file Mesh_readGmsh.cpp...
> Generating docs for file Mesh_readGmsh.cpp...
> Generating docs for file Mesh_rec4.cpp...
> Generating docs for file Mesh_rec8.cpp...
> Generating docs for file Mesh_resolveNodeIds.cpp...
> Generating docs for file Mesh_tet4.cpp...
> Generating docs for file Mesh_tri3.cpp...
> Generating docs for file Mesh_write.cpp...
> Generating docs for file Mesh_write.cpp...
> Generating docs for file MINRES.cpp...
> Generating docs for file MKL.cpp...
> Generating docs for file MKL.h...
> Generating docs for file mmio.cpp...
> Generating docs for file mmio.h...
> Generating docs for file MPIDataReducer.cpp...
> Generating docs for file MPIDataReducer.h...
> Generating docs for file MPIScalarReducer.cpp...
> Generating docs for file MPIScalarReducer.h...
> Generating docs for file MultiBrick.cpp...
> Generating docs for file MultiBrick.h...
> Generating docs for file MultiRectangle.cpp...
> Generating docs for file MultiRectangle.h...
> Generating docs for file NCHelper.cpp...
> Generating docs for file NCHelper.h...
> Generating docs for file NewtonGMRES.cpp...
> Generating docs for file NodeData.h...
> Generating docs for file NodeFile.cpp...
> Generating docs for file NodeFile.cpp...
> Generating docs for file NodeFile.h...
> Generating docs for file NodeFile.h...
> Generating docs for file NodeFile_createDenseLabelings.cpp...
> Generating docs for file NodeFile_createMappings.cpp...
> Generating docs for file NodeFile_createTrilinosGraph.cpp...
> Generating docs for file NodeFile_gather.cpp...
> Generating docs for file NodeMapping.h...
> Generating docs for file NodeMapping.h...
> Generating docs for file NonReducedVariable.cpp...
> Generating docs for file NonReducedVariable.h...
> Generating docs for file NullDomain.cpp...
> Generating docs for file NullDomain.h...
> Generating docs for file Options.cpp...
> Generating docs for file Options.h...
> Generating docs for file Paso.h...
> Generating docs for file PasoException.h...
> Generating docs for file PasoUtil.cpp...
> Generating docs for file PasoUtil.h...
> Generating docs for file Pattern.cpp...
> Generating docs for file Pattern.h...
> Generating docs for file Pattern_mis.cpp...
> Generating docs for file Pattern_reduceBandwidth.cpp...
> Generating docs for file PCG.cpp...
> Generating docs for file performance.cpp...
> Generating docs for file performance.h...
> Generating docs for file Pointers.h...
> Generating docs for file Preconditioner.cpp...
> Generating docs for file Preconditioner.h...
> Generating docs for file pyerr.cpp...
> Generating docs for file pyerr.h...
> Generating docs for file Quadrature.cpp...
> Generating docs for file Quadrature.h...
> Generating docs for file Random.cpp...
> Generating docs for file Random.h...
> Generating docs for file ReactiveSolver.cpp...
> Generating docs for file ReactiveSolver.h...
> Generating docs for file Rectangle.cpp...
> Generating doc
> Underfull \hbox (badness 10000) in paragraph at lines 395--399
>
>
> LaTeX Warning: Reference `fig:ex08cres' on page 63 undefined on input line 430.
>
>
> ) [63
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 12 undefined on input line 148
> .
>
> [12pdfTeX warning (ext4): destination with the same identifier (name{figure.6
> .5}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.125 \chapter
> {3D Seismic Wave Propagation} </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/gmsh-example08c.png (PNG c
> opy)>] [64pdfTeX warning (ext4): destination with the same identifier (name{fig
> ure.6.6}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.125 \chapter
> {3D Seismic Wave Propagation} </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex08c2601.png (PNG copy)]>]
> Chapter 7.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example09.tex (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty> </<<BUILDDIR>>/
> python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagContourMu01.p
> ng (PNG copy)>])
> Underfull \hbox (badness 10000) in paragraph at lines 17--21
>
> [65]s for file Rectangle.cpp...
> Generating docs for file Rectangle.h...
> Generating docs for file Rectangle.h...
> Generating docs for file RectangleGradients.cpp...
> Generating docs for file RectangleIntegrals.cpp...
> Generating docs for file RectangleReductions.cpp...
> Generating docs for file ReferenceElements.cpp...
> Generating docs for file ReferenceElements.h...
> Generating docs for file ReferenceElementSets.h...
> Generating docs for file RILU.cpp...
> Generating docs for file Ripley.h...
> Generating docs for file ripleycpp.cpp...
> Generating docs for file RipleyDomain.cpp...
> Generating docs for file RipleyDomain.cpp...
> Generating docs for file RipleyDomain.h...
> Generating docs for file RipleyDomain.h...
> Generating docs for file RipleyElements.cpp...
> Generating docs for file RipleyElements.h...
> Generating docs for file RipleyException.h...
> Generating docs for file RipleyNodes.cpp...
> Generating docs for file RipleyNodes.h...
> Generating docs for file RipleySystemMatrix.h...
> Generating docs for file SchurComplement.cpp...
> Generating docs for file ScriptMPI.cpp...
> Generating docs for file ScriptMPIredirect.cpp...
> Generating docs for file ShapeFunctions.cpp...
> Generating docs for file ShapeFunctions.h...
> Generating docs for file ShapeTable.cpp...
> Generating docs for file ShapeTable.h...
> Generating docs for file SharedComponents.h...
> Generating docs for file Smoother.cpp...
> Generating docs for file solve.cpp...
> Generating docs for file Solver.cpp...
> Generating docs for file Solver.h...
> Generating docs for file Solver_Function.cpp...
> Generating docs for file SolverOptions.cpp...
> Generating docs for file SolverOptions.h...
> Generating docs for file SparseMatrix.cpp...
> Generating docs for file SparseMatrix.h...
> Generating docs for file SparseMatrix_getSubmatrix.cpp...
> Generating docs for file SparseMatrix_MatrixMatrix.cpp...
> Generating docs for file SparseMatrix_MatrixMatrixTranspose.cpp...
> Generating docs for file SparseMatrix_MatrixVector.cpp...
> Generating docs for file SparseMatrix_nullifyRowsAndCols.cpp...
> Generating docs for file SparseMatrix_saveHB.cpp...
> Generating docs for file Speckley.h...
> Generating docs for file speckleycpp.cpp...
> Generating docs for file SpeckleyDomain.cpp...
> Generating docs for file SpeckleyDomain.cpp...
> Generating docs for file SpeckleyDomain.h...
> Generating docs for file SpeckleyDomain.h...
> Generating docs for file SpeckleyElements.cpp...
> Generating docs for file SpeckleyElements.h...
> Generating docs for file SpeckleyException.h...
> Generating docs for file SpeckleyNodes.cpp...
> Generating docs for file SpeckleyNodes.h...
> Generating docs for file SplitWorld.cpp...
> Generating docs for file SplitWorld.h...
> Generating docs for file SplitWorldException.h...
> Generating docs for file SubWorld.cpp...
> Generating docs for file SubWorld.h...
> Generating docs for file system_dep.h...
> Generating docs for file system_dep.h...
> Generating docs for file system_dep.h...
> Generating docs for file SystemMatrix.cpp...
> Generating docs for file SystemMatrix.h...
> Generating docs for file SystemMatrix_copyRemoteCoupleBlock.cpp...
> Generating docs for file SystemMatrix_debug.cpp...
> Generating docs for file SystemMatrix_extendedRows.cpp...
> Generating docs for file SystemMatrix_loadMM.cpp...
> Generating docs for file SystemMatrix_MatrixVector.cpp...
> Generating docs for file SystemMatrix_mergeMainAndCouple.cpp...
> Generating docs for file SystemMatrixException.h...
> Generating docs for file SystemMatrixPattern.cpp...
> Generating docs for file SystemMatrixPattern.h...
> Generating docs for file SystemMatrixPattern_unrollBlocks.cpp...
> Generating docs for file Taipan.cpp...
> Generating docs for file Taipan.h...
> Generating docs for file TestDomain.cpp...
> Generating docs for file TestDomain.h...
> Generating docs for file TFQMR.cpp...
> Generating docs for file Transport.cpp...
> Generating docs for file Transport.h...
> Generating docs for file Transport_solve.cpp...
> Generating docs for file TransportProblemException.h...
> Generating docs for file UMFPACK.cpp...
> Generating docs for file UMFPACK.h...
> Generating docs for file Util.cpp...
