Bug#1007823: scotch breaks opm-grid autopkgtest: Failed to build dune-autopkgtest
Paul Gevers
elbrus at debian.org
Thu Mar 17 12:28:17 GMT 2022
Source: scotch, opm-grid
Control: found -1 scotch/7.0.1-2
Control: found -1 opm-grid/2021.10-2
Severity: serious
Tags: sid bookworm
User: debian-ci at lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of scotch the autopkgtest of opm-grid fails in
testing when that autopkgtest is run with the binary packages of scotch
from unstable. It passes when run with only packages from testing. In
tabular form:
pass fail
scotch from testing 7.0.1-2
opm-grid from testing 2021.10-2
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of scotch to testing
[1]. Due to the nature of this issue, I filed this bug report against
both packages. Can you please investigate the situation and reassign the
bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=scotch
https://ci.debian.net/data/autopkgtest/testing/amd64/o/opm-grid/20035246/log.gz
== Dune project/module generator ==
duneproject will assist you in the creation of a new Dune application.
During this process a new directory with the name of your project will be
created. This directory will hold all configuration and Makefiles and a
simple example application.
2) Which modules should this module depend on?
The following modules have been found:
dune-common dune-geometry dune-uggrid dune-grid dune-istl opm-common
opm-grid
creating Project "dune-autopkgtest", version 0.0.1 which depends on
"opm-grid"
with maintainer "DUNE autopkgtest <invalid at invalid>"
A sample code dune-autopkgtest.cc is generated in the "dune-autopkgtest"
directory.
Look at the README and dune.module files there.
Now you can run the dunecontrol script which will setup the new module.
Sometimes you may have to tweak CMakeLists.txt a bit.
------------------------------------------
writing initial files:
- dune-autopkgtest/README
- dune-autopkgtest/CMakeLists.txt
- dune-autopkgtest/dune-autopkgtest.pc.in
Please remember to update your dune-autopkgtest/dune-autopkgtest.pc.in,
Description and URL are missing right now.
- dune-autopkgtest/config.h.cmake
- dune-autopkgtest/src/CMakeLists.txt
- dune-autopkgtest/src/dune-autopkgtest.cc
- dune-autopkgtest/dune/autopkgtest
- dune-autopkgtest/dune/CMakeLists.txt
- dune-autopkgtest/dune/autopkgtest/CMakeLists.txt
- dune-autopkgtest/dune/autopkgtest/autopkgtest.hh
- dune-autopkgtest/doc/CMakeLists.txt
- dune-autopkgtest/doc/doxygen/Doxylocal
Doxygen is not installed! Your documentation will not work without it.
- dune-autopkgtest/doc/doxygen/CMakeLists.txt
- dune-autopkgtest/cmake/modules/CMakeLists.txt
- dune-autopkgtest/cmake/modules/DuneAutopkgtestMacros.cmake
done.
------------------------------------------
For further details read the Dune build system documentation at
https://www.dune-project.org/buildsystem/
----- using default flags $CONFIGURE_FLAGS from environment -----
--- going to build dune-autopkgtest ---
--- calling all for dune-autopkgtest ---
--- calling vcsetup for dune-autopkgtest ---
--- calling cmake for dune-autopkgtest ---
cmake "-Ddune-common_DIR=/usr" "-Ddune-geometry_DIR=/usr"
"-Ddune-uggrid_DIR=/usr" "-Ddune-grid_DIR=/usr" "-Dopm-common_DIR=/usr"
"-Ddune-istl_DIR=/usr/lib//cmake/dune-istl" "-Dopm-grid_DIR=/usr"
"/tmp/autopkgtest-lxc._4o3y13e/downtmp/autopkgtest_tmp/dune-autopkgtest"
-- The CXX compiler identification is GNU 11.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The C compiler identification is GNU 11.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Dependencies for dune-autopkgtest: opm-grid
-- Performing Test HAVE_C99
-- Performing Test HAVE_C99 - Success
-- Found C99: -std=c99 -- Found MPI_C:
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") --
Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
(found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found
dune-geometry: /usr/include -- Version 2.8.0 of dune-geometry from
/usr/lib/x86_64-linux-gnu/cmake/dune-geometry
-- Found dune-uggrid: /usr/include -- Version 2.8.0 of dune-uggrid from
/usr/lib/x86_64-linux-gnu/cmake/dune-uggrid
-- Found dune-grid:
/usr/include;/usr/lib/x86_64-linux-gnu/openmpi/include;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-- Version 2.8.0 of dune-grid from
/usr/lib/x86_64-linux-gnu/cmake/dune-grid
-- Found METIS: /usr/lib/x86_64-linux-gnu/libmetis.so -- Looking for
parmetis.h
-- Looking for parmetis.h - found
-- Found ParMETIS: /usr/include/parmetis -- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE -- Looking for dgemm_
-- Looking for dgemm_ - found
-- Found BLAS:
/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libf77blas.so;/usr/lib/x86_64-linux-gnu/libatlas.so
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK:
/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/libf77blas.so;/usr/lib/x86_64-linux-gnu/libatlas.so
-- Performing Test HAVE_UMFPACK_WITHOUT_CHOLMOD
-- Performing Test HAVE_UMFPACK_WITHOUT_CHOLMOD - Success
CMake Warning (dev) at
/usr/share/opm/cmake/Modules/FindSuiteSparse.cmake:264 (set):
implicitly converting 'INT' to 'STRING' type.
