Bug#1032442: unblock: petsc/3.18.5+dfsg1-1 petsc4py/3.18.5-1
Drew Parsons
dparsons at debian.org
Mon Mar 6 20:19:48 GMT 2023
Package: release.debian.org
Severity: normal
User: release.debian.org at packages.debian.org
Usertags: unblock
X-Debbugs-Cc: petsc at packages.debian.org
Control: affects -1 + src:petsc src:petsc4py
Please unblock packages petsc and petsc4py
[ Reason ]
petsc 3.18.5 has just been released. It is just a conventional bug
fix release that I think would be appropriate to include in bookworm.
[ Impact ]
Bug fixes and associated stability improvements won't enter bookworm
if the unblock is not permitted
[ Tests ]
debci tests for both petsac and petsc4py are passing.
[ Risks ]
5th bug fix release, no major changes. Risk is minimal.
Many changes are trivial updates to doc files, which obscures scrutiny
of the debdiffs. I am managing this risk by adding debdiffs with
--exclude=doc
[ Checklist ]
[ ] all changes are documented in the d/changelog
[x ] I reviewed all changes and I approve them
[x ] attach debdiff against the package in testing
[ Other info ]
This covers petsc4py as well as petsc. Upstream they are managed in
the same source code repo. Actually there no substantive source
changes in petsc4py, but it would look strange to have petsc 3.18.5
with petsc4py left at 3.18.4.
unblock petsc/3.18.5+dfsg1-1
unblock petsc4py/3.18.5-1
-------------- next part --------------
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/config/BuildSystem/config/framework.py petsc-3.18.5+dfsg1/config/BuildSystem/config/framework.py
--- petsc-3.18.4+dfsg1/config/BuildSystem/config/framework.py 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/config/BuildSystem/config/framework.py 2023-02-27 23:11:05.000000000 +0100
@@ -524,6 +524,8 @@
#Intel
lines = [s for s in lines if s.find(": command line warning #10121: overriding") < 0]
lines = [s for s in lines if s.find(': remark #10441:') < 0]
+ #Intel icpx
+ lines = [s for s in lines if s.find("warning: Note that use of '-g' without any optimization-level option will turn off most compiler optimizations similar to use") < 0]
# PGI: Ignore warning about temporary license
lines = [s for s in lines if s.find('license.dat') < 0]
# Cray XT3
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/config/BuildSystem/config/packages/pARMS.py petsc-3.18.5+dfsg1/config/BuildSystem/config/packages/pARMS.py
--- petsc-3.18.4+dfsg1/config/BuildSystem/config/packages/pARMS.py 2022-06-29 08:00:07.000000000 +0200
+++ petsc-3.18.5+dfsg1/config/BuildSystem/config/packages/pARMS.py 2023-02-27 23:11:05.000000000 +0100
@@ -4,12 +4,12 @@
def __init__(self, framework):
config.package.Package.__init__(self, framework)
self.gitcommit = 'v3.2p5'
- self.download = ['git://https://bitbucket.org/petsc/pkg-parms.git','https://bitbucket.org/petsc/pkg-metis/get/'+self.gitcommit+'.tar.gz']
+ self.download = ['git://https://bitbucket.org/petsc/pkg-parms.git','https://bitbucket.org/petsc/pkg-parms/get/'+self.gitcommit+'.tar.gz']
self.downloaddirnames = ['petsc-pkg-parms','pARMS']
self.functions = ['parms_PCCreate']
self.includes = ['parms.h']
self.liblist = [['libparms.a']]
- #self.license = 'http://www-users.cs.umn.edu/~saad/software/pARMS'
+ #self.license = 'https://www-users.cs.umn.edu/~saad/software/pARMS'
self.precisions = ['double']
return
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/config/configure.py petsc-3.18.5+dfsg1/config/configure.py
--- petsc-3.18.4+dfsg1/config/configure.py 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/config/configure.py 2023-02-27 23:11:05.000000000 +0100
@@ -2,8 +2,9 @@
from __future__ import print_function
import os, sys
-extraLogs = []
-petsc_arch = ''
+banner_length = 93
+extraLogs = []
+petsc_arch = ''
# Use en_US as language so that BuildSystem parses compiler messages in english
def fixLang(lang):
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/config/examples/arch-ci-linux-hip-double.py petsc-3.18.5+dfsg1/config/examples/arch-ci-linux-hip-double.py
--- petsc-3.18.4+dfsg1/config/examples/arch-ci-linux-hip-double.py 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/config/examples/arch-ci-linux-hip-double.py 2023-02-27 23:11:05.000000000 +0100
@@ -3,34 +3,19 @@
import os
petsc_hash_pkgs=os.path.join(os.getenv('HOME'),'petsc-hash-pkgs')
-import platform
-if platform.node() == 'instinct':
- opts = [
- '--with-mpi-dir=/home/users/balay/soft/mpich-4.0',
- '--with-blaslapack-dir=/home/users/balay/soft/fblaslapack',
- '--with-make-np=24',
- '--with-make-test-np=8',
- '--with-hipc=/opt/rocm-5.1.0/bin/hipcc',
- '--with-hip-dir=/opt/rocm-5.1.0',
- ]
-else:
- opts = [
- 'LDFLAGS=-L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7/lib -lquadmath',
- '--with-mpi-dir=/scratch/soft/mpich',
- '--download-fblaslapack',
- '--download-hypre',
- '--with-hipc=/opt/rocm/bin/hipcc',
- '--with-hip-dir=/opt/rocm',
- ]
-
if __name__ == '__main__':
import sys
import os
sys.path.insert(0, os.path.abspath('config'))
import configure
- configure_options = opts + [
+ configure_options = [
'--package-prefix-hash='+petsc_hash_pkgs,
- '--download-cmake',
+ '--with-mpi-dir=/home/users/balay/soft/instinct/gcc-10.2.0/mpich-4.1',
+ '--with-blaslapack-dir=/home/users/balay/soft/instinct/gcc-10.2.0/fblaslapack',
+ '--with-make-np=24',
+ '--with-make-test-np=8',
+ '--with-hipc=/opt/rocm-5.4.3/bin/hipcc',
+ '--with-hip-dir=/opt/rocm-5.4.3',
'COPTFLAGS=-g -O',
'FOPTFLAGS=-g -O',
'CXXOPTFLAGS=-g -O',
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/CTAGS petsc-3.18.5+dfsg1/CTAGS
--- petsc-3.18.4+dfsg1/CTAGS 2023-01-31 07:04:23.000000000 +0100
+++ petsc-3.18.5+dfsg1/CTAGS 2023-02-27 23:31:42.000000000 +0100
@@ -1,14 +1,127 @@
+!_TAG_EXTRA_DESCRIPTION anonymous /Include tags for non-named objects like lambda/
+!_TAG_EXTRA_DESCRIPTION fileScope /Include tags of file scope/
+!_TAG_EXTRA_DESCRIPTION pseudo /Include pseudo tags/
+!_TAG_EXTRA_DESCRIPTION subparser /Include tags generated by subparsers/
+!_TAG_FIELD_DESCRIPTION epoch /the last modified time of the input file (only for F\/file kind tag)/
+!_TAG_FIELD_DESCRIPTION file /File-restricted scoping/
+!_TAG_FIELD_DESCRIPTION input /input file/
+!_TAG_FIELD_DESCRIPTION language /Language of input file containing tag/
+!_TAG_FIELD_DESCRIPTION name /tag name/
+!_TAG_FIELD_DESCRIPTION pattern /pattern/
+!_TAG_FIELD_DESCRIPTION typeref /Type and name of a variable or typedef/
+!_TAG_FIELD_DESCRIPTION!C++ name /aliased names/
+!_TAG_FIELD_DESCRIPTION!Python nameref /the original name for the tag/
!_TAG_FILE_FORMAT 2 /extended format; --format=1 will not append ;" to lines/
!_TAG_FILE_SORTED 1 /0=unsorted, 1=sorted, 2=foldcase/
+!_TAG_KIND_DESCRIPTION!C d,macro /macro definitions/
+!_TAG_KIND_DESCRIPTION!C e,enumerator /enumerators (values inside an enumeration)/
+!_TAG_KIND_DESCRIPTION!C f,function /function definitions/
+!_TAG_KIND_DESCRIPTION!C g,enum /enumeration names/
+!_TAG_KIND_DESCRIPTION!C h,header /included header files/
+!_TAG_KIND_DESCRIPTION!C m,member /struct, and union members/
+!_TAG_KIND_DESCRIPTION!C s,struct /structure names/
+!_TAG_KIND_DESCRIPTION!C t,typedef /typedefs/
+!_TAG_KIND_DESCRIPTION!C u,union /union names/
+!_TAG_KIND_DESCRIPTION!C v,variable /variable definitions/
+!_TAG_KIND_DESCRIPTION!C++ c,class /classes/
+!_TAG_KIND_DESCRIPTION!C++ d,macro /macro definitions/
+!_TAG_KIND_DESCRIPTION!C++ e,enumerator /enumerators (values inside an enumeration)/
+!_TAG_KIND_DESCRIPTION!C++ f,function /function definitions/
+!_TAG_KIND_DESCRIPTION!C++ g,enum /enumeration names/
+!_TAG_KIND_DESCRIPTION!C++ h,header /included header files/
+!_TAG_KIND_DESCRIPTION!C++ m,member /class, struct, and union members/
+!_TAG_KIND_DESCRIPTION!C++ n,namespace /namespaces/
+!_TAG_KIND_DESCRIPTION!C++ s,struct /structure names/
+!_TAG_KIND_DESCRIPTION!C++ t,typedef /typedefs/
+!_TAG_KIND_DESCRIPTION!C++ u,union /union names/
+!_TAG_KIND_DESCRIPTION!C++ v,variable /variable definitions/
+!_TAG_KIND_DESCRIPTION!Fortran E,enum /enumerations/
+!_TAG_KIND_DESCRIPTION!Fortran M,method /type bound procedures/
+!_TAG_KIND_DESCRIPTION!Fortran N,enumerator /enumeration values/
+!_TAG_KIND_DESCRIPTION!Fortran S,submodule /submodules/
+!_TAG_KIND_DESCRIPTION!Fortran b,blockData /block data/
+!_TAG_KIND_DESCRIPTION!Fortran c,common /common blocks/
+!_TAG_KIND_DESCRIPTION!Fortran e,entry /entry points/
+!_TAG_KIND_DESCRIPTION!Fortran f,function /functions/
+!_TAG_KIND_DESCRIPTION!Fortran i,interface /interface contents, generic names, and operators/
+!_TAG_KIND_DESCRIPTION!Fortran k,component /type and structure components/
+!_TAG_KIND_DESCRIPTION!Fortran l,label /labels/
+!_TAG_KIND_DESCRIPTION!Fortran m,module /modules/
+!_TAG_KIND_DESCRIPTION!Fortran n,namelist /namelists/
+!_TAG_KIND_DESCRIPTION!Fortran p,program /programs/
+!_TAG_KIND_DESCRIPTION!Fortran s,subroutine /subroutines/
+!_TAG_KIND_DESCRIPTION!Fortran t,type /derived types and structures/
+!_TAG_KIND_DESCRIPTION!Fortran v,variable /program (global) and module variables/
+!_TAG_KIND_DESCRIPTION!HTML C,stylesheet /stylesheets/
+!_TAG_KIND_DESCRIPTION!HTML I,id /identifiers/
+!_TAG_KIND_DESCRIPTION!HTML J,script /scripts/
+!_TAG_KIND_DESCRIPTION!HTML a,anchor /named anchors/
+!_TAG_KIND_DESCRIPTION!HTML c,class /classes/
+!_TAG_KIND_DESCRIPTION!HTML h,heading1 /H1 headings/
+!_TAG_KIND_DESCRIPTION!HTML i,heading2 /H2 headings/
+!_TAG_KIND_DESCRIPTION!HTML j,heading3 /H3 headings/
+!_TAG_KIND_DESCRIPTION!HTML t,title /titles/
+!_TAG_KIND_DESCRIPTION!Make I,makefile /makefiles/
+!_TAG_KIND_DESCRIPTION!Make m,macro /macros/
+!_TAG_KIND_DESCRIPTION!Make t,target /targets/
+!_TAG_KIND_DESCRIPTION!Python I,namespace /name referring a module defined in other file/
+!_TAG_KIND_DESCRIPTION!Python Y,unknown /name referring a class\/variable\/function\/module defined in other module/
+!_TAG_KIND_DESCRIPTION!Python c,class /classes/
+!_TAG_KIND_DESCRIPTION!Python f,function /functions/
+!_TAG_KIND_DESCRIPTION!Python i,module /modules/
+!_TAG_KIND_DESCRIPTION!Python m,member /class members/
+!_TAG_KIND_DESCRIPTION!Python v,variable /variables/
+!_TAG_KIND_DESCRIPTION!Tex B,bibitem /bibliography items/
+!_TAG_KIND_DESCRIPTION!Tex C,command /command created with \\newcommand/
+!_TAG_KIND_DESCRIPTION!Tex G,subparagraph /subparagraphs/
+!_TAG_KIND_DESCRIPTION!Tex N,counter /counter created with \\newcounter/
+!_TAG_KIND_DESCRIPTION!Tex P,paragraph /paragraphs/
+!_TAG_KIND_DESCRIPTION!Tex b,subsubsection /subsubsections/
+!_TAG_KIND_DESCRIPTION!Tex c,chapter /chapters/
+!_TAG_KIND_DESCRIPTION!Tex e,environment /environment created with \\newenvironment/
+!_TAG_KIND_DESCRIPTION!Tex i,xinput /external input files/
+!_TAG_KIND_DESCRIPTION!Tex l,label /labels/
+!_TAG_KIND_DESCRIPTION!Tex o,operator /math operator created with \\DeclareMathOperator/
+!_TAG_KIND_DESCRIPTION!Tex p,part /parts/
+!_TAG_KIND_DESCRIPTION!Tex s,section /sections/
+!_TAG_KIND_DESCRIPTION!Tex t,theorem /theorem created with \\newtheorem/
+!_TAG_KIND_DESCRIPTION!Tex u,subsection /subsections/
!_TAG_OUTPUT_EXCMD mixed /number, pattern, mixed, or combineV2/
!_TAG_OUTPUT_FILESEP slash /slash or backslash/
!_TAG_OUTPUT_MODE u-ctags /u-ctags or e-ctags/
+!_TAG_OUTPUT_VERSION 0.0 /current.age/
+!_TAG_PARSER_VERSION!C 0.0 /current.age/
+!_TAG_PARSER_VERSION!C++ 0.0 /current.age/
+!_TAG_PARSER_VERSION!Fortran 0.0 /current.age/
+!_TAG_PARSER_VERSION!HTML 0.0 /current.age/
+!_TAG_PARSER_VERSION!Make 0.0 /current.age/
+!_TAG_PARSER_VERSION!Python 0.0 /current.age/
+!_TAG_PARSER_VERSION!Tex 0.0 /current.age/
!_TAG_PATTERN_LENGTH_LIMIT 96 /0 for no limit/
-!_TAG_PROC_CWD /tmp/petsc-dist-tmp.balay.764631/petsc-3.18.4/ //
+!_TAG_PROC_CWD /tmp/petsc-dist-tmp.balay.756230/petsc-3.18.5/ //
!_TAG_PROGRAM_AUTHOR Universal Ctags Team //
!_TAG_PROGRAM_NAME Universal Ctags /Derived from Exuberant Ctags/
!_TAG_PROGRAM_URL https://ctags.io/ /official site/
-!_TAG_PROGRAM_VERSION 5.9.0 //
+!_TAG_PROGRAM_VERSION 6.0.0 //
+!_TAG_ROLE_DESCRIPTION!C!header local /local header/
+!_TAG_ROLE_DESCRIPTION!C!header system /system header/
+!_TAG_ROLE_DESCRIPTION!C!macro undef /undefined/
+!_TAG_ROLE_DESCRIPTION!C++!header local /local header/
+!_TAG_ROLE_DESCRIPTION!C++!header system /system header/
+!_TAG_ROLE_DESCRIPTION!C++!macro undef /undefined/
+!_TAG_ROLE_DESCRIPTION!HTML!class attribute /assigned as attributes/
+!_TAG_ROLE_DESCRIPTION!HTML!script extFile /referenced as external files/
+!_TAG_ROLE_DESCRIPTION!HTML!stylesheet extFile /referenced as external files/
+!_TAG_ROLE_DESCRIPTION!Make!makefile included /included/
+!_TAG_ROLE_DESCRIPTION!Make!makefile optional /optionally included/
+!_TAG_ROLE_DESCRIPTION!Python!module imported /imported modules/
+!_TAG_ROLE_DESCRIPTION!Python!module indirectlyImported /module imported in alternative name/
+!_TAG_ROLE_DESCRIPTION!Python!module namespace /namespace from where classes\/variables\/functions are imported/
+!_TAG_ROLE_DESCRIPTION!Python!unknown imported /imported from the other module/
+!_TAG_ROLE_DESCRIPTION!Python!unknown indirectlyImported /classes\/variables\/functions\/modules imported in alternative name/
+!_TAG_ROLE_DESCRIPTION!Tex!xinput bibliography /bibliography (.bib) file/
+!_TAG_ROLE_DESCRIPTION!Tex!xinput included /external input file specified with \\include/
+!_TAG_ROLE_DESCRIPTION!Tex!xinput input /external input file specified with \\input/
