Bug#973482: petsc: f951: out of memory allocating 140 bytes after a total of 1874202624 bytes

Sebastian Ramacher sramacher at debian.org
Sat Oct 31 14:22:10 GMT 2020


Source: petsc
Version: 3.14.0+dfsg1-3
Severity: serious
Tags: ftbfs sid bullseye
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramacher at debian.org

The build on mipsel failed:
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0   -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi    -MMD -MP /<<PKGBUILDDIR>>/src/sys/classes/bag/f2003-src/fsrc/bagenum.F90 -o mipsel-linux-gnu-real-debug/obj/sys/classes/bag/f2003-src/fsrc/bagenum.o -J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpicc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2  -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi  -Wdate-time -D_FORTIFY_SOURCE=2   -MMD -MP /<<PKGBUILDDIR>>/src/tao/leastsquares/impls/brgn/brgn.c -o mipsel-linux-gnu-real-debug/obj/tao/leastsquares/impls/brgn/brgn.o
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0   -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi    -MMD -MP /<<PKGBUILDDIR>>/src/sys/objects/f2003-src/fsrc/optionenum.F90 -o mipsel-linux-gnu-real-debug/obj/sys/objects/f2003-src/fsrc/optionenum.o -J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpicc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2  -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi  -Wdate-time -D_FORTIFY_SOURCE=2   -MMD -MP /<<PKGBUILDDIR>>/src/tao/leastsquares/impls/pounders/pounders.c -o mipsel-linux-gnu-real-debug/obj/tao/leastsquares/impls/pounders/pounders.o
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0   -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi    -MMD -MP /<<PKGBUILDDIR>>/src/vec/f90-mod/petscvecmod.F90 -o mipsel-linux-gnu-real-debug/obj/vec/f90-mod/petscvecmod.o -J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0   -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi    -MMD -MP /<<PKGBUILDDIR>>/src/mat/f90-mod/petscmatmod.F90 -o mipsel-linux-gnu-real-debug/obj/mat/f90-mod/petscmatmod.o -J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
|
| f951: out of memory allocating 140 bytes after a total of 1874202624 bytes
| gmake[5]: *** [gmakefile:207: mipsel-linux-gnu-real-debug/obj/mat/f90-mod/petscmatmod.o] Error 1
| gmake[4]: *** [/<<PKGBUILDDIR>>/lib/petsc/conf/rules:49: libs] Error 2
| **************************ERROR*************************************
|   Error during compile, you need to increase the memory allocated to the VM and rerun 
| ********************************************************************
| gmake[3]: *** [makefile:40: all] Error 1

See
https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.14.0%2Bdfsg1-3&stamp=1604119704&raw=0

Cheers
-- 
Sebastian Ramacher
-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 833 bytes
Desc: not available
URL: <http://alioth-lists.debian.net/pipermail/debian-science-maintainers/attachments/20201031/e6a889ed/attachment.sig>


More information about the debian-science-maintainers mailing list