Bug#1009431: skimage: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.9 3.10" returned exit code 13
Lucas Nussbaum
lucas at debian.org
Tue Apr 12 19:40:21 BST 2022
Source: skimage
Version: 0.18.3-2
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20220412 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # pass
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_test -O--buildsystem=pybuild -Npython3-skimage -Npython-skimage-doc
> I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest
> ============================= test session starts ==============================
> platform linux -- Python 3.9.12, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collected 6232 items / 4 skipped / 6228 selected
>
> skimage/_shared/tests/test_coord.py .................................... [ 0%]
> ...... [ 0%]
> skimage/_shared/tests/test_fast_exp.py . [ 0%]
> skimage/_shared/tests/test_geometry.py ... [ 0%]
> skimage/_shared/tests/test_interpolation.py . [ 0%]
> skimage/_shared/tests/test_safe_as_int.py .. [ 0%]
> skimage/_shared/tests/test_testing.py ..... [ 0%]
> skimage/_shared/tests/test_utils.py .................................... [ 1%]
> ............................... [ 1%]
> skimage/_shared/tests/test_version_requirements.py .... [ 2%]
> skimage/_shared/tests/test_warnings.py ......... [ 2%]
> skimage/color/tests/test_adapt_rgb.py ....... [ 2%]
> skimage/color/tests/test_colorconv.py .................................. [ 2%]
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> skimage/color/tests/test_colorlabel.py .................. [ 6%]
> skimage/color/tests/test_delta_e.py ........ [ 6%]
> skimage/data/tests/test_data.py ........s...........s.sssss [ 6%]
> skimage/draw/tests/test_draw.py ........................................ [ 7%]
> ........... [ 7%]
> skimage/draw/tests/test_draw3d.py ........ [ 7%]
> skimage/draw/tests/test_draw_nd.py ... [ 7%]
> skimage/draw/tests/test_polygon2mask.py . [ 7%]
> skimage/draw/tests/test_random_shapes.py .............. [ 7%]
> skimage/exposure/tests/test_exposure.py ................................ [ 8%]
> .................................... [ 9%]
> skimage/exposure/tests/test_histogram_matching.py ...... [ 9%]
> skimage/feature/tests/test_basic_features.py ..... [ 9%]
> skimage/feature/tests/test_blob.py ................ [ 9%]
> skimage/feature/tests/test_brief.py .............. [ 9%]
> skimage/feature/tests/test_canny.py ......... [ 9%]
> skimage/feature/tests/test_cascade.py . [ 9%]
> skimage/feature/tests/test_censure.py ........ [ 10%]
> skimage/feature/tests/test_corner.py ................................ [ 10%]
> skimage/feature/tests/test_daisy.py ....... [ 10%]
> skimage/feature/tests/test_haar.py ..................................... [ 11%]
> .................. [ 11%]
> skimage/feature/tests/test_hog.py ............ [ 11%]
> skimage/feature/tests/test_match.py ...... [ 11%]
> skimage/feature/tests/test_orb.py ............. [ 12%]
> skimage/feature/tests/test_peak.py ..................................... [ 12%]
> ...................... [ 12%]
> skimage/feature/tests/test_template.py .......... [ 13%]
> skimage/feature/tests/test_texture.py ........................... [ 13%]
> skimage/feature/tests/test_util.py ..... [ 13%]
> skimage/filters/tests/test_correlate.py ....... [ 13%]
> skimage/filters/tests/test_edges.py .................................... [ 14%]
> .................................. [ 14%]
> skimage/filters/tests/test_gabor.py ...... [ 14%]
> skimage/filters/tests/test_gaussian.py ................... [ 15%]
> skimage/filters/tests/test_lpi_filter.py .... [ 15%]
> skimage/filters/tests/test_median.py .............. [ 15%]
> skimage/filters/tests/test_ridges.py .............. [ 15%]
> skimage/filters/tests/test_thresholding.py ............................. [ 16%]
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> skimage/filters/tests/test_unsharp_mask.py ............................. [ 17%]
