Bug#1004556: libmpich-dev: The simplest MPI program compiled with mpich crashes
Julien Bigot
julien at julien-bigot.fr
Sun Jan 30 13:26:39 GMT 2022
Package: libmpich-dev
Version: 4.0-1
Severity: grave
Justification: renders package unusable
X-Debbugs-Cc: julien at julien-bigot.fr
Dear Maintainer,
When running the simplest MPI program,
```
#include <mpi.h>
int main(int argc, char* argv[])
{
MPI_Init(&argc, &argv);
MPI_Finalize();
return 0;
}
```
it crashes with output:
```
Abort(874106383): Fatal error in internal_Init: Other MPI error, error stack:
internal_Init(59)....: MPI_Init(argc=0x7ffc82ed999c, argv=0x7ffc82ed9990) failed
MPII_Init_thread(209):
MPID_Init(359).......:
MPIR_pmi_init(151)...: PMIX_Init returned -25
```
See attached reproduction log for full details
-- System Information:
Debian Release: bookworm/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'stable-debug'), (500, 'unstable'), (500, 'testing'), (500, 'stable'), (1, 'experimental-debug'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 5.15.0-3-amd64 (SMP w/8 CPU threads)
Locale: LANG=en_US.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=en_US
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages libmpich-dev depends on:
ii g++ 4:11.2.0-2
ii gfortran [gfortran-mod-15] 4:11.2.0-2
ii gfortran-10 [gfortran-mod-15] 10.3.0-14
ii gfortran-11 [gfortran-mod-15] 11.2.0-14
ii gfortran-9 [gfortran-mod-15] 9.4.0-4+b1
ii libmpich12 4.0-1
ii mpich 4.0-1
libmpich-dev recommends no packages.
libmpich-dev suggests no packages.
-- no debconf information
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docker run --rm -ti debian:sid [14:10]
Unable to find image 'debian:sid' locally
sid: Pulling from library/debian
48c02bc8c594: Pull complete
Digest: sha256:0e6e082a988ec6f880c76864c68705f47e4af4a319e0a56d5a1817282767336c
Status: Downloaded newer image for debian:sid
root at 23bd1ec5a8ce:/# apt update
Get:1 http://deb.debian.org/debian sid InRelease [165 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8898 kB]
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Reading package lists... Done
Building dependency tree... Done
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13 packages can be upgraded. Run 'apt list --upgradable' to see them.
root at 23bd1ec5a8ce:/# apt upgrade
Reading package lists... Done
Building dependency tree... 50%
Building dependency tree... Done
Reading state information... Done
Calculating upgrade... Done
The following packages will be upgraded:
bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libsmartcols1 libsystemd0 libudev1 libuuid1 mawk mount util-linux
13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.33-5 [2831 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.33-5 [834 kB]
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Get:8 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.7.3-4+b1 [1377 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.37.3-1+b1 [220 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.37.3-1+b1 [162 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 250.3-2 [178 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.37.3-1+b1 [85.4 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20200120-3+b1 [113 kB]
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debconf: delaying package configuration, since apt-utils is not installed
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debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/x86_64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
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Setting up libc6:amd64 (2.33-5) ...