$(scripts) src/binding/petsc4py/demo/petsc-examples/ksp/makefile /^$(scripts):$/;" t language:Make
${EXECUTABLE}.exe src/binding/petsc4py/demo/perftest/makefile /^${EXECUTABLE}.exe:$/;" t language:Make
${EXECUTABLE}.exe src/binding/petsc4py/demo/poisson3d/makefile /^${EXECUTABLE}.exe:$/;" t language:Make
@@ -615,9 +728,9 @@
ASSEMBLE_LOWER_TRIANGULAR src/ksp/ksp/tutorials/ex42.c /^#define ASSEMBLE_LOWER_TRIANGULAR$/;" d language:C file:
ASS_MAP_wIwDI_uJuDJ src/ksp/ksp/tutorials/ex42.c /^static PetscInt ASS_MAP_wIwDI_uJuDJ(PetscInt wi, PetscInt wd, PetscInt w_NPE, PetscInt w_dof, Pe/;" f language:C typeref:typename:PetscInt file:
ASS_MAP_wIwDI_uJuDJ src/ksp/ksp/tutorials/ex43.c /^static PetscInt ASS_MAP_wIwDI_uJuDJ(PetscInt wi, PetscInt wd, PetscInt w_NPE, PetscInt w_dof, Pe/;" f language:C typeref:typename:PetscInt file:
-AS_DIGIT src/sys/yaml/src/yaml_private.h /^#define AS_DIGIT(/;" d language:C++
+AS_DIGIT src/sys/yaml/src/yaml_private.h /^#define AS_DIGIT(string) AS_DIGIT_/;" d language:C++
AS_DIGIT_AT src/sys/yaml/src/yaml_private.h /^#define AS_DIGIT_AT(/;" d language:C++
-AS_HEX src/sys/yaml/src/yaml_private.h /^#define AS_HEX(/;" d language:C++
+AS_HEX src/sys/yaml/src/yaml_private.h /^#define AS_HEX(string) AS_HEX_/;" d language:C++
AS_HEX_AT src/sys/yaml/src/yaml_private.h /^#define AS_HEX_AT(/;" d language:C++
ASum src/ts/impls/rosw/rosw.c /^ PetscReal *ASum; \/* Row sum of A *\/$/;" m language:C struct:_RosWTableau typeref:typename:PetscReal * file:
AT include/petsc/private/kspimpl.h /^ Mat AT, BT;$/;" m language:C++ struct:_p_KSP::__anon45e825a60208 typeref:typename:Mat
@@ -1073,33 +1186,33 @@
B src/ts/tutorials/ex25.c /^ PetscReal A, B; \/* Reaction coefficients *\/$/;" m language:C struct:_User typeref:typename:PetscReal file:
B src/ts/tutorials/ex35.cxx /^ PetscReal A, B; \/* Reaction coefficients *\/$/;" m language:C++ struct:pUserCtx typeref:typename:PetscReal file:
BACK src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK"><\/a><span class="summary-name">BACK<\/span> = <code title="5">5<\/code>$/;" a language:HTML
-BACK src/dm/impls/stag/tests/ex30.c /^#define BACK /;" d language:C file:
-BACK src/dm/impls/stag/tutorials/ex3.c /^#define BACK /;" d language:C file:
+BACK src/dm/impls/stag/tests/ex30.c /^#define BACK DMSTAG_BACK$/;" d language:C file:
+BACK src/dm/impls/stag/tutorials/ex3.c /^#define BACK DMSTAG_BACK$/;" d language:C file:
BACKWARD_SWEEP src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.SORType-class.html /^ <a name="BACKWARD_SWEEP"><\/a><span class="summary-name">BACKWARD_SWEEP<\/span> = <code /;" a language:HTML
BACK_DOWN src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_DOWN"><\/a><span class="summary-name">BACK_DOWN<\/span> = <code title="2">/;" a language:HTML
-BACK_DOWN src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN /;" d language:C file:
-BACK_DOWN src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN /;" d language:C file:
+BACK_DOWN src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN DMSTAG_BACK_DOWN$/;" d language:C file:
+BACK_DOWN src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN DMSTAG_BACK_DOWN$/;" d language:C file:
BACK_DOWN_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_DOWN_LEFT"><\/a><span class="summary-name">BACK_DOWN_LEFT<\/span> = <code /;" a language:HTML
-BACK_DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN_LEFT /;" d language:C file:
-BACK_DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN_LEFT /;" d language:C file:
+BACK_DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN_LEFT DMSTAG_BACK_DOWN_LEFT$/;" d language:C file:
+BACK_DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN_LEFT DMSTAG_BACK_DOWN_LEFT$/;" d language:C file:
BACK_DOWN_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_DOWN_RIGHT"><\/a><span class="summary-name">BACK_DOWN_RIGHT<\/span> = <cod/;" a language:HTML
-BACK_DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN_RIGHT /;" d language:C file:
-BACK_DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN_RIGHT /;" d language:C file:
+BACK_DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_DOWN_RIGHT DMSTAG_BACK_DOWN_RIGHT$/;" d language:C file:
+BACK_DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_DOWN_RIGHT DMSTAG_BACK_DOWN_RIGHT$/;" d language:C file:
BACK_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_LEFT"><\/a><span class="summary-name">BACK_LEFT<\/span> = <code title="4">/;" a language:HTML
-BACK_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_LEFT /;" d language:C file:
-BACK_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_LEFT /;" d language:C file:
+BACK_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_LEFT DMSTAG_BACK_LEFT$/;" d language:C file:
+BACK_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_LEFT DMSTAG_BACK_LEFT$/;" d language:C file:
BACK_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_RIGHT"><\/a><span class="summary-name">BACK_RIGHT<\/span> = <code title="6/;" a language:HTML
-BACK_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_RIGHT /;" d language:C file:
-BACK_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_RIGHT /;" d language:C file:
+BACK_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_RIGHT DMSTAG_BACK_RIGHT$/;" d language:C file:
+BACK_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_RIGHT DMSTAG_BACK_RIGHT$/;" d language:C file:
BACK_UP src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_UP"><\/a><span class="summary-name">BACK_UP<\/span> = <code title="8">8<\//;" a language:HTML
-BACK_UP src/dm/impls/stag/tests/ex30.c /^#define BACK_UP /;" d language:C file:
-BACK_UP src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP /;" d language:C file:
+BACK_UP src/dm/impls/stag/tests/ex30.c /^#define BACK_UP DMSTAG_BACK_UP$/;" d language:C file:
+BACK_UP src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP DMSTAG_BACK_UP$/;" d language:C file:
BACK_UP_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_UP_LEFT"><\/a><span class="summary-name">BACK_UP_LEFT<\/span> = <code titl/;" a language:HTML
-BACK_UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_UP_LEFT /;" d language:C file:
-BACK_UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP_LEFT /;" d language:C file:
+BACK_UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define BACK_UP_LEFT DMSTAG_BACK_UP_LEFT$/;" d language:C file:
+BACK_UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP_LEFT DMSTAG_BACK_UP_LEFT$/;" d language:C file:
BACK_UP_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="BACK_UP_RIGHT"><\/a><span class="summary-name">BACK_UP_RIGHT<\/span> = <code ti/;" a language:HTML
-BACK_UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_UP_RIGHT /;" d language:C file:
-BACK_UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP_RIGHT /;" d language:C file:
+BACK_UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define BACK_UP_RIGHT DMSTAG_BACK_UP_RIGHT$/;" d language:C file:
+BACK_UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define BACK_UP_RIGHT DMSTAG_BACK_UP_RIGHT$/;" d language:C file:
BAIJ src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Type-class.html /^ <a name="BAIJ"><\/a><span class="summary-name">BAIJ<\/span> = <code title="'baij'"><code/;" a language:HTML
BAIJMKL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Type-class.html /^ <a name="BAIJMKL"><\/a><span class="summary-name">BAIJMKL<\/span> = <code title="'baijmk/;" a language:HTML
BALANCED src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.HPDDMCoarseCorrectionType-class.html /^ <a name="BALANCED"><\/a><span class="summary-name">BALANCED<\/span> = <code title="2">2</;" a language:HTML
@@ -1134,7 +1247,7 @@
BCApply_WEST src/ksp/ksp/tutorials/ex49.c /^static PetscErrorCode BCApply_WEST(DM da, PetscInt d_idx, PetscScalar bc_val, Mat A, Vec b)$/;" f language:C typeref:typename:PetscErrorCode file:
BCGS src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="BCGS"><\/a><span class="summary-name">BCGS<\/span> = <code title="'bcgs'"><code/;" a language:HTML
BCGSL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="BCGSL"><\/a><span class="summary-name">BCGSL<\/span> = <code title="'bcgsl'"><c/;" a language:HTML
-BCHECK src/ksp/ksp/tutorials/ex35.cxx /^#define BCHECK(/;" d language:C++ file:
+BCHECK src/ksp/ksp/tutorials/ex35.cxx /^#define BCHECK(coordxyz, truetrace) ((coordxyz < truetrace + BCHECKEPS && coordxyz > truetrace -/;" d language:C++ file:
BCHECKEPS src/ksp/ksp/tutorials/ex35.cxx /^#define BCHECKEPS /;" d language:C++ file:
BCType src/ksp/ksp/tutorials/ex29.c /^} BCType;$/;" t language:C typeref:enum:__anond0fdfe450103 file:
BCType src/ksp/ksp/tutorials/ex32.c /^} BCType;$/;" t language:C typeref:enum:__anond0fe6cdf0103 file:
@@ -1617,11 +1730,11 @@
CASTDOUBLECOMPLEX src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define CASTDOUBLECOMPLEX /;" d language:C file:
CASTDOUBLECOMPLEXSTAR src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define CASTDOUBLECOMPLEXSTAR /;" d language:C file:
CC src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define CC(/;" d language:C++
-CC src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define CC(/;" d language:C++
+CC src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define CC(a) (fgmres->cc_origin + (a)) \/* CC /;" d language:C++
CC src/ksp/ksp/impls/gmres/gmresimpl.h /^ #define CC(/;" d language:C++
-CC src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define CC(/;" d language:C++
-CC src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define CC(/;" d language:C++
-CC src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define CC(/;" d language:C++
+CC src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define CC(a) (lgmres->cc_origin + (a)) \/* CC /;" d language:C++
+CC src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define CC(a) (pgmres->cc_origin + (a)) \/* CC /;" d language:C++
+CC src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define CC(a) (pipefgmres->cc_origin + (a)) \/* CC /;" d language:C++
CCmplx src/dm/tests/ex36.c /^typedef struct _n_CCmplx CCmplx;$/;" t language:C typeref:struct:_n_CCmplx file:
CCmplxAdd src/dm/tests/ex36.c /^CCmplx CCmplxAdd(CCmplx a, CCmplx c)$/;" f language:C typeref:typename:CCmplx
CCmplxExp src/dm/tests/ex36.c /^CCmplx CCmplxExp(CCmplx a)$/;" f language:C typeref:typename:CCmplx
@@ -1756,7 +1869,7 @@
CHARACTERISTIC_Solve include/petsc/private/characteristicimpl.h /^PETSC_EXTERN PetscLogEvent CHARACTERISTIC_Solve;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogEvent
CHARACTERISTIC_Solve src/ts/characteristic/interface/characteristic.c /^PetscLogEvent CHARACTERISTIC_SetUp, CHARACTERISTIC_Solve, CHARACTERISTIC_QueueSetup, CHARACTERIS/;" v language:C typeref:typename:PetscLogEvent
CHEBYSHEV src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="CHEBYSHEV"><\/a><span class="summary-name">CHEBYSHEV<\/span> = <code title="'ch/;" a language:HTML
-CHECK src/sys/yaml/src/yaml_private.h /^#define CHECK(/;" d language:C++
+CHECK src/sys/yaml/src/yaml_private.h /^#define CHECK(string,octet) (CHECK_/;" d language:C++
CHECK_AT src/sys/yaml/src/yaml_private.h /^#define CHECK_AT(/;" d language:C++
CHKERRA include/petsc/finclude/petscsys.h /^#define CHKERRA(/;" d language:C++
CHKERRABORT include/petscerror.h /^#define CHKERRABORT(/;" d language:C++
@@ -2030,9 +2143,10 @@
CXXFLAGS src/ksp/ksp/impls/hpddm/makefile /^CXXFLAGS = ${HPDDM_INCLUDE}$/;" m language:Make
CXXFLAGS src/ksp/ksp/tutorials/amrex/makefile /^CXXFLAGS = ${AMREX_INCLUDE}$/;" m language:Make
CXXFLAGS src/ksp/pc/impls/hpddm/makefile /^CXXFLAGS = ${HPDDM_INCLUDE}$/;" m language:Make
+CYTHON src/binding/petsc4py/setup.py /^ CYTHON = '0.24'$/;" v language:Python
CYTHON src/binding/petsc4py/setup.py /^ CYTHON = '0.29.32'$/;" v language:Python
CYTHON_PEP489_MULTI_PHASE_INIT src/binding/petsc4py/src/libpetsc4py/custom.h /^#define CYTHON_PEP489_MULTI_PHASE_INIT /;" d language:C++
-CYTHON_VERSION src/binding/petsc4py/setup.py /^ from Cython.Compiler.Version import version as CYTHON_VERSION$/;" x language:Python function:chk_cython file: nameref:unknown:version
+CYTHON_VERSION src/binding/petsc4py/setup.py /^ from Cython.Compiler.Version import version as CYTHON_VERSION$/;" Y language:Python function:chk_cython file: nameref:unknown:version
C_0 src/ts/utils/dmplexlandau/plexland.c /^ #define C_0(/;" d language:C file:
C_LINE src/ksp/pc/impls/tfs/tfs.h /^#define C_LINE /;" d language:C++
C_P src/ts/tutorials/ex76.c /^const PetscInt C_P = 7;$/;" v language:C typeref:typename:const PetscInt
@@ -2183,7 +2297,7 @@
Chwirut src/binding/petsc4py/demo/taosolve/chwirut.py /^class Chwirut(object):$/;" c language:Python
Ci src/tao/constrained/impls/almm/almm.h /^ Vec Px, LgradX, Ce, Ci, G; \/* aliased vectors (do not destroy!) *\/$/;" m language:C++ struct:__anonb0a5055f0108 typeref:typename:Vec
CircleInflate src/ts/utils/dmplexlandau/plexland.c /^static void CircleInflate(PetscReal r1, PetscReal r2, PetscReal r0, PetscInt num_sections, Petsc/;" f language:C typeref:typename:void file:
-Citations — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/citing.html /^ <title>Citations — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Citations — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/citing.html /^ <title>Citations — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