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> ....... [ 75%]
> skimage/filters/tests/test_window.py ................. [ 75%]
> skimage/future/graph/tests/test_rag.py .......... [ 76%]
> skimage/future/tests/test_trainable_segmentation.py .... [ 76%]
> skimage/graph/tests/test_anisotropy.py . [ 76%]
> skimage/graph/tests/test_connect.py . [ 76%]
> skimage/graph/tests/test_flexible.py . [ 76%]
> skimage/graph/tests/test_heap.py .. [ 76%]
> skimage/graph/tests/test_mcp.py ............... [ 76%]
> skimage/graph/tests/test_spath.py ... [ 76%]
> skimage/io/tests/test_collection.py ............ [ 76%]
> skimage/io/tests/test_colormixer.py ..................... [ 76%]
> skimage/io/tests/test_histograms.py .. [ 77%]
> skimage/io/tests/test_imageio.py ...... [ 77%]
> skimage/io/tests/test_io.py ...x.... [ 77%]
> skimage/io/tests/test_mpl_imshow.py ....... [ 77%]
> skimage/io/tests/test_multi_image.py ....... [ 77%]
> skimage/io/tests/test_pil.py .....F................F [ 77%]
> skimage/io/tests/test_plugin.py .... [ 77%]
> skimage/io/tests/test_plugin_util.py .......... [ 78%]
> skimage/io/tests/test_sift.py .. [ 78%]
> skimage/io/tests/test_tifffile.py .................... [ 78%]
> skimage/measure/tests/test_block.py ........ [ 78%]
> skimage/measure/tests/test_ccomp.py .................... [ 78%]
> skimage/measure/tests/test_entropy.py .. [ 78%]
> skimage/measure/tests/test_find_contours.py .............. [ 79%]
> skimage/measure/tests/test_fit.py ......................... [ 79%]
> skimage/measure/tests/test_label.py .... [ 79%]
> skimage/measure/tests/test_marching_cubes.py ......... [ 79%]
> skimage/measure/tests/test_moments.py ............ [ 79%]
> skimage/measure/tests/test_pnpoly.py .... [ 79%]
> skimage/measure/tests/test_polygon.py .. [ 80%]
> skimage/measure/tests/test_profile.py ......................... [ 80%]
> skimage/measure/tests/test_regionprops.py .............................. [ 80%]
> ................................. [ 81%]
> skimage/measure/tests/test_structural_similarity.py ................ [ 81%]
> skimage/metrics/tests/test_segmentation_metrics.py .... [ 81%]
> skimage/metrics/tests/test_set_metrics.py .............................. [ 82%]
> .............. [ 82%]
> skimage/metrics/tests/test_simple_metrics.py ...... [ 82%]
> skimage/metrics/tests/test_structural_similarity.py ................ [ 82%]
> skimage/morphology/tests/test_binary.py ................. [ 83%]
> skimage/morphology/tests/test_convex_hull.py ........ [ 83%]
> skimage/morphology/tests/test_extrema.py ...................... [ 83%]
> skimage/morphology/tests/test_flood_fill.py ................. [ 83%]
> skimage/morphology/tests/test_grey.py .......................... [ 84%]
> skimage/morphology/tests/test_max_tree.py ........ [ 84%]
> skimage/morphology/tests/test_misc.py ............... [ 84%]
> skimage/morphology/tests/test_reconstruction.py ............ [ 84%]
> skimage/morphology/tests/test_selem.py .......... [ 84%]
> skimage/morphology/tests/test_skeletonize.py ...................... [ 85%]
> skimage/morphology/tests/test_skeletonize_3d.py ................. [ 85%]
> skimage/morphology/tests/test_util.py .................... [ 85%]
> skimage/registration/tests/test_ilk.py ............. [ 86%]
> skimage/registration/tests/test_masked_phase_cross_correlation.py ...... [ 86%]
> ..... [ 86%]
> skimage/registration/tests/test_phase_cross_correlation.py ........... [ 86%]
> skimage/registration/tests/test_tvl1.py ....... [ 86%]
> skimage/restoration/tests/test_denoise.py .............................. [ 87%]
> ........................................................................ [ 88%]
> ............................ [ 88%]
> skimage/restoration/tests/test_inpaint.py ... [ 88%]
> skimage/restoration/tests/test_j_invariant.py ...... [ 88%]
> skimage/restoration/tests/test_restoration.py ....ssss [ 88%]
> skimage/restoration/tests/test_rolling_ball.py ...............s [ 89%]
> skimage/restoration/tests/test_unwrap.py ................ [ 89%]
