Bug#1037807: opm-common: ftbfs with GCC-13

Wed Jun 14 10:29:38 BST 2023

Package: src:opm-common
Version: 2022.10+ds-7
Severity: normal
Tags: sid trixie
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-13

[This bug is targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.

The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/opm-common_2022.10+ds-7_unstable_gccexp.log
The last lines of the build log are at the end of this report.

To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html

[...]
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/AquiferCT.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/AquiferCT.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/AquiferCT.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Aquifer/AquiferCT.cpp
[ 47%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/Aquifetp.cpp.o
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[ 48%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/Aquancon.cpp.o
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[ 48%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/AquiferHelpers.cpp.o
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[ 48%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/NumericalAquifer/NumericalAquiferCell.cpp.o
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[ 48%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/NumericalAquifer/NumericalAquiferConnection.cpp.o
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[ 48%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/NumericalAquifer/SingleNumericalAquifer.cpp.o
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[ 49%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Aquifer/NumericalAquifer/NumericalAquifers.cpp.o
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[ 49%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/checkDeck.cpp.o
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/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/FaultCollection.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/FaultCollection.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/FaultCollection.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/FaultCollection.cpp
[ 51%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/Fault.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/Fault.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/Fault.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/Fault.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/Fault.cpp
[ 51%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/FaultFace.cpp.o
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[ 51%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp
[ 51%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MapAxes.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MapAxes.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MapAxes.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MapAxes.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/MapAxes.cpp
[ 52%] Building CXX object CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MULTREGTScanner.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DEMBEDDED_PYTHON -DFMT_SHARED -DHAVE_CONFIG_H=1 -Dopmcommon_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -I/<<PKGBUILDDIR>> -I/usr/include/cjson -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -pthread -fPIC -fopenmp -std=c++17 -MD -MT CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MULTREGTScanner.cpp.o -MF CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MULTREGTScanner.cpp.o.d -o CMakeFiles/opmcommon.dir/src/opm/input/eclipse/EclipseState/Grid/MULTREGTScanner.cpp.o -c /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/MULTREGTScanner.cpp
In file included from /<<PKGBUILDDIR>>/opm/io/eclipse/EGrid.hpp:22,
                 from /<<PKGBUILDDIR>>/src/opm/input/eclipse/EclipseState/Grid/GridDims.cpp:22:
/<<PKGBUILDDIR>>/opm/io/eclipse/EclFile.hpp:92:17: error: ‘uint64_t’ was not declared in this scope
   92 |     std::vector<uint64_t> ifStreamPos;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/opm/io/eclipse/EclFile.hpp:31:1: note: ‘uint64_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   30 | #include <vector>
  +++ |+#include <cstdint>
   31 | 
/<<PKGBUILDDIR>>/opm/io/eclipse/EclFile.hpp:92:25: error: template argument 1 is invalid
   92 |     std::vector<uint64_t> ifStreamPos;
      |                         ^
/<<PKGBUILDDIR>>/opm/io/eclipse/EclFile.hpp:92:25: error: template argument 2 is invalid
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dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:17: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2