debconf: unable to initialize frontend: Dialog
debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/x86_64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
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root at 23bd1ec5a8ce:/# apt install mpich mpich-dev
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
E: Unable to locate package mpich-dev
root at 23bd1ec5a8ce:/# apt install mpich libmpich-dev
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
The following additional packages will be installed:
binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-11 fontconfig-config fonts-dejavu-core g++ g++-11 gcc gcc-11 gfortran gfortran-11
hwloc-nox ibverbs-providers libasan6 libatomic1 libbinutils libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0
libcurl3-gnutls libdeflate0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfontconfig1 libfreetype6 libgcc-11-dev libgd3 libgfortran-11-dev libgfortran5
libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libisl23 libitm1 libjbig0 libjpeg62-turbo libldap-2.4-2 libldap-common liblsan0 libmd0 libmpc3 libmpfr6
libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl-dev libnuma1 libpciaccess0 libpmix2 libpng16-16 libpsl5 libquadmath0 librdmacm1 librtmp1 libsasl2-2
libsasl2-modules libsasl2-modules-db libssh2-1 libstdc++-11-dev libtiff5 libtirpc-dev libtsan0 libubsan1 libucx0 libwebp6 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxml2 libxnvctrl0 libxpm4 linux-libc-dev manpages manpages-dev ocl-icd-libopencl1 openssl publicsuffix rpcsvc-proto sensible-utils ucf
Suggested packages:
binutils-doc cpp-doc gcc-11-locales g++-multilib g++-11-multilib gcc-11-doc gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-11-multilib
gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev glibc-doc libgd-tools libhwloc-contrib-plugins pciutils
libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-11-doc man-browser
mpich-doc opencl-icd
The following NEW packages will be installed:
binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-11 fontconfig-config fonts-dejavu-core g++ g++-11 gcc gcc-11 gfortran gfortran-11
hwloc-nox ibverbs-providers libasan6 libatomic1 libbinutils libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0
libcurl3-gnutls libdeflate0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfontconfig1 libfreetype6 libgcc-11-dev libgd3 libgfortran-11-dev libgfortran5
libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libisl23 libitm1 libjbig0 libjpeg62-turbo libldap-2.4-2 libldap-common liblsan0 libmd0 libmpc3 libmpfr6
libmpich-dev libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl-dev libnuma1 libpciaccess0 libpmix2 libpng16-16 libpsl5 libquadmath0 librdmacm1 librtmp1
libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libstdc++-11-dev libtiff5 libtirpc-dev libtsan0 libubsan1 libucx0 libwebp6 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libxpm4 linux-libc-dev manpages manpages-dev mpich ocl-icd-libopencl1 openssl publicsuffix rpcsvc-proto
sensible-utils ucf
0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
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Get:84 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 470.94-1 [27.2 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [42.6 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.7.0-2 [21.8 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 libldap-common all 2.4.59+dfsg-1 [96.2 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 libpmix2 amd64 4.1.1~rc6-1 [575 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.14-3 [24.4 kB]
Get:91 http://deb.debian.org/debian sid/main amd64 librdmacm1 amd64 39.0-1 [69.6 kB]
Get:92 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.12.0-1 [827 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 libmpich12 amd64 4.0-1 [4917 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 mpich amd64 4.0-1 [236 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 libmpich-dev amd64 4.0-1 [6350 kB]
Get:96 http://deb.debian.org/debian sid/main amd64 libsasl2-modules amd64 2.1.27+dfsg2-3 [108 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 manpages-dev all 5.10-1 [2309 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 publicsuffix all 20211207.1025-1 [125 kB]
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Setting up libwebp6:amd64 (0.6.1-2.1) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libsasl2-2:amd64 (2.1.27+dfsg2-3) ...
Setting up libgfortran5:amd64 (11.2.0-14) ...
Setting up libubsan1:amd64 (11.2.0-14) ...
Setting up libnuma1:amd64 (2.0.14-3) ...
Setting up libmd0:amd64 (1.0.4-1) ...
Setting up libnsl-dev:amd64 (1.3.0-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ...
Setting up libcrypt-dev:amd64 (1:4.4.27-1.1) ...
Setting up libnl-3-200:amd64 (3.4.0-1+b1) ...
Setting up libssh2-1:amd64 (1.10.0-2) ...
Setting up libtiff5:amd64 (4.3.0-3) ...
Setting up libbinutils:amd64 (2.37.90.20220123-2) ...
Setting up libisl23:amd64 (0.24-2) ...
Setting up libc-dev-bin (2.33-5) ...
Setting up openssl (1.1.1m-1) ...
Setting up libbsd0:amd64 (0.11.5-1+b1) ...
Setting up publicsuffix (20211207.1025-1) ...
Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ...
Setting up libcc1-0:amd64 (11.2.0-14) ...
Setting up liblsan0:amd64 (11.2.0-14) ...
Setting up libitm1:amd64 (11.2.0-14) ...
Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ...
Setting up libtsan0:amd64 (11.2.0-14) ...
Setting up libctf0:amd64 (2.37.90.20220123-2) ...
Setting up cpp-11 (11.2.0-14) ...