> skimage/segmentation/tests/test_active_contour_model.py ....... [ 89%]
> skimage/segmentation/tests/test_boundaries.py ..... [ 89%]
> skimage/segmentation/tests/test_chan_vese.py ......... [ 89%]
> skimage/segmentation/tests/test_clear_border.py ...... [ 89%]
> skimage/segmentation/tests/test_expand_labels.py ................... [ 90%]
> skimage/segmentation/tests/test_felzenszwalb.py ...... [ 90%]
> skimage/segmentation/tests/test_join.py ................................ [ 90%]
> ............. [ 91%]
> skimage/segmentation/tests/test_morphsnakes.py ........ [ 91%]
> skimage/segmentation/tests/test_quickshift.py ... [ 91%]
> skimage/segmentation/tests/test_random_walker.py ................... [ 91%]
> skimage/segmentation/tests/test_slic.py .......................... [ 91%]
> skimage/segmentation/tests/test_watershed.py .................. [ 92%]
> skimage/transform/tests/test_finite_radon_transform.py . [ 92%]
> skimage/transform/tests/test_geometric.py .............................. [ 92%]
> . [ 92%]
> skimage/transform/tests/test_hough_transform.py ........................ [ 93%]
> ....... [ 93%]
> skimage/transform/tests/test_integral.py .... [ 93%]
> skimage/transform/tests/test_pyramids.py ................. [ 93%]
> skimage/transform/tests/test_radon_transform.py ........................ [ 93%]
> ........................................................................ [ 95%]
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> skimage/transform/tests/test_warps.py .................................. [ 96%]
> ................ [ 96%]
> skimage/util/tests/test_apply_parallel.py ................. [ 96%]
> skimage/util/tests/test_arraycrop.py ....... [ 96%]
> skimage/util/tests/test_arraypad.py .................................... [ 97%]
> ....................s...... [ 97%]
> skimage/util/tests/test_compare.py ..... [ 97%]
> skimage/util/tests/test_dtype.py ....................................... [ 98%]
> ........ [ 98%]
> skimage/util/tests/test_invert.py ...... [ 98%]
> skimage/util/tests/test_map_array.py ..... [ 98%]
> skimage/util/tests/test_montage.py ........ [ 98%]
> skimage/util/tests/test_random_noise.py .............. [ 99%]
> skimage/util/tests/test_regular_grid.py .... [ 99%]
> skimage/util/tests/test_shape.py .................. [ 99%]
> skimage/util/tests/test_unique_rows.py ..... [ 99%]
> skimage/viewer/tests/test_plugins.py ssssssssss [ 99%]
> skimage/viewer/tests/test_tools.py ssssss [ 99%]
> skimage/viewer/tests/test_utils.py ssss [ 99%]
> skimage/viewer/tests/test_viewer.py sss [ 99%]
> skimage/viewer/tests/test_widgets.py sssssss [100%]
>
> =================================== FAILURES ===================================
> _______________________ test_imread_index_png_with_alpha _______________________
>
> def test_imread_index_png_with_alpha():
> # The file `foo3x5x4indexed.png` was created with this array
> # (3x5 is (height)x(width)):
> dfoo = np.array([[[127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255]],
> [[192, 192, 255, 0],
> [192, 192, 255, 0],
> [0, 0, 255, 0],
> [0, 0, 255, 0],
> [0, 0, 255, 0]],
> [[0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255]]], dtype=np.uint8)
> > img = imread(fetch('data/foo3x5x4indexed.png'))
>
> skimage/io/tests/test_pil.py:107:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> skimage/io/_io.py:48: in imread
> img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
> skimage/io/manage_plugins.py:207: in call_plugin
> return func(*args, **kwargs)
> skimage/io/_plugins/pil_plugin.py:49: in imread
> return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
> skimage/io/_plugins/pil_plugin.py:100: in pil_to_ndarray
> grayscale = _palette_is_grayscale(image)
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
>
> pil_image = <PIL.PngImagePlugin.PngImageFile image mode=P size=5x3 at 0x7F846C29DE20>
>
> def _palette_is_grayscale(pil_image):
> """Return True if PIL image in palette mode is grayscale.