Citations? src/binding/petsc4py/docs/usrman/citing.html /^<h1>Citations<a class="headerlink" href="#citations" title="Permalink to this heading">?<\/a><\//;" h language:HTML
Ciwork src/tao/constrained/impls/almm/almm.h /^ Vec Psub, Xwork, Cework, Ciwork, Cizero; \/* work vectors *\/$/;" m language:C++ struct:__anonb0a5055f0108 typeref:typename:Vec
Cizero src/tao/constrained/impls/almm/almm.h /^ Vec Psub, Xwork, Cework, Ciwork, Cizero; \/* work vectors *\/$/;" m language:C++ struct:__anonb0a5055f0108 typeref:typename:Vec
@@ -2929,7 +3043,7 @@
CreateTensorProduct_3D src/dm/impls/plex/tests/ex4.c /^PetscErrorCode CreateTensorProduct_3D(MPI_Comm comm, PetscInt testNum, DM *dm)$/;" f language:C typeref:typename:PetscErrorCode
CreateTestMesh src/dm/impls/plex/tests/ex10.c /^PetscErrorCode CreateTestMesh(MPI_Comm comm, DM *dm, AppCtx *options)$/;" f language:C typeref:typename:PetscErrorCode
CreateVolumeSubmesh src/dm/impls/plex/tests/ex16.c /^static PetscErrorCode CreateVolumeSubmesh(DM dm, PetscBool domain, PetscBool lower, PetscReal he/;" f language:C typeref:typename:PetscErrorCode file:
-Create_CompRowLoc_Matrix_dist src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Create_CompRowLoc_Matrix_dist /;" d language:C file:
+Create_CompRowLoc_Matrix_dist src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Create_CompRowLoc_Matrix_dist zCreate_CompRowLoc_Matrix_dist$/;" d language:C file:
CryerFunction src/ts/tutorials/ex53.c /^static PetscReal CryerFunction(PetscReal nu_u, PetscReal nu, PetscReal x)$/;" f language:C typeref:typename:PetscReal file:
CsrMatrix src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h /^struct CsrMatrix {$/;" s language:C++
CsrMatrix src/mat/impls/aij/seq/seqhipsparse/hipsparsematimpl.h /^struct CsrMatrix {$/;" s language:C++
@@ -3102,9 +3216,9 @@
DGMRES src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="DGMRES"><\/a><span class="summary-name">DGMRES<\/span> = <code title="'dgmres'"/;" a language:HTML
DGMRES_DEFAULT_EIG src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define DGMRES_DEFAULT_EIG /;" d language:C++
DGMRES_DEFAULT_MAXEIG src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define DGMRES_DEFAULT_MAXEIG /;" d language:C++
-DGifCloseFile src/sys/classes/draw/utils/image.c /^ #define DGifCloseFile(/;" d language:C file:
+DGifCloseFile src/sys/classes/draw/utils/image.c /^ #define DGifCloseFile(f, err) DGifCloseFile(/;" d language:C file:
DGifOpenFileHandle src/sys/classes/draw/utils/image.c /^ #define DGifOpenFileHandle(/;" d language:C file:
-DGifOpenFileName src/sys/classes/draw/utils/image.c /^ #define DGifOpenFileName(/;" d language:C file:
+DGifOpenFileName src/sys/classes/draw/utils/image.c /^ #define DGifOpenFileName(n, err) DGifOpenFileName(/;" d language:C file:
DI include/petsc/private/taoimpl.h /^ Vec DI;$/;" m language:C++ struct:_p_Tao typeref:typename:Vec
DIAG src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.SchurFactType-class.html /^ <a name="DIAG"><\/a><span class="summary-name">DIAG<\/span> = <code title="0">0<\/code>$/;" a language:HTML
DIAG_S src/ksp/ksp/tutorials/ex54.c /^#define DIAG_S /;" d language:C file:
@@ -3715,7 +3829,7 @@
DIVERGED_TR_REDUCTION src/binding/petsc4py/docs/apiref/petsc4py.PETSc.TAO.Reason-class.html /^ <a name="DIVERGED_TR_REDUCTION"><\/a><span class="summary-name">DIVERGED_TR_REDUCTION<\//;" a language:HTML
DIVERGED_USER src/binding/petsc4py/docs/apiref/petsc4py.PETSc.TAO.Reason-class.html /^ <a name="DIVERGED_USER"><\/a><span class="summary-name">DIVERGED_USER<\/span> = <code ti/;" a language:HTML
DL src/tao/pde_constrained/impls/lcl/lcl.h /^ Vec DL; \/* Multipliers step *\/$/;" m language:C++ struct:__anon5215f93f0108 typeref:typename:Vec
-DM include/petsc/finclude/petscdm.h /^#define DM /;" d language:C++
+DM include/petsc/finclude/petscdm.h /^#define DM type(tDM)/;" d language:C++
DM include/petscdmtypes.h /^typedef struct _p_DM *DM;$/;" t language:C++ typeref:struct:_p_DM *
DMAdaptFlag include/petsc/finclude/petscdm.h /^#define DMAdaptFlag /;" d language:C++
DMAdaptFlag include/petscdmtypes.h /^} DMAdaptFlag;$/;" t language:C++ typeref:enum:__anonb2ee9b130603
@@ -4701,7 +4815,7 @@
DMLABEL_CLASSID src/dm/interface/dm.c /^PetscClassId DMLABEL_CLASSID;$/;" v language:C typeref:typename:PetscClassId
DMLABEL_LOOKUP_THRESHOLD src/dm/label/dmlabel.c /^ #define DMLABEL_LOOKUP_THRESHOLD /;" d language:C file:
DMLOCATEPOINT_POINT_NOT_FOUND include/petscdm.h /^#define DMLOCATEPOINT_POINT_NOT_FOUND /;" d language:C++
-DMLabel include/petsc/finclude/petscdmlabel.h /^#define DMLabel /;" d language:C++
+DMLabel include/petsc/finclude/petscdmlabel.h /^#define DMLabel type(tDMLabel)/;" d language:C++
DMLabel include/petscdmlabel.h /^typedef struct _p_DMLabel *DMLabel;$/;" t language:C++ typeref:struct:_p_DMLabel *
DMLabelAddStrata src/dm/label/dmlabel.c /^PetscErrorCode DMLabelAddStrata(DMLabel label, PetscInt numStrata, const PetscInt stratumValues[/;" f language:C typeref:typename:PetscErrorCode
DMLabelAddStrataIS src/dm/label/dmlabel.c /^PetscErrorCode DMLabelAddStrataIS(DMLabel label, IS valueIS)$/;" f language:C typeref:typename:PetscErrorCode
@@ -5847,7 +5961,7 @@
DMPlexTransferVecTree src/dm/impls/plex/plextree.c /^PetscErrorCode DMPlexTransferVecTree(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscSF sfRefine,/;" f language:C typeref:typename:PetscErrorCode
DMPlexTransferVecTree_Inject src/dm/impls/plex/plextree.c /^static PetscErrorCode DMPlexTransferVecTree_Inject(DM fine, Vec vecFine, DM coarse, Vec vecCoars/;" f language:C typeref:typename:PetscErrorCode file:
DMPlexTransferVecTree_Interpolate src/dm/impls/plex/plextree.c /^static PetscErrorCode DMPlexTransferVecTree_Interpolate(DM coarse, Vec vecCoarseLocal, DM fine, /;" f language:C typeref:typename:PetscErrorCode file:
-DMPlexTransform include/petsc/finclude/petscdm.h /^#define DMPlexTransform /;" d language:C++
+DMPlexTransform include/petsc/finclude/petscdm.h /^#define DMPlexTransform type(tDMPlexTransform)/;" d language:C++
DMPlexTransform include/petscdmplextransformtypes.h /^typedef struct _p_DMPlexTransform *DMPlexTransform;$/;" t language:C++ typeref:struct:_p_DMPlexTransform *
DMPlexTransformAdaptLabel src/dm/impls/plex/transform/interface/plextransform.c /^PetscErrorCode DMPlexTransformAdaptLabel(DM dm, PETSC_UNUSED Vec metric, DMLabel adaptLabel, PET/;" f language:C typeref:typename:PetscErrorCode
DMPlexTransformApply src/dm/impls/plex/transform/interface/plextransform.c /^PetscErrorCode DMPlexTransformApply(DMPlexTransform tr, DM dm, DM *tdm)$/;" f language:C typeref:typename:PetscErrorCode
@@ -7041,20 +7155,20 @@
DOFS src/binding/petsc4py/test/test_dmstag.py /^ DOFS = (2,1)$/;" v language:Python class:TestDMStag_1D_W0_N21
DOFS src/binding/petsc4py/test/test_dmstag.py /^ DOFS = (2,1)$/;" v language:Python class:TestDMStag_1D_W2_N21
DOWN src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="DOWN"><\/a><span class="summary-name">DOWN<\/span> = <code title="11">11<\/code/;" a language:HTML
-DOWN src/dm/impls/stag/tests/ex18.c /^#define DOWN /;" d language:C file:
-DOWN src/dm/impls/stag/tests/ex30.c /^#define DOWN /;" d language:C file:
-DOWN src/dm/impls/stag/tutorials/ex2.c /^#define DOWN /;" d language:C file:
-DOWN src/dm/impls/stag/tutorials/ex3.c /^#define DOWN /;" d language:C file:
+DOWN src/dm/impls/stag/tests/ex18.c /^#define DOWN DMSTAG_DOWN$/;" d language:C file:
+DOWN src/dm/impls/stag/tests/ex30.c /^#define DOWN DMSTAG_DOWN$/;" d language:C file:
+DOWN src/dm/impls/stag/tutorials/ex2.c /^#define DOWN DMSTAG_DOWN$/;" d language:C file:
+DOWN src/dm/impls/stag/tutorials/ex3.c /^#define DOWN DMSTAG_DOWN$/;" d language:C file:
DOWN_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="DOWN_LEFT"><\/a><span class="summary-name">DOWN_LEFT<\/span> = <code title="10"/;" a language:HTML
-DOWN_LEFT src/dm/impls/stag/tests/ex18.c /^#define DOWN_LEFT /;" d language:C file:
-DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define DOWN_LEFT /;" d language:C file:
-DOWN_LEFT src/dm/impls/stag/tutorials/ex2.c /^#define DOWN_LEFT /;" d language:C file:
-DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define DOWN_LEFT /;" d language:C file:
+DOWN_LEFT src/dm/impls/stag/tests/ex18.c /^#define DOWN_LEFT DMSTAG_DOWN_LEFT$/;" d language:C file:
+DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define DOWN_LEFT DMSTAG_DOWN_LEFT$/;" d language:C file:
+DOWN_LEFT src/dm/impls/stag/tutorials/ex2.c /^#define DOWN_LEFT DMSTAG_DOWN_LEFT$/;" d language:C file:
+DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define DOWN_LEFT DMSTAG_DOWN_LEFT$/;" d language:C file:
DOWN_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="DOWN_RIGHT"><\/a><span class="summary-name">DOWN_RIGHT<\/span> = <code title="1/;" a language:HTML
-DOWN_RIGHT src/dm/impls/stag/tests/ex18.c /^#define DOWN_RIGHT /;" d language:C file:
-DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define DOWN_RIGHT /;" d language:C file:
-DOWN_RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define DOWN_RIGHT /;" d language:C file:
-DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define DOWN_RIGHT /;" d language:C file:
+DOWN_RIGHT src/dm/impls/stag/tests/ex18.c /^#define DOWN_RIGHT DMSTAG_DOWN_RIGHT$/;" d language:C file:
+DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define DOWN_RIGHT DMSTAG_DOWN_RIGHT$/;" d language:C file:
+DOWN_RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define DOWN_RIGHT DMSTAG_DOWN_RIGHT$/;" d language:C file:
+DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define DOWN_RIGHT DMSTAG_DOWN_RIGHT$/;" d language:C file:
DO_NOT_COPY_VALUES src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.DuplicateOption-class.html /^ <a name="DO_NOT_COPY_VALUES"><\/a><span class="summary-name">DO_NOT_COPY_VALUES<\/span> /;" a language:HTML
DPhi src/snes/impls/vi/ss/viss.c /^static inline PetscScalar DPhi(PetscScalar a, PetscScalar b)$/;" f language:C typeref:typename:PetscScalar file:
DRAW src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Viewer-class.html /^ <td><span class="summary-sig"><a name="DRAW"><\/a><span class="summary-sig-name">DRAW</;" a language:HTML
@@ -7113,8 +7227,8 @@
Data src/ts/tests/ex4.c /^} Data;$/;" t language:C typeref:struct:__anon591e59b60108 file:
DataSection include/petsc/private/dmnetworkimpl.h /^ PetscSection DataSection; \/* Section for managing parameter distribution *\/$/;" m language:C++ struct:__anonb0873e730708 typeref:typename:PetscSection
Db src/snes/impls/vi/ss/vissimpl.h /^ Vec Db; \/* B sub-differential work vector (row scaling) *\/$/;" m language:C++ struct:__anond9d3bc080108 typeref:typename:Vec
-DeAllocGlu_3d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define DeAllocGlu_3d /;" d language:C file:
-DeAllocLlu_3d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define DeAllocLlu_3d /;" d language:C file:
+DeAllocGlu_3d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define DeAllocGlu_3d zDeAllocGlu_3d$/;" d language:C file:
+DeAllocLlu_3d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define DeAllocLlu_3d zDeAllocLlu_3d$/;" d language:C file:
DeRegisterMatScaleUserImpl src/mat/tutorials/ex8.c /^PetscErrorCode DeRegisterMatScaleUserImpl(Mat mat)$/;" f language:C typeref:typename:PetscErrorCode
DebugPrintf src/sys/objects/device/tests/ex7.c /^#define DebugPrintf(/;" d language:C file:
DebugTerminal src/sys/error/adebug.c /^static char DebugTerminal[PETSC_MAX_PATH_LEN];$/;" v language:C typeref:typename:char[] file:
@@ -7166,9 +7280,9 @@
DestroyProblem src/tao/constrained/tutorials/maros.c /^PetscErrorCode DestroyProblem(AppCtx *user)$/;" f language:C typeref:typename:PetscErrorCode
DestroyQuasiInterpolator src/snes/tutorials/ex36.c /^static PetscErrorCode DestroyQuasiInterpolator(Mat P)$/;" f language:C typeref:typename:PetscErrorCode file:
DestroySFs src/vec/is/sf/tests/ex18.c /^PetscErrorCode DestroySFs(AppCtx *ctx, PetscSF *sfs[])$/;" f language:C typeref:typename:PetscErrorCode
-Destroy_A3d_gathered_on_2d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Destroy_A3d_gathered_on_2d /;" d language:C file:
+Destroy_A3d_gathered_on_2d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Destroy_A3d_gathered_on_2d zDestroy_A3d_gathered_on_2d$/;" d language:C file:
Destroy_AppContext src/ts/tutorials/ex35.cxx /^PetscErrorCode Destroy_AppContext(UserCtx *user)$/;" f language:C++ typeref:typename:PetscErrorCode
-Destroy_LU src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Destroy_LU /;" d language:C file:
+Destroy_LU src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define Destroy_LU zDestroy_LU$/;" d language:C file:
Det3D src/snes/tutorials/ex77.c /^static inline void Det3D(PetscReal *detJ, const PetscScalar J[])$/;" f language:C typeref:typename:void file:
Device src/sys/objects/device/impls/cupm/cupmdevice.cxx /^template class Device<DeviceType::CUDA>;$/;" v language:C++ namespace:Petsc::device::cupm typeref:meta:class
Device src/sys/objects/device/impls/cupm/cupmdevice.cxx /^template class Device<DeviceType::HIP>;$/;" v language:C++ namespace:Petsc::device::cupm typeref:meta:class
@@ -7288,9 +7402,9 @@
EDIRS src/snes/utils/makefile /^EDIRS =$/;" m language:Make
EDIRS src/tao/util/makefile /^EDIRS =$/;" m language:Make
EDIRS src/ts/utils/makefile /^EDIRS =$/;" m language:Make