> Generating docs for file [13 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FirstStepMesh.pdf>]/<<PKGBUILDDIR>>/dudley/src/DomainFactory.cpp:689: warning: The following parameters of dudley::brick(escript::JMPI jmpi, dim_t n0=1, dim_t n1=1, dim_t n2=1, int order=1, double l0=1.0, double l1=1.0, double l2=1.0, bool periodic0=false, bool periodic1=false, bool periodic2=false, int integrationOrder=-1, int reducedIntegrationOrder=-1, bool useElementsOnFace=false, bool useFullElementOrder=false, bool optimize=false) are not documented:
> parameter 'periodic0'
> parameter 'periodic1'
> parameter 'periodic2'
> parameter 'useElementsOnFace'
> parameter 'useFullElementOrder'
> ) [66 [27]] [28 </<<PKGBUILDDIR>>/debi
> an/tmp3/posix/doc/inversion/figures//QLDMagContourMu0001.png (PNG copy)> </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figu
> res//QLDMagContourMu001.png (PNG copy)> </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagContourMu1.png (PNG co
> py)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inv
> ersion/figures//QLDMagContourMu10.png (PNG copy)>] [29 </build/python-escript-G
> iQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu
> 0001.png (PNG copy)> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/inversion/figures//QLDMagDepthMu001.png (PNG copy)> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figures//QLD
> MagDepthMu01.png (PNG copy)> </<<PKGBUILDDIR>>/d
> ebian/tmp3/posix/doc/inversion/figures//QLDMagDepthMu1.png (PNG copy)> </build/
> python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/inversion/figure
> s//QLDMagDepthMu10.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.tex [30]
> Chapter 3.
> ) [31] [67]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.tex [68 </<<PKGBUILDDIR>>/debian/tmp3
> /posix/doc/cookbook/figures/gmsh-example09m.png (PNG copy)> </build/python-escr
> ipt-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/gmsh-examp
> le09msh2d.png (PNG copy)> </<<PKGBUILDDIR>>/debi
> an/tmp3/posix/doc/cookbook/figures/gmsh-example09msh3d.png (PNG copy) [14 [32]>]]/<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h:95: warning: argument 'fileName' of command @param is not found in the argument list of dudley::DudleyDomain::read(escript::JMPI mpiInfo, const std::string &filename, bool optimize)
> /<<PKGBUILDDIR>>/dudley/src/DudleyDomain.h:103: warning: The following parameter of dudley::DudleyDomain::read(escript::JMPI mpiInfo, const std::string &filename, bool optimize) is not documented:
> parameter 'filename'
>
> [69pdfTeX warning (ext4): destination with the same identifier (name{figure.7.1
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.186 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/gmsh-example09lc.png (PNG copy)>]
> Chapter 4.
> [33]
>
> LaTeX Warning: Citation `matplotlib' on page 15 undefined on input line 312.
>
>
> LaTeX Warning: Citation `mayavi' on page 15 undefined on input line 317.
>
>
> LaTeX Warning: Citation `VisIt' on page 15 undefined on input line 317.
>
> [15] [34 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//HalfSphere.png
> Underfull \hbox (badness 10000) in paragraph at lines 202--209
>
>
> Overfull \hbox (25.36078pt too wide) in paragraph at lines 222--223
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> ) [70] [71 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/cookbook/figures/ex09b00201.png (PNG copy)> </<<BUILDDIR>>/py
> thon-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex09b00341.png (PNG cop
> y)> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cook
> book/figures/ex09b00440.png (PNG copy)>] [72]
> Chapter 8.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example10.tex
>
> Package natbib Warning: Citation `Blakely1995' on page 73 undefined on input li
> ne 27.
>
>
> LaTeX Warning: Reference `eqn:poisson' on page 73 undefined on input line 33.
>
>
> LaTeX Warning: Reference `eqn:ex10a' on page 73 undefined on input line 42.
>
>
> LaTeX Warning: Reference `eqn:poisson' on page 73 undefined on input line 46.
>
> [73] [74] [16 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /user/figures//FirstStepResultMATPLOTLIB.pdf>]/<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h:1380: warning: argument 'shape' of command @param is not found in the argument list of escript::reductionOpVector(const DataTypes::RealVectorType &left, const DataTypes::ShapeType &leftShape, DataTypes::RealVectorType::size_type offset, BinaryFunction operation, DataTypes::real_t initial_value)
> /<<PKGBUILDDIR>>/escriptcore/src/DataVectorOps.h:1397: warning: The following parameter of escript::reductionOpVector(const DataTypes::RealVectorType &left, const DataTypes::ShapeType &leftShape, DataTypes::RealVectorType::size_type offset, BinaryFunction operation, DataTypes::real_t initial_value) is not documented:
> parameter 'leftShape'
>
>
> LaTeX Warning: Citation `matplotlib' on page 17 undefined on input line 408.
>
>
> LaTeX Warning: Citation `mayavi' on page 17 undefined on input line 426.
>
>
> LaTeX Warning: Citation `VisIt' on page 17 undefined on input line 426.
>
> [17
> Underfull \hbox (badness 10000) in paragraph at lines 93--97
>
>
> LaTeX Warning: Reference `fig:mayavi2openfile' on page 75 undefined on input li
> ne 132.
>
>
> LaTeX Warning: Reference `fig:mayavi2data' on page 75 undefined on input line 1
> 35.
>
>
> LaTeX Warning: Reference `fig:mayavi2cell2point' on page 75 undefined on input
> line 143.
>
>
> LaTeX Warning: Reference `fig:ex10pot' on page 75 undefined on input line 147.
>
> [75 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//FirstStepResult.pdf>]] [76pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.8.1}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.177 \clearpage
> pdfTeX warning (ext4): destination with the same identifier (na
> me{figure.8.2}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.177 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/mayavi2_openfile.png)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dif
> fusion.tex [18 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//DiffusionDomain.pdf>] [19]>]) [35 [20] [36]] [37] [38]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.tex/<<PKGBUILDDIR>>/escriptcore/src/Data.h:1600: warning: The following parameter of escript::Data::getDataAtOffsetRO(DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy) is not documented:
> parameter 'dummy'
> /<<PKGBUILDDIR>>/escriptcore/src/Data.h:654: warning: The following parameter of escript::Data::getSampleDataByTag(int tag, DataTypes::real_t dummy=0) is not documented:
> parameter 'dummy'
>
> Chapter 5.
> [39/<<PKGBUILDDIR>>/escriptcore/src/Data.h:611: warning: The following parameter of escript::Data::getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const is not documented:
> parameter 'dummy'
> ]/<<PKGBUILDDIR>>/escriptcore/src/Data.h:625: warning: The following parameter of escript::Data::getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) is not documented:
> parameter 'dummy'
> [21]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Drivers.tex [40 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/inversion/figures//classdep.pdf>] [41] [22 [42]/<<PKGBUILDDIR>>/escriptcore/src/DataAbstract.h:96: warning: The following parameter of escript::DataAbstract::DataAbstract(const FunctionSpace &what, const ShapeType &shape, bool isDataEmpty=false, bool isCplx=false) is not documented:
> parameter 'isCplx'
> ]> </<<BUILDDIR>>/p
> ython-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/mayavi2_data.png)) [43]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.tex [44])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wav
> e.tex
> Chapter 6.
> [45] [46 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /inversion/figures//cartesian.pdf [23 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//DiffusionRes1.pdf> </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes16.pdf> </build/python-esc
> ript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes
> 32.pdf> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/
> user/figures//DiffusionRes48.pdf>] [24>] </<<BUILDDIR>>/python-esc
> ript-5.5/debian/tmp3/posix/doc/user/figures//waveu.pdf, page is rotated 90 degr
> ees>] [47 </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/inversion/figures//geosphir.png [25 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//wavea.pdf, page is rotated 90 degrees>] [26]/<<PKGBUILDDIR>>/escriptcore/src/DataTagged.h:419: warning: The following parameter of escript::DataTagged::getDataByTagRW(int tag, DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy=0) is not documented:
> parameter 'dummy'
> /<<PKGBUILDDIR>>/escriptcore/src/DataTagged.h:514: warning: The following parameter of escript::DataTagged::getDefaultValueRW(DataTypes::RealVectorType::size_type i, DataTypes::real_t dummy=0) is not documented:
> parameter 'dummy'
> >]>]
> [77pdfTeX warning (ext4): destination with the same identifier (name{figure.8.3
> }) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.177 \clearpage
> pdfTeX warning (ext4): destination with the same identifier (na
> me{figure.8.4}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.177 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/mayavi2_cell2point.png [27]
> Underfull \hbox (badness 10000) in paragraph at lines 261--261
> [][][]\OT1/ptm/m/n/8 In gen-eral any or-thog-o-nal co-or-di-nate trans-for-ma-t
> ion can be sup-ported by build-ing sub-classes of the
> [48]
>
> LaTeX Warning: Citation `GNUPLOT' on page 28 undefined on input line 346.
>
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [49
>
> LaTeX Warning: Citation `GNUPLOT' on page 28 undefined on input line 359.
>
> [28] </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//Wave11.pdf> </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//Wave22.pdf> </<<BUILDDIR>>/python-es
> cript-5.5/debian/tmp3/posix/doc/user/figures//Wave28.pdf)> </build/python-escrip
> t-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave32.pdf> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//Wave36.pdf>] [50]/<<PKGBUILDDIR>>/escriptcore/src/EsysMPI.h:93: warning: explicit link request to 'CPUs' could not be resolved
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.tex
> Chapter 7.
> [51
>
> LaTeX Warning: Citation `SCIPY' on page 29 undefined on input line 396.
>
>
> LaTeX Warning: Citation `SCIPY' on page 29 undefined on input line 398.
>
> )]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/hea
> tedblock.tex [29 </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/user/figures//WavePC.pdf, page is rotated 90 degrees>] [52] [30] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [53])
> [54]/<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.h:529: warning: argument 'Hermitian' of command @param is not found in the argument list of escript::SolverBuddy::setHermitian(bool hermitian)
> /<<PKGBUILDDIR>>/escriptcore/src/SolverOptions.h:534: warning: The following parameter of escript::SolverBuddy::setHermitian(bool hermitian) is not documented:
> parameter 'hermitian'
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.tex
> Chapter 8.
