Bug#1008225: dolfin: autopkgtest failure: timeout
Drew Parsons
dparsons at debian.org
Sun Apr 3 11:04:32 BST 2022
Source: dolfin
Version: 2019.2.0~git20210928.3eacdb4-3
Followup-For: Bug #1008225
Control: forwarded -1 https://bitbucket.org/fenics-project/dolfin/issues/1130
I can reproduce the error locally. Verbose flag exposes the specific
failing tests:
$ mpirun -n 3 pytest-3 -v test_function.py
=============================================================================================== test session starts ===============================================================================================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0 -- /usr/bin/python3
=============================================================================================== test session starts ===============================================================================================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0 -- /usr/bin/python3
=============================================================================================== test session starts ===============================================================================================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0 -- /usr/bin/python3
cachedir: .pytest_cache
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/tests/output/.hypothesis/examples')
rootdir: /build/tests/output
plugins: asyncio-0.18.2, xvfb-2.0.0, arraydiff-0.5.0, cov-3.0.0, hypothesis-6.36.0, flaky-3.7.0, astropy-header-0.2.1, remotedata-0.3.3, filter-subpackage-0.1.1, doctestplus-0.12.0, mpi-0.6, openfiles-0.5.0, mock-3.6.1
asyncio: mode=legacy
collecting ... cachedir: .pytest_cache
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/tests/output/.hypothesis/examples')
rootdir: /build/tests/output
plugins: asyncio-0.18.2, xvfb-2.0.0, arraydiff-0.5.0, cov-3.0.0, hypothesis-6.36.0, flaky-3.7.0, astropy-header-0.2.1, remotedata-0.3.3, filter-subpackage-0.1.1, doctestplus-0.12.0, mpi-0.6, openfiles-0.5.0, mock-3.6.1
asyncio: mode=legacy
collecting ... cachedir: .pytest_cache
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/tests/output/.hypothesis/examples')
rootdir: /build/tests/output
plugins: asyncio-0.18.2, xvfb-2.0.0, arraydiff-0.5.0, cov-3.0.0, hypothesis-6.36.0, flaky-3.7.0, astropy-header-0.2.1, remotedata-0.3.3, filter-subpackage-0.1.1, doctestplus-0.12.0, mpi-0.6, openfiles-0.5.0, mock-3.6.1
asyncio: mode=legacy
collected 19 items
collected 19 items
collected 19 items
test_function.py::test_name_argument
test_function.py::test_name_argument PASSED [ 5%]PASSED [ 5%]PASSED [ 5%]
test_function.py::test_in_function_space
test_function.py::test_in_function_space test_function.py::test_in_function_space PASSED [ 10%]
test_function.py::test_compute_vertex_values PASSED [ 10%]PASSED [ 10%]
test_function.py::test_compute_vertex_values
test_function.py::test_compute_vertex_values PASSED [ 15%]PASSED [ 15%]PASSED [ 15%]
test_function.py::test_assign
test_function.py::test_assign
test_function.py::test_assign PASSED [ 21%]PASSED [ 21%]PASSED [ 21%]
test_function.py::test_axpy
test_function.py::test_axpy
test_function.py::test_axpy PASSED [ 26%]PASSED [ 26%]PASSED [ 26%]
test_function.py::test_call
test_function.py::test_call
test_function.py::test_call ERROR [ 31%]
test_function.py::test_constant_float_conversion PASSED [ 36%]
test_function.py::test_real_function_float_conversion1 ERROR [ 31%]
test_function.py::test_constant_float_conversion PASSED [ 36%]
test_function.py::test_real_function_float_conversion1 ERROR [ 42%]ERROR [ 42%]
test_function.py::test_real_function_float_conversion2
test_function.py::test_real_function_float_conversion2 ERROR [ 47%]
test_function.py::test_real_function_float_conversion3 ERROR [ 47%]
test_function.py::test_real_function_float_conversion3 ERROR [ 52%]
test_function.py::test_scalar_conditions ERROR [ 52%]
test_function.py::test_scalar_conditions ERROR [ 57%]
test_function.py::test_interpolation_mismatch_rank0 ERROR [ 57%]
test_function.py::test_interpolation_mismatch_rank0 ^\Quit
I've logged the error upstream.
Since dolfin is considered deprecated (superseded by dolfinx), I don't
expect the problem to be solved upstream (alternatively, the problem
can be considered fixed already: test_function.py is passing for
dolfinx).
So I'll work around the problem by skipping test_function.py in the
MPI python unit tests.
The test passes in single process mode. It's only under MPI that the
test fails. These unit tests aren't directly designed to to run with
MPI. Running them with MPI would just provide additional evidence of
robustness, if they would all pass, but the failure here exposes the
limits of that "robustness" stress-testing.
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