Call Stack (most recent call first):
/usr/share/opm/cmake/Modules/OpmFind.cmake:144 (find_package)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:189
(find_and_append_package_to)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:87 (find_package_deps)
/usr/share/opm/cmake/Modules/Finddune-istl.cmake:14 (find_opm_package)
/usr/share/opm/cmake/Modules/OpmFind.cmake:144 (find_package)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:189
(find_and_append_package_to)
/usr/share/opm/cmake/Modules/opm-grid-prereqs.cmake:32
(find_package_deps)
/usr/lib/x86_64-linux-gnu/cmake/opm-grid/opm-grid-config.cmake:118
(include)
/usr/share/dune/cmake/modules/DuneMacros.cmake:203 (find_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:451 (find_dune_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:494
(dune_process_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:518
(dune_create_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:666
(dune_create_dependency_tree)
CMakeLists.txt:19 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Creating target SuitSparse::umfpack
-- Found SuiteSparse:
/usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libamd.so
-- Found dune-istl:
/usr/include;/usr/include/parmetis;/usr/include/suitesparse -- Version
2.8.0 of dune-istl from /usr/lib//cmake/dune-istl
-- Found Boost:
/usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found
suitable version "1.74.0", minimum required is "1.44.0") found
components: system unit_test_framework -- Performing Test HAVE_CJSON
-- Performing Test HAVE_CJSON - Success
CMake Warning (dev) at
/usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:438
(message):
The package name passed to `find_package_handle_standard_args`
(CJSON) does
not match the name of the calling package (cjson). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
/usr/share/opm/cmake/Modules/Findcjson.cmake:77
(find_package_handle_standard_args)
/usr/share/opm/cmake/Modules/OpmFind.cmake:144 (find_package)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:189
(find_and_append_package_to)
/usr/share/opm/cmake/Modules/opm-common-prereqs.cmake:25
(find_package_deps)
/usr/lib/x86_64-linux-gnu/cmake/opm-common/opm-common-config.cmake:127
(include)
/usr/share/opm/cmake/Modules/OpmFind.cmake:147 (find_package)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:189
(find_and_append_package_to)
/usr/share/opm/cmake/Modules/opm-grid-prereqs.cmake:32
(find_package_deps)
/usr/lib/x86_64-linux-gnu/cmake/opm-grid/opm-grid-config.cmake:118
(include)
/usr/share/dune/cmake/modules/DuneMacros.cmake:203 (find_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:451 (find_dune_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:494
(dune_process_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:518
(dune_create_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:666
(dune_create_dependency_tree)
CMakeLists.txt:19 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found CJSON: /usr/include/cjson CMake Warning (dev) at
/usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:438
(message):
The package name passed to `find_package_handle_standard_args`
(opm-common)
does not match the name of the calling package (opm-grid). This can lead
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
/usr/share/opm/cmake/Modules/OpmFind.cmake:156
(find_package_handle_standard_args)
/usr/share/opm/cmake/Modules/OpmPackage.cmake:189
(find_and_append_package_to)
/usr/share/opm/cmake/Modules/opm-grid-prereqs.cmake:32
(find_package_deps)
/usr/lib/x86_64-linux-gnu/cmake/opm-grid/opm-grid-config.cmake:118
(include)
/usr/share/dune/cmake/modules/DuneMacros.cmake:203 (find_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:451 (find_dune_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:494
(dune_process_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:518
(dune_create_dependency_leafs)
/usr/share/dune/cmake/modules/DuneMacros.cmake:666