> [55] [31])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kesflow.tex [56] [32 </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//HeatedBlock.pdf>] [57] [58]Util.cpp...
> Generating docs for file Util.h...
> Generating docs for file Util.h...
> Generating docs for file Utils.cpp...
> Generating docs for file Utils.h...
> Generating docs for file VisItControl.cpp...
> Generating docs for file VisItControl.h...
> Generating docs for file VisItData.cpp...
> Generating docs for file VisItData.h...
> Generating docs for file vtkCellType.h...
> Generating docs for file WaveAssembler2D.cpp...
> Generating docs for file WaveAssembler2D.cpp...
> Generating docs for file WaveAssembler2D.h...
> Generating docs for file WaveAssembler2D.h...
> Generating docs for file WaveAssembler3D.cpp...
> Generating docs for file WaveAssembler3D.cpp...
> Generating docs for file WaveAssembler3D.h...
> Generating docs for file WaveAssembler3D.h...
> Generating docs for file weipa.h...
> Generating docs for file weipacpp.cpp...
> Generating docs for file WeipaException.h...
> Generating docs for file WrappedArray.cpp...
> Generating docs for file WrappedArray.h...
> Generating page documentation...
> Generating group documentation...
> Generating class documentation...
> Generating docs for compound Block...
> Generating docs for compound Block2...
> Generating docs for compound BlockGrid...
> Generating docs for compound BlockGrid2...
> Generating docs for compound message...
> Generating namespace index...
> Generating docs for namespace dudley
> Generating docs for compound dudley::AssembleParameters...
> Generating docs for compound dudley::DudleyDomain...
> Generating docs for compound dudley::DudleyException...
> Generating docs for compound dudley::ElementFile...
> Generating docs for compound dudley::ElementFile_Jacobians...
> Generating docs for compound dudley::NodeFile...
> Generating docs for compound dudley::NodeMapping...
> Generating docs for namespace dudley::util
> Generating docs for namespace escript
> Generating docs for compound escript::AbsMax...
> Generating docs for compound escript::AbstractContinuousDomain...
> Generating docs for compound escript::AbstractDomain...
> Generating docs for compound escript::AbstractReducer...
> Generating docs for compound escript::AbstractSystemMatrix...
> Generating docs for compound escript::AbstractTransportProblem...
> Generating docs for compound escript::AssertException...
> Generating docs for compound escript::Data...
> Generating docs for compound escript::DataAbstract...
> Generating docs for compound escript::DataConstant...
> Generating docs for compound escript::DataEmpty...
> Generating docs for compound escript::DataException...
> Generating docs for compound escript::DataExpanded...
> Generating docs for compound escript::DataLazy...
> Generating docs for compound escript::DataReady...
> Generating docs for compound escript::DataTagged...
> Generating docs for compound escript::Distribution...
> Generating docs for compound escript::DomainException...
> Generating docs for compound escript::EscriptParams...
> Generating docs for compound escript::EsysException...
> Generating docs for compound escript::FileWriter...
> Generating docs for compound escript::FMax...
> Generating docs for compound escript::FMin...
> Generating docs for compound escript::FunctionSpace...
> Generating docs for compound escript::FunctionSpaceException...
> Generating docs for compound escript::IndexList...
> Generating docs for compound escript::IOError...
> Generating docs for compound escript::JMPI_...
> Generating docs for compound escript::LapackInverseHelper...
> Generating docs for compound escript::MPIDataReducer...
> Generating docs for compound escript::MPIScalarReducer...
> Generating docs for compound escript::NoCOMM_WORLD...
> Generating docs for compound escript::NonReducedVariable...
> Generating docs for compound escript::NotImplementedError...
> Generating docs for compound escript::NullDomain...
> Generating docs for compound escript::SolverBuddy...
> Generating docs for compound escript::SplitWorld...
> Generating docs for compound escript::SplitWorldException...
> Generating docs for compound escript::SubWorld...
> Generating docs for compound escript::SystemMatrixException...
> Generating docs for compound escript::Taipan...
> Generating docs for nested compound escript::Taipan::Taipan_MemTable. [59])
>
> LaTeX Warning: Citation `LBB' on page 33 undefined on input line 106.
>
> [33 [60]]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.tex
> Chapter 9.
> [61 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inve
> rsion/figures//domainbuilder.pdf>] [62] [63] [64] [65]))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sli
> p.tex [66]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.tex [34]
> Chapter 10.
> [67 [35] </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//stokes-fluid-t01.pdf> </<<BUILDDIR>>/python
> -escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t10.pdf> </build/
> python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//st
> okes-fluid-t20.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//stokes-fluid-t30.pdf> </<<BUILDDIR>>/p
> ython-escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t40.pdf> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//stokes-fluid-t50.pdf>] [68])> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex10apot.png (PNG co
> py)>] [69]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.tex [70]
> Chapter 11.
> [71] [36 </<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/user/figures//Slip1.pdf>]) [72]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.tex
> Chapter 12.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardGravity.tex/<<PKGBUILDDIR>>/finley/src/FinleyDomain.h:144: warning: argument 'l0' of command @param is not found in the argument list of finley::FinleyDomain::createRec4(dim_t NE0, dim_t NE1, double L0, double L1, bool periodic0, bool periodic1, int order, int reducedOrder, bool useElementsOnFace, bool optimize, escript::JMPI jmpi)
> /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h:144: warning: argument 'l1' of command @param is not found in the argument list of finley::FinleyDomain::createRec4(dim_t NE0, dim_t NE1, double L0, double L1, bool periodic0, bool periodic1, int order, int reducedOrder, bool useElementsOnFace, bool optimize, escript::JMPI jmpi)
> /<<PKGBUILDDIR>>/finley/src/FinleyDomain.h:159: warning: The following parameters of finley::FinleyDomain::createRec4(dim_t NE0, dim_t NE1, double L0, double L1, bool periodic0, bool periodic1, int order, int reducedOrder, bool useElementsOnFace, bool optimize, escript::JMPI jmpi) are not documented:
> parameter 'L0'
> parameter 'L1'
>
> Underfull \hbox (badness 10000) in paragraph at lines 180--184
>
>
> LaTeX Warning: Reference `fig:ex10bpot' on page 78 undefined on input line 205.
>
>
>
> LaTeX Warning: Reference `fig:ex10bpot2' on page 78 undefined on input line 215
> .
>
>
> LaTeX Warning: Reference `fig:ex10p' on page 78 undefined on input line 218.
>
> [78] [79pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.8.5}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.246 \clearpage
> pdfTeX warning (ext4): destination with the same identifier (na
> me{figure.8.6}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.246 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex10bpot.png (PNG copy)> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex10bpot2.png (PNG
> copy)> [73] [80pdfTeX warning (ext4): destination with the same identifier (name{fi
> gure.8.7}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.246 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex10p_boundeff.pdf]>] [74]) [37
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagnetic.tex] [75])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dir
> ac.tex [76]
> Underfull \hbox (badness 10000) in paragraph at lines 275--281
>
> [81] [77])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardMagneticIntensity.tex [38 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//Slip2.png [78] [79])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardSelfMagnetic.tex [80]
>
> LaTeX Warning: Reference `fig:ex10mgeo' on page 82 undefined on input line 348.
>
>
>
> LaTeX Warning: Reference `fig:ex10mmsh' on page 82 undefined on input line 379.
>
>
> [82] [81 [83pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.8.8}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.406 \clearpage
> pdfTeX warning (ext4): destination with the same identifier (na
> me{figure.8.9}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.406 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex10m_geo.png (PNG copy)> </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/cookbook/figures/ex10m_msh.png (PNG
> copy)>]])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Forward2DMTTEMode.tex [82]
>
> LaTeX Warning: Reference `fig:ex10q boundeff' on page 84 undefined on input lin
> e 427.
>
>
> LaTeX Warning: Reference `fig:ex10q boundeff zoom' on page 84 undefined on inpu
> t line 427.
>
>
> LaTeX Warning: Reference `fig:ex10q boundeff' on page 84 undefined on input lin
> e 443.
>
> [84pdfTeX warning (ext4): destination with the same identifier (name{figure.8.1
> 0}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.449 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex10q_boundeff.pdf>] [85pdfTeX warning (ext4): destin
> ation with the same identifier (name{figure.8.11}) has been already used, dupli
> cate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.449 \clearpage
> </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/cookbook/figures/ex10q_boundeff_zoom.pdf>]) [86] [83]
> Chapter 9.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /example11.tex)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardDCRES.tex [84
>
> Package natbib Warning: Citation `Loke2004' on page 87 undefined on input line
> 24.
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 61--62
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 61--62
>
>
> Package natbib Warning: Citation `Farias2010' on page 87 undefined on input lin
> e 73.
>
>
> Package natbib Warning: Citation `Honig2007' on page 87 undefined on input line
> 73.
>
> )]
> No file cookbook.bbl.
>
> Package natbib Warning: There were undefined citations.
