Bug#997475: hyperspy: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

Sat Oct 23 21:39:45 BST 2021

Source: hyperspy
Version: 1.6.1-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20211023 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):

> =========================== short test summary info ============================
> SKIPPED [1] hyperspy/tests/io/test_mrcz.py:32: mrcz not installed
> SKIPPED [1] hyperspy/tests/io/test_phenom.py:26: skipping test_phenom tests, requires imagecodecs
> SKIPPED [1] hyperspy/tests/io/test_usid.py:10: pyUSID not installed
> SKIPPED [1] hyperspy/tests/datasets/test_eelsdb.py:39: Unable to connect to EELSdb
> SKIPPED [1] hyperspy/tests/datasets/test_eelsdb.py:95: Unable to connect to EELSdb
> SKIPPED [1] hyperspy/tests/drawing/test_mpl_testing_setup.py:48: No --mpl command line option
> SKIPPED [1] hyperspy/tests/io/test_edax.py:71: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:83: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:114: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:124: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:151: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:161: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:190: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:200: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:227: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:259: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:287: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:309: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:314: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:352: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:384: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:412: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:434: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:439: download of EDAX test files failed: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection refused')))
> SKIPPED [1] hyperspy/tests/io/test_bruker.py:191: could not import 'hyperspy.io_plugins.unbcf_fast': No module named 'hyperspy.io_plugins.unbcf_fast'
> SKIPPED [1] hyperspy/tests/io/test_tiff.py:609: imagecodecs is required
> SKIPPED [1] hyperspy/tests/signal/test_2D.py:337: LazySignals do not support folding
> SKIPPED [1] hyperspy/tests/signal/test_2D.py:345: LazySignals do not support folding
> SKIPPED [4] hyperspy/tests/signal/test_1D_tools.py:266: Ignored on non-Windows OS
> SKIPPED [32] hyperspy/tests/signal/test_find_peaks2D.py:111: Parallel=True is ignored for lazy signal.
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:42: Inplace not supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:64: Inplace not supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:107: Inplace not supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:118: Inplace not supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_subclass_conversion.py:97: Dask array flags not supported
> SKIPPED [1] hyperspy/tests/signal/test_signal_subclass_conversion.py:114: Dask array flags not supported
> SKIPPED [1] hyperspy/tests/signal/test_map_method.py:339: Not compatible with lazy signal.
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:207: LazySignals do not support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:241: LazySignals do not support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:261: LazySignals do not support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_transpose.py:119: LazySignal optimization is tested in test_lazy_tranpose_rechunk
> XFAIL hyperspy/tests/drawing/test_utils.py::test_create_figure
>   reason: agg backend does not support on_close event.
> XFAIL hyperspy/tests/io/test_hdf5.py::TestLoadingNewSavedMetadata::test_binary_string
>   dill is not guaranteed to load across Python versions
> XPASS hyperspy/tests/samfire/test_samfire.py::test_multiprocessed Sometimes the number of failed pixels > 3 when using multiprocessing. Unknown reason
> FAILED hyperspy/tests/io/test_blockfile.py::test_load_readonly - Failed: DID ...
> = 1 failed, 3722 passed, 75 skipped, 2 xfailed, 1 xpassed, 428 warnings in 229.61s (0:03:49) =
> E: pybuild pybuild:354: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_hyperspy/build; python3.9 -m pytest 
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

The full build log is available from:
http://qa-logs.debian.net/2021/10/23/hyperspy_1.6.1-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.