>
> Parameters
> ----------
> pil_image : PIL image
> PIL Image that is in Palette mode.
>
> Returns
> -------
> is_grayscale : bool
> True if all colors in image palette are gray.
> """
> if pil_image.mode != 'P':
> raise ValueError('pil_image.mode must be equal to "P".')
> # get palette as an array with R, G, B columns
> > palette = np.asarray(pil_image.getpalette()).reshape((256, 3))
> E ValueError: cannot reshape array of size 12 into shape (256,3)
>
> skimage/io/_plugins/pil_plugin.py:163: ValueError
> _____________________________ test_extreme_palette _____________________________
>
> def test_extreme_palette():
> > img = imread(fetch('data/green_palette.png'))
>
> skimage/io/tests/test_pil.py:298:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> skimage/io/_io.py:48: in imread
> img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
> skimage/io/manage_plugins.py:207: in call_plugin
> return func(*args, **kwargs)
> skimage/io/_plugins/pil_plugin.py:49: in imread
> return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
> skimage/io/_plugins/pil_plugin.py:100: in pil_to_ndarray
> grayscale = _palette_is_grayscale(image)
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
>
> pil_image = <PIL.PngImagePlugin.PngImageFile image mode=P size=320x240 at 0x7F846C29D9A0>
>
> def _palette_is_grayscale(pil_image):
> """Return True if PIL image in palette mode is grayscale.
>
> Parameters
> ----------
> pil_image : PIL image
> PIL Image that is in Palette mode.
>
> Returns
> -------
> is_grayscale : bool
> True if all colors in image palette are gray.
> """
> if pil_image.mode != 'P':
> raise ValueError('pil_image.mode must be equal to "P".')
> # get palette as an array with R, G, B columns
> > palette = np.asarray(pil_image.getpalette()).reshape((256, 3))
> E ValueError: cannot reshape array of size 57 into shape (256,3)
>
> skimage/io/_plugins/pil_plugin.py:163: ValueError
> =============================== warnings summary ===============================
> skimage/filters/rank/generic.py:1
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/filters/rank/generic.py:1: DeprecationWarning: invalid escape sequence \-
> """
>
> skimage/restoration/tests/test_denoise.py:17
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/restoration/tests/test_denoise.py:17: DeprecationWarning: invalid escape sequence \A
> DASK_WARNING = 'dask is required for parallel computation, but it is not available. Computation will be performed serially.|\A\Z'
>
> ../../../../../../usr/lib/python3.9/importlib/__init__.py:127
> /usr/lib/python3.9/importlib/__init__.py:127: UserWarning: Viewer requires Qt
> return _bootstrap._gcd_import(name[level:], package, level)
>
> .pybuild/cpython3_3.9/build/skimage/filters/tests/test_gabor.py: 1384 warnings
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/filters/_gabor.py:90: DeprecationWarning: `np.complex` is a deprecated alias for the builtin `complex`. To silence this warning, use `complex` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.complex128` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> g = np.zeros(y.shape, dtype=np.complex)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_pil.py::test_imread_separate_channels
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (3, 16, 8) and dtype 'float64' are stored as RGB with separate component planes. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' and 'planarconfig' parameters are specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'fastij' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'multifile' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'multifile_close' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape7-float32]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape8-int16]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape9-float64]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape12-float32]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape13-int16]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape14-float64]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.9/build/skimage/measure/tests/test_fit.py::test_ransac_is_data_valid
> .pybuild/cpython3_3.9/build/skimage/measure/tests/test_fit.py::test_ransac_is_model_valid
> .pybuild/cpython3_3.9/build/skimage/measure/tests/test_fit.py::test_ransac_sample_duplicates
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/measure/fit.py:879: UserWarning: No inliers found. Model not fitted
> warn("No inliers found. Model not fitted")
>
> .pybuild/cpython3_3.9/build/skimage/registration/tests/test_masked_phase_cross_correlation.py::test_cross_correlate_masked_over_axes
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/registration/tests/test_masked_phase_cross_correlation.py:225: DeprecationWarning: `np.complex` is a deprecated alias for the builtin `complex`. To silence this warning, use `complex` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.complex128` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> with_loop = np.empty_like(arr1, dtype=np.complex)
>
> .pybuild/cpython3_3.9/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float32-float32]
> .pybuild/cpython3_3.9/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float32-float64]
> .pybuild/cpython3_3.9/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float64-float32]
> .pybuild/cpython3_3.9/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float64-float64]
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/restoration/deconvolution.py:376: RuntimeWarning: invalid value encountered in true_divide
> relative_blur = np.where(conv < filter_epsilon, 0, image / conv)
>
> .pybuild/cpython3_3.9/build/skimage/segmentation/tests/test_clear_border.py::test_clear_border
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/skimage/segmentation/tests/test_clear_border.py:37: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> [1, 1, 1, 1, 1, 1, 1, 1, 1]]).astype(np.bool)
>
> .pybuild/cpython3_3.9/build/skimage/util/tests/test_apply_parallel.py: 18 warnings
> /usr/lib/python3/dist-packages/dask/array/overlap.py:642: FutureWarning: Default 'boundary' argument value will change from 'reflect' to 'none' in future versions from 2022.03.0 onwards. Use 'boundary="none"' to opt into the future behavior now or set 'boundary="reflect"' to maintain the current behavior going forward.