>
> [87] [88pdfTeX warning (ext4): destination with the same identifier (name{figur
> e.9.1}) has been already used, duplicate ignored
> <argument> ...shipout:D \box_use:N \l_shipout_box
>
> l.141 \end{document}
> </<<PKGBUILDDIR>>/debian/tm
> p3/posix/doc/cookbook/figures/ex11cstreamline.png (PNG copy)>] [85
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/cookbook
> /cookbook.aux])
>
> Package rerunfilecheck Warning: File `cookbook.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information)pdfTeX warning (dest): name
> {Hfootnote.35} has been referenced but does not exist, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.34} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.33} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.32} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.31} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.30} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.29} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.28} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.27} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.26} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.25} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.24} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.23} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.22} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.21} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.20} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.19} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.18} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.17} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.16} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.15} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.14} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.13} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.12} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.11} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.10} has been referenced but does not exis
> t, replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.9} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.8} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.7} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.6} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.5} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.4} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.3} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.2} has been referenced but does not exist
> , replaced by a fixed one
>
> pdfTeX warning (dest): name{Hfootnote.1} has been reference [86]))d but does not exist
> , replaced by a fixed one
>
> {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} [87]</usr/share/texlive/
> texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb> [88]</usr/share/texlive/texmf-
> dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.ind</usr/share/texlive/texmf-dist/f
> onts/type1/public/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-dist/fonts/ty
> pe1/public/amsfonts/cm/cmmi6.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
> lic/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmmi8.pfb> [89</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmr10.pfb])> [90]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr6.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.bbl></us
> r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
> texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
> texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-
> dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb [91></usr/share/texlive/texmf-dist/fo
> nts/type1/public/amsfonts/cm/cmsy7.pfb]></usr/share/texlive/texmf-dist/fonts/typ
> e1/public/amsfonts/cm/cmsy8.pfb)></usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/symbols/msam10.pfb [92]>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/inversion.aux</usr/share/texlive/texmf-dist/fonts/type1/urw/c
> ourier/ucrb8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/intro.aux)>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookGravity.aux</usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a
> .pfb)>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookMagnetic.aux<)/usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookJointDUMMY.aux)</usr/s
> hare/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CookDcRes.aux)></usr/share/texlive
> /texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/IntroPart2.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Domains.aux>)</usr/share/texlive/texmf-dist
> /fonts/type1/urw/times/utmb8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Minimization.aux)></usr/share/texlive/texmf-dist/fonts/type1/ur
> w/times/utmbi8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/CostFunctions.aux)/<<PKGBUILDDIR>>/ripley/src/Brick.h:43: warning: The following parameters of ripley::Brick::Brick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr()) are not documented:
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> >
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/DataSources.aux)</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a
> .pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Regularization.aux)>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/Mapping.aux)</usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/inversio
> n/ForwardModels.aux>))
>
> Package rerunfilecheck Warning: File `inversion.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmbx7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex1
> 0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra/cmex7.
> pfb
> Output written on cookbook.pdf (88 pages, 4380265 bytes).
> Transcript written on cookbook.log.
> ></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>pdflatex returned an error, check the log file
> scons: *** [debian/tmp3/posix/doc/cookbook/cookbook.pdf] Error 1
> </
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.
> pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></u
> sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/shar
> e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texli
> ve/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic
> /uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb>
> </usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-
> dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type
> 1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utm
> r8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>/<<PKGBUILDDIR>>/ripley/src/MultiBrick.h:43: warning: The following parameters of ripley::MultiBrick::MultiBrick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr(), unsigned int subdivisions=1) are not documented:
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> parameter 'subdivisions'
>
> Output written on inversion.pdf (92 pages, 5275094 bytes).
> Transcript written on inversion.log.
> /<<PKGBUILDDIR>>/ripley/src/MultiRectangle.h:43: warning: The following parameters of ripley::MultiRectangle::MultiRectangle(dim_t n0, dim_t n1, double x0, double y0, double x1, double y1, int d0=-1, int d1=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr(), unsigned int subdivisions=1) are not documented:
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> parameter 'subdivisions'
> /<<PKGBUILDDIR>>/ripley/src/Rectangle.h:43: warning: The following parameters of ripley::Rectangle::Rectangle(dim_t n0, dim_t n1, double x0, double y0, double x1, double y1, int d0=-1, int d1=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr()) are not documented:
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> /<<PKGBUILDDIR>>/speckley/src/Brick.h:46: warning: The following parameters of speckley::Brick::Brick(int order, dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr()) are not documented:
> parameter 'order'
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> /<<PKGBUILDDIR>>/speckley/src/Rectangle.h:44: warning: The following parameters of speckley::Rectangle::Rectangle(int order, dim_t n0, dim_t n1, double x0, double y0, double x1, double y1, int d0=-1, int d1=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr()) are not documented:
> parameter 'order'
> parameter 'points'
> parameter 'tags'
> parameter 'tagnamestonums'
> parameter 'w'
> ..
> Generating docs for nested compound escript::Taipan::Taipan_StatTable...
> Generating docs for compound escript::TestDomain...
> Generating docs for compound escript::TransportProblemException...
> Generating docs for compound escript::ValueError...
> Generating docs for compound escript::WrappedArray...
> Generating docs for namespace escript::DataTypes
> Generating docs for compound escript::DataTypes::DataVectorAlt...
> Generating docs for compound escript::DataTypes::DataVectorTaipan...
> Generating docs for namespace escript::reducerstatus
> Generating docs for namespace finley
> Generating docs for compound finley::AssembleParameters...
> Generating docs for compound finley::ElementFile...
> Generating docs for compound finley::ElementFile_Jacobians...
> Generating docs for compound finley::FaceCenter...
> Generating docs for compound finley::FinleyDomain...
> Generating docs for compound finley::FinleyException...
> Generating docs for compound finley::NodeFile...
> Generating docs for compound finley::NodeMapping...
> Generating docs for compound finley::QuadInfo...
> Generating docs for compound finley::ReferenceElement...
> Generating docs for compound finley::ReferenceElementInfo...
> Generating docs for compound finley::ReferenceElementSet...
> Generating docs for compound finley::ShapeFunction...
> Generating docs for compound finley::ShapeFunctionInfo...
> Generating docs for namespace finley::util
> Generating docs for namespace paso
> Generating docs for compound paso::Connector...
> Generating docs for compound paso::Coupler...
> Generating docs for compound paso::DegreeAndIdx...
> Generating docs for compound paso::FCT_FluxLimiter...
> Generating docs for compound paso::FCT_Solver...
> Generating docs for compound paso::Function...
> Generating docs for compound paso::LinearSystem...
> Generating docs for compound paso::Options...
> Generating docs for compound paso::PasoException...
> Generating docs for compound paso::Pattern...
> Generating docs for compound paso::Performance...
> Generating docs for compound paso::Preconditioner...
> Generating docs for compound paso::Preconditioner_LocalSmoother...
> Generating docs for compound paso::Preconditioner_Smoother...
> Generating docs for compound paso::ReactiveSolver...
> Generating docs for compound paso::SharedComponents...
> Generating docs for compound paso::Solver_ILU...
> Generating docs for compound paso::Solver_RILU...
> Generating docs for compound paso::SparseMatrix...
> Generating docs for compound paso::SystemMatrix...
> Generating docs for compound paso::SystemMatrixPattern...
> Generating docs for compound paso::TransportProblem...
> Generating docs for compound paso::UMFPACK_Handler...
> Generating docs for namespace paso::util
> Generating docs for namespace ripley
> Generating docs for compound ripley::AbstractAssembler...
> Generating docs for compound ripley::Brick...
> Generating docs for compound ripley::DefaultAssembler2D...
> Generating docs for compound ripley::DefaultAssembler3D...
> Generating docs for compound ripley::DiracPoint...
> Generating docs for compound ripley::LameAssembler2D...
> Generating docs for compound ripley::LameAssembler3D...
> Generating docs for compound ripley::MultiBrick...
> Generating docs for compound ripley::MultiRectangle...
> Generating docs for compound ripley::ReaderParameters...
> Generating docs for compound ripley::Rectangle...
> Generating docs for compound ripley::RipleyDomain...
> Generating docs for compound ripley::RipleyException...
> Generating docs for compound ripley::SystemMatrix...
> Generating docs for compound ripley::WaveAssembler2D...
> Generating docs for compound ripley::WaveAssembler3D...
> Generating docs for namespace speckley
> Generating docs for compound speckley::AbstractAssembler...
> Generating docs for compound speckley::Brick...
> Generating docs for compound speckley::DefaultAssembler2D...
> Generating docs for compound speckley::DefaultAssembler3D...
> Generating docs for compound speckley::DiracPoint...
> Generating docs for compound speckley::ReaderParameters...
> Generating docs for compound speckley::Rectangle...
> Generating docs for compound speckley::RipleyCoupler...
> Generating docs for nested compou>])) [39 </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//diracplot.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.tex [40]
> Chapter 2.
>
> LaTeX Warning: Citation `OPENMP' on page 41 undefined on input line 46.
>
>
> LaTeX Warning: Citation `MPI' on page 41 undefined on input line 47.
>
> [41] [42]) [43] [44]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.tex
> Chapter 3.
> [45]
> Underfull \hbox (badness 1648) in paragraph at lines 79--79
> [] \OT1/ptm/m/sc/9 Fig-ure 3.1\OT1/ptm/m/n/9 : []De-pen-dency of func-tion spac
> es in []. An ar-row in-di-cates that a func-tion in the
>
> LaTeX Warning: Citation `LBB' on page 46 undefined on input line 83.