-EGifCloseFile src/sys/classes/draw/utils/image.c /^ #define EGifCloseFile(/;" d language:C file:
+EGifCloseFile src/sys/classes/draw/utils/image.c /^ #define EGifCloseFile(f, err) EGifCloseFile(/;" d language:C file:
EGifOpenFileHandle src/sys/classes/draw/utils/image.c /^ #define EGifOpenFileHandle(/;" d language:C file:
-EGifOpenFileName src/sys/classes/draw/utils/image.c /^ #define EGifOpenFileName(/;" d language:C file:
+EGifOpenFileName src/sys/classes/draw/utils/image.c /^ #define EGifOpenFileName(n, b, err) EGifOpenFileName(/;" d language:C file:
EH src/sys/error/err.c /^typedef struct _EH *EH;$/;" t language:C typeref:struct:_EH * file:
EIG_OFFSET src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define EIG_OFFSET /;" d language:C++
EIMEX src/binding/petsc4py/docs/apiref/petsc4py.PETSc.TS.Type-class.html /^ <a name="EIMEX"><\/a><span class="summary-name">EIMEX<\/span> = <code title="'eimex'"><c/;" a language:HTML
@@ -7299,12 +7413,12 @@
EInduction src/ts/utils/dmplexlandau/tutorials/ex2.c /^static PetscErrorCode EInduction(Vec X, Vec X_t, PetscInt step, PetscReal time, LandauCtx *ctx, /;" f language:C typeref:typename:PetscErrorCode file:
ELASTICITY src/dm/dt/fe/impls/opencl/feopencl.c /^ ELASTICITY = 1$/;" e language:C enum:__anonfa7278be0103 file:
ELEMENT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="ELEMENT"><\/a><span class="summary-name">ELEMENT<\/span> = <code title="14">14</;" a language:HTML
-ELEMENT src/dm/impls/stag/tests/ex18.c /^#define ELEMENT /;" d language:C file:
-ELEMENT src/dm/impls/stag/tests/ex30.c /^#define ELEMENT /;" d language:C file:
-ELEMENT src/dm/impls/stag/tests/ex5.c /^#define ELEMENT /;" d language:C file:
-ELEMENT src/dm/impls/stag/tutorials/ex1.c /^#define ELEMENT /;" d language:C file:
-ELEMENT src/dm/impls/stag/tutorials/ex2.c /^#define ELEMENT /;" d language:C file:
-ELEMENT src/dm/impls/stag/tutorials/ex3.c /^#define ELEMENT /;" d language:C file:
+ELEMENT src/dm/impls/stag/tests/ex18.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
+ELEMENT src/dm/impls/stag/tests/ex30.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
+ELEMENT src/dm/impls/stag/tests/ex5.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
+ELEMENT src/dm/impls/stag/tutorials/ex1.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
+ELEMENT src/dm/impls/stag/tutorials/ex2.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
+ELEMENT src/dm/impls/stag/tutorials/ex3.c /^#define ELEMENT DMSTAG_ELEMENT$/;" d language:C file:
ELEMENTAL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.SolverType-class.html /^ <a name="ELEMENTAL"><\/a><span class="summary-name">ELEMENTAL<\/span> = <code title="'el/;" a language:HTML
ELEMENTAL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Type-class.html /^ <a name="ELEMENTAL"><\/a><span class="summary-name">ELEMENTAL<\/span> = <code title="'el/;" a language:HTML
EMMSFC src/ts/tests/ex5.c /^#define EMMSFC /;" d language:C file:
@@ -7467,7 +7581,7 @@
ExchangeArrayByRank_Private src/dm/impls/plex/plexcheckinterface.c /^static PetscErrorCode ExchangeArrayByRank_Private(PetscObject obj, MPI_Datatype dt, PetscInt nsr/;" f language:C typeref:typename:PetscErrorCode file:
ExchangeVecByRank_Private src/dm/impls/plex/plexcheckinterface.c /^static PetscErrorCode ExchangeVecByRank_Private(PetscObject obj, PetscInt nsranks, const PetscMP/;" f language:C typeref:typename:PetscErrorCode file:
ExodusGetCellType_Internal src/dm/impls/plex/plexexodusii.c /^static PetscErrorCode ExodusGetCellType_Internal(const char *elem_type, DMPolytopeType *ct)$/;" f language:C typeref:typename:PetscErrorCode file:
-Exp src/sys/classes/draw/tests/ex6.c /^#define Exp /;" d language:C file:
+Exp src/sys/classes/draw/tests/ex6.c /^#define Exp PetscExpR/;" d language:C file:
ExpandJmap_Internal src/mat/impls/aij/mpi/mpiaij.c /^static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap/;" f language:C typeref:typename:PetscErrorCode file:
ExpectedNumDofs_Interior src/dm/dt/dualspace/impls/lagrange/tests/ex1.c /^static PetscErrorCode ExpectedNumDofs_Interior(PetscInt dim, PetscInt order, PetscInt formDegree/;" f language:C typeref:typename:PetscErrorCode file:
ExpectedNumDofs_Total src/dm/dt/dualspace/impls/lagrange/tests/ex1.c /^static PetscErrorCode ExpectedNumDofs_Total(PetscInt dim, PetscInt order, PetscInt formDegree, P/;" f language:C typeref:typename:PetscErrorCode file:
@@ -7709,32 +7823,32 @@
FREQ src/ts/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /^#define FREQ /;" d language:C file:
FROBENIUS src/binding/petsc4py/docs/apiref/petsc4py.PETSc.NormType-class.html /^ <a name="FROBENIUS"><\/a><span class="summary-name">FROBENIUS<\/span> = <code title="2">/;" a language:HTML
FRONT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT"><\/a><span class="summary-name">FRONT<\/span> = <code title="23">23<\/co/;" a language:HTML
-FRONT src/dm/impls/stag/tests/ex30.c /^#define FRONT /;" d language:C file:
-FRONT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT /;" d language:C file:
+FRONT src/dm/impls/stag/tests/ex30.c /^#define FRONT DMSTAG_FRONT$/;" d language:C file:
+FRONT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT DMSTAG_FRONT$/;" d language:C file:
FRONT_DOWN src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_DOWN"><\/a><span class="summary-name">FRONT_DOWN<\/span> = <code title="2/;" a language:HTML
-FRONT_DOWN src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN /;" d language:C file:
-FRONT_DOWN src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN /;" d language:C file:
+FRONT_DOWN src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN DMSTAG_FRONT_DOWN$/;" d language:C file:
+FRONT_DOWN src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN DMSTAG_FRONT_DOWN$/;" d language:C file:
FRONT_DOWN_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_DOWN_LEFT"><\/a><span class="summary-name">FRONT_DOWN_LEFT<\/span> = <cod/;" a language:HTML
-FRONT_DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN_LEFT /;" d language:C file:
-FRONT_DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN_LEFT /;" d language:C file:
+FRONT_DOWN_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN_LEFT DMSTAG_FRONT_DOWN_LEFT$/;" d language:C file:
+FRONT_DOWN_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN_LEFT DMSTAG_FRONT_DOWN_LEFT$/;" d language:C file:
FRONT_DOWN_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_DOWN_RIGHT"><\/a><span class="summary-name">FRONT_DOWN_RIGHT<\/span> = <c/;" a language:HTML
-FRONT_DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN_RIGHT /;" d language:C file:
-FRONT_DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN_RIGHT /;" d language:C file:
+FRONT_DOWN_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_DOWN_RIGHT DMSTAG_FRONT_DOWN_RIGHT$/;" d language:C file:
+FRONT_DOWN_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_DOWN_RIGHT DMSTAG_FRONT_DOWN_RIGHT$/;" d language:C file:
FRONT_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_LEFT"><\/a><span class="summary-name">FRONT_LEFT<\/span> = <code title="2/;" a language:HTML
-FRONT_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_LEFT /;" d language:C file:
-FRONT_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_LEFT /;" d language:C file:
+FRONT_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_LEFT DMSTAG_FRONT_LEFT$/;" d language:C file:
+FRONT_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_LEFT DMSTAG_FRONT_LEFT$/;" d language:C file:
FRONT_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_RIGHT"><\/a><span class="summary-name">FRONT_RIGHT<\/span> = <code title=/;" a language:HTML
-FRONT_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_RIGHT /;" d language:C file:
-FRONT_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_RIGHT /;" d language:C file:
+FRONT_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_RIGHT DMSTAG_FRONT_RIGHT$/;" d language:C file:
+FRONT_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_RIGHT DMSTAG_FRONT_RIGHT$/;" d language:C file:
FRONT_UP src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_UP"><\/a><span class="summary-name">FRONT_UP<\/span> = <code title="26">2/;" a language:HTML
-FRONT_UP src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP /;" d language:C file:
-FRONT_UP src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP /;" d language:C file:
+FRONT_UP src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP DMSTAG_FRONT_UP$/;" d language:C file:
+FRONT_UP src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP DMSTAG_FRONT_UP$/;" d language:C file:
FRONT_UP_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_UP_LEFT"><\/a><span class="summary-name">FRONT_UP_LEFT<\/span> = <code ti/;" a language:HTML
-FRONT_UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP_LEFT /;" d language:C file:
-FRONT_UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP_LEFT /;" d language:C file:
+FRONT_UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP_LEFT DMSTAG_FRONT_UP_LEFT$/;" d language:C file:
+FRONT_UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP_LEFT DMSTAG_FRONT_UP_LEFT$/;" d language:C file:
FRONT_UP_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="FRONT_UP_RIGHT"><\/a><span class="summary-name">FRONT_UP_RIGHT<\/span> = <code /;" a language:HTML
-FRONT_UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP_RIGHT /;" d language:C file:
-FRONT_UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP_RIGHT /;" d language:C file:
+FRONT_UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define FRONT_UP_RIGHT DMSTAG_FRONT_UP_RIGHT$/;" d language:C file:
+FRONT_UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define FRONT_UP_RIGHT DMSTAG_FRONT_UP_RIGHT$/;" d language:C file:
FROUDE src/ts/tutorials/ex76.c /^const PetscInt FROUDE = 1;$/;" v language:C typeref:typename:const PetscInt
FRecv src/sys/tests/ex8.c /^static PetscErrorCode FRecv(MPI_Comm comm, const PetscMPIInt tag[], PetscMPIInt rank, void *from/;" f language:C typeref:typename:PetscErrorCode file:
FSAL src/ts/impls/explicit/rk/rk.h /^ PetscBool FSAL; \/* flag to indicate if tableau is FSAL *\/$/;" m language:C++ struct:_RKTableau typeref:typename:PetscBool
@@ -8362,7 +8476,7 @@
G src/binding/petsc4py/docs/apiref/identifier-index-G.html /^<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="G">G<\/a><\/h2><\/td>$/;" a language:HTML
G src/binding/petsc4py/docs/apiref/identifier-index-G.html /^<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="G">G<\/a><\/h2><\/td>$/;" i language:HTML
G src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ PetscScalar *G; \/* such that Z = VG (band matrix)*\/$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:PetscScalar * file:
-G src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define G(/;" d language:C file:
+G src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define G(i, j) (plcg->G[/;" d language:C file:
G src/ksp/pc/impls/hypre/hypre.c /^ Mat G; \/* MatHYPRE *\/$/;" m language:C struct:__anona88fedbf0108 typeref:typename:Mat file:
G src/snes/tutorials/ex48.c /^#define G /;" d language:C file:
G src/tao/constrained/impls/almm/almm.h /^ Vec Px, LgradX, Ce, Ci, G; \/* aliased vectors (do not destroy!) *\/$/;" m language:C++ struct:__anonb0a5055f0108 typeref:typename:Vec
@@ -8566,7 +8680,7 @@
GROPPCG src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="GROPPCG"><\/a><span class="summary-name">GROPPCG<\/span> = <code title="'groppc/;" a language:HTML
GRS src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define GRS(/;" d language:C++
GRS src/ksp/ksp/impls/gmres/gmresimpl.h /^ #define GRS(/;" d language:C++
-GRS src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define GRS(/;" d language:C++
+GRS src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define GRS(a) (lgmres->rs_origin + (a)) \/* GRS /;" d language:C++
GS src/ksp/pc/impls/amgx/amgx.cxx /^ GS,$/;" e language:C++ enum:AmgXSmoother file:
GS_VEC_SZ src/ksp/pc/impls/tfs/gs.c /^#define GS_VEC_SZ /;" d language:C file:
GTOL src/vec/is/utils/isltog.c /^#define GTOL(/;" d language:C file:
@@ -8842,7 +8956,7 @@
HALF_SIZE src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Viewer.Size-class.html /^ <a name="HALF_SIZE"><\/a><span class="summary-name">HALF_SIZE<\/span> = <code title="-4"/;" a language:HTML
HASATTRIBUTE_UNUSED src/sys/yaml/src/yaml_private.h /^# define HASATTRIBUTE_UNUSED$/;" d language:C++
HASH src/binding/petsc4py/docs/apiref/petsc4py.PETSc.LGMap.Type-class.html /^ <a name="HASH"><\/a><span class="summary-name">HASH<\/span> = <code title="'hash'"><code/;" a language:HTML
-HASH src/mat/impls/baij/mpi/mpibaij.c /^#define HASH(/;" d language:C file:
+HASH src/mat/impls/baij/mpi/mpibaij.c /^#define HASH(size, key, tmp) (tmp = (key)*HASH_/;" d language:C file:
HASH_KEY src/mat/impls/baij/mpi/mpibaij.c /^#define HASH_KEY /;" d language:C file:
HAS_BLAS src/ksp/pc/impls/parms/parms.c /^#define HAS_BLAS$/;" d language:C file:
HAVE_CONFIG_H src/ksp/pc/impls/ml/ml.c /^ #define HAVE_CONFIG_H$/;" d language:C file:
@@ -9221,7 +9335,7 @@
IPMUpdateK src/tao/constrained/impls/ipm/ipm.c /^PetscErrorCode IPMUpdateK(Tao tao)$/;" f language:C typeref:typename:PetscErrorCode
IRKGAUSS src/ksp/ksp/tutorials/ex74.c /^#define IRKGAUSS /;" d language:C file:
