Bug#975007: src:xmds2: autopkgtest times out on ppc64el (and sometimes on amd64)

Tue Nov 17 20:40:05 GMT 2020

Source: xmds2
Version: 3.0.0+dfsg-4
User: debian-ci at lists.debian.org
Usertags: timeout flaky
X-Debbugs-CC: debian-ci at lists.debian.org

Dear maintainer,

Your package has an autopkgtest, great! However, it fails due to timeout
on ppc64el (after 2:47 hours) and regularly on amd64 too. Can you please
investigate and fix the situation?

To avoid needlessly stress our infrastructure, I'll block this
package on ppc64el until this bug is fixed.

Paul

https://ci.debian.net/data/autopkgtest/testing/ppc64el/x/xmds2/8069072/log.gz

Checking for single-precision FFTW3 with MPI (static library)
  : yes
('Config log saved to ',
'/tmp/autopkgtest-lxc.96w1db5r/downtmp/build.B8V/src/debian/xmds-user-data/waf_configure/config.log')
test_initialisation_order (__main__.main.<locals>.ScriptTestCase)
vectors/initialisation_order.xmds ... ok
test_initialisation_order_chunked (__main__.main.<locals>.ScriptTestCase)
vectors/initialisation_order_chunked.xmds ... ok
test_partial_integration_computed_vector
(__main__.main.<locals>.ScriptTestCase)
vectors/partial_integration_computed_vector.xmds ... ok
test_bug_adaptive_timestep_hang (__main__.main.<locals>.ScriptTestCase)
integrators/bug_adaptive_timestep_hang.xmds ... FAIL
test_vibstring_ark45 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_ark45.xmds ... ok
test_vibstring_ark89 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_ark89.xmds ... ok
test_vibstring_mm (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_mm.xmds ... ok
test_vibstring_re (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_re.xmds ... ok
test_vibstring_rk4 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk4.xmds ... ok
test_vibstring_rk45 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk45.xmds ... ok
test_vibstring_rk89 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk89.xmds ... ok
test_vibstring_rk9 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk9.xmds ... ok
test_vibstring_si (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_si.xmds ... ok
test_arguments (__main__.main.<locals>.ScriptTestCase)
features/arguments.xmds ... ok
test_arguments_append_args_to_output_filename
(__main__.main.<locals>.ScriptTestCase)
features/arguments_append_args_to_output_filename.xmds ... ok
test_arguments_with_similar_names (__main__.main.<locals>.ScriptTestCase)
features/arguments_with_similar_names.xmds ... ok
test_error_check_multipath (__main__.main.<locals>.ScriptTestCase)
features/error_check_multipath.xmds ... ok
test_halt_non_finite (__main__.main.<locals>.ScriptTestCase)
features/halt_non_finite.xmds ... ok
test_hermitegauss_transform_2d_chunked_breakpoints
(__main__.main.<locals>.ScriptTestCase)
features/hermitegauss_transform_2d_chunked_breakpoints.xmds ... ok
test_hermitegauss_transform_2d_chunked_breakpoints_hdf5
(__main__.main.<locals>.ScriptTestCase)
features/hermitegauss_transform_2d_chunked_breakpoints_hdf5.xmds ... ok
test_realistic_Rb_and_fields (__main__.main.<locals>.ScriptTestCase)
features/realistic_Rb_and_fields.xmds ... ok
test_runtime_paths (__main__.main.<locals>.ScriptTestCase)
features/runtime_paths.xmds ... ok
test_space in filename (__main__.main.<locals>.ScriptTestCase)
features/space in filename.xmds ... ok
test_bessel_cosine_stochastic_groundstate
(__main__.main.<locals>.ScriptTestCase)
stochastic/bessel_cosine_stochastic_groundstate.xmds ... ok
test_double_precision_noise_tests (__main__.main.<locals>.ScriptTestCase)
stochastic/double_precision_noise_tests.xmds ... autopkgtest [22:42:19]:
ERROR: timed out on command "su -s /bin/bash debci -c set -e; export
USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true;  . ~/.profile
>/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.96w1db5r/downtmp/build.B8V/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.96w1db5r/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.96w1db5r/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=4; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.96w1db5r/downtmp/build.B8V/src/debian/tests/run-tests;
touch /tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-stdout
/tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-stderr;
/tmp/autopkgtest-lxc.96w1db5r/downtmp/build.B8V/src/debian/tests/run-tests
2> >(tee -a /tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-stderr >&2)
> >(tee -a /tmp/autopkgtest-lxc.96w1db5r/downtmp/run-tests-stdout);"
(kind: test)
autopkgtest [22:42:19]: test run-tests: -----------------------]