>
> [46 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram1.pdf>]
>
> LaTeX Warning: Citation `NUMPY' on page 47 undefined on input line 150.
>
> [47] [48]
>
> LaTeX Warning: Citation `NETCDF' on page 49 undefined on input line 318.
>
> [49 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram2.pdf>]nd speckley::RipleyCoupler::Ripley...
> Generating docs for compound speckley::SpeckleyDomain...
> Generating docs for compound speckley::SpeckleyException...
> Generating docs for compound speckley::WaveAssembler2D...
> Generating docs for compound speckley::WaveAssembler3D...
> Generating docs for namespace weipa
> Generating docs for compound weipa::DataVar...
> Generating docs for compound weipa::DomainChunk...
> Generating docs for compound weipa::ElementData...
> Generating docs for compound weipa::EscriptDataset...
> Generating docs for compound weipa::FinleyDomain...
> Generating docs for compound weipa::FinleyElementInfo...
> Generating docs for compound weipa::FinleyElements...
> Generating docs for compound weipa::FinleyNodes...
> Generating docs for compound weipa::NodeData...
> Generating docs for compound weipa::QuadMaskInfo...
> Generating docs for compound weipa::RipleyDomain...
> Generating docs for compound weipa::RipleyElements...
> Generating docs for compound weipa::RipleyNodes...
> Generating docs for compound weipa::SpeckleyDomain...
> Generating docs for compound weipa::SpeckleyElements...
> Generating docs for compound weipa::SpeckleyNodes...
> Generating docs for compound weipa::VarInfo...
> Generating docs for compound weipa::VisItData...
> Generating docs for compound weipa::WeipaException...
> Generating docs for namespace weipa::VisItControl
> Generating graph info page...
> Generating directory documentation...
> Generating index page...
> Generating page index...
> Generating module index...
> Generating namespace index...
> Generating namespace member index...
> Generating annotated compound index...
> Generating alphabetical compound index...
> Generating hierarchical class index...
> Generating member index...
> Generating file index...
> Generating file member index...
> Generating example index...
> finalizing index lists...
> writing tag file...
> Running plantuml with JAVA...
> lookup cache used 19191/65536 hits=326605 misses=19908
> finished...
> [50] [51] [52] [53] [54]
> Underfull \vbox (badness 1348) has occurred while \output is active [55]
>
> LaTeX Warning: Citation `gaussfilter' on page 56 undefined on input line 909.
>
> [56] [57] [58] [59] [60] [61] [62] [63] [64]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) [65]
> Overfull \hbox (30.76083pt too wide) in paragraph at lines 1718--1719
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [66]
> Overfull \hbox (10.1535pt too wide) in paragraph at lines 1742--1743
> \OT1/pcr/m/n/10 Data \OT1/ptm/m/n/10 ob-jects can be con-verted into a numpy st
> ruc-tured ar-ray us-ing the com-mands \OT1/pcr/m/n/10 getNumpy \OT1/ptm/m/n/10
> and \OT1/pcr/m/n/10 convertNumpy\OT1/ptm/m/n/10 .
> [67] [68] [69] [70] [71] [72] [73]
>
> LaTeX Warning: Citation `lazyauspdc' on page 74 undefined on input line 2248.
>
> ) [74]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.tex
> Chapter 4.
> [75] [76]
> Overfull \hbox (18.97215pt too wide) in paragraph at lines 180--182
> \OT1/ptm/m/n/10 Typically, a neg-a-tive value for a di-ag-nos-tic vari-able in-
> di-cates that it is un-de-fined. For more de-tails on \OT1/pcr/m/n/10 SolverOpt
> ions
> [77] [78] [79] [80] [81]
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 2' on page 82 undefined on
> input line 566.
>
> [82] [83] [84]
>
> LaTeX Warning: Citation `MKL' on page 85 undefined on input line 914.
>
>
> LaTeX Warning: Citation `UMFPACK' on page 85 undefined on input line 919.
>
> [85]
>
> LaTeX Warning: Citation `Saad' on page 86 undefined on input line 938.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 943.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 948.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 952.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 973.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 977.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 981.
>
>
> LaTeX Warning: Citation `WEISS' on page 86 undefined on input line 985.
>
>
> LaTeX Warning: Citation `Saad' on page 86 undefined on input line 991.
>
>
> LaTeX Warning: Citation `Saad' on page 86 undefined on input line 995.
>
>
> LaTeX Warning: Citation `AMG' on page 86 undefined on input line 999.
>
>
> LaTeX Warning: Citation `Saad' on page 86 undefined on input line 1004.
>
>
> LaTeX Warning: Citation `RILU' on page 86 undefined on input line 1015.
>
> [86]
>
> LaTeX Warning: Citation `Trilinos' on page 87 undefined on input line 1043.
>
>
> LaTeX Warning: Citation `AMG' on page 87 undefined on input line 1051.
>
>
> LaTeX Warning: Citation `AMG' on page 87 undefined on input line 1054.
>
>
> LaTeX Warning: Citation `AMG' on page 87 undefined on input line 1057.
>
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lum
> ping.tex [87] [88 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//lumping_valet_a_1.png>] [89 </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_valet_a_2.png
> > </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//lumping_valet_u_1.png>] [90 </<<BUILDDIR>>/python-escrip
> t-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_du_1.png> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_
> SUPG_du_2.png>])) [91 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//lumping_SUPG_u_1.png> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_u_1b.png>]
> [92 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/use
> r/figures//lumping_SUPG_u_2.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.tex
> Chapter 5.
>
> LaTeX Warning: Citation `GMSH' on page 93 undefined on input line 24.
>
> [93]
>
> LaTeX Warning: Citation `GMSH' on page 94 undefined on input line 89.
>
>
> LaTeX Warning: Citation `GMSH' on page 94 undefined on input line 133.
>
>
> LaTeX Warning: Citation `GMSH' on page 94 undefined on input line 145.
>
>
> LaTeX Warning: Citation `GMSH' on page 94 undefined on input line 154.
>
> [94] [95 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc
> /user/figures//quad.pdf>] [96 </<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/user/figures//trapezoid.pdf>] [97 </build/python-escript-
> GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//brick.pdf>]
> [98 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//refine.pdf>] [99] [100]
>
> LaTeX Warning: Citation `GMSH' on page 101 undefined on input line 579.
>
>
> LaTeX Warning: Citation `RIGHTHANDRULE' on page 101 undefined on input line 600
> .
>
> [101]
>
> LaTeX Warning: Citation `GMSH' on page 102 undefined on input line 682.
>
> [102]
>
> LaTeX Warning: Citation `GMSH' on page 103 undefined on input line 698.
>
>
> LaTeX Warning: Citation `IDEAS' on page 103 undefined on input line 702.
>
>
> LaTeX Warning: Citation `VRML' on page 103 undefined on input line 706.
>
>
> LaTeX Warning: Citation `STL' on page 103 undefined on input line 710.
>
>
> LaTeX Warning: Citation `NASTRAN' on page 103 undefined on input line 714.
>
>
> LaTeX Warning: Citation `MEDIT' on page 103 undefined on input line 718.
>
>
> LaTeX Warning: Citation `CGNS' on page 103 undefined on input line 722.
>
>
> LaTeX Warning: Citation `PLOT3D' on page 103 undefined on input line 726.
>
>
> LaTeX Warning: Citation `DIFFPACK' on page 103 undefined on input line 730.
>
>
> LaTeX Warning: Citation `GMSH' on page 103 undefined on input line 734.
>
>
> LaTeX Warning: Citation `TETGEN' on page 103 undefined on input line 734.
>
>
> LaTeX Warning: Citation `GMSH' on page 103 undefined on input line 738.
>
>
> LaTeX Warning: Citation `NETGEN' on page 103 undefined on input line 742.
>
> [103] [104]) [105]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.tex [106]
> Chapter 6.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kessolver.tex
>
> LaTeX Warning: Citation `AAMIRBERKYAN2008' on page 107 undefined on input line
> 69.
>
>
> LaTeX Warning: Citation `MBENZI2005' on page 107 undefined on input line 69.
>
> [107]
>
> LaTeX Warning: Citation `ELMAN' on page 108 undefined on input line 148.
>
> [108] [109] [110]
>
> LaTeX Warning: Citation `LBB' on page 111 undefined on input line 334.
>
> [111])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dar
> cyflux.tex [112] [113] [114 </<<PKGBUILDDIR>>/de
> bian/tmp3/posix/doc/user/figures//darcy_result.png (PNG copy)>])
>
> LaTeX Warning: Citation `Muhlhaus2005' on page 115 undefined on input line 28.
>
>
> LaTeX Warning: Citation `Muhlhaus2005' on page 115 undefined on input line 55.
>
> [115] [116]
>
> LaTeX Warning: Citation `LBB' on page 117 undefined on input line 206.
>
> [117]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fau
> ltsystem.tex [118 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//FaultSystem2D.pdf>] [119] [120] [121])) [122]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.tex
> Chapter 7.
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 123 undefined on input line 74
> .