IRKTableau src/ts/impls/implicit/irk/irk.c /^typedef struct _IRKTableau *IRKTableau;$/;" t language:C typeref:struct:_IRKTableau * file:
-IS include/petsc/finclude/petscis.h /^#define IS /;" d language:C++
+IS include/petsc/finclude/petscis.h /^#define IS type(tIS)/;" d language:C++
IS include/petscistypes.h /^typedef struct _p_IS *IS;$/;" t language:C++ typeref:struct:_p_IS *
IS src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Type-class.html /^ <a name="IS"><\/a><span class="summary-name">IS<\/span> = <code title="'is'"><code class/;" a language:HTML
ISAdjustForBlockSize src/mat/impls/aij/mpi/mpiov.c /^static PetscErrorCode ISAdjustForBlockSize(PetscInt bs, PetscInt imax, IS is[])$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -9242,7 +9356,7 @@
ISBlockSetIndices_Block src/vec/is/is/impls/block/block.c /^static PetscErrorCode ISBlockSetIndices_Block(IS is, PetscInt bs, PetscInt n, const PetscInt idx/;" f language:C typeref:typename:PetscErrorCode file:
ISBuildTwoSided src/vec/is/is/utils/iscoloring.c /^PetscErrorCode ISBuildTwoSided(IS ito, IS toindx, IS *rows)$/;" f language:C typeref:typename:PetscErrorCode
ISClearInfoCache src/vec/is/is/interface/index.c /^PetscErrorCode ISClearInfoCache(IS is, PetscBool clear_permanent_local)$/;" f language:C typeref:typename:PetscErrorCode
-ISColoring include/petsc/finclude/petscis.h /^#define ISColoring /;" d language:C++
+ISColoring include/petsc/finclude/petscis.h /^#define ISColoring type(tISColoring)/;" d language:C++
ISColoring include/petscistypes.h /^typedef struct _n_ISColoring *ISColoring;$/;" t language:C++ typeref:struct:_n_ISColoring *
ISColoringCreate src/vec/is/is/utils/iscoloring.c /^PetscErrorCode ISColoringCreate(MPI_Comm comm, PetscInt ncolors, PetscInt n, const ISColoringVal/;" f language:C typeref:typename:PetscErrorCode
ISColoringDestroy src/vec/is/is/utils/iscoloring.c /^PetscErrorCode ISColoringDestroy(ISColoring *iscoloring)$/;" f language:C typeref:typename:PetscErrorCode
@@ -9497,19 +9611,19 @@
ISView_General src/vec/is/is/impls/general/general.c /^static PetscErrorCode ISView_General(IS is, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode file:
ISView_General_HDF5 src/vec/is/is/impls/general/general.c /^static PetscErrorCode ISView_General_HDF5(IS is, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode file:
ISView_Stride src/vec/is/is/impls/stride/stride.c /^PetscErrorCode ISView_Stride(IS is, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
-IS_ALPHA src/sys/yaml/src/yaml_private.h /^#define IS_ALPHA(/;" d language:C++
+IS_ALPHA src/sys/yaml/src/yaml_private.h /^#define IS_ALPHA(string) IS_ALPHA_/;" d language:C++
IS_ALPHA_AT src/sys/yaml/src/yaml_private.h /^#define IS_ALPHA_AT(/;" d language:C++
-IS_ASCII src/sys/yaml/src/yaml_private.h /^#define IS_ASCII(/;" d language:C++
+IS_ASCII src/sys/yaml/src/yaml_private.h /^#define IS_ASCII(string) IS_ASCII_/;" d language:C++
IS_ASCII_AT src/sys/yaml/src/yaml_private.h /^#define IS_ASCII_AT(/;" d language:C++
-IS_BLANK src/sys/yaml/src/yaml_private.h /^#define IS_BLANK(/;" d language:C++
-IS_BLANKZ src/sys/yaml/src/yaml_private.h /^#define IS_BLANKZ(/;" d language:C++
+IS_BLANK src/sys/yaml/src/yaml_private.h /^#define IS_BLANK(string) IS_BLANK_/;" d language:C++
+IS_BLANKZ src/sys/yaml/src/yaml_private.h /^#define IS_BLANKZ(string) IS_BLANKZ_/;" d language:C++
IS_BLANKZ_AT src/sys/yaml/src/yaml_private.h /^#define IS_BLANKZ_AT(/;" d language:C++
IS_BLANK_AT src/sys/yaml/src/yaml_private.h /^#define IS_BLANK_AT(/;" d language:C++
IS_BLOCK src/vec/is/sf/interface/vscat.c /^ IS_BLOCK,$/;" e language:C enum:__anon1a0575ce0103 file:
-IS_BOM src/sys/yaml/src/yaml_private.h /^#define IS_BOM(/;" d language:C++
+IS_BOM src/sys/yaml/src/yaml_private.h /^#define IS_BOM(string) IS_BOM_/;" d language:C++
IS_BOM_AT src/sys/yaml/src/yaml_private.h /^#define IS_BOM_AT(/;" d language:C++
-IS_BREAK src/sys/yaml/src/yaml_private.h /^#define IS_BREAK(/;" d language:C++
-IS_BREAKZ src/sys/yaml/src/yaml_private.h /^#define IS_BREAKZ(/;" d language:C++
+IS_BREAK src/sys/yaml/src/yaml_private.h /^#define IS_BREAK(string) IS_BREAK_/;" d language:C++
+IS_BREAKZ src/sys/yaml/src/yaml_private.h /^#define IS_BREAKZ(string) IS_BREAKZ_/;" d language:C++
IS_BREAKZ_AT src/sys/yaml/src/yaml_private.h /^#define IS_BREAKZ_AT(/;" d language:C++
IS_BREAK_AT src/sys/yaml/src/yaml_private.h /^#define IS_BREAK_AT(/;" d language:C++
IS_Block src/vec/is/is/impls/block/block.c /^} IS_Block;$/;" t language:C typeref:struct:__anon71e715290108 file:
@@ -9517,10 +9631,10 @@
IS_CLASSID src/vec/is/is/interface/index.c /^PetscClassId IS_CLASSID;$/;" v language:C typeref:typename:PetscClassId
IS_COLORING_GLOBAL include/petscis.h /^ IS_COLORING_GLOBAL,$/;" e language:C++ enum:__anonf77546090403
IS_COLORING_LOCAL include/petscis.h /^ IS_COLORING_LOCAL$/;" e language:C++ enum:__anonf77546090403
-IS_COLORING_MAX include/petscis.h /^#define IS_COLORING_MAX /;" d language:C++
-IS_CRLF src/sys/yaml/src/yaml_private.h /^#define IS_CRLF(/;" d language:C++
+IS_COLORING_MAX include/petscis.h /^#define IS_COLORING_MAX PETSC_IS_COLORING_MAX$/;" d language:C++
+IS_CRLF src/sys/yaml/src/yaml_private.h /^#define IS_CRLF(string) IS_CRLF_/;" d language:C++
IS_CRLF_AT src/sys/yaml/src/yaml_private.h /^#define IS_CRLF_AT(/;" d language:C++
-IS_DIGIT src/sys/yaml/src/yaml_private.h /^#define IS_DIGIT(/;" d language:C++
+IS_DIGIT src/sys/yaml/src/yaml_private.h /^#define IS_DIGIT(string) IS_DIGIT_/;" d language:C++
IS_DIGIT_AT src/sys/yaml/src/yaml_private.h /^#define IS_DIGIT_AT(/;" d language:C++
IS_FILE_CLASSID include/petscis.h /^#define IS_FILE_CLASSID /;" d language:C++
IS_GENERAL src/vec/is/sf/interface/vscat.c /^ IS_GENERAL,$/;" e language:C enum:__anon1a0575ce0103 file:
@@ -9528,7 +9642,7 @@
IS_GTOLM_DROP include/petscis.h /^ IS_GTOLM_DROP$/;" e language:C++ enum:__anonf77546090303
IS_GTOLM_MASK include/petscis.h /^ IS_GTOLM_MASK,$/;" e language:C++ enum:__anonf77546090303
IS_General src/vec/is/is/impls/general/general.h /^} IS_General;$/;" t language:C++ typeref:struct:__anon7fb2ebd40108
-IS_HEX src/sys/yaml/src/yaml_private.h /^#define IS_HEX(/;" d language:C++
+IS_HEX src/sys/yaml/src/yaml_private.h /^#define IS_HEX(string) IS_HEX_/;" d language:C++
IS_HEX_AT src/sys/yaml/src/yaml_private.h /^#define IS_HEX_AT(/;" d language:C++
IS_IDENTITY include/petscis.h /^ IS_IDENTITY = 4,$/;" e language:C++ enum:__anonf77546090103
IS_INFO_FALSE include/petsc/private/isimpl.h /^ IS_INFO_FALSE = 1,$/;" e language:C++ enum:__anon862b9db40103
@@ -9544,21 +9658,21 @@
IS_Load include/petsc/private/isimpl.h /^PETSC_EXTERN PetscLogEvent IS_Load;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogEvent
IS_Load src/vec/is/is/interface/index.c /^PetscLogEvent IS_Load;$/;" v language:C typeref:typename:PetscLogEvent
IS_PERMUTATION include/petscis.h /^ IS_PERMUTATION = 2,$/;" e language:C++ enum:__anonf77546090103
-IS_PRINTABLE src/sys/yaml/src/yaml_private.h /^#define IS_PRINTABLE(/;" d language:C++
+IS_PRINTABLE src/sys/yaml/src/yaml_private.h /^#define IS_PRINTABLE(string) IS_PRINTABLE_/;" d language:C++
IS_PRINTABLE_AT src/sys/yaml/src/yaml_private.h /^#define IS_PRINTABLE_AT(/;" d language:C++
IS_SORTED include/petscis.h /^ IS_SORTED = 0,$/;" e language:C++ enum:__anonf77546090103
-IS_SPACE src/sys/yaml/src/yaml_private.h /^#define IS_SPACE(/;" d language:C++
-IS_SPACEZ src/sys/yaml/src/yaml_private.h /^#define IS_SPACEZ(/;" d language:C++
+IS_SPACE src/sys/yaml/src/yaml_private.h /^#define IS_SPACE(string) IS_SPACE_/;" d language:C++
+IS_SPACEZ src/sys/yaml/src/yaml_private.h /^#define IS_SPACEZ(string) IS_SPACEZ_/;" d language:C++
IS_SPACEZ_AT src/sys/yaml/src/yaml_private.h /^#define IS_SPACEZ_AT(/;" d language:C++
IS_SPACE_AT src/sys/yaml/src/yaml_private.h /^#define IS_SPACE_AT(/;" d language:C++
IS_STRIDE src/vec/is/sf/interface/vscat.c /^ IS_STRIDE$/;" e language:C enum:__anon1a0575ce0103 file:
IS_Stride src/vec/is/is/impls/stride/stride.c /^} IS_Stride;$/;" t language:C typeref:struct:__anon672069a90108 file:
-IS_TAB src/sys/yaml/src/yaml_private.h /^#define IS_TAB(/;" d language:C++
+IS_TAB src/sys/yaml/src/yaml_private.h /^#define IS_TAB(string) IS_TAB_/;" d language:C++
IS_TAB_AT src/sys/yaml/src/yaml_private.h /^#define IS_TAB_AT(/;" d language:C++
IS_UNIQUE include/petscis.h /^ IS_UNIQUE = 1,$/;" e language:C++ enum:__anonf77546090103
IS_View include/petsc/private/isimpl.h /^PETSC_EXTERN PetscLogEvent IS_View;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogEvent
IS_View src/vec/is/is/interface/index.c /^PetscLogEvent IS_View;$/;" v language:C typeref:typename:PetscLogEvent
-IS_Z src/sys/yaml/src/yaml_private.h /^#define IS_Z(/;" d language:C++
+IS_Z src/sys/yaml/src/yaml_private.h /^#define IS_Z(string) IS_Z_/;" d language:C++
IS_Z_AT src/sys/yaml/src/yaml_private.h /^#define IS_Z_AT(/;" d language:C++
IS_inact src/snes/impls/vi/rs/virsimpl.h /^ IS IS_inact;$/;" m language:C++ struct:__anon9e32dda60108 typeref:typename:IS
IS_inact_prev src/snes/impls/vi/rs/virsimpl.h /^ IS IS_inact_prev;$/;" m language:C++ struct:__anon9e32dda60108 typeref:typename:IS
@@ -9661,7 +9775,7 @@
IncrementSize src/sys/objects/device/tests/ex7.c /^static PetscErrorCode IncrementSize(PetscRandom rand, PetscInt *value)$/;" f language:C typeref:typename:PetscErrorCode file:
Index src/benchmarks/makefile /^Index: Index.o $/;" t language:Make
Index src/binding/petsc4py/docs/usrman/genindex.html /^<h1 id="index">Index<\/h1>$/;" h language:HTML
-Index — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/genindex.html /^ <title>Index — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Index — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/genindex.html /^ <title>Index — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
IndexSpaceGet src/mat/impls/localref/mlocalref.c /^#define IndexSpaceGet(/;" d language:C file:
IndexSpaceRestore src/mat/impls/localref/mlocalref.c /^#define IndexSpaceRestore(/;" d language:C file:
Inf_nb src/tao/constrained/impls/ipm/ipm.h /^ Vec Zero_nb, One_nb, Inf_nb;$/;" m language:C++ struct:__anon1484705d0108 typeref:typename:Vec
@@ -9792,7 +9906,7 @@
Install config/BuildSystem/config/packages/xSDKTrilinos.py /^ def Install(self):$/;" m language:Python class:Configure
Install config/BuildSystem/config/packages/zlib.py /^ def Install(self):$/;" m language:Python class:Configure
Install config/BuildSystem/config/packages/zstd.py /^ def Install(self):$/;" m language:Python class:Configure
-Installation — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/install.html /^ <title>Installation — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Installation — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/install.html /^ <title>Installation — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
Installation? src/binding/petsc4py/docs/usrman/install.html /^<h1>Installation<a class="headerlink" href="#installation" title="Permalink to this heading">?</;" h language:HTML
Installer config/install.py /^class Installer(script.Script):$/;" c language:Python
IntArrayViewFromOptions src/dm/impls/plex/plexinterpolate.c /^static PetscErrorCode IntArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[]/;" f language:C typeref:typename:PetscErrorCode file:
@@ -9829,10 +9943,12 @@
J include/petscfe.h /^ PetscReal *J; \/* J[Nc*Np*dE*dE]: The Jacobian of the map from reference to r/;" m language:C++ struct:_n_PetscFEGeom typeref:typename:PetscReal *
J include/petsclandau.h /^ Mat J;$/;" m language:C++ struct:__anon8db14aa20408 typeref:typename:Mat
J src/binding/petsc4py/demo/bratu3d/bratu3d.py /^ J = None$/;" v language:Python
+J src/binding/petsc4py/demo/bratu3d/bratu3d.py /^ J = da.createMat()$/;" v language:Python
J src/binding/petsc4py/demo/ode/bouncing_ball.py /^J = PETSc.Mat().create()$/;" v language:Python
J src/binding/petsc4py/demo/ode/ce.py /^J = PETSc.Mat().createDense([ode.n,ode.n], comm=ode.comm)$/;" v language:Python
J src/binding/petsc4py/demo/ode/orego.py /^J = PETSc.Mat().createDense([ode.n, ode.n], comm=ode.comm)$/;" v language:Python
J src/binding/petsc4py/demo/ode/rober.py /^J = PETSc.Mat().createDense([ode.n, ode.n], comm=ode.comm)$/;" v language:Python
+J src/binding/petsc4py/demo/ode/vanderpol.py /^ J = PETSc.Mat().create()$/;" v language:Python
J src/binding/petsc4py/demo/ode/vanderpol.py /^ J = PETSc.Mat().createDense([ode.n,ode.n], comm=ode.comm)$/;" v language:Python
J src/binding/petsc4py/demo/petsc-examples/ksp/ex2.py /^ J = Ii + 1$/;" v language:Python
J src/binding/petsc4py/demo/petsc-examples/ksp/ex2.py /^ J = Ii + n$/;" v language:Python
@@ -10027,7 +10143,7 @@
KOKKOS_SHARED_LEVEL src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx /^#define KOKKOS_SHARED_LEVEL /;" d language:C++ file:
KPOW src/snes/tutorials/ex59.c /^#define KPOW /;" d language:C file:
KSConv src/ts/tests/ex28.c /^static PetscErrorCode KSConv(TS ts, PetscInt step, PetscReal t, Vec U, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
-KSP include/petsc/finclude/petscksp.h /^#define KSP /;" d language:C++
+KSP include/petsc/finclude/petscksp.h /^#define KSP type(tKSP)/;" d language:C++
KSP include/petscksp.h /^typedef struct _p_KSP *KSP;$/;" t language:C++ typeref:struct:_p_KSP *
KSP src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.Type-class.html /^ <a name="KSP"><\/a><span class="summary-name">KSP<\/span> = <code title="'ksp'"><code cl/;" a language:HTML
