Bug#1043933: ann: Fails to build source after successful build

Lucas Nussbaum lucas at debian.org
Sun Aug 13 14:17:53 BST 2023 

Source: ann
Version: 1.1.2+doc-9
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package ann
> dpkg-buildpackage: info: source version 1.1.2+doc-9
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel <picca at debian.org>
>  dpkg-source --before-build .
>  fakeroot debian/rules clean
> dh clean
>    dh_auto_clean
> 	make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> Making distclean in src
> make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
> test -z "libann.la" || rm -f libann.la
> rm -rf .libs _libs
> rm -f *.o
> rm -f *.lo
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./so_locations
> rm -f ./.deps/ANN.Plo
> rm -f ./.deps/bd_fix_rad_search.Plo
> rm -f ./.deps/bd_pr_search.Plo
> rm -f ./.deps/bd_search.Plo
> rm -f ./.deps/bd_tree.Plo
> rm -f ./.deps/brute.Plo
> rm -f ./.deps/kd_dump.Plo
> rm -f ./.deps/kd_fix_rad_search.Plo
> rm -f ./.deps/kd_pr_search.Plo
> rm -f ./.deps/kd_search.Plo
> rm -f ./.deps/kd_split.Plo
> rm -f ./.deps/kd_tree.Plo
> rm -f ./.deps/kd_util.Plo
> rm -f ./.deps/perf.Plo
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
> Making distclean in include
> make[2]: Entering directory '/<<PKGBUILDDIR>>/include'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/include'
> Making distclean in ann2fig
> make[2]: Entering directory '/<<PKGBUILDDIR>>/ann2fig'
> rm -rf .libs _libs
> rm -f *.o
>  rm -f ann2fig
> rm -f *.lo
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/ann2fig.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/ann2fig'
> Making distclean in sample
> make[2]: Entering directory '/<<PKGBUILDDIR>>/sample'
> rm -rf .libs _libs
> rm -f *.o
> rm -f *.lo
>  rm -f ann_sample
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/ann_sample.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/sample'
> Making distclean in test
> make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
> rm -rf .libs _libs
>  rm -f ann_test
> rm -f *.o
> rm -f *.lo
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/ann_test.Po
> rm -f ./.deps/rand.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
> Making distclean in ann-cctbx
> make[2]: Entering directory '/<<PKGBUILDDIR>>/ann-cctbx'
> test -z "libann-cctbx.la" || rm -f libann-cctbx.la
> rm -rf .libs _libs
> rm -f *.o
> rm -f *.lo
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> rm -rf self_exclude/.libs self_exclude/_libs
> rm -f self_exclude/*.o
> test . = "." || test -z "" || rm -f 
> rm -rf self_include/.libs self_include/_libs
> rm -f self_exclude/.deps/.dirstamp
> rm -f ./so_locations
> rm -f self_exclude/*.lo
> rm -f self_exclude/.dirstamp
> rm -f self_include/*.o
> rm -f self_include/.deps/.dirstamp
> rm -f self_include/*.lo
> rm -f self_include/.dirstamp
> rm -f self_exclude/.deps/ANN.Plo
> rm -f self_exclude/.deps/bd_fix_rad_search.Plo
> rm -f self_exclude/.deps/bd_pr_search.Plo
> rm -f self_exclude/.deps/bd_search.Plo
> rm -f self_exclude/.deps/bd_tree.Plo
> rm -f self_exclude/.deps/brute.Plo
> rm -f self_exclude/.deps/kd_dump.Plo
> rm -f self_exclude/.deps/kd_fix_rad_search.Plo
> rm -f self_exclude/.deps/kd_pr_search.Plo
> rm -f self_exclude/.deps/kd_search.Plo
> rm -f self_exclude/.deps/kd_split.Plo
> rm -f self_exclude/.deps/kd_tree.Plo
> rm -f self_exclude/.deps/kd_util.Plo
> rm -f self_exclude/.deps/perf.Plo
> rm -f self_include/.deps/ANN.Plo
> rm -f self_include/.deps/bd_fix_rad_search.Plo
> rm -f self_include/.deps/bd_pr_search.Plo
> rm -f self_include/.deps/bd_search.Plo
> rm -f self_include/.deps/bd_tree.Plo
> rm -f self_include/.deps/brute.Plo
> rm -f self_include/.deps/kd_dump.Plo
> rm -f self_include/.deps/kd_fix_rad_search.Plo
> rm -f self_include/.deps/kd_pr_search.Plo
> rm -f self_include/.deps/kd_search.Plo
> rm -f self_include/.deps/kd_split.Plo
> rm -f self_include/.deps/kd_tree.Plo
> rm -f self_include/.deps/kd_util.Plo
> rm -f self_include/.deps/perf.Plo
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/ann-cctbx'
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f 
> rm -f config.h stamp-h1
> rm -f libtool config.lt
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f cscope.out cscope.in.out cscope.po.out cscope.files
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -f config.status config.cache config.log configure.lineno config.status.lineno
> rm -f Makefile
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_autoreconf_clean
>    debian/rules override_dh_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Restore upstream Makefiles
> for f in Makefile src/Makefile ann2fig/Makefile sample/Makefile test/Makefile ; do 				\
> 	if [ -f $f-orig ] ; then mv $f-orig $f ; fi	\
> done
> dh_clean
> rm ann-cctbx
> rm: cannot remove 'ann-cctbx': Is a directory
> make[1]: [debian/rules:29: override_dh_clean] Error 1 (ignored)
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building ann using existing ./ann_1.1.2+doc.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: info: local changes detected, the modified files are:
>  ann-1.1.2+doc/ann-cctbx/Makefile.am
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_EXCLUDE/ANN.h
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_EXCLUDE/ANNperf.h
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_EXCLUDE/ANNx.h
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_INCLUDE/ANN.h
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_INCLUDE/ANNperf.h
>  ann-1.1.2+doc/ann-cctbx/include/ANNSELF_INCLUDE/ANNx.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/ANN.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/bd_fix_rad_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/bd_pr_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/bd_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/bd_tree.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/bd_tree.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/brute.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_dump.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_fix_rad_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_fix_rad_search.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_pr_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_pr_search.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_search.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_split.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_split.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_tree.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_tree.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_util.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/kd_util.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/perf.cpp
>  ann-1.1.2+doc/ann-cctbx/self_exclude/pr_queue.h
>  ann-1.1.2+doc/ann-cctbx/self_exclude/pr_queue_k.h
>  ann-1.1.2+doc/ann-cctbx/self_include/ANN.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/bd_fix_rad_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/bd_pr_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/bd_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/bd_tree.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/bd_tree.h
>  ann-1.1.2+doc/ann-cctbx/self_include/brute.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_dump.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_fix_rad_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_fix_rad_search.h
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_pr_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_pr_search.h
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_search.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_search.h
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_split.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_split.h
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_tree.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_tree.h
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_util.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/kd_util.h
>  ann-1.1.2+doc/ann-cctbx/self_include/perf.cpp
>  ann-1.1.2+doc/ann-cctbx/self_include/pr_queue.h
>  ann-1.1.2+doc/ann-cctbx/self_include/pr_queue_k.h
> dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/ann_1.1.2+doc-9.diff.agPi9Q
> dpkg-source: info: Hint: make sure the version in debian/changelog matches the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/ann_1.1.2+doc-9_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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