>
> [123]
> Underfull \vbox (badness 1226) has occurred while \output is active [124 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMesh.pdf>] [125 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//FinleyContact.pdf>] [126]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> leyelements.tex) [127] [128]
> Underfull \hbox (badness 1910) in paragraph at lines 383--383
> []\OT1/ptm/m/n/10 Table 7.2: Solvers avail-able for [] and the \OT1/pcr/m/n/10
> PASO [][]\OT1/ptm/m/n/10 pack-age and the rel-e-vant op-tions in
>
> Underfull \vbox (badness 1337) has occurred while \output is active [129 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMacroLeg.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//FinleyMacroTri.pdf> </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//FinleyMacroRec.pdf>]
>
> LaTeX Warning: Citation `GMSH' on page 130 undefined on input line 444.
>
>
> LaTeX Warning: Citation `GMSH' on page 130 undefined on input line 456.
>
> [130]) [131]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.tex [132]
> Chapter 8.
> [133] [134 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//RipleyMesh.pdf>]) [135]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.tex [136]
> Chapter 9.
> [137]) [138 </<<PKGBUILDDIR>>/debian/tmp3/posix/
> doc/user/figures//speckley3.png (PNG copy)> </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/user/figures//speckley6.png (PNG copy)> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//speckley9.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.tex
> Chapter 10.
> [139]
>
> LaTeX Warning: Citation `GOCAD' on page 140 undefined on input line 136.
>
> [140]
>
> LaTeX Warning: Citation `VisIt' on page 141 undefined on input line 174.
>
> [141]) [142]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.tex
> Chapter 11.
>
> LaTeX Warning: Citation `TrilinosWeb' on page 143 undefined on input line 18.
>
> [143] [144]
>
> LaTeX Warning: Citation `Briggs2000' on page 145 undefined on input line 164.
>
> [145]
>
> LaTeX Warning: Citation `Briggs2000' on page 146 undefined on input line 188.
>
>
> LaTeX Warning: Citation `Stuben2001281' on page 146 undefined on input line 188
> .
>
>
> LaTeX Warning: Citation `Vanek1996' on page 146 undefined on input line 188.
>
>
> LaTeX Warning: Citation `Tuminaro2000' on page 146 undefined on input line 188.
>
>
>
> LaTeX Warning: Citation `TrilinosWeb' on page 146 undefined on input line 205.
>
> [146] [147]
> Underfull \hbox (badness 10000) in paragraph at lines 266--271
>
>
> Overfull \hbox (0.87425pt too wide) in paragraph at lines 278--279
> []\OT1/pcr/m/n/10 "Elasticity-2D" and "Elasticity-3D"\OT1/ptm/m/n/10 : us-ing s
> moothed ag-gre-ga-tion, Cheby-shev smoother and
> [148] [149] [150]
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 454--455
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (3.76056pt too wide) in paragraph at lines 464--465
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 466--467
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [151]) [152]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.tex
> Chapter 12.
>
> LaTeX Warning: Citation `Sympy' on page 153 undefined on input line 20.
>
>
> Underfull \vbox (badness 10000) has occurred while \output is active [153]
> [154]
>
> LaTeX Warning: `!h' float specifier changed to `!ht'.
>
> [155] [156 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//0RotAniso.png> </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/user/figures//0RotIso.png> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//MidRotAniso.png> </bui
> ld/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures/
> /MidRotIso.png> </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//diffaniso.png>] [157]) [158]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.tex
> Chapter 13.
> [159] [160] [161]) [162]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/not
> ation.tex
> Appendix A.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cha
> nges.tex [163] [164]
> Appendix B.
> [165] [166] [167] [168] [169] [170] [171])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/com
> pletedevs.tex [172]
> Appendix C.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/our
> refs.tex [173] [174]
> Appendix D.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty) [175])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/py3
> .tex [176]
> Appendix E.
> )) [177] [178]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.ind [179] [180] [181]) [182]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.bbl [183]) [184]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
>
> Package rerunfilecheck Warning: File `user.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra
> /cmex8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10
> .pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pf
> b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texliv
> e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texlive/texmf
> -dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/f
> onts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/latxfont/lcirclew.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/line10.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/linew10.pfb></usr/share/texlive/texmf-d
> ist/fonts/type1/public/amsfonts/symbols/msam7.pfb></usr/share/texlive/texmf-dis
> t/fonts/type1/public/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/u
> crro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb><
> /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
> pe1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/u
> tmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive
> /texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
> Output written on user.pdf (184 pages, 2639577 bytes).
> Transcript written on user.log.
> cd debian/tmp3/posix/doc/user && makeindex user.idx
> This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
> Scanning input file user.idx....done (716 entries accepted, 12 rejected).
> Sorting entries........done (7122 comparisons).
> Generating output file user.ind....done (353 lines written, 0 warnings).
> Output written in user.ind.
> Transcript written in user.ilg.
> cd debian/tmp3/posix/doc/user && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{user.tex} user.tex
> This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esy
> sdoc.cls
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r_defs.tex (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/ccaption/ccaption.sty)
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/eli
> st.tex (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> ))) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/ver
> info.tex)
> Writing index file user.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map}]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cop
> yrights.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/doc
> guide.tex [2]) [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
> [4]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cur
> rentdev.tex [5]) [6]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.toc [7] [8] [9]) [10]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.tex
> Chapter 1.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fir
> ststep.tex [11 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//FirstStepDomain.pdf>]
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 12 undefined on input line 148
> .
>
> [12] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) [13 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FirstStepMesh.pdf>] [14] [15] [16 </<<BUILDDIR>>/python-escript-
> 5.5/debian/tmp3/posix/doc/user/figures//FirstStepResultMATPLOTLIB.pdf>]
> [17 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//FirstStepResult.pdf>])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dif
> fusion.tex [18 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//DiffusionDomain.pdf>] [19] [20] [21] [22])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wav
> e.tex [23 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//DiffusionRes1.pdf> </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes16.pdf> </build/python-esc
> ript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes
> 32.pdf> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/
> user/figures//DiffusionRes48.pdf>] [24 </<<BUILDDIR>>/python-esc
> ript-5.5/debian/tmp3/posix/doc/user/figures//waveu.pdf, page is rotated 90 degr
> ees>] [25 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//wavea.pdf, page is rotated 90 degrees>] [26] [27]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [28 </build/python-e
> script-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave11.pdf
> > </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//Wave22.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//Wave28.pdf> </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/user/figures//Wave32.pdf> </build/python-escript-
> GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave36.pdf>])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/hea
> tedblock.tex [29 </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/user/figures//WavePC.pdf, page is rotated 90 degrees>] [30] [31])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kesflow.tex [32 </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//HeatedBlock.pdf>] [33])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sli
> p.tex [34] [35 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//stokes-fluid-t01.pdf> </<<BUILDDIR>>/python
> -escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t10.pdf> </build/
> python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//st
> okes-fluid-t20.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//stokes-fluid-t30.pdf> </<<BUILDDIR>>/p
> ython-escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t40.pdf> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//stokes-fluid-t50.pdf>] [36 </<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/user/figures//Slip1.pdf>] [37])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dir
> ac.tex [38 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//Slip2.png>])) [39 </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//diracplot.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.tex [40]
> Chapter 2.
> [41] [42]) [43] [44]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.tex
> Chapter 3.
> [45]
> Underfull \hbox (badness 1648) in paragraph at lines 79--79
> [] \OT1/ptm/m/sc/9 Fig-ure 3.1\OT1/ptm/m/n/9 : []De-pen-dency of func-tion spac
> es in []. An ar-row in-di-cates that a func-tion in the
> [46 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram1.pdf>] [47] [48] [49 </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//EscriptDiagram2.pdf>]
> [50] [51] [52] [53] [54]
> Underfull \vbox (badness 1348) has occurred while \output is active [55]
> [56] [57] [58] [59] [60] [61] [62] [63] [64]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) [65]
> Overfull \hbox (30.76083pt too wide) in paragraph at lines 1718--1719
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [66]
> Overfull \hbox (10.1535pt too wide) in paragraph at lines 1742--1743
> \OT1/pcr/m/n/10 Data \OT1/ptm/m/n/10 ob-jects can be con-verted into a numpy st
> ruc-tured ar-ray us-ing the com-mands \OT1/pcr/m/n/10 getNumpy \OT1/ptm/m/n/10
> and \OT1/pcr/m/n/10 convertNumpy\OT1/ptm/m/n/10 .
> [67] [68] [69] [70] [71] [72] [73]) [74]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.tex
> Chapter 4.
> [75] [76]
> Overfull \hbox (18.97215pt too wide) in paragraph at lines 180--182
> \OT1/ptm/m/n/10 Typically, a neg-a-tive value for a di-ag-nos-tic vari-able in-
> di-cates that it is un-de-fined. For more de-tails on \OT1/pcr/m/n/10 SolverOpt
> ions
> [77] [78] [79] [80] [81]
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 2' on page 82 undefined on
> input line 566.
>
> [82] [83] [84] [85] [86]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lum
> ping.tex [87] [88 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//lumping_valet_a_1.png>] [89 </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_valet_a_2.png
> > </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//lumping_valet_u_1.png>] [90 </<<BUILDDIR>>/python-escrip
> t-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_du_1.png> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_
> SUPG_du_2.png>])) [91 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//lumping_SUPG_u_1.png> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_u_1b.png>]
> [92 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/use
> r/figures//lumping_SUPG_u_2.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.tex
> Chapter 5.