KSPAGMRESBuildBasis src/ksp/ksp/impls/gmres/agmres/agmres.c /^static PetscErrorCode KSPAGMRESBuildBasis(KSP ksp)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -10080,7 +10196,7 @@
KSPCGDestroy_GLTR src/ksp/ksp/impls/cg/gltr/gltr.c /^static PetscErrorCode KSPCGDestroy_GLTR(KSP ksp)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPCGDestroy_NASH src/ksp/ksp/impls/cg/nash/nash.c /^static PetscErrorCode KSPCGDestroy_NASH(KSP ksp)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPCGDestroy_STCG src/ksp/ksp/impls/cg/stcg/stcg.c /^static PetscErrorCode KSPCGDestroy_STCG(KSP ksp)$/;" f language:C typeref:typename:PetscErrorCode file:
-KSPCGGLTR include/petscksp.h /^#define KSPCGGLTR /;" d language:C++
+KSPCGGLTR include/petscksp.h /^#define KSPCGGLTR PETSC_DEPRECATED_MACRO("GCC warning \\"KSPCGGLTR /;" d language:C++
KSPCGGLTRGetLambda include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPGLTRGetLambda (since v3.12)") static inline PetscErrorCode KSP/;" f language:C++
KSPCGGLTRGetMinEig include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPGLTRGetMinEig (since v3.12)") static inline PetscErrorCode KSP/;" f language:C++
KSPCGGetNormD src/ksp/ksp/impls/cg/cgtype.c /^PetscErrorCode KSPCGGetNormD(KSP ksp, PetscReal *norm_d)$/;" f language:C typeref:typename:PetscErrorCode
@@ -10093,12 +10209,12 @@
KSPCGGetObjFcn_STCG src/ksp/ksp/impls/cg/stcg/stcg.c /^static PetscErrorCode KSPCGGetObjFcn_STCG(KSP ksp, PetscReal *o_fcn)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPCGLS include/petsc/finclude/petscksp.h /^#define KSPCGLS /;" d language:C++
KSPCGLS include/petscksp.h /^#define KSPCGLS /;" d language:C++
-KSPCGNASH include/petscksp.h /^#define KSPCGNASH /;" d language:C++
+KSPCGNASH include/petscksp.h /^#define KSPCGNASH PETSC_DEPRECATED_MACRO("GCC warning \\"KSPCGNASH /;" d language:C++
KSPCGNE include/petsc/finclude/petscksp.h /^#define KSPCGNE /;" d language:C++
KSPCGNE include/petscksp.h /^#define KSPCGNE /;" d language:C++
KSPCGS include/petsc/finclude/petscksp.h /^#define KSPCGS /;" d language:C++
KSPCGS include/petscksp.h /^#define KSPCGS /;" d language:C++
-KSPCGSTCG include/petscksp.h /^#define KSPCGSTCG /;" d language:C++
+KSPCGSTCG include/petscksp.h /^#define KSPCGSTCG PETSC_DEPRECATED_MACRO("GCC warning \\"KSPCGSTCG /;" d language:C++
KSPCGSetFromOptions_GLTR src/ksp/ksp/impls/cg/gltr/gltr.c /^static PetscErrorCode KSPCGSetFromOptions_GLTR(KSP ksp, PetscOptionItems *PetscOptionsObject)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPCGSetFromOptions_NASH src/ksp/ksp/impls/cg/nash/nash.c /^static PetscErrorCode KSPCGSetFromOptions_NASH(KSP ksp, PetscOptionItems *PetscOptionsObject)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPCGSetFromOptions_STCG src/ksp/ksp/impls/cg/stcg/stcg.c /^static PetscErrorCode KSPCGSetFromOptions_STCG(KSP ksp, PetscOptionItems *PetscOptionsObject)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -10251,15 +10367,15 @@
KSPDGMRESSetRatio src/ksp/ksp/impls/gmres/dgmres/dgmres.c /^PetscErrorCode KSPDGMRESSetRatio(KSP ksp, PetscReal ratio)$/;" f language:C typeref:typename:PetscErrorCode
KSPDGMRESSetRatio_DGMRES src/ksp/ksp/impls/gmres/dgmres/dgmres.c /^static PetscErrorCode KSPDGMRESSetRatio_DGMRES(KSP ksp, PetscReal ratio)$/;" f language:C typeref:typename:PetscErrorCode file:
KSPDGMRESUpdateHessenberg src/ksp/ksp/impls/gmres/dgmres/dgmres.c /^static PetscErrorCode KSPDGMRESUpdateHessenberg(KSP ksp, PetscInt it, PetscBool hapend, PetscRea/;" f language:C typeref:typename:PetscErrorCode file:
-KSPDefaultConverged include/petscksp.h /^#define KSPDefaultConverged /;" d language:C++
+KSPDefaultConverged include/petscksp.h /^#define KSPDefaultConverged (KSPDefaultConverged,/;" d language:C++
KSPDefaultConverged include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedDefault() (since version 3.5)") static inline void KS/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedDefault() (since version 3.5)")void
-KSPDefaultConvergedCreate include/petscksp.h /^#define KSPDefaultConvergedCreate /;" d language:C++
+KSPDefaultConvergedCreate include/petscksp.h /^#define KSPDefaultConvergedCreate (KSPDefaultConvergedCreate,/;" d language:C++
KSPDefaultConvergedCreate include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedDefaultCreate() (since version 3.5)") static inline v/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedDefaultCreate() (since version 3.5)")void
-KSPDefaultConvergedDestroy include/petscksp.h /^#define KSPDefaultConvergedDestroy /;" d language:C++
+KSPDefaultConvergedDestroy include/petscksp.h /^#define KSPDefaultConvergedDestroy (KSPDefaultConvergedDestroy,/;" d language:C++
KSPDefaultConvergedDestroy include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedDefaultDestroy() (since version 3.5)") static inline /;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedDefaultDestroy() (since version 3.5)")void
-KSPDefaultConvergedSetUIRNorm include/petscksp.h /^#define KSPDefaultConvergedSetUIRNorm /;" d language:C++
+KSPDefaultConvergedSetUIRNorm include/petscksp.h /^#define KSPDefaultConvergedSetUIRNorm (KSPDefaultConvergedSetUIRNorm,/;" d language:C++
KSPDefaultConvergedSetUIRNorm include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedDefaultSetUIRNorm() (since version 3.5)") static inli/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedDefaultSetUIRNorm() (since version 3.5)")void
-KSPDefaultConvergedSetUMIRNorm include/petscksp.h /^#define KSPDefaultConvergedSetUMIRNorm /;" d language:C++
+KSPDefaultConvergedSetUMIRNorm include/petscksp.h /^#define KSPDefaultConvergedSetUMIRNorm (KSPDefaultConvergedSetUMIRNorm,/;" d language:C++
KSPDefaultConvergedSetUMIRNorm include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedDefaultSetUMIRNorm() (since version 3.5)") static inl/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedDefaultSetUMIRNorm() (since version 3.5)")void
KSPDestroy src/ksp/ksp/interface/itfunc.c /^PetscErrorCode KSPDestroy(KSP *ksp)$/;" f language:C typeref:typename:PetscErrorCode
KSPDestroyDefault src/ksp/ksp/interface/iterativ.c /^PetscErrorCode KSPDestroyDefault(KSP ksp)$/;" f language:C typeref:typename:PetscErrorCode
@@ -10430,7 +10546,7 @@
KSPGetTotalIterations src/ksp/ksp/interface/iterativ.c /^PetscErrorCode KSPGetTotalIterations(KSP ksp, PetscInt *its)$/;" f language:C typeref:typename:PetscErrorCode
KSPGetType src/ksp/ksp/interface/itcreate.c /^PetscErrorCode KSPGetType(KSP ksp, KSPType *type)$/;" f language:C typeref:typename:PetscErrorCode
KSPGetVecs include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPCreateVecs() (since version 3.6)") static inline PetscErrorCod/;" f language:C++
-KSPGuess include/petsc/finclude/petscksp.h /^#define KSPGuess /;" d language:C++
+KSPGuess include/petsc/finclude/petscksp.h /^#define KSPGuess type(tKSPGuess)/;" d language:C++
KSPGuess include/petscksp.h /^typedef struct _p_KSPGuess *KSPGuess;$/;" t language:C++ typeref:struct:_p_KSPGuess *
KSPGuessCreate src/ksp/ksp/interface/iguess.c /^PetscErrorCode KSPGuessCreate(MPI_Comm comm, KSPGuess *guess)$/;" f language:C typeref:typename:PetscErrorCode
KSPGuessCreate_Dummy src/ts/tests/ex11.c /^static PetscErrorCode KSPGuessCreate_Dummy(KSPGuess ksp)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -10832,7 +10948,7 @@
KSPSetUseExplicitTranspose src/ksp/ksp/interface/itfunc.c /^PetscErrorCode KSPSetUseExplicitTranspose(KSP ksp, PetscBool flg)$/;" f language:C typeref:typename:PetscErrorCode
KSPSetUseFischerGuess src/ksp/ksp/interface/itcl.c /^PetscErrorCode KSPSetUseFischerGuess(KSP ksp, PetscInt model, PetscInt size)$/;" f language:C typeref:typename:PetscErrorCode
KSPSetWorkVecs src/ksp/ksp/interface/iterativ.c /^PetscErrorCode KSPSetWorkVecs(KSP ksp, PetscInt nw)$/;" f language:C typeref:typename:PetscErrorCode
-KSPSkipConverged include/petscksp.h /^#define KSPSkipConverged /;" d language:C++
+KSPSkipConverged include/petscksp.h /^#define KSPSkipConverged (KSPSkipConverged,/;" d language:C++
KSPSkipConverged include/petscksp.h /^PETSC_DEPRECATED_FUNCTION("Use KSPConvergedSkip() (since version 3.5)") static inline void KSPSk/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use KSPConvergedSkip() (since version 3.5)")void
KSPSolve src/ksp/ksp/interface/itfunc.c /^PetscErrorCode KSPSolve(KSP ksp, Vec b, Vec x)$/;" f language:C typeref:typename:PetscErrorCode
KSPSolveTranspose src/ksp/ksp/interface/itfunc.c /^PetscErrorCode KSPSolveTranspose(KSP ksp, Vec b, Vec x)$/;" f language:C typeref:typename:PetscErrorCode
@@ -11057,6 +11173,7 @@
KSP_Solve_FS_U src/ksp/pc/impls/fieldsplit/fieldsplit.c /^PetscLogEvent KSP_Solve_FS_0, KSP_Solve_FS_1, KSP_Solve_FS_S, KSP_Solve_FS_U, KSP_Solve_FS_L, KS/;" v language:C typeref:typename:PetscLogEvent
KSP_TSIRM src/ksp/ksp/impls/tsirm/tsirm.c /^} KSP_TSIRM;$/;" t language:C typeref:struct:__anon90e794c80108 file:
KSP_TYPE src/binding/petsc4py/test/test_ksp.py /^ KSP_TYPE = PETSc.KSP.Type.CHEBYCHEV$/;" v language:Python class:TestKSPCHEBYCHEV
+KSP_TYPE src/binding/petsc4py/test/test_ksp.py /^ KSP_TYPE = PETSc.KSP.Type.CHEBYSHEV$/;" v language:Python class:TestKSPCHEBYCHEV
KSP_TYPE src/binding/petsc4py/test/test_ksp.py /^ KSP_TYPE = None$/;" v language:Python class:BaseTestKSP
KSP_TYPE src/binding/petsc4py/test/test_ksp.py /^ KSP_TYPE = PETSc.KSP.Type.BCGS$/;" v language:Python class:TestKSPBCGS
KSP_TYPE src/binding/petsc4py/test/test_ksp.py /^ KSP_TYPE = PETSc.KSP.Type.BCGSL$/;" v language:Python class:TestKSPBCGSL
@@ -11219,12 +11336,12 @@
LCL_FORWARD2 src/tao/pde_constrained/impls/lcl/lcl.h /^#define LCL_FORWARD2 /;" d language:C++
LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="LEFT"><\/a><span class="summary-name">LEFT<\/span> = <code title="13">13<\/code/;" a language:HTML
LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.Side-class.html /^ <a name="LEFT"><\/a><span class="summary-name">LEFT<\/span> = <code title="0">0<\/code>$/;" a language:HTML
-LEFT src/dm/impls/stag/tests/ex18.c /^#define LEFT /;" d language:C file:
-LEFT src/dm/impls/stag/tests/ex30.c /^#define LEFT /;" d language:C file:
-LEFT src/dm/impls/stag/tests/ex5.c /^#define LEFT /;" d language:C file:
-LEFT src/dm/impls/stag/tutorials/ex1.c /^#define LEFT /;" d language:C file:
-LEFT src/dm/impls/stag/tutorials/ex2.c /^#define LEFT /;" d language:C file:
-LEFT src/dm/impls/stag/tutorials/ex3.c /^#define LEFT /;" d language:C file:
+LEFT src/dm/impls/stag/tests/ex18.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
+LEFT src/dm/impls/stag/tests/ex30.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
+LEFT src/dm/impls/stag/tests/ex5.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
+LEFT src/dm/impls/stag/tutorials/ex1.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
+LEFT src/dm/impls/stag/tutorials/ex2.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
+LEFT src/dm/impls/stag/tutorials/ex3.c /^#define LEFT DMSTAG_LEFT$/;" d language:C file:
LEFT src/ksp/pc/impls/tfs/xxt.c /^#define LEFT /;" d language:C file:
LEFT src/ksp/pc/impls/tfs/xyt.c /^#define LEFT /;" d language:C file:
LForm_MomentumRHS src/ksp/ksp/tutorials/ex70.c /^static void LForm_MomentumRHS(PetscScalar Fe[], PetscScalar coords[], PetscScalar fx[], PetscSca/;" f language:C typeref:typename:void file:
@@ -12817,9 +12934,9 @@
LU6SOL src/mat/impls/aij/seq/lusol/lusol.c /^ #define LU6SOL /;" d language:C file:
LUSOL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.SolverType-class.html /^ <a name="LUSOL"><\/a><span class="summary-name">LUSOL<\/span> = <code title="'lusol'"><c/;" a language:HTML
LUstruct src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ LUstruct_t LUstruct;$/;" m language:C struct:__anon0965ce5f0108 typeref:typename:LUstruct_t file:
-LUstructFree src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstructFree /;" d language:C file:
-LUstructInit src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstructInit /;" d language:C file:
-LUstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstruct_t /;" d language:C file:
+LUstructFree src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstructFree zLUstructFree$/;" d language:C file:
+LUstructInit src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstructInit zLUstructInit$/;" d language:C file:
+LUstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define LUstruct_t zLUstruct_t$/;" d language:C file:
LXOR src/vec/is/sf/impls/basic/cuda/sfcuda.cu /^struct LXOR {$/;" s language:C file:
LXOR src/vec/is/sf/impls/basic/kokkos/sfkok.kokkos.cxx /^struct LXOR {$/;" s language:C++ file:
L_save src/tao/leastsquares/impls/pounders/pounders.h /^ PetscReal *L_save; \/* n*(n+1)\/2 x npmax *\/$/;" m language:C++ struct:__anon6f6a35340108 typeref:typename:PetscReal *
@@ -14201,7 +14318,7 @@
MATSOLVERUMFPACK include/petscmat.h /^#define MATSOLVERUMFPACK /;" d language:C++
MATSUBMATRIX include/petsc/finclude/petscmat.h /^#define MATSUBMATRIX /;" d language:C++
MATSUBMATRIX include/petscmat.h /^#define MATSUBMATRIX /;" d language:C++
-MATTRANSPOSEMAT include/petscmat.h /^#define MATTRANSPOSEMAT /;" d language:C++
+MATTRANSPOSEMAT include/petscmat.h /^#define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO("GCC warning \\"MATTRANSPOSEMAT /;" d language:C++