https://ci.debian.net/data/autopkgtest/unstable/amd64/x/xmds2/8014967/log.gz

('Config log saved to ',
'/tmp/autopkgtest-lxc.2agslbhv/downtmp/build.3a8/src/debian/xmds-user-data/waf_configure/config.log')
test_RbGSdipoles (__main__.main.<locals>.ScriptTestCase)
fast/RbGSdipoles.xmds ... ok
test_bessel_cosine_evolution (__main__.main.<locals>.ScriptTestCase)
fast/bessel_cosine_evolution.xmds ... ok
test_bessel_cosine_groundstate (__main__.main.<locals>.ScriptTestCase)
fast/bessel_cosine_groundstate.xmds ... ok
test_cpc_example4 (__main__.main.<locals>.ScriptTestCase)
fast/cpc_example4.xmds ... ok
test_eigenvalues (__main__.main.<locals>.ScriptTestCase)
fast/eigenvalues.xmds ... ok
test_groundstate (__main__.main.<locals>.ScriptTestCase)
fast/groundstate.xmds ... ok
test_lorenz (__main__.main.<locals>.ScriptTestCase)
fast/lorenz.xmds ... ok
test_tla (__main__.main.<locals>.ScriptTestCase)
fast/tla.xmds ... ok
test_transverse_integration_in_vector_initialisation
(__main__.main.<locals>.ScriptTestCase)
fast/transverse_integration_in_vector_initialisation.xmds ... ok
test_vibstring_circle_spectral (__main__.main.<locals>.ScriptTestCase)
fast/vibstring_circle_spectral.xmds ... ok
test_constant_complex_ip (__main__.main.<locals>.ScriptTestCase)
operators/constant_complex_ip.xmds ... ok
test_constant_complex_ip_2d (__main__.main.<locals>.ScriptTestCase)
operators/constant_complex_ip_2d.xmds ... ok
test_constant_complex_separated_ip_2d
(__main__.main.<locals>.ScriptTestCase)
operators/constant_complex_separated_ip_2d.xmds ... ok
test_constant_double_ip (__main__.main.<locals>.ScriptTestCase)
operators/constant_double_ip.xmds ... ok
test_constant_ex (__main__.main.<locals>.ScriptTestCase)
operators/constant_ex.xmds ... ok
test_constant_ex_arbitrary_code (__main__.main.<locals>.ScriptTestCase)
operators/constant_ex_arbitrary_code.xmds ... ok
test_constant_ex_arbitrary_order (__main__.main.<locals>.ScriptTestCase)
operators/constant_ex_arbitrary_order.xmds ... ok
test_constant_ex_arbitrary_order2 (__main__.main.<locals>.ScriptTestCase)
operators/constant_ex_arbitrary_order2.xmds ... ok
test_constant_real_ip_2d (__main__.main.<locals>.ScriptTestCase)
operators/constant_real_ip_2d.xmds ... ok
test_cross_propagation (__main__.main.<locals>.ScriptTestCase)
operators/cross_propagation.xmds ... ok
test_cross_propagation2 (__main__.main.<locals>.ScriptTestCase)
operators/cross_propagation2.xmds ... ok
test_cross_propagation_right (__main__.main.<locals>.ScriptTestCase)
operators/cross_propagation_right.xmds ... ok
test_cross_propagation_sic (__main__.main.<locals>.ScriptTestCase)
operators/cross_propagation_sic.xmds ... ok
test_cross_propagation_sic_right (__main__.main.<locals>.ScriptTestCase)
operators/cross_propagation_sic_right.xmds ... ok
test_highdimcrossprop (__main__.main.<locals>.ScriptTestCase)
operators/highdimcrossprop.xmds ... ok
test_nonconstant_complex_ip (__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_complex_ip.xmds ... ok
test_nonconstant_complex_ip_2d (__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_complex_ip_2d.xmds ... ok
test_nonconstant_complex_separated_ip_2d
(__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_complex_separated_ip_2d.xmds ... ok
test_nonconstant_double_ip (__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_double_ip.xmds ... ok
test_nonconstant_ex (__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_ex.xmds ... ok
test_nonconstant_real_ip_2d (__main__.main.<locals>.ScriptTestCase)
operators/nonconstant_real_ip_2d.xmds ... ok
test_bug_adaptive_timestep_hang (__main__.main.<locals>.ScriptTestCase)
integrators/bug_adaptive_timestep_hang.xmds ... ok