> warnings.warn(
>
> .pybuild/cpython3_3.9/build/skimage/util/tests/test_arraypad.py::TypeError1::test_check_wrong_pad_amount
> /usr/lib/python3/dist-packages/numpy/lib/arraypad.py:737: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
> pad_width = np.asarray(pad_width)
>
> -- Docs: https://docs.pytest.org/en/stable/warnings.html
> =========================== short test summary info ============================
> FAILED skimage/io/tests/test_pil.py::test_imread_index_png_with_alpha - Value...
> FAILED skimage/io/tests/test_pil.py::test_extreme_palette - ValueError: canno...
> = 2 failed, 6186 passed, 47 skipped, 1 xfailed, 1425 warnings in 170.91s (0:02:50) =
> E: pybuild pybuild:369: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest
> I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; python3.10 -m pytest
> ============================= test session starts ==============================
> platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collected 6232 items / 4 skipped / 6228 selected
>
> skimage/_shared/tests/test_coord.py .................................... [ 0%]
> ...... [ 0%]
> skimage/_shared/tests/test_fast_exp.py . [ 0%]
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> skimage/_shared/tests/test_testing.py ..... [ 0%]
> skimage/_shared/tests/test_utils.py .................................... [ 1%]
> ............................... [ 1%]
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> skimage/color/tests/test_adapt_rgb.py ....... [ 2%]
> skimage/color/tests/test_colorconv.py .................................. [ 2%]
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> skimage/draw/tests/test_draw.py ........................................ [ 7%]
> ........... [ 7%]
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> skimage/draw/tests/test_draw_nd.py ... [ 7%]
> skimage/draw/tests/test_polygon2mask.py . [ 7%]
> skimage/draw/tests/test_random_shapes.py .............. [ 7%]
> skimage/exposure/tests/test_exposure.py ................................ [ 8%]
> .................................... [ 9%]
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> .................. [ 11%]
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> ...................... [ 12%]
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> .................................. [ 14%]
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> skimage/future/tests/test_trainable_segmentation.py .... [ 76%]
> skimage/graph/tests/test_anisotropy.py . [ 76%]
> skimage/graph/tests/test_connect.py . [ 76%]
> skimage/graph/tests/test_flexible.py . [ 76%]
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> skimage/graph/tests/test_mcp.py ............... [ 76%]
> skimage/graph/tests/test_spath.py ... [ 76%]
> skimage/io/tests/test_collection.py ............ [ 76%]
> skimage/io/tests/test_colormixer.py ..................... [ 76%]
> skimage/io/tests/test_histograms.py .. [ 77%]
> skimage/io/tests/test_imageio.py ...... [ 77%]
> skimage/io/tests/test_io.py ...x.... [ 77%]
> skimage/io/tests/test_mpl_imshow.py ....... [ 77%]
> skimage/io/tests/test_multi_image.py ....... [ 77%]
> skimage/io/tests/test_pil.py .....F................F [ 77%]
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> skimage/io/tests/test_plugin_util.py .......... [ 78%]
> skimage/io/tests/test_sift.py .. [ 78%]
> skimage/io/tests/test_tifffile.py .................... [ 78%]
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> ..... [ 86%]
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> skimage/viewer/tests/test_widgets.py sssssss [100%]
>
> =================================== FAILURES ===================================
> _______________________ test_imread_index_png_with_alpha _______________________
>
> def test_imread_index_png_with_alpha():
> # The file `foo3x5x4indexed.png` was created with this array
> # (3x5 is (height)x(width)):
> dfoo = np.array([[[127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255],
> [127, 0, 255, 255]],
> [[192, 192, 255, 0],
> [192, 192, 255, 0],
> [0, 0, 255, 0],
> [0, 0, 255, 0],
> [0, 0, 255, 0]],
> [[0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255],
> [0, 31, 255, 255]]], dtype=np.uint8)
> > img = imread(fetch('data/foo3x5x4indexed.png'))
>
> skimage/io/tests/test_pil.py:107:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> skimage/io/_io.py:48: in imread
> img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
> skimage/io/manage_plugins.py:207: in call_plugin
> return func(*args, **kwargs)
> skimage/io/_plugins/pil_plugin.py:49: in imread
> return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
> skimage/io/_plugins/pil_plugin.py:100: in pil_to_ndarray
> grayscale = _palette_is_grayscale(image)
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
>