MATTRANSPOSEVIRTUAL include/petsc/finclude/petscmat.h /^#define MATTRANSPOSEVIRTUAL /;" d language:C++
MATTRANSPOSEVIRTUAL include/petscmat.h /^#define MATTRANSPOSEVIRTUAL /;" d language:C++
MATVEC2 src/ts/utils/dmplexlandau/plexland.c /^#define MATVEC2(/;" d language:C file:
@@ -14617,7 +14734,7 @@
MDOT_WORKGROUP_SIZE src/vec/vec/impls/seq/seqcuda/veccuda2.cu /^#define MDOT_WORKGROUP_SIZE /;" d language:C file:
MDotFunctor src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx /^ MDotFunctor(ConstPetscScalarKokkosView &xv, const PetscInt ny, \/* Number of valid entries in /;" f language:C++ struct:MDotFunctor file:
MDotFunctor src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx /^struct MDotFunctor {$/;" s language:C++ file:
-MEDIAN src/sys/utils/sorti.c /^#define MEDIAN(/;" d language:C file:
+MEDIAN src/sys/utils/sorti.c /^#define MEDIAN(v, right) MEDIAN3/;" d language:C file:
MEDIAN3 src/sys/utils/sorti.c /^#define MEDIAN3(/;" d language:C file:
MEHess src/dm/field/impls/da/dmfieldda.c /^#define MEHess(/;" d language:C file:
MEMORYSCALABLE src/binding/petsc4py/docs/apiref/petsc4py.PETSc.AO.Type-class.html /^ <a name="MEMORYSCALABLE"><\/a><span class="summary-name">MEMORYSCALABLE<\/span> = <code /;" a language:HTML
@@ -14843,8 +14960,8 @@
MPIU_BOOL src/sys/objects/init.c /^MPI_Datatype MPIU_BOOL;$/;" v language:C typeref:typename:MPI_Datatype
MPIU_COLORING_VALUE include/petscis.h /^#define MPIU_COLORING_VALUE /;" d language:C++
MPIU_COMPLEX include/petscmath.h /^ #define MPIU_COMPLEX /;" d language:C++
-MPIU_C_COMPLEX include/petscmath.h /^ #define MPIU_C_COMPLEX /;" d language:C++
-MPIU_C_DOUBLE_COMPLEX include/petscmath.h /^ #define MPIU_C_DOUBLE_COMPLEX /;" d language:C++
+MPIU_C_COMPLEX include/petscmath.h /^ #define MPIU_C_COMPLEX MPI_C_COMPLEX PETSC_DEPRECATED_MACRO("GCC warning \\"MPIU_C_COMP/;" d language:C++
+MPIU_C_DOUBLE_COMPLEX include/petscmath.h /^ #define MPIU_C_DOUBLE_COMPLEX MPI_C_DOUBLE_COMPLEX PETSC_DEPRECATED_MACRO("GCC warning \\"MPIU/;" d language:C++
MPIU_ENUM src/sys/objects/init.c /^MPI_Datatype MPIU_ENUM;$/;" v language:C typeref:typename:MPI_Datatype
MPIU_FORTRANADDR include/petscsys.h /^PETSC_EXTERN MPI_Datatype MPIU_FORTRANADDR;$/;" v language:C++ typeref:typename:PETSC_EXTERN MPI_Datatype
MPIU_FORTRANADDR src/sys/objects/init.c /^MPI_Datatype MPIU_FORTRANADDR;$/;" v language:C typeref:typename:MPI_Datatype
@@ -14854,6 +14971,7 @@
MPIU_File_write_all src/sys/fileio/sysio.c /^PetscErrorCode MPIU_File_write_all(MPI_File fd, void *data, PetscMPIInt cnt, MPI_Datatype dtype,/;" f language:C typeref:typename:PetscErrorCode
MPIU_File_write_at src/sys/fileio/sysio.c /^PetscErrorCode MPIU_File_write_at(MPI_File fd, MPI_Offset off, void *data, PetscMPIInt cnt, MPI_/;" f language:C typeref:typename:PetscErrorCode
MPIU_File_write_at_all src/sys/fileio/sysio.c /^PetscErrorCode MPIU_File_write_at_all(MPI_File fd, MPI_Offset off, void *data, PetscMPIInt cnt, /;" f language:C typeref:typename:PetscErrorCode
+MPIU_INT include/petscsys.h /^ #define MPIU_INT MPIU_INT6/;" d language:C++
MPIU_INT include/petscsys.h /^ #define MPIU_INT /;" d language:C++
MPIU_INT64 include/petscsystypes.h /^ #define MPIU_INT64 /;" d language:C++
MPIU_Iallgather include/petsc/private/sfimpl.h /^ #define MPIU_Iallgather(/;" d language:C++
@@ -14891,7 +15009,7 @@
MPIU_PETSCLOGDOUBLE include/petscsys.h /^#define MPIU_PETSCLOGDOUBLE /;" d language:C++
MPIU_REAL include/petscmath.h /^ #define MPIU_REAL /;" d language:C++
MPIU_REAL_INT src/sys/objects/init.c /^MPI_Datatype MPIU_REAL_INT = 0;$/;" v language:C typeref:typename:MPI_Datatype
-MPIU_REPLACE include/petscsf.h /^#define MPIU_REPLACE /;" d language:C++
+MPIU_REPLACE include/petscsf.h /^#define MPIU_REPLACE MPI_REPLACE PETSC_DEPRECATED_MACRO("GCC warning \\"MPIU_REPLACE /;" d language:C++
MPIU_Recv include/petsc/private/mpiutils.h /^ #define MPIU_Recv(/;" d language:C++
MPIU_Recv include/petsc/private/mpiutils.h /^static inline PetscMPIInt MPIU_Recv(void *buf, PetscInt count, MPI_Datatype datatype, PetscMPIIn/;" f language:C++ typeref:typename:PetscMPIInt
MPIU_Recv_init include/petsc/private/mpiutils.h /^ #define MPIU_Recv_init(/;" d language:C++
@@ -14921,7 +15039,7 @@
MPIU___FLOAT128 src/sys/objects/init.c /^MPI_Datatype MPIU___FLOAT128 = 0;$/;" v language:C typeref:typename:MPI_Datatype
MPIU___FP16 include/petsc/mpiuni/mpi.h /^MPIUni_PETSC_EXTERN MPI_Datatype MPIU___FP16;$/;" v language:C++ typeref:typename:MPIUni_PETSC_EXTERN MPI_Datatype
MPIU___FP16 src/sys/objects/init.c /^MPI_Datatype MPIU___FP16 = 0;$/;" v language:C typeref:typename:MPI_Datatype
-MPIUni_Abort include/petsc/mpiuni/mpi.h /^#define MPIUni_Abort /;" d language:C++
+MPIUni_Abort include/petsc/mpiuni/mpi.h /^#define MPIUni_Abort Petsc_MPIUni_Abort$/;" d language:C++
MPIUni_Abort src/sys/mpiuni/mpi.c /^int MPIUni_Abort(MPI_Comm comm, int errorcode)$/;" f language:C typeref:typename:int
MPIUni_PETSC_DLLEXPORT include/petsc/mpiuni/mpi.h /^ #define MPIUni_PETSC_DLLEXPORT /;" d language:C++
MPIUni_PETSC_DLLEXPORT include/petsc/mpiuni/mpi.h /^ #define MPIUni_PETSC_DLLEXPORT$/;" d language:C++
@@ -14936,34 +15054,34 @@
MPI_2INT include/petsc/mpiuni/mpi.h /^#define MPI_2INT /;" d language:C++
MPI_4INT include/petscmath.h /^PETSC_EXTERN MPI_Datatype MPI_4INT;$/;" v language:C++ typeref:typename:PETSC_EXTERN MPI_Datatype
MPI_4INT src/sys/objects/init.c /^MPI_Datatype MPI_4INT = 0;$/;" v language:C typeref:typename:MPI_Datatype
-MPI_ABORT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ABORT /;" d language:C++
-MPI_ADDRESS include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ADDRESS /;" d language:C++
+MPI_ABORT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ABORT PETSC_MPI_ABORT$/;" d language:C++
+MPI_ADDRESS include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ADDRESS PETSC_MPI_ADDRESS$/;" d language:C++
MPI_AINT include/petsc/mpiuni/mpi.h /^#define MPI_AINT /;" d language:C++
-MPI_ALLGATHER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLGATHER /;" d language:C++
-MPI_ALLGATHERV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLGATHERV /;" d language:C++
-MPI_ALLREDUCE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLREDUCE /;" d language:C++
-MPI_ALLTOALLV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLTOALLV /;" d language:C++
+MPI_ALLGATHER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLGATHER PETSC_MPI_ALLGATHER$/;" d language:C++
+MPI_ALLGATHERV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLGATHERV PETSC_MPI_ALLGATHERV$/;" d language:C++
+MPI_ALLREDUCE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLREDUCE PETSC_MPI_ALLREDUCE$/;" d language:C++
+MPI_ALLTOALLV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ALLTOALLV PETSC_MPI_ALLTOALLV$/;" d language:C++
MPI_ANY_SOURCE include/petsc/mpiuni/mpi.h /^#define MPI_ANY_SOURCE /;" d language:C++
MPI_ANY_TAG include/petsc/mpiuni/mpi.h /^#define MPI_ANY_TAG /;" d language:C++
-MPI_Abort include/petsc/mpiuni/mpi.h /^#define MPI_Abort /;" d language:C++
+MPI_Abort include/petsc/mpiuni/mpi.h /^#define MPI_Abort Petsc_MPI_Abort$/;" d language:C++
MPI_Abort include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Abort /;" d language:C++
MPI_Abort src/sys/mpiuni/mpi.c /^int MPI_Abort(MPI_Comm comm, int errorcode)$/;" f language:C typeref:typename:int
-MPI_Add_error_class include/petsc/mpiuni/mpi.h /^#define MPI_Add_error_class /;" d language:C++
+MPI_Add_error_class include/petsc/mpiuni/mpi.h /^#define MPI_Add_error_class Petsc_MPI_Add_error_class$/;" d language:C++
MPI_Add_error_class src/sys/mpiuni/mpi.c /^int MPI_Add_error_class(int *cl)$/;" f language:C typeref:typename:int
-MPI_Add_error_code include/petsc/mpiuni/mpi.h /^#define MPI_Add_error_code /;" d language:C++
+MPI_Add_error_code include/petsc/mpiuni/mpi.h /^#define MPI_Add_error_code Petsc_MPI_Add_error_code$/;" d language:C++
MPI_Add_error_code src/sys/mpiuni/mpi.c /^int MPI_Add_error_code(int cl, int *co)$/;" f language:C typeref:typename:int
MPI_Address include/petsc/mpiuni/mpi.h /^#define MPI_Address(/;" d language:C++
MPI_Address include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Address /;" d language:C++
MPI_Aint include/petsc/mpiuni/mpi.h /^typedef ptrdiff_t MPI_Aint;$/;" t language:C++ typeref:typename:ptrdiff_t
MPI_Allgather include/petsc/mpiuni/mpi.h /^#define MPI_Allgather(/;" d language:C++
MPI_Allgather include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Allgather /;" d language:C++
-MPI_Allgather include/petsclog.h /^ #define MPI_Allgather(/;" d language:C++
+MPI_Allgather include/petsclog.h /^ #define MPI_Allgather(sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, comm) ((pe/;" d language:C++
MPI_Allgatherv include/petsc/mpiuni/mpi.h /^#define MPI_Allgatherv(/;" d language:C++
MPI_Allgatherv include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Allgatherv /;" d language:C++
MPI_Allgatherv include/petsclog.h /^ #define MPI_Allgatherv(/;" d language:C++
MPI_Allreduce include/petsc/mpiuni/mpi.h /^#define MPI_Allreduce(/;" d language:C++
MPI_Allreduce include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Allreduce /;" d language:C++
-MPI_Allreduce include/petsclog.h /^ #define MPI_Allreduce(/;" d language:C++
+MPI_Allreduce include/petsclog.h /^ #define MPI_Allreduce(sendbuf, recvbuf, count, datatype, op, comm) (petsc_allreduce_ct += Pe/;" d language:C++
MPI_Alltoall include/petsc/mpiuni/mpi.h /^#define MPI_Alltoall(/;" d language:C++
MPI_Alltoall include/petsclog.h /^ #define MPI_Alltoall(/;" d language:C++
MPI_Alltoallv include/petsc/mpiuni/mpi.h /^#define MPI_Alltoallv(/;" d language:C++
@@ -14971,15 +15089,15 @@
MPI_Alltoallv include/petsclog.h /^ #define MPI_Alltoallv(/;" d language:C++
MPI_Alltoallw include/petsc/mpiuni/mpi.h /^#define MPI_Alltoallw(/;" d language:C++
MPI_Attr src/sys/mpiuni/mpi.c /^} MPI_Attr;$/;" t language:C typeref:struct:__anona00dc1c20108 file:
-MPI_Attr_delete include/petsc/mpiuni/mpi.h /^#define MPI_Attr_delete /;" d language:C++
+MPI_Attr_delete include/petsc/mpiuni/mpi.h /^#define MPI_Attr_delete Petsc_MPI_Attr_delete$/;" d language:C++
MPI_Attr_dereference_keyval src/sys/mpiuni/mpi.c /^static int MPI_Attr_dereference_keyval(int keyval)$/;" f language:C typeref:typename:int file:
-MPI_Attr_get include/petsc/mpiuni/mpi.h /^#define MPI_Attr_get /;" d language:C++
+MPI_Attr_get include/petsc/mpiuni/mpi.h /^#define MPI_Attr_get Petsc_MPI_Attr_get$/;" d language:C++
MPI_Attr_keyval src/sys/mpiuni/mpi.c /^} MPI_Attr_keyval;$/;" t language:C typeref:struct:__anona00dc1c20208 file:
-MPI_Attr_put include/petsc/mpiuni/mpi.h /^#define MPI_Attr_put /;" d language:C++
+MPI_Attr_put include/petsc/mpiuni/mpi.h /^#define MPI_Attr_put Petsc_MPI_Attr_put$/;" d language:C++
MPI_Attr_reference_keyval src/sys/mpiuni/mpi.c /^static int MPI_Attr_reference_keyval(int keyval)$/;" f language:C typeref:typename:int file:
MPI_BAND include/petsc/mpiuni/mpi.h /^#define MPI_BAND /;" d language:C++
-MPI_BARRIER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_BARRIER /;" d language:C++
-MPI_BCAST include/petsc/mpiuni/mpiunifdef.h /^#define MPI_BCAST /;" d language:C++
+MPI_BARRIER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_BARRIER PETSC_MPI_BARRIER$/;" d language:C++
+MPI_BCAST include/petsc/mpiuni/mpiunifdef.h /^#define MPI_BCAST PETSC_MPI_BCAST$/;" d language:C++
MPI_BOR include/petsc/mpiuni/mpi.h /^#define MPI_BOR /;" d language:C++
MPI_BOTTOM include/petsc/mpiuni/mpi.h /^#define MPI_BOTTOM /;" d language:C++
MPI_BXOR include/petsc/mpiuni/mpi.h /^#define MPI_BXOR /;" d language:C++
@@ -14988,12 +15106,12 @@
MPI_Barrier include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Barrier /;" d language:C++
MPI_Bcast include/petsc/mpiuni/mpi.h /^#define MPI_Bcast(/;" d language:C++
MPI_Bcast include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Bcast /;" d language:C++
-MPI_Bcast include/petsclog.h /^ #define MPI_Bcast(/;" d language:C++
+MPI_Bcast include/petsclog.h /^ #define MPI_Bcast(buffer, count, datatype, root, comm) ((petsc_allreduce_ct += PetscMPIParal/;" d language:C++
MPI_Bsend include/petsc/mpiuni/mpi.h /^#define MPI_Bsend(/;" d language:C++
MPI_Bsend_init include/petsc/mpiuni/mpi.h /^#define MPI_Bsend_init(/;" d language:C++
MPI_Buffer_attach include/petsc/mpiuni/mpi.h /^#define MPI_Buffer_attach(/;" d language:C++
MPI_Buffer_detach include/petsc/mpiuni/mpi.h /^#define MPI_Buffer_detach(/;" d language:C++
-MPI_CANCEL include/petsc/mpiuni/mpiunifdef.h /^#define MPI_CANCEL /;" d language:C++
+MPI_CANCEL include/petsc/mpiuni/mpiunifdef.h /^#define MPI_CANCEL PETSC_MPI_CANCEL$/;" d language:C++
MPI_CHAR include/petsc/mpiuni/mpi.h /^#define MPI_CHAR /;" d language:C++
MPI_COMBINER_CONTIGUOUS include/petsc/mpiuni/mpi.h /^#define MPI_COMBINER_CONTIGUOUS /;" d language:C++
MPI_COMBINER_CONTIGUOUS src/vec/is/sf/interface/sftype.c /^ #define MPI_COMBINER_CONTIGUOUS /;" d language:C file:
@@ -15001,17 +15119,17 @@
MPI_COMBINER_DUP src/vec/is/sf/interface/sftype.c /^ #define MPI_COMBINER_DUP /;" d language:C file:
MPI_COMBINER_NAMED include/petsc/mpiuni/mpi.h /^#define MPI_COMBINER_NAMED /;" d language:C++
MPI_COMBINER_NAMED src/vec/is/sf/interface/sftype.c /^ #define MPI_COMBINER_NAMED /;" d language:C file:
-MPI_COMM_CREATE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_CREATE /;" d language:C++
