Bug#984049: enblend-enfuse: ftbfs with GCC-11

Sat Apr 2 19:55:57 BST 2022

Control: tags -1 patch

On Wed, Jan 12, 2022 at 08:40:13PM +0100, Andreas Tille wrote:
> > With those two patches it compiles, but then 22 tests fail, all with the
> > same error in C++ template syntax I am not familiar with. They all fail
> > because of a single discrepancy between Python and C++ representation of the
> > constructArrayFromAxistags function:
> > 
> > > Boost.Python.ArgumentError: Python argument types in
> > >     vigra.vigranumpycore.constructArrayFromAxistags(type, tuple, numpy.dtype[float32], AxisTags, bool)
> > > did not match C++ signature:
> > >     constructArrayFromAxistags(boost::python::api::object, vigra::ArrayVector<long, std::allocator<long> >, NPY_TYPES, vigra::AxisTags, bool)
> 
> I can confirm these test issues.  Any help would be welcome.

With the attached patch the package built here, cf. the also-attached
libvigraimpex_1.11.1+dfsg-9_amd64-2022-04-02T17:52:42Z.build.

A debdiff comparing the resulting binary packages against those from
1.11.1+dfsg-8 looks sane to me, cf. 984049.debdiff.

I successfully tested building hugin and enblend-enfuse against the
resulting binary packages, local logs available on demand.

Please note that further patches might be required in the future, see
e.g. <https://github.com/ukoethe/vigra/pull/500/files>. However, at the
moment the build fails when I apply that patch ...

Best regards,
Flo
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sbuild (Debian sbuild) 0.81.2 (31 January 2021) on fernst.no-ip.org

+==============================================================================+
| libvigraimpex 1.11.1+dfsg-9 (amd64)          Sat, 02 Apr 2022 17:52:42 +0000 |
+==============================================================================+

Package: libvigraimpex
Version: 1.11.1+dfsg-9
Source Version: 1.11.1+dfsg-9
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

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/home/fernst/debian/temp/libvigraimpex/libvigraimpex_1.11.1+dfsg-9.dsc exists in /home/fernst/debian/temp/libvigraimpex; copying to chroot
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  libxapian30 libxaw7 libxmu6 libxpm4 libxt6 libzzip-0-13 poppler-data
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Get:64 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB]
Get:65 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get:66 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2021.20210626.59705-1 [65.1 kB]
Get:67 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2021.20210626.59705-1 [80.5 kB]
Get:68 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.11+ds1-1 [336 kB]
Get:69 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libtexlua53 amd64 2021.20210626.59705-1 [132 kB]
Get:70 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libtexluajit2 amd64 2021.20210626.59705-1 [267 kB]
Get:71 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libtiff5-dev amd64 4.3.0-6 [130 kB]
Get:72 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libxt6 amd64 1:1.2.1-1 [189 kB]
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Get:74 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB]
Get:75 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB]
Get:76 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB]
Get:77 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 preview-latex-style all 12.2-1 [201 kB]
Get:78 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:79 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB]
Get:80 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-tz all 2022.1-1 [34.8 kB]
Get:81 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:82 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-certifi all 2020.6.20-1 [151 kB]
Get:83 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-chardet all 4.0.0-1 [99.0 kB]
Get:84 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:85 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-roman all 3.3-1 [10.7 kB]
Get:86 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:87 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-idna all 3.3-1 [39.4 kB]
Get:88 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.3.0-1 [6360 B]
Get:89 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.0.3-1 [121 kB]
Get:90 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-nose all 1.3.7-8 [133 kB]
Get:91 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.21.5-1 [3757 kB]
Get:92 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.0.7-1 [139 kB]
Get:93 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-packaging all 21.3-1 [34.1 kB]
Get:94 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-3 [17.5 kB]
Get:95 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-urllib3 all 1.26.9-1 [116 kB]
Get:96 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:97 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:98 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 sphinx-common all 4.3.2-1 [629 kB]
Get:99 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 python3-sphinx all 4.3.2-1 [533 kB]
Get:100 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:101 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2021.20210626.59705-1 [10.1 MB]
Get:102 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:103 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-base all 2021.20220204-1 [21.2 MB]
Get:104 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2021.20220204-1 [1160 kB]
Get:105 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2021.20220204-1 [14.4 MB]
Get:106 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-pictures all 2021.20220204-1 [8734 kB]
Get:107 http://127.0.0.1:3142/deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2021.20220204-1 [14.3 MB]
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.10.0-13-amd64 #1 SMP Debian 5.10.106-1 (2022-03-17) amd64 (x86_64)
Toolchain package versions: binutils_2.38-3 dpkg-dev_1.21.7 g++-11_11.2.0-19 gcc-11_11.2.0-19 libc6-dev_2.33-7 libstdc++-11-dev_11.2.0-19 libstdc++6_12-20220319-1 linux-libc-dev_5.16.18-1
Package versions: adduser_3.121 adwaita-icon-theme_42~really41.0-1 apt_2.4.4 autoconf_2.71-2 autoconf-archive_20210219-2.1 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3 binutils-common_2.38-3 binutils-x86-64-linux-gnu_2.38-3 bsdextrautils_2.37.3-1+b1 bsdutils_1:2.37.3-1+b1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 ccache_4.6-1 cdbs_0.4.163 cmake_3.23.0-1 cmake-data_3.23.0-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-19 dash_0.5.11+git20210903+057cd650a4ed-8 dbus_1.14.0-1 dbus-bin_1.14.0-1 dbus-daemon_1.14.0-1 dbus-session-bus-common_1.14.0-1 dbus-system-bus-common_1.14.0-1 dbus-user-session_1.14.0-1 dconf-gsettings-backend_0.40.0-3 dconf-service_0.40.0-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dmsetup_2:1.02.175-2.1 docbook_4.5-9 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+