> pil_image = <PIL.PngImagePlugin.PngImageFile image mode=P size=5x3 at 0x7EFE0C340370>
>
> def _palette_is_grayscale(pil_image):
> """Return True if PIL image in palette mode is grayscale.
>
> Parameters
> ----------
> pil_image : PIL image
> PIL Image that is in Palette mode.
>
> Returns
> -------
> is_grayscale : bool
> True if all colors in image palette are gray.
> """
> if pil_image.mode != 'P':
> raise ValueError('pil_image.mode must be equal to "P".')
> # get palette as an array with R, G, B columns
> > palette = np.asarray(pil_image.getpalette()).reshape((256, 3))
> E ValueError: cannot reshape array of size 12 into shape (256,3)
>
> skimage/io/_plugins/pil_plugin.py:163: ValueError
> _____________________________ test_extreme_palette _____________________________
>
> def test_extreme_palette():
> > img = imread(fetch('data/green_palette.png'))
>
> skimage/io/tests/test_pil.py:298:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> skimage/io/_io.py:48: in imread
> img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
> skimage/io/manage_plugins.py:207: in call_plugin
> return func(*args, **kwargs)
> skimage/io/_plugins/pil_plugin.py:49: in imread
> return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
> skimage/io/_plugins/pil_plugin.py:100: in pil_to_ndarray
> grayscale = _palette_is_grayscale(image)
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
>
> pil_image = <PIL.PngImagePlugin.PngImageFile image mode=P size=320x240 at 0x7EFE0C354460>
>
> def _palette_is_grayscale(pil_image):
> """Return True if PIL image in palette mode is grayscale.
>
> Parameters
> ----------
> pil_image : PIL image
> PIL Image that is in Palette mode.
>
> Returns
> -------
> is_grayscale : bool
> True if all colors in image palette are gray.
> """
> if pil_image.mode != 'P':
> raise ValueError('pil_image.mode must be equal to "P".')
> # get palette as an array with R, G, B columns
> > palette = np.asarray(pil_image.getpalette()).reshape((256, 3))
> E ValueError: cannot reshape array of size 57 into shape (256,3)
>
> skimage/io/_plugins/pil_plugin.py:163: ValueError
> =============================== warnings summary ===============================
> skimage/data/__init__.py:8
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/data/__init__.py:8: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> from distutils.version import LooseVersion
>
> skimage/filters/rank/generic.py:1
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/filters/rank/generic.py:1: DeprecationWarning: invalid escape sequence '\-'
> """
>
> skimage/restoration/tests/test_denoise.py:17
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/restoration/tests/test_denoise.py:17: DeprecationWarning: invalid escape sequence '\A'
> DASK_WARNING = 'dask is required for parallel computation, but it is not available. Computation will be performed serially.|\A\Z'
>
> ../../../../../../usr/lib/python3.10/importlib/__init__.py:126
> /usr/lib/python3.10/importlib/__init__.py:126: UserWarning: Viewer requires Qt
> return _bootstrap._gcd_import(name[level:], package, level)
>
> .pybuild/cpython3_3.10/build/skimage/filters/tests/test_gabor.py: 1384 warnings
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/filters/_gabor.py:90: DeprecationWarning: `np.complex` is a deprecated alias for the builtin `complex`. To silence this warning, use `complex` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.complex128` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> g = np.zeros(y.shape, dtype=np.complex)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_pil.py::test_imread_separate_channels
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (3, 16, 8) and dtype 'float64' are stored as RGB with separate component planes. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' and 'planarconfig' parameters are specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'fastij' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'multifile' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::test_tifffile_kwarg_passthrough
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:825: DeprecationWarning: <tifffile.TiffFile> the 'multifile_close' argument is ignored
> with TiffFile(files, **kwargs_file) as tif:
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape7-float32]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape8-int16]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape9-float64]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape12-float32]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape13-int16]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[shape14-float64]
> /usr/lib/python3/dist-packages/tifffile/tifffile.py:901: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default unless the 'photometric' parameter is specified.
