Bug#1010202: libmatio: FTBFS against hdf5 1.12.0 currently in experimental - 3 failed tests

[Gilles Filippini]

Hi,

Gilles Filippini a écrit le 29/04/2022 à 14:10 :
> Hi Sébastien,
> 
> Sébastien Villemot a écrit le 29/04/2022 à 11:45 :
>> Hi Gilles,
>>
>> Le mardi 26 avril 2022 à 10:38 +0200, Gilles Filippini a écrit :
>>> Source: libmatio
>>> Version: 1.5.23-1
>>> Severity: important
>>> Tags: ftbfs
>>>
>>> While rebuilding libmatio 1.5.23 against hdf5 1.12.0, 3 testcases 
>>> failed with:
>> […]
>>
>> I had an exchange with upstream, who says that libmatio 1.5.23 should
>> pass all tests against hdf5 1.12.2.
>>
>> Is there any reason why you’re sticking to hdf5 1.12.0 instead of the
>> latest stable release 1.12.2?
> 
> No, no reason. I wanted to transition 1.12.0 before switching to 1.12.2, 
> but the other way should be fine as well. I'll give it a try.

I've just tested a rebuild against HDF5 1.12.2, and the same 3 tests 
fail mosly the same way:

2272. mat73_compressed_read_le.at:475: testing Read directory ...
./mat73_compressed_read_le.at:478: cp $srcdir/results/dir_le.out expout
          $builddir/test_mat directory 
$srcdir/datasets/matio_test_cases_compressed_hdf_le.mat
--- /dev/null   2022-04-25 15:38:39.000000000 +0000
+++ /<<PKGBUILDDIR>>/test/testsuite.dir/at-groups/2272/stderr 
2022-05-02 08:55:13.515220334 +0000
@@ -0,0 +1,40 @@
+-E- test_mat: HDF5 error #000 in H5Fopen()
+      file : ../../../src/H5F.c:620
+      major: File accessibility
+      minor: Unable to open file
+-E- test_mat: HDF5 error #001 in H5VL_file_open()
+      file : ../../../src/H5VLcallback.c:3501
+      major: Virtual Object Layer
+      minor: Iteration failed
+-E- test_mat: HDF5 error #002 in H5PL__path_table_iterate()
+      file : ../../../src/H5PLpath.c:578
+      major: Plugin for dynamically loaded library
+      minor: Iteration failed
+-E- test_mat: HDF5 error #003 in H5PL__path_table_iterate_process_path()
+      file : ../../../src/H5PLpath.c:620
+      major: Plugin for dynamically loaded library
+      minor: Can't open directory or file
+-E- test_mat: HDF5 error #004 in H5VL__file_open()
+      file : ../../../src/H5VLcallback.c:3351
+      major: Virtual Object Layer
+      minor: Can't open object
+-E- test_mat: HDF5 error #005 in H5VL__native_file_open()
+      file : ../../../src/H5VLnative_file.c:97
+      major: File accessibility
+      minor: Unable to open file
+-E- test_mat: HDF5 error #006 in H5F_open()
+      file : ../../../src/H5Fint.c:1898
+      major: File accessibility
+      minor: Unable to lock file
+-E- test_mat: HDF5 error #007 in H5FD_lock()
+      file : ../../../src/H5FD.c:1625
+      major: Virtual File Layer
+      minor: Unable to lock file
+-E- test_mat: HDF5 error #008 in H5FD__sec2_lock()
+      file : ../../../src/H5FDsec2.c:1002
+      major: Virtual File Layer
+      minor: Unable to lock file
+-E- test_mat: HDF5 error #000 in H5Fclose()
+      file : ../../../src/H5F.c:707
+      major: Invalid arguments to routine
+      minor: Inappropriate type

Best,

_g.