Bug#1019533: scipy breaks libflame autopkgtest on i386: Floating point exception
Paul Gevers
elbrus at debian.org
Sun Sep 11 11:19:14 BST 2022
Source: scipy, libflame
Control: found -1 scipy/1.8.1-9
Control: found -1 libflame/5.2.0-3
Severity: serious
Tags: sid bookworm
User: debian-ci at lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of scipy (1.8.1-9, 1.8.1-7 passed) the autopkgtest
of libflame fails in testing when that autopkgtest is run with the
binary packages of scipy from unstable. It passes when run with only
packages from testing. In tabular form:
pass fail
scipy from testing 1.8.1-9 and later
libflame from testing 5.2.0-3
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is *not* blocking the migration of scipy to
testing [1] (because of bug #1019525). Due to the nature of this issue,
I filed this bug report against both packages. Can you please
investigate the situation and reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=scipy
https://ci.debian.net/data/autopkgtest/testing/i386/libf/libflame/25855917/log.gz
(Please be aware of:
WARNING: log file truncated at 20 MB (before compression)
First 1MB is presented above, last 19 MB below
)
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_0 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_1 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_1 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_2 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_3 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_round_trip <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_0point5 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_nan <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_basic <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_oneminusoneovern <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
Fatal Python error: Floating point exception
Current thread 0xf7ba5700 (most recent call first):
File "/usr/lib/python3/dist-packages/scipy/special/_testutils.py",
line 213 in eval_func_at_params
File "/usr/lib/python3/dist-packages/scipy/special/_testutils.py",
line 227 in check
File
"/usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py",
line 213 in test_oneminusoneovern
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 192 in
pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1761 in
runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 166 in
pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 259 in
<lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 338 in
from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 258 in
call_runtest_hook
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 219 in
call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 130 in
runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 111 in
pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in
pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 322 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 268 in
wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 315 in
pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 164 in main
File "/usr/lib/python3/dist-packages/scipy/_lib/_testutils.py", line
69 in __call__
File "<string>", line 1 in <module>
Extension modules: numpy.core._multiarray_umath,
numpy.core._multiarray_tests, numpy.linalg.lapack_lite,
numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal,
numpy.random._common, numpy.random.bit_generator,
numpy.random._bounded_integers, numpy.random._mt19937,
numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64,
numpy.random._sfc64, numpy.random._generator, scipy._lib._ccallback_c,
scipy._lib._fpumode, scipy._lib._test_ccallback,
scipy.sparse._sparsetools, scipy.sparse._csparsetools,
scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path,
scipy.sparse.csgraph._traversal,
scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow,
scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering,
scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull,
scipy.spatial._voronoi, scipy.linalg._fblas, scipy.linalg._flapack,
scipy.linalg._cythonized_array_utils, scipy.linalg._flinalg,
scipy.linalg._solve_toeplitz, scipy.linalg._matfuncs_sqrtm_triu,
scipy.linalg.cython_blas, scipy.linalg.cython_lapack,
scipy.linalg._decomp_update, scipy.spatial._distance_wrap,
scipy.spatial._hausdorff, scipy.special._ufuncs_cxx,
scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb,
scipy.special._ellip_harm_2, scipy.spatial.transform._rotation,
scipy.cluster._vq, scipy.cluster._hierarchy,
scipy.cluster._optimal_leaf_ordering, scipy._lib._uarray._uarray,
scipy.fftpack.convolve, scipy.sparse.linalg._isolve._iterative,
scipy.sparse.linalg._dsolve._superlu,
scipy.sparse.linalg._eigen.arpack._arpack, scipy.optimize._minpack2,
scipy.optimize._group_columns, scipy.optimize._trlib._trlib,
scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC,
scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack,
scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros,
scipy.optimize.__nnls, scipy.optimize._highs.cython.src._highs_wrapper,
scipy.optimize._highs._highs_wrapper,
scipy.optimize._highs.cython.src._highs_constants,
scipy.optimize._highs._highs_constants, scipy.linalg._interpolative,
scipy.optimize._bglu_dense, scipy.optimize._lsap_module,
scipy.integrate._odepack, scipy.integrate._quadpack,
scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda,
scipy.integrate._test_odeint_banded, scipy.interpolate._fitpack,
scipy.interpolate.dfitpack, scipy.interpolate._bspl,
scipy.interpolate._ppoly, scipy.interpolate.interpnd,
scipy.interpolate._rbfinterp_pythran, scipy.ndimage._nd_image,
_ni_label, scipy.ndimage._ni_label, scipy.special.cython_special,
scipy.stats._stats, beta_ufunc, scipy.stats._boost.beta_ufunc,
binom_ufunc, scipy.stats._boost.binom_ufunc, nbinom_ufunc,
scipy.stats._boost.nbinom_ufunc, hypergeom_ufunc,
scipy.stats._boost.hypergeom_ufunc, scipy.stats._biasedurn,
scipy.stats._hypotests_pythran, scipy.stats._statlib, scipy.stats._mvn,
scipy.stats._sobol, scipy.stats._qmc_cy,
scipy.stats._unuran.unuran_wrapper, scipy.io.matlab._mio_utils,
scipy.io.matlab._streams, scipy.io.matlab._mio5_utils,
scipy.io._test_fortran, scipy.ndimage._ctest, _cytest,
scipy.ndimage._cytest, scipy.odr.__odrpack,
scipy.optimize.cython_optimize._zeros, scipy.signal._sigtools,
scipy.signal._max_len_seq_inner, scipy.signal._upfirdn_apply,
scipy.signal._spline, scipy.signal._sosfilt, scipy.signal._spectral,
scipy.signal._peak_finding_utils,
scipy.sparse.linalg._propack._spropack,
scipy.sparse.linalg._propack._dpropack,
scipy.sparse.linalg._propack._cpropack,
scipy.sparse.linalg._propack._zpropack, scipy.special._test_round,
scipy._lib._test_deprecation_def, scipy._lib._test_deprecation_call
(total: 129)
bash: line 1: 3834 Floating point exceptionbash -ec 'python3 -c "import
scipy as sp; sp.test('\''full'\'', verbose=3)"' 2> >(tee -a
/tmp/autopkgtest-lxc.v3379ep8/downtmp/scipy-with-libflame-stderr 1>&2) >
>(tee -a /tmp/autopkgtest-lxc.v3379ep8/downtmp/scipy-with-libflame-stdout)
autopkgtest [05:57:29]: test scipy-with-libflame: -----------------------]
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