-MPI_COMM_DUP include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_DUP /;" d language:C++
-MPI_COMM_FREE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_FREE /;" d language:C++
-MPI_COMM_GROUP include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_GROUP /;" d language:C++
+MPI_COMM_CREATE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_CREATE PETSC_MPI_COMM_CREATE$/;" d language:C++
+MPI_COMM_DUP include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_DUP PETSC_MPI_COMM_DUP$/;" d language:C++
+MPI_COMM_FREE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_FREE PETSC_MPI_COMM_FREE$/;" d language:C++
+MPI_COMM_GROUP include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_GROUP PETSC_MPI_COMM_GROUP$/;" d language:C++
MPI_COMM_NULL include/petsc/mpiuni/mpi.h /^#define MPI_COMM_NULL /;" d language:C++
MPI_COMM_NULL_COPY_FN include/petsc/mpiuni/mpi.h /^#define MPI_COMM_NULL_COPY_FN /;" d language:C++
MPI_COMM_NULL_DELETE_FN include/petsc/mpiuni/mpi.h /^#define MPI_COMM_NULL_DELETE_FN /;" d language:C++
-MPI_COMM_RANK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_RANK /;" d language:C++
+MPI_COMM_RANK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_RANK PETSC_MPI_COMM_RANK$/;" d language:C++
MPI_COMM_SELF include/petsc/mpiuni/mpi.h /^#define MPI_COMM_SELF /;" d language:C++
-MPI_COMM_SIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_SIZE /;" d language:C++
-MPI_COMM_SPLIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_SPLIT /;" d language:C++
+MPI_COMM_SIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_SIZE PETSC_MPI_COMM_SIZE$/;" d language:C++
+MPI_COMM_SPLIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_COMM_SPLIT PETSC_MPI_COMM_SPLIT$/;" d language:C++
MPI_COMM_TYPE_SHARED include/petsc/mpiuni/mpi.h /^#define MPI_COMM_TYPE_SHARED /;" d language:C++
MPI_COMM_WORLD include/petsc/mpiuni/mpi.h /^#define MPI_COMM_WORLD /;" d language:C++
MPI_COMPLEX include/petsc/mpiuni/mpi.h /^#define MPI_COMPLEX /;" d language:C++
@@ -15035,7 +15153,7 @@
MPI_Comm_c2f include/petsc/mpiuni/mpi.h /^#define MPI_Comm_c2f(/;" d language:C++
MPI_Comm_compare include/petsc/mpiuni/mpi.h /^#define MPI_Comm_compare(/;" d language:C++
MPI_Comm_copy_attr_function include/petsc/mpiuni/mpi.h /^#define MPI_Comm_copy_attr_function /;" d language:C++
-MPI_Comm_create include/petsc/mpiuni/mpi.h /^#define MPI_Comm_create /;" d language:C++
+MPI_Comm_create include/petsc/mpiuni/mpi.h /^#define MPI_Comm_create Petsc_MPI_Comm_create$/;" d language:C++
MPI_Comm_create include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_create /;" d language:C++
MPI_Comm_create src/sys/mpiuni/mpi.c /^int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm)$/;" f language:C typeref:typename:int
MPI_Comm_create_keyval include/petsc/mpiuni/mpi.h /^#define MPI_Comm_create_keyval /;" d language:C++
@@ -15043,31 +15161,31 @@
MPI_Comm_delete_attr include/petsc/mpiuni/mpi.h /^#define MPI_Comm_delete_attr /;" d language:C++
MPI_Comm_delete_attr src/sys/mpiuni/mpi.c /^int MPI_Comm_delete_attr(MPI_Comm comm, int keyval)$/;" f language:C typeref:typename:int
MPI_Comm_delete_attr_function include/petsc/mpiuni/mpi.h /^#define MPI_Comm_delete_attr_function /;" d language:C++
-MPI_Comm_dup include/petsc/mpiuni/mpi.h /^#define MPI_Comm_dup /;" d language:C++
+MPI_Comm_dup include/petsc/mpiuni/mpi.h /^#define MPI_Comm_dup Petsc_MPI_Comm_dup$/;" d language:C++
MPI_Comm_dup include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_dup /;" d language:C++
MPI_Comm_dup src/sys/mpiuni/mpi.c /^int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *out)$/;" f language:C typeref:typename:int
MPI_Comm_f2c include/petsc/mpiuni/mpi.h /^#define MPI_Comm_f2c(/;" d language:C++
-MPI_Comm_free include/petsc/mpiuni/mpi.h /^#define MPI_Comm_free /;" d language:C++
+MPI_Comm_free include/petsc/mpiuni/mpi.h /^#define MPI_Comm_free Petsc_MPI_Comm_free$/;" d language:C++
MPI_Comm_free include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_free /;" d language:C++
MPI_Comm_free src/sys/mpiuni/mpi.c /^int MPI_Comm_free(MPI_Comm *comm)$/;" f language:C typeref:typename:int
MPI_Comm_free_keyval include/petsc/mpiuni/mpi.h /^#define MPI_Comm_free_keyval /;" d language:C++
MPI_Comm_free_keyval src/sys/mpiuni/mpi.c /^int MPI_Comm_free_keyval(int *keyval)$/;" f language:C typeref:typename:int
MPI_Comm_get_attr include/petsc/mpiuni/mpi.h /^#define MPI_Comm_get_attr /;" d language:C++
MPI_Comm_get_attr src/sys/mpiuni/mpi.c /^int MPI_Comm_get_attr(MPI_Comm comm, int keyval, void *attribute_val, int *flag)$/;" f language:C typeref:typename:int
-MPI_Comm_get_name include/petsc/mpiuni/mpi.h /^#define MPI_Comm_get_name /;" d language:C++
+MPI_Comm_get_name include/petsc/mpiuni/mpi.h /^#define MPI_Comm_get_name Petsc_MPI_Comm_get_name$/;" d language:C++
MPI_Comm_get_name src/sys/mpiuni/mpi.c /^int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen)$/;" f language:C typeref:typename:int
MPI_Comm_group include/petsc/mpiuni/mpi.h /^#define MPI_Comm_group(/;" d language:C++
MPI_Comm_group include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_group /;" d language:C++
-MPI_Comm_rank include/petsc/mpiuni/mpi.h /^#define MPI_Comm_rank /;" d language:C++
+MPI_Comm_rank include/petsc/mpiuni/mpi.h /^#define MPI_Comm_rank Petsc_MPI_Comm_rank$/;" d language:C++
MPI_Comm_rank include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_rank /;" d language:C++
MPI_Comm_rank src/sys/mpiuni/mpi.c /^int MPI_Comm_rank(MPI_Comm comm, int *rank)$/;" f language:C typeref:typename:int
MPI_Comm_remote_group include/petsc/mpiuni/mpi.h /^#define MPI_Comm_remote_group(/;" d language:C++
MPI_Comm_remote_size include/petsc/mpiuni/mpi.h /^#define MPI_Comm_remote_size(/;" d language:C++
MPI_Comm_set_attr include/petsc/mpiuni/mpi.h /^#define MPI_Comm_set_attr /;" d language:C++
MPI_Comm_set_attr src/sys/mpiuni/mpi.c /^int MPI_Comm_set_attr(MPI_Comm comm, int keyval, void *attribute_val)$/;" f language:C typeref:typename:int
-MPI_Comm_set_name include/petsc/mpiuni/mpi.h /^#define MPI_Comm_set_name /;" d language:C++
+MPI_Comm_set_name include/petsc/mpiuni/mpi.h /^#define MPI_Comm_set_name Petsc_MPI_Comm_set_name$/;" d language:C++
MPI_Comm_set_name src/sys/mpiuni/mpi.c /^int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name)$/;" f language:C typeref:typename:int
-MPI_Comm_size include/petsc/mpiuni/mpi.h /^#define MPI_Comm_size /;" d language:C++
+MPI_Comm_size include/petsc/mpiuni/mpi.h /^#define MPI_Comm_size Petsc_MPI_Comm_size$/;" d language:C++
MPI_Comm_size include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Comm_size /;" d language:C++
MPI_Comm_size src/sys/mpiuni/mpi.c /^int MPI_Comm_size(MPI_Comm comm, int *size)$/;" f language:C typeref:typename:int
MPI_Comm_split include/petsc/mpiuni/mpi.h /^#define MPI_Comm_split(/;" d language:C++
@@ -15093,7 +15211,7 @@
MPI_ERR_NOSUPPORT include/petsc/mpiuni/mpi.h /^#define MPI_ERR_NOSUPPORT /;" d language:C++
MPI_ERR_OTHER include/petsc/mpiuni/mpi.h /^#define MPI_ERR_OTHER /;" d language:C++
MPI_ERR_UNKNOWN include/petsc/mpiuni/mpi.h /^#define MPI_ERR_UNKNOWN /;" d language:C++
-MPI_EXSCAN include/petsc/mpiuni/mpiunifdef.h /^#define MPI_EXSCAN /;" d language:C++
+MPI_EXSCAN include/petsc/mpiuni/mpiunifdef.h /^#define MPI_EXSCAN PETSC_MPI_EXSCAN$/;" d language:C++
MPI_Errhandler include/petsc/mpiuni/mpi.h /^typedef int MPI_Errhandler;$/;" t language:C++ typeref:typename:int
MPI_Errhandler_create include/petsc/mpiuni/mpi.h /^#define MPI_Errhandler_create(/;" d language:C++
MPI_Errhandler_free include/petsc/mpiuni/mpi.h /^#define MPI_Errhandler_free(/;" d language:C++
@@ -15105,7 +15223,7 @@
MPI_Exscan include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Exscan /;" d language:C++
MPI_FAILURE src/sys/mpiuni/mpi.c /^#define MPI_FAILURE /;" d language:C file:
MPI_FILE_NULL include/petsc/mpiuni/mpi.h /^#define MPI_FILE_NULL /;" d language:C++
-MPI_FINALIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_FINALIZE /;" d language:C++
+MPI_FINALIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_FINALIZE PETSC_MPI_FINALIZE$/;" d language:C++
MPI_FLOAT include/petsc/mpiuni/mpi.h /^#define MPI_FLOAT /;" d language:C++
MPI_FLOAT_INT include/petsc/mpiuni/mpi.h /^#define MPI_FLOAT_INT /;" d language:C++
MPI_File include/petsc/mpiuni/mpi.h /^typedef int MPI_File;$/;" t language:C++ typeref:typename:int
@@ -15118,15 +15236,15 @@
MPI_File_write_all include/petsc/mpiuni/mpi.h /^#define MPI_File_write_all(/;" d language:C++
MPI_File_write_at include/petsc/mpiuni/mpi.h /^#define MPI_File_write_at(/;" d language:C++
MPI_File_write_at_all include/petsc/mpiuni/mpi.h /^#define MPI_File_write_at_all(/;" d language:C++
-MPI_Finalize include/petsc/mpiuni/mpi.h /^#define MPI_Finalize /;" d language:C++
+MPI_Finalize include/petsc/mpiuni/mpi.h /^#define MPI_Finalize Petsc_MPI_Finalize$/;" d language:C++
MPI_Finalize include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Finalize /;" d language:C++
MPI_Finalize src/sys/mpiuni/mpi.c /^int MPI_Finalize(void)$/;" f language:C typeref:typename:int
-MPI_Finalized include/petsc/mpiuni/mpi.h /^#define MPI_Finalized /;" d language:C++
+MPI_Finalized include/petsc/mpiuni/mpi.h /^#define MPI_Finalized Petsc_MPI_Finalized$/;" d language:C++
MPI_Finalized src/sys/mpiuni/mpi.c /^int MPI_Finalized(int *flag)$/;" f language:C typeref:typename:int
MPI_Fint include/petsc/mpiuni/mpi.h /^typedef int MPI_Fint;$/;" t language:C++ typeref:typename:int
-MPI_GATHER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GATHER /;" d language:C++
-MPI_GET_COUNT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GET_COUNT /;" d language:C++
-MPI_GET_PROCESSOR_NAME include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GET_PROCESSOR_NAME /;" d language:C++
+MPI_GATHER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GATHER PETSC_MPI_GATHER$/;" d language:C++
+MPI_GET_COUNT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GET_COUNT PETSC_MPI_GET_COUNT$/;" d language:C++
+MPI_GET_PROCESSOR_NAME include/petsc/mpiuni/mpiunifdef.h /^#define MPI_GET_PROCESSOR_NAME PETSC_MPI_GET_PROCESSOR_NAME$/;" d language:C++
MPI_GROUP_EMPTY include/petsc/mpiuni/mpi.h /^#define MPI_GROUP_EMPTY /;" d language:C++
MPI_GROUP_NULL include/petsc/mpiuni/mpi.h /^#define MPI_GROUP_NULL /;" d language:C++
MPI_Gather include/petsc/mpiuni/mpi.h /^#define MPI_Gather(/;" d language:C++
@@ -15162,8 +15280,8 @@
MPI_Handler_function include/petsc/mpiuni/mpi.h /^typedef void(MPI_Handler_function)(MPI_Comm *, int *, ...);$/;" t language:C++ typeref:typename:void ()(MPI_Comm *,int *,...)
MPI_IDENT include/petsc/mpiuni/mpi.h /^#define MPI_IDENT /;" d language:C++
MPI_INFO_NULL include/petsc/mpiuni/mpi.h /^#define MPI_INFO_NULL /;" d language:C++
-MPI_INIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_INIT /;" d language:C++
-MPI_INITIALIZED include/petsc/mpiuni/mpiunifdef.h /^#define MPI_INITIALIZED /;" d language:C++
+MPI_INIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_INIT PETSC_MPI_INIT$/;" d language:C++
+MPI_INITIALIZED include/petsc/mpiuni/mpiunifdef.h /^#define MPI_INITIALIZED PETSC_MPI_INITIALIZED$/;" d language:C++
MPI_INT include/petsc/mpiuni/mpi.h /^#define MPI_INT /;" d language:C++
MPI_INT16_T include/petsc/mpiuni/mpi.h /^#define MPI_INT16_T /;" d language:C++
MPI_INT32_T include/petsc/mpiuni/mpi.h /^#define MPI_INT32_T /;" d language:C++
@@ -15172,9 +15290,9 @@
MPI_INTEGER8 include/petsc/mpiuni/mpi.h /^#define MPI_INTEGER8 /;" d language:C++
MPI_IN_PLACE include/petsc/mpiuni/mpi.h /^#define MPI_IN_PLACE /;" d language:C++
MPI_IN_PLACE src/sys/mpiuni/f90-mod/mpiunimod.F90 /^ integer MPI_IN_PLACE$/;" v language:Fortran module:mpiuni
-MPI_IPROBE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_IPROBE /;" d language:C++
-MPI_IRECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_IRECV /;" d language:C++
-MPI_ISEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ISEND /;" d language:C++
+MPI_IPROBE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_IPROBE PETSC_MPI_IPROBE$/;" d language:C++
+MPI_IRECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_IRECV PETSC_MPI_IRECV$/;" d language:C++
+MPI_ISEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_ISEND PETSC_MPI_ISEND$/;" d language:C++
MPI_Iallgather include/petsclog.h /^ #define MPI_Iallgather(/;" d language:C++
MPI_Iallgatherv include/petsclog.h /^ #define MPI_Iallgatherv(/;" d language:C++
MPI_Iallreduce include/petsc/mpiuni/mpi.h /^#define MPI_Iallreduce(/;" d language:C++
@@ -15184,12 +15302,12 @@
MPI_Igather include/petsclog.h /^ #define MPI_Igather(/;" d language:C++
MPI_Igatherv include/petsclog.h /^ #define MPI_Igatherv(/;" d language:C++
MPI_Info include/petsc/mpiuni/mpi.h /^typedef int MPI_Info;$/;" t language:C++ typeref:typename:int
-MPI_Init include/petsc/mpiuni/mpi.h /^#define MPI_Init /;" d language:C++
+MPI_Init include/petsc/mpiuni/mpi.h /^#define MPI_Init Petsc_MPI_Init$/;" d language:C++
MPI_Init include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Init /;" d language:C++
MPI_Init src/sys/mpiuni/mpi.c /^int MPI_Init(int *argc, char ***argv)$/;" f language:C typeref:typename:int
-MPI_Init_thread include/petsc/mpiuni/mpi.h /^#define MPI_Init_thread /;" d language:C++
+MPI_Init_thread include/petsc/mpiuni/mpi.h /^#define MPI_Init_thread Petsc_MPI_Init_thread$/;" d language:C++
MPI_Init_thread