Setting up manpages-dev (5.10-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3) ...
Setting up libxcb1:amd64 (1.14-3) ...
Setting up hwloc-nox (2.7.0-2) ...
Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ...
Setting up libcurl3-gnutls:amd64 (7.81.0-1) ...
Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ...
Setting up ca-certificates (20211016) ...
debconf: unable to initialize frontend: Dialog
debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/x86_64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ...
Setting up ucf (3.0043) ...
debconf: unable to initialize frontend: Dialog
debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/x86_64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up libgcc-11-dev:amd64 (11.2.0-14) ...
Setting up cpp (4:11.2.0-2) ...
Setting up libc6-dev:amd64 (2.33-5) ...
Setting up libx11-6:amd64 (2:1.7.2-2+b1) ...
Setting up binutils-x86-64-linux-gnu (2.37.90.20220123-2) ...
Setting up libibverbs1:amd64 (39.0-1) ...
Setting up libxpm4:amd64 (1:3.5.12-1) ...
Setting up ibverbs-providers:amd64 (39.0-1) ...
Setting up libgfortran-11-dev:amd64 (11.2.0-14) ...
Setting up fontconfig-config (2.13.1-4.4) ...
debconf: unable to initialize frontend: Dialog
debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/x86_64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up libxext6:amd64 (2:1.3.4-1) ...
Setting up binutils (2.37.90.20220123-2) ...
Setting up libxnvctrl0:amd64 (470.94-1) ...
Setting up libstdc++-11-dev:amd64 (11.2.0-14) ...
Setting up gcc-11 (11.2.0-14) ...
Setting up libfontconfig1:amd64 (2.13.1-4.4) ...
Setting up librdmacm1:amd64 (39.0-1) ...
Setting up libucx0:amd64 (1.12.0-1) ...
Setting up g++-11 (11.2.0-14) ...
Setting up libhwloc-plugins:amd64 (2.7.0-2) ...
Setting up gcc (4:11.2.0-2) ...
Setting up libgd3:amd64 (2.3.0-2) ...
Setting up gfortran-11 (11.2.0-14) ...
Setting up g++ (4:11.2.0-2) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up libc-devtools (2.33-5) ...
Setting up libpmix2:amd64 (4.1.1~rc6-1) ...
Setting up gfortran (4:11.2.0-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmpich12:amd64 (4.0-1) ...
Setting up mpich (4.0-1) ...
update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode
update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up libmpich-dev:amd64 (4.0-1) ...
update-alternatives: using /usr/include/x86_64-linux-gnu/mpich to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
Processing triggers for libc-bin (2.33-5) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
root at 23bd1ec5a8ce:/# cat<<EOF > ex.c
> #include <mpi.h>
> int main(int argc, char* argv[])
{
MPI_Init(&argc, &argv);
> MPI_Finalize();
return 0;
}
> EOF
root at 23bd1ec5a8ce:/# cat ex.c
#include <mpi.h>
int main(int argc, char* argv[])
{
MPI_Init(&argc, &argv);
MPI_Finalize();
return 0;
}
root at 23bd1ec5a8ce:/# mpicc.mpich -o ex ec.c
cc1: fatal error: ec.c: No such file or directory
compilation terminated.
root at 23bd1ec5a8ce:/# mpicc.mpich -o ex ex.c
root at 23bd1ec5a8ce:/# mpiexec.mpich -n 1 ex
[proxy:0:0 at 23bd1ec5a8ce] HYDU_create_process (utils/launch/launch.c:73): execvp error on file ex (No such file or directory)
root at 23bd1ec5a8ce:/# ls
bin boot dev etc ex ex.c home lib lib64 media mnt opt proc root run sbin srv sys tmp usr var
root at 23bd1ec5a8ce:/# mpiexec.mpich -n 1 ./ex
Abort(874106383): Fatal error in internal_Init: Other MPI error, error stack:
internal_Init(59)....: MPI_Init(argc=0x7ffc82ed999c, argv=0x7ffc82ed9990) failed
MPII_Init_thread(209):
MPID_Init(359).......:
MPIR_pmi_init(151)...: PMIX_Init returned -25
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