Unpack source
-------------

Format: 3.0 (quilt)
Source: libvigraimpex
Binary: libvigraimpex-dev, libvigraimpex11, libvigraimpex-doc, python3-vigra, python-vigra-doc
Architecture: any all
Version: 1.11.1+dfsg-9
Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
Uploaders: Andreas Metzler <ametzler at debian.org>
Homepage: https://ukoethe.github.io/vigra/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/science-team/libvigraimpex
Vcs-Git: https://salsa.debian.org/science-team/libvigraimpex.git
Build-Depends: cmake, debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, libboost-python-dev, libfftw3-dev, libhdf5-dev, libjpeg-dev, libopenexr-dev, libpng-dev, libtiff5-dev, python3-dev, python3-nose, libboost-thread-dev
Build-Depends-Indep: dh-sequence-sphinxdoc, doxygen, ghostscript, python3, python3-sphinx, texlive-latex-base, texlive-latex-extra
Package-List:
 libvigraimpex-dev deb libdevel optional arch=any
 libvigraimpex-doc deb doc optional arch=all
 libvigraimpex11 deb libs optional arch=any
 python-vigra-doc deb doc optional arch=all
 python3-vigra deb python optional arch=any
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Checksums-Sha256:
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Files:
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 83c1d530e48a095ec9930fe39c1cc57d 21920 libvigraimpex_1.11.1+dfsg-9.debian.tar.xz

dpkg-source: warning: extracting unsigned source package (libvigraimpex_1.11.1+dfsg-9.dsc)
dpkg-source: info: extracting libvigraimpex in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libvigraimpex_1.11.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking libvigraimpex_1.11.1+dfsg-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_sphinx.ext.pngmath.patch
dpkg-source: info: applying 13_disable-tests-which-would-need-lenna-images.diff
dpkg-source: info: applying 16_docs-no-footer-timestamp.diff
dpkg-source: info: applying 19_docsrc-out-of-source.diff
dpkg-source: info: applying 22_docsrc-paths.diff
dpkg-source: info: applying 25_vigra-config-docdir.diff
dpkg-source: info: applying 28_removed-static-docs.diff
dpkg-source: info: applying 31_multi_convolution_fix_incomplete_template_parameter.patch
dpkg-source: info: applying 34_link-with-pthread.patch
dpkg-source: info: applying 37_vigra-1.11.1.py37.patch
dpkg-source: info: applying 40_cmake-add-boost_python-MAJOR-MINOR-fixes-445.patch
dpkg-source: info: applying 43_ftbfs-lenna-removal.diff
dpkg-source: info: applying 46_ftbfs-python3-doc-generation.diff
dpkg-source: info: applying 47_fileencoding-utf-8.diff
dpkg-source: info: applying 48_sphinx4_error.diff
dpkg-source: info: applying c++17conf.patch
dpkg-source: info: applying python_3.10_support.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CCACHE_COMPRESS=1
CCACHE_DIR=/var/cache/pbuilder/ccache
CCACHE_UMASK=002
DEB_BUILD_OPTIONS=parallel=9
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LC_COLLATE=de_DE.UTF-8
LC_MEASUREMENT=de_DE.UTF-8
LC_MESSAGES=C
LC_MONETARY=de_DE.UTF-8
LC_NUMERIC=de_DE.UTF-8
LC_TIME=de_DE.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=fernst
PATH=/usr/lib/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=fernst
SCHROOT_SESSION_ID=unstable-amd64-sbuild-c49d523d-9e38-459c-a894-19962a4db211
SCHROOT_UID=1000
SCHROOT_USER=fernst
SHELL=/bin/sh
USER=fernst