> result = tif.write(data, shape, dtype, **kwargs)
>
> .pybuild/cpython3_3.10/build/skimage/measure/tests/test_fit.py::test_ransac_is_data_valid
> .pybuild/cpython3_3.10/build/skimage/measure/tests/test_fit.py::test_ransac_is_model_valid
> .pybuild/cpython3_3.10/build/skimage/measure/tests/test_fit.py::test_ransac_sample_duplicates
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/measure/fit.py:879: UserWarning: No inliers found. Model not fitted
> warn("No inliers found. Model not fitted")
>
> .pybuild/cpython3_3.10/build/skimage/registration/tests/test_masked_phase_cross_correlation.py::test_cross_correlate_masked_over_axes
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/registration/tests/test_masked_phase_cross_correlation.py:225: DeprecationWarning: `np.complex` is a deprecated alias for the builtin `complex`. To silence this warning, use `complex` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.complex128` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> with_loop = np.empty_like(arr1, dtype=np.complex)
>
> .pybuild/cpython3_3.10/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float32-float32]
> .pybuild/cpython3_3.10/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float32-float64]
> .pybuild/cpython3_3.10/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float64-float32]
> .pybuild/cpython3_3.10/build/skimage/restoration/tests/test_restoration.py::test_richardson_lucy_filtered[float64-float64]
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/restoration/deconvolution.py:376: RuntimeWarning: invalid value encountered in true_divide
> relative_blur = np.where(conv < filter_epsilon, 0, image / conv)
>
> .pybuild/cpython3_3.10/build/skimage/segmentation/tests/test_clear_border.py::test_clear_border
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/skimage/segmentation/tests/test_clear_border.py:37: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
> Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
> [1, 1, 1, 1, 1, 1, 1, 1, 1]]).astype(np.bool)
>
> .pybuild/cpython3_3.10/build/skimage/util/tests/test_apply_parallel.py: 18 warnings
> /usr/lib/python3/dist-packages/dask/array/overlap.py:642: FutureWarning: Default 'boundary' argument value will change from 'reflect' to 'none' in future versions from 2022.03.0 onwards. Use 'boundary="none"' to opt into the future behavior now or set 'boundary="reflect"' to maintain the current behavior going forward.
> warnings.warn(
>
> .pybuild/cpython3_3.10/build/skimage/util/tests/test_arraypad.py::TypeError1::test_check_wrong_pad_amount
> /usr/lib/python3/dist-packages/numpy/lib/arraypad.py:737: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
> pad_width = np.asarray(pad_width)
>
> -- Docs: https://docs.pytest.org/en/stable/warnings.html
> =========================== short test summary info ============================
> FAILED skimage/io/tests/test_pil.py::test_imread_index_png_with_alpha - Value...
> FAILED skimage/io/tests/test_pil.py::test_extreme_palette - ValueError: canno...
> = 2 failed, 6186 passed, 47 skipped, 1 xfailed, 1426 warnings in 177.41s (0:02:57) =
> E: pybuild pybuild:369: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; python3.10 -m pytest
> dh_auto_test: error: pybuild --test -i python{version} -p "3.9 3.10" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2022/04/12/skimage_0.18.3-2_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220412;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220412&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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