(dune_create_dependency_tree)
CMakeLists.txt:19 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found opm-common: /usr/lib/x86_64-linux-gnu/libopmcommon.so -- Found
PTScotch: /usr/include/scotch -- Found ZOLTAN:
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so -- Dependencies for
opm-grid: dune-common (>= 2.6);dune-geometry (>= 2.6);dune-grid (>=
2.6);opm-common
-- Suggestions for opm-grid: dune-istl (>= 2.6)
-- Dependencies for dune-geometry: dune-common (>= 2.8)
-- Dependencies for dune-grid: dune-geometry (>= 2.8)
-- Suggestions for dune-grid: dune-uggrid (>=2.8)
-- Dependencies for opm-common: dune-common
-- Dependencies for dune-istl: dune-common (>= 2.8)
-- Dependencies for dune-geometry: dune-common (>= 2.8)
-- Dependencies for dune-uggrid: dune-common (>= 2.8)
-- Performing Test cxx_std_flag_17
-- Performing Test cxx_std_flag_17 - Success
-- Performing Test compiler_supports_cxx17
-- Performing Test compiler_supports_cxx17 - Success
-- Looking for std::experimental::make_array<int,int>
-- Looking for std::experimental::make_array<int,int> - found
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>>
-- Looking for
std::move<std::experimental::detected_t<std::decay_t,int>> - found
-- Looking for std::identity
-- Looking for std::identity - not found
-- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find
LatexMk (missing: LATEXMK_EXECUTABLE) -- Could NOT find Sphinx (missing:
SPHINX_EXECUTABLE) -- Could NOT find Doxygen (missing:
DOXYGEN_EXECUTABLE) -- Found PkgConfig: /usr/bin/pkg-config (found
version "0.29.2") -- Searching for macro file 'DuneCommonMacros' for
module 'dune-common'.
-- Performing tests specific to dune-common from file
/usr/share/dune/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- Looking for dsyev_
-- Looking for dsyev_ - found
-- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR
GMP_INCLUDE_DIR GMP_LIB) -- Performing Test QuadMath_COMPILES
-- Performing Test QuadMath_COMPILES - Success
-- Found QuadMath: (Supported by compiler) -- Found MPI_C:
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version
"3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable
version "3.1", minimum required is "3.0") found components: C -- Could
NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set
PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing:
PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "")
-- Found PTScotch: /usr/lib/x86_64-linux-gnu/libscotch.so (found version
"7.0.1") -- Looking for METIS_PartGraphVKway
CMake Error: The following variables are used in this project, but they
are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the
CMake files:
METIS_LIBRARY
linked by target "cmTC_0698a" in directory
/tmp/autopkgtest-lxc._4o3y13e/downtmp/autopkgtest_tmp/dune-autopkgtest/build-cmake/CMakeFiles/CMakeTmp
CMake Error at /usr/share/cmake-3.22/Modules/CheckSymbolExists.cmake:148
(try_compile):
Failed to generate test project build system.
Call Stack (most recent call first):
/usr/share/cmake-3.22/Modules/CheckSymbolExists.cmake:71
(__CHECK_SYMBOL_EXISTS_IMPL)
/usr/share/dune/cmake/modules/FindMETIS.cmake:131 (check_symbol_exists)
/usr/share/dune/cmake/modules/DuneCommonMacros.cmake:35 (find_package)
/usr/share/dune/cmake/modules/DuneMacros.cmake:609 (include)
/usr/share/dune/cmake/modules/DuneMacros.cmake:699
(dune_process_dependency_macros)
CMakeLists.txt:19 (dune_project)
-- Configuring incomplete, errors occurred!
See also
"/tmp/autopkgtest-lxc._4o3y13e/downtmp/autopkgtest_tmp/dune-autopkgtest/build-cmake/CMakeFiles/CMakeOutput.log".
See also
"/tmp/autopkgtest-lxc._4o3y13e/downtmp/autopkgtest_tmp/dune-autopkgtest/build-cmake/CMakeFiles/CMakeError.log".
--- Failed to build dune-autopkgtest ---
Terminating dunecontrol due to previous errors!
E: Building the package failed.
autopkgtest [09:16:52]: test basic
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