> [93] [94] [95 </<<PKGBUILDDIR>>/debian/tmp3/posi
> x/doc/user/figures//quad.pdf>] [96 </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//trapezoid.pdf>] [97 </build/python-esc
> ript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//brick.pdf>]
> [98 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//refine.pdf>] [99] [100] [101] [102] [103] [104]) [105]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.tex [106]
> Chapter 6.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kessolver.tex [107] [108] [109] [110] [111])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dar
> cyflux.tex [112] [113] [114 </<<PKGBUILDDIR>>/de
> bian/tmp3/posix/doc/user/figures//darcy_result.png (PNG copy)>]) [115] [116]
> [117]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fau
> ltsystem.tex [118 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//FaultSystem2D.pdf>] [119] [120] [121])) [122]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.tex
> Chapter 7.
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 123 undefined on input line 74
> .
>
> [123]
> Underfull \vbox (badness 1226) has occurred while \output is active [124 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMesh.pdf>] [125 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//FinleyContact.pdf>] [126]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> leyelements.tex) [127] [128]
> Underfull \hbox (badness 1910) in paragraph at lines 383--383
> []\OT1/ptm/m/n/10 Table 7.2: Solvers avail-able for [] and the \OT1/pcr/m/n/10
> PASO [][]\OT1/ptm/m/n/10 pack-age and the rel-e-vant op-tions in
>
> Underfull \vbox (badness 1337) has occurred while \output is active [129 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMacroLeg.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//FinleyMacroTri.pdf> </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//FinleyMacroRec.pdf>]
> [130]) [131]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.tex [132]
> Chapter 8.
> [133] [134 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//RipleyMesh.pdf>]) [135]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.tex [136]
> Chapter 9.
> [137]) [138 </<<PKGBUILDDIR>>/debian/tmp3/posix/
> doc/user/figures//speckley3.png (PNG copy)> </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/user/figures//speckley6.png (PNG copy)> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//speckley9.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.tex
> Chapter 10.
> [139] [140] [141]) [142]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.tex
> Chapter 11.
> [143] [144] [145] [146] [147]
> Underfull \hbox (badness 10000) in paragraph at lines 266--271
>
>
> Overfull \hbox (0.87425pt too wide) in paragraph at lines 278--279
> []\OT1/pcr/m/n/10 "Elasticity-2D" and "Elasticity-3D"\OT1/ptm/m/n/10 : us-ing s
> moothed ag-gre-ga-tion, Cheby-shev smoother and
> [148] [149] [150]
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 454--455
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (3.76056pt too wide) in paragraph at lines 464--465
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 466--467
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [151]) [152]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.tex
> Chapter 12.
>
> Underfull \vbox (badness 10000) has occurred while \output is active [153]
> [154]
>
> LaTeX Warning: `!h' float specifier changed to `!ht'.
>
> [155] [156 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//0RotAniso.png> </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/user/figures//0RotIso.png> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//MidRotAniso.png> </bui
> ld/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures/
> /MidRotIso.png> </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//diffaniso.png>] [157]) [158]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.tex
> Chapter 13.
> [159] [160] [161]) [162]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/not
> ation.tex
> Appendix A.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cha
> nges.tex [163] [164]
> Appendix B.
> [165] [166] [167] [168] [169] [170] [171])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/com
> pletedevs.tex [172]
> Appendix C.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/our
> refs.tex [173] [174]
> Appendix D.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty) [175])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/py3
> .tex [176]
> Appendix E.
> )) [177] [178]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.ind [179] [180] [181]) [182]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.bbl [183]) [184]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
>
> Package rerunfilecheck Warning: File `user.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra
> /cmex8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10
> .pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pf
> b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texliv
> e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texlive/texmf
> -dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/f
> onts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/latxfont/lcirclew.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/line10.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/linew10.pfb></usr/share/texlive/texmf-d
> ist/fonts/type1/public/amsfonts/symbols/msam7.pfb></usr/share/texlive/texmf-dis
> t/fonts/type1/public/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/u
> crro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb><
> /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
> pe1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/u
> tmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive
> /texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
> Output written on user.pdf (184 pages, 2642166 bytes).
> Transcript written on user.log.
> cd debian/tmp3/posix/doc/user && pdflatex -interaction=nonstopmode -recorder -interaction=nonstopmode \\newcommand{\\RepVersion}{-2\\xspace}\\input{user.tex} user.tex
> This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
> LaTeX2e <2020-10-01> patch level 2
> L3 programming layer <2020-10-27> xparse <2020-03-03>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esy
> sdoc.cls
> Document Class: esysdoc
> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
> Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
>
> Package geometry Warning: Over-specification in `h'-direction.
> `width' (478.00812pt) is ignored.
>
> ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/underscore/underscore.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
> (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
> (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
> (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
> (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
> (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r_defs.tex (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.sty
> ****************************************
> * Local config file subfigure.cfg used *
> ****************************************
> (/usr/share/texlive/texmf-dist/tex/latex/subfigure/subfigure.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/ccaption/ccaption.sty)
> \@input{elist.aux}
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/eli
> st.tex (/usr/share/texlive/texmf-dist/tex/latex/listing/listing.sty
> Package `listing', V1.2, <1999/05/25>
> ))) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/ver
> info.tex)
> Writing index file user.idx
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
> (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) [1{/var/lib/texmf/fo
> nts/map/pdftex/updmap/pdftex.map}]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cop
> yrights.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd))
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/doc
> guide.tex [2]) [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
> [4]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cur
> rentdev.tex [5]) [6]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.toc [7] [8] [9]) [10]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.tex
> Chapter 1.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fir
> ststep.tex [11 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//FirstStepDomain.pdf>]
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 12 undefined on input line 148
> .
>
> [12] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) [13 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FirstStepMesh.pdf>] [14] [15] [16 </<<BUILDDIR>>/python-escript-
> 5.5/debian/tmp3/posix/doc/user/figures//FirstStepResultMATPLOTLIB.pdf>]
> [17 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//FirstStepResult.pdf>])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dif
> fusion.tex [18 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//DiffusionDomain.pdf>] [19] [20] [21] [22])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wav
> e.tex [23 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//DiffusionRes1.pdf> </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes16.pdf> </build/python-esc
> ript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//DiffusionRes
> 32.pdf> </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/
> user/figures//DiffusionRes48.pdf>] [24 </<<BUILDDIR>>/python-esc
> ript-5.5/debian/tmp3/posix/doc/user/figures//waveu.pdf, page is rotated 90 degr
> ees>] [25 </<<PKGBUILDDIR>>/debian/tmp3/posix/do
> c/user/figures//wavea.pdf, page is rotated 90 degrees>] [26] [27]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [28 </build/python-e
> script-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave11.pdf
> > </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//Wave22.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//Wave28.pdf> </<<BUILDDIR>>/python-escr
> ipt-5.5/debian/tmp3/posix/doc/user/figures//Wave32.pdf> </build/python-escript-
> GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//Wave36.pdf>])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/hea
> tedblock.tex [29 </<<PKGBUILDDIR>>/debian/tmp3/p
> osix/doc/user/figures//WavePC.pdf, page is rotated 90 degrees>] [30] [31])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kesflow.tex [32 </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//HeatedBlock.pdf>] [33])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sli
> p.tex [34] [35 </<<PKGBUILDDIR>>/debian/tmp3/pos
> ix/doc/user/figures//stokes-fluid-t01.pdf> </<<BUILDDIR>>/python
> -escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t10.pdf> </build/
> python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//st
> okes-fluid-t20.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//stokes-fluid-t30.pdf> </<<BUILDDIR>>/p
> ython-escript-5.5/debian/tmp3/posix/doc/user/figures//stokes-fluid-t40.pdf> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//stokes-fluid-t50.pdf>] [36 </<<PKGBUILDDIR>>/
> debian/tmp3/posix/doc/user/figures//Slip1.pdf>] [37])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dir
> ac.tex [38 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//Slip2.png>])) [39 </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//diracplot.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.tex [40]
> Chapter 2.
> [41] [42]) [43] [44]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.tex
> Chapter 3.
> [45]
> Underfull \hbox (badness 1648) in paragraph at lines 79--79
> [] \OT1/ptm/m/sc/9 Fig-ure 3.1\OT1/ptm/m/n/9 : []De-pen-dency of func-tion spac
> es in []. An ar-row in-di-cates that a func-tion in the
> [46 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//EscriptDiagram1.pdf>] [47] [48] [49 </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//EscriptDiagram2.pdf>]
> [50] [51] [52] [53] [54]
> Underfull \vbox (badness 1348) has occurred while \output is active [55]
> [56] [57] [58] [59] [60] [61] [62] [63] [64]
> (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) [65]
> Overfull \hbox (30.76083pt too wide) in paragraph at lines 1718--1719
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [66]
> Overfull \hbox (10.1535pt too wide) in paragraph at lines 1742--1743
> \OT1/pcr/m/n/10 Data \OT1/ptm/m/n/10 ob-jects can be con-verted into a numpy st
> ruc-tured ar-ray us-ing the com-mands \OT1/pcr/m/n/10 getNumpy \OT1/ptm/m/n/10
> and \OT1/pcr/m/n/10 convertNumpy\OT1/ptm/m/n/10 .
> [67] [68] [69] [70] [71] [72] [73]) [74]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.tex
> Chapter 4.
