Bug#978804: esys-particle: ftbfs with autoconf 2.70
Matthias Klose
doko at debian.org
Thu Dec 31 14:27:19 GMT 2020
Package: src:esys-particle
Version: 2.3.5+dfsg2-1
Severity: normal
Tags: sid bookworm
User: doko at debian.org
Usertags: ftbfs-ac270
[This bug report is not targeted to the upcoming bullseye release]
The package fails to build in a test rebuild on at least amd64 with
autoconf 2.70, but succeeds to build with autoconf 2.69. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://qa-logs.debian.net/2020/09/26.ac270/esys-particle_2.3.5+dfsg2-1_unstable_ac270.log
The last lines of the build log are at the end of this report.
To build with autoconf 2.70, please install the autoconf package from
experimental: apt-get -t=experimental install autoconf
[...]
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotParticleVi.lo RotParticleVi.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotParticleVi.cpp -fPIC -DPIC -o .libs/RotParticleVi.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermBondedInteraction.lo RotThermBondedInteraction.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermBondedInteraction.cpp -fPIC -DPIC -o .libs/RotThermBondedInteraction.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermElasticInteraction.lo RotThermElasticInteraction.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermElasticInteraction.cpp -fPIC -DPIC -o .libs/RotThermElasticInteraction.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermElasticInteractionGroup.lo RotThermElasticInteractionGroup.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermElasticInteractionGroup.cpp -fPIC -DPIC -o .libs/RotThermElasticInteractionGroup.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotParticleVi.cpp -o RotParticleVi.o >/dev/null 2>&1
In file included from RotThermElasticInteractionGroup.h:52,
from RotThermElasticInteractionGroup.cpp:14:
RotThermElasticInteractionGroup.hpp: In member function ‘virtual void CRotThermElasticInteractionGroup<T>::Update(ParallelParticleArray<T>*)’:
RotThermElasticInteractionGroup.hpp:75:18: warning: invalid use of incomplete type ‘class AParallelInteractionStorage’
75 | if(!this->m_exIG->isIn(tv)){
| ^~
In file included from RotThermElasticInteractionGroup.h:17,
from RotThermElasticInteractionGroup.cpp:14:
InteractionGroup.h:27:7: note: forward declaration of ‘class AParallelInteractionStorage’
27 | class AParallelInteractionStorage;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RotThermElasticInteractionGroup.h:52,
from RotThermElasticInteractionGroup.cpp:14:
RotThermElasticInteractionGroup.hpp:103:18: warning: invalid use of incomplete type ‘class AParallelInteractionStorage’
103 | if(!this->m_exIG->isIn(tv)){
| ^~
In file included from RotThermElasticInteractionGroup.h:17,
from RotThermElasticInteractionGroup.cpp:14:
InteractionGroup.h:27:7: note: forward declaration of ‘class AParallelInteractionStorage’
27 | class AParallelInteractionStorage;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermBondedInteraction.cpp -o RotThermBondedInteraction.o >/dev/null 2>&1
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermElasticInteraction.cpp -o RotThermElasticInteraction.o >/dev/null 2>&1
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermElasticInteractionGroup.cpp -o RotThermElasticInteractionGroup.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermFricInteraction.lo RotThermFricInteraction.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermFricInteraction.cpp -fPIC -DPIC -o .libs/RotThermFricInteraction.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermPairInteraction.lo RotThermPairInteraction.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermPairInteraction.cpp -fPIC -DPIC -o .libs/RotThermPairInteraction.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o RotThermParticle.lo RotThermParticle.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermParticle.cpp -fPIC -DPIC -o .libs/RotThermParticle.o
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ThermParticle.lo ThermParticle.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ThermParticle.cpp -fPIC -DPIC -o .libs/ThermParticle.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermFricInteraction.cpp -o RotThermFricInteraction.o >/dev/null 2>&1
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ThermParticle.cpp -o ThermParticle.o >/dev/null 2>&1
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermPairInteraction.cpp -o RotThermPairInteraction.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. "-I.." -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FieldMaster.lo `test -f '../Fields/FieldMaster.cpp' || echo './'`../Fields/FieldMaster.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../Fields/FieldMaster.cpp -fPIC -DPIC -o .libs/FieldMaster.o
In file included from /usr/include/c++/10/ext/string_conversions.h:41,
from /usr/include/c++/10/bits/basic_string.h:6535,
from /usr/include/c++/10/string:55,
from ../Fields/FieldMaster.h:25,
from ../Fields/FieldMaster.cpp:13:
/usr/include/c++/10/cstdlib:151:11: error: ‘malloc’ has not been declared in ‘::’
151 | using ::malloc;
| ^~~~~~
/usr/include/c++/10/cstdlib:164:11: error: ‘realloc’ has not been declared in ‘::’
164 | using ::realloc;
| ^~~~~~~
make[4]: *** [Makefile:886: FieldMaster.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -I../Foundation -I../Parallel -I../Fields -I../Parser -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c RotThermParticle.cpp -o RotThermParticle.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Model'
make[3]: *** [Makefile:459: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:390: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make[1]: *** [debian/rules:39: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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