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot
dpkg-buildpackage: info: source package libvigraimpex
dpkg-buildpackage: info: source version 1.11.1+dfsg-9
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Andreas Metzler <ametzler at debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --builddirectory=obj.x86_64-linux-gnu
   dh_auto_clean -O--builddirectory=obj.x86_64-linux-gnu
   dh_autoreconf_clean -O--builddirectory=obj.x86_64-linux-gnu
   dh_clean -O--builddirectory=obj.x86_64-linux-gnu
 dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building libvigraimpex using existing ./libvigraimpex_1.11.1+dfsg.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building libvigraimpex in libvigraimpex_1.11.1+dfsg-9.debian.tar.xz
dpkg-source: info: building libvigraimpex in libvigraimpex_1.11.1+dfsg-9.dsc
 debian/rules binary
dh binary --builddirectory=obj.x86_64-linux-gnu
   dh_update_autotools_config -O--builddirectory=obj.x86_64-linux-gnu
   dh_autoreconf -O--builddirectory=obj.x86_64-linux-gnu
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --verbose -O--builddirectory=obj.x86_64-linux-gnu -- \
	-DLIB_SUFFIX="/x86_64-linux-gnu/" \
	-DWITH_OPENEXR=ON \
	-DPYTHON_EXECUTABLE=/usr/bin/python3 \
	-DPYTHON_INCLUDE_DIR=/usr/include/python3.10 \

	install -d /<<BUILDDIR>>/libvigraimpex-1.11.1\+dfsg/debian/.debhelper/generated/_source/home
	install -d obj.x86_64-linux-gnu
	cd obj.x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLIB_SUFFIX=/x86_64-linux-gnu/ -DWITH_OPENEXR=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYTHON_INCLUDE_DIR=/usr/include/python3.10 ..
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.

-- The C compiler identification is GNU 11.2.0
-- The CXX compiler identification is GNU 11.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib/ccache/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/ccache/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring VIGRA version 1.11.1
-- Checking template recursion depth: ok
-- Searching for ZLIB
--    in default locations
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Searching for TIFF
--    in default locations
-- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.3.0")  
-- Searching for JPEG
--    in default locations
-- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "62") 
-- Searching for PNG
--    in default locations
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") 
-- Searching for FFTW3
--    in default locations
-- Found FFTW3: /usr/lib/x86_64-linux-gnu/libfftw3.so  
-- Searching for FFTW3F
--    in default locations
-- Found FFTW3F: /usr/lib/x86_64-linux-gnu/libfftw3f.so  
-- Searching for OpenEXR
--    in default locations
-- Found OpenEXR: /usr/lib/x86_64-linux-gnu/libHalf.so  
-- Searching for HDF5
--    in default locations
--    Checking HDF5 version (at least 1.8): ok
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so  
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen 
-- Found PythonInterp: /usr/bin/python3 (found version "3.10.4") 
-- Searching for Boost (at least version 1.40.0)
--    in default locations
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.40.0")  
CMake Deprecation Warning at config/VigraDetectThreading.cmake:6 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
Call Stack (most recent call first):
  CMakeLists.txt:166 (include)

-- Checking for threading support:   std::thread
--     (added compiler flags: -pthread -std=c++11)
-- Detected C++ version: 201103
-- Checking VIGRANUMPY_DEPENDENCIES
-- Using Python 3.10.4 at /usr/bin/python3
<string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
-- Found Python includes:  /usr/include/python3.10
<string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
<string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
-- Found Python library: /usr/lib/x86_64-linux-gnu/libpython3.10.so
-- Found boost_python library: /usr/lib/x86_64-linux-gnu/libboost_python310.so
<string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
-- Searching for Python numpy: ok
-- Searching for Python nosetests: ok
-- Searching for sphinx documentation generator: ok
-- Found VIGRANUMPY_DEPENDENCIES: TRUE  
CMake Deprecation Warning at config/VigraAddTest.cmake:66 (cmake_policy):
  The OLD behavior for policy CMP0026 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
  test/adjacency_list_graph/CMakeLists.txt:1 (VIGRA_ADD_TEST)