> [75] [76]
> Overfull \hbox (18.97215pt too wide) in paragraph at lines 180--182
> \OT1/ptm/m/n/10 Typically, a neg-a-tive value for a di-ag-nos-tic vari-able in-
> di-cates that it is un-de-fined. For more de-tails on \OT1/pcr/m/n/10 SolverOpt
> ions
> [77] [78] [79] [80] [81]
>
> LaTeX Warning: Reference `TAB FINLEY SOLVER OPTIONS 2' on page 82 undefined on
> input line 566.
>
> [82] [83] [84] [85] [86]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lum
> ping.tex [87] [88 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//lumping_valet_a_1.png>] [89 </build/python-escript-GiQz
> 3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_valet_a_2.png
> > </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/f
> igures//lumping_valet_u_1.png>] [90 </<<BUILDDIR>>/python-escrip
> t-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_du_1.png> </build/python
> -escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_
> SUPG_du_2.png>])) [91 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//lumping_SUPG_u_1.png> </<<BUILDDIR>>
> /python-escript-5.5/debian/tmp3/posix/doc/user/figures//lumping_SUPG_u_1b.png>]
> [92 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/use
> r/figures//lumping_SUPG_u_2.png>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.tex
> Chapter 5.
> [93] [94] [95 </<<PKGBUILDDIR>>/debian/tmp3/posi
> x/doc/user/figures//quad.pdf>] [96 </<<BUILDDIR>>/python-escript
> -5.5/debian/tmp3/posix/doc/user/figures//trapezoid.pdf>] [97 </build/python-esc
> ript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//brick.pdf>]
> [98 </<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user
> /figures//refine.pdf>] [99] [100] [101] [102] [103] [104]) [105]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.tex [106]
> Chapter 6.
>
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sto
> kessolver.tex [107] [108] [109] [110] [111])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/dar
> cyflux.tex [112] [113] [114 </<<PKGBUILDDIR>>/de
> bian/tmp3/posix/doc/user/figures//darcy_result.png (PNG copy)>]) [115] [116]
> [117]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fau
> ltsystem.tex [118 </<<PKGBUILDDIR>>/debian/tmp3/
> posix/doc/user/figures//FaultSystem2D.pdf>] [119] [120] [121])) [122]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.tex
> Chapter 7.
>
> LaTeX Warning: Reference `Zienc,NumHand' on page 123 undefined on input line 74
> .
>
> [123]
> Underfull \vbox (badness 1226) has occurred while \output is active [124 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMesh.pdf>] [125 </<<PKGBUILDDIR>>/debian/t
> mp3/posix/doc/user/figures//FinleyContact.pdf>] [126]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> leyelements.tex) [127] [128]
> Underfull \hbox (badness 1910) in paragraph at lines 383--383
> []\OT1/ptm/m/n/10 Table 7.2: Solvers avail-able for [] and the \OT1/pcr/m/n/10
> PASO [][]\OT1/ptm/m/n/10 pack-age and the rel-e-vant op-tions in
>
> Underfull \vbox (badness 1337) has occurred while \output is active [129 </buil
> d/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//
> FinleyMacroLeg.pdf> </<<PKGBUILDDIR>>/debian/tmp
> 3/posix/doc/user/figures//FinleyMacroTri.pdf> </<<BUILDDIR>>/pyt
> hon-escript-5.5/debian/tmp3/posix/doc/user/figures//FinleyMacroRec.pdf>]
> [130]) [131]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.tex [132]
> Chapter 8.
> [133] [134 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//RipleyMesh.pdf>]) [135]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.tex [136]
> Chapter 9.
> [137]) [138 </<<PKGBUILDDIR>>/debian/tmp3/posix/
> doc/user/figures//speckley3.png (PNG copy)> </<<BUILDDIR>>/pytho
> n-escript-5.5/debian/tmp3/posix/doc/user/figures//speckley6.png (PNG copy)> </b
> uild/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figure
> s//speckley9.png (PNG copy)>]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.tex
> Chapter 10.
> [139] [140] [141]) [142]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.tex
> Chapter 11.
> [143] [144] [145] [146] [147]
> Underfull \hbox (badness 10000) in paragraph at lines 266--271
>
>
> Overfull \hbox (0.87425pt too wide) in paragraph at lines 278--279
> []\OT1/pcr/m/n/10 "Elasticity-2D" and "Elasticity-3D"\OT1/ptm/m/n/10 : us-ing s
> moothed ag-gre-ga-tion, Cheby-shev smoother and
> [148] [149] [150]
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 454--455
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (3.76056pt too wide) in paragraph at lines 464--465
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][]
>
> Overfull \hbox (63.16116pt too wide) in paragraph at lines 466--467
> [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][
> ][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][]
> [151]) [152]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.tex
> Chapter 12.
>
> Underfull \vbox (badness 10000) has occurred while \output is active [153]
> [154]
>
> LaTeX Warning: `!h' float specifier changed to `!ht'.
>
> [155] [156 </<<PKGBUILDDIR>>/debian/tmp3/posix/d
> oc/user/figures//0RotAniso.png> </<<BUILDDIR>>/python-escript-5.
> 5/debian/tmp3/posix/doc/user/figures//0RotIso.png> </build/python-escript-GiQz3
> M/python-escript-5.5/debian/tmp3/posix/doc/user/figures//MidRotAniso.png> </bui
> ld/python-escript-GiQz3M/python-escript-5.5/debian/tmp3/posix/doc/user/figures/
> /MidRotIso.png> </<<PKGBUILDDIR>>/debian/tmp3/po
> six/doc/user/figures//diffaniso.png>] [157]) [158]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.tex
> Chapter 13.
> [159] [160] [161]) [162]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.tex
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/not
> ation.tex
> Appendix A.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/cha
> nges.tex [163] [164]
> Appendix B.
> [165] [166] [167] [168] [169] [170] [171])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/com
> pletedevs.tex [172]
> Appendix C.
> )
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/our
> refs.tex [173] [174]
> Appendix D.
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang3.sty) [175])
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/py3
> .tex [176]
> Appendix E.
> )) [177] [178]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.ind [179] [180] [181]) [182]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.bbl [183]) [184]
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/use
> r.aux
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Tut
> orialPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/exe
> cute.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/esc
> ript.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/lin
> earPDE.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/pyc
> ad.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/Mod
> els.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/fin
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/rip
> ley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/spe
> ckley.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/wei
> pa.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/tri
> linos.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sym
> bolic.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/sub
> worlds.aux)
> (/<<PKGBUILDDIR>>/debian/tmp3/posix/doc/user/app
> endix.aux))
>
> Package rerunfilecheck Warning: File `user.out' has changed.
> (rerunfilecheck) Rerun to get outlines right
> (rerunfilecheck) or use package `bookmark'.
>
>
> LaTeX Warning: There were undefined references.
>
> )
> (see the transcript file for additional information){/usr/share/texlive/texmf-d
> ist/fonts/enc/dvips/base/8r.enc}</usr/share/texlive/texmf-dist/fonts/type1/publ
> ic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmbx8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
> m/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cmextra
> /cmex8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10
> .pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></
> usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/sha
> re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texl
> ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/tex
> mf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/
> type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
> blic/amsfonts/cm/cmr6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
> fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
> /cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pf
> b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share
> /texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texliv
> e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb></usr/share/texlive/texmf
> -dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/texlive/texmf-dist/f
> onts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/public/amsfonts/latxfont/lcirclew.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/line10.pfb></usr/share/texlive/texmf-di
> st/fonts/type1/public/amsfonts/latxfont/linew10.pfb></usr/share/texlive/texmf-d
> ist/fonts/type1/public/amsfonts/symbols/msam7.pfb></usr/share/texlive/texmf-dis
> t/fonts/type1/public/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist
> /fonts/type1/urw/courier/ucrb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/
> urw/courier/ucrr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/courier/u
> crro8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb><
> /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/t
> exlive/texmf-dist/fonts/type1/urw/helvetic/uhvro8a.pfb></usr/share/texlive/texm
> f-dist/fonts/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
> pe1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/u
> tmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></us
> r/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive
> /texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
> Output written on user.pdf (184 pages, 2642166 bytes).
> Transcript written on user.log.
> reached max number of retries on Latex , 4
> scons: building terminated because of errors.
>
> *** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***
> Escript revision 6948
>
> Install prefix: /<<PKGBUILDDIR>>/debian/stage3
> Python: /usr/bin/python3 (Version 3.9.1)
> boost: /usr (Version 1.71.0)
> boost numpy: NO
> trilinos: NO
> numpy: YES (with headers)
> gmsh: YES
> Solver library: paso
> Direct solver: NONE
> domains: dudley, finley, ripley, speckley
> netcdf: YES (4 + 3)
> weipa: YES
> openmp: YES
> gdal: YES
> pyproj: YES
> scipy: YES
> silo: YES
>
> DISABLED features: cppunit debug gzip lapack mkl mpi parmetis sympy trilinos umfpack visit
> NOT treating warnings as errors
>
> WARNING: escript does not support sympy version 1.2 and higher. Found version 1.6
>
> ERROR: build stopped due to errors
>
> make[1]: *** [debian/rules:66: override_dh_auto_build] Error 2
The full build log is available from:
http://qa-logs.debian.net/2020/12/05/python-escript_5.5-5_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
More information about the debian-science-maintainers
mailing list