test_vibstring_ark45 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_ark45.xmds ... ok
test_vibstring_ark89 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_ark89.xmds ... ok
test_vibstring_mm (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_mm.xmds ... ok
test_vibstring_re (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_re.xmds ... ok
test_vibstring_rk4 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk4.xmds ... ok
test_vibstring_rk45 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk45.xmds ... ok
test_vibstring_rk89 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk89.xmds ... ok
test_vibstring_rk9 (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_rk9.xmds ... ok
test_vibstring_si (__main__.main.<locals>.ScriptTestCase)
integrators/vibstring_si.xmds ... ok
test_initialisation_order (__main__.main.<locals>.ScriptTestCase)
vectors/initialisation_order.xmds ... ok
test_initialisation_order_chunked (__main__.main.<locals>.ScriptTestCase)
vectors/initialisation_order_chunked.xmds ... ok
test_partial_integration_computed_vector
(__main__.main.<locals>.ScriptTestCase)
vectors/partial_integration_computed_vector.xmds ... ok
test_bessel_cosine_groundstate (__main__.main.<locals>.ScriptTestCase)
openmp/bessel_cosine_groundstate.xmds ... ok
test_diffusion_openmp (__main__.main.<locals>.ScriptTestCase)
openmp/diffusion_openmp.xmds ... ok
test_diffusion_openmp_chunked (__main__.main.<locals>.ScriptTestCase)
openmp/diffusion_openmp_chunked.xmds ... ok
test_eigenvalues (__main__.main.<locals>.ScriptTestCase)
openmp/eigenvalues.xmds ... ok
test_hermitegauss_transform_2d_openmp
(__main__.main.<locals>.ScriptTestCase)
openmp/hermitegauss_transform_2d_openmp.xmds ... ok
test_hermitegauss_transform_2d_openmp_small
(__main__.main.<locals>.ScriptTestCase)
openmp/hermitegauss_transform_2d_openmp_small.xmds ... ok
test_kubo_integer_dimensions_openmp (__main__.main.<locals>.ScriptTestCase)
openmp/kubo_integer_dimensions_openmp.xmds ... ok
test_lorenz_openmp (__main__.main.<locals>.ScriptTestCase)
openmp/lorenz_openmp.xmds ... ok
test_openmp_dft (__main__.main.<locals>.ScriptTestCase)
openmp/openmp_dft.xmds ... ok
test_openmp_dft_hdf5 (__main__.main.<locals>.ScriptTestCase)
openmp/openmp_dft_hdf5.xmds ... ok
test_openmp_dft_small (__main__.main.<locals>.ScriptTestCase)
openmp/openmp_dft_small.xmds ... ok
test_openmp_highdimcrossprop (__main__.main.<locals>.ScriptTestCase)
openmp/openmp_highdimcrossprop.xmds ... ok
test_partial_integration_computed_vector
(__main__.main.<locals>.ScriptTestCase)
openmp/partial_integration_computed_vector.xmds ... autopkgtest
[23:30:10]: ERROR: timed out on command "su -s /bin/bash debci -c set
-e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true;  .
~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.2agslbhv/downtmp/build.3a8/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.2agslbhv/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.2agslbhv/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=48; unset
LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY
LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.2agslbhv/downtmp/build.3a8/src/debian/tests/run-tests;
touch /tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-stdout
/tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-stderr;
/tmp/autopkgtest-lxc.2agslbhv/downtmp/build.3a8/src/debian/tests/run-tests
2> >(tee -a /tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-stderr >&2)
> >(tee -a /tmp/autopkgtest-lxc.2agslbhv/downtmp/run-tests-stdout);"
(kind: test)
autopkgtest [23:30:11]: test run-tests: -----------------------]

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