Bug#1045093: h5z-zfp: Fails to build source after successful build

[Lucas Nussbaum]

Source: h5z-zfp
Version: 1.1.0+git20221021-4
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ---------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package h5z-zfp
> dpkg-buildpackage: info: source version 1.1.0+git20221021-4
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Enrico Zini <enrico at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --buildsystem=makefile --without autoreconf
>    debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> make FC=x86_64-linux-gnu-gfortran CC=x86_64-linux-gnu-gcc PREFIX=/usr ZFP_HOME=/usr HDF5_HOME=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial,/usr/bin clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> grep: /H5Zzfp_plugin.h: No such file or directory
> rm -f H5Z-ZFP-.tar.gz
> cd src; make ZFP_HOME=/usr  PREFIX=/usr clean
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
> rm -rf plugin
> rm -f libh5zzfp.a *.o *.[mM][oO][dD]
> rm -f *.gcno *.gcda *.gcov
> rm -f H5Zzfp_props_f.mod
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
> cd test; make ZFP_HOME=/usr  PREFIX=/usr clean
> make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
> rm -f test_write_plugin.o test_write_lib.o test_read_plugin.o test_read_lib.o test_rw_fortran.o test_error.o
> rm -f test_write_plugin test_write_lib test_read_plugin test_read_lib test_rw_fortran test_error
> rm -f test_zfp.h5 test_zfp_fortran.h5 mesh_repack.h5 test_zfp_errors.h5
> rm -f print_h5repack_farg.o print_h5repack_farg check-failed
> rm -f *.gcno *.gcda *.gcov
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_clean -O--buildsystem=makefile
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building h5z-zfp using existing ./h5z-zfp_1.1.0+git20221021.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to docs/_build/doctrees/cmake.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/cmake.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/direct.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/direct.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/endian_issues.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/endian_issues.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/environment.pickle: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/environment.pickle in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/h5repack.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/h5repack.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/hdf5_chunking.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/hdf5_chunking.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/index.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/index.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/installation.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/installation.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/interfaces.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/interfaces.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/doctrees/tests.doctree: binary file contents changed
> dpkg-source: error: add docs/_build/doctrees/tests.doctree in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/_static/basic.css has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/_static/classic.css has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/_static/documentation_options.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to docs/_build/html/_static/file.png: binary file contents changed
> dpkg-source: error: add docs/_build/html/_static/file.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/html/_static/minus.png: binary file contents changed
> dpkg-source: error: add docs/_build/html/_static/minus.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/_build/html/_static/plus.png: binary file contents changed
> dpkg-source: error: add docs/_build/html/_static/plus.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/_static/pygments.css has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/_static/sidebar.js has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/cmake.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/direct.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/endian_issues.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/genindex.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/h5repack.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/hdf5_chunking.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/index.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/installation.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/interfaces.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/objects.inv has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/search.html has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/searchindex.js has no final newline (either original or modified version)
> dpkg-source: warning: file h5z-zfp-1.1.0+git20221021/docs/_build/html/tests.html has no final newline (either original or modified version)
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/h5z-zfp_1.1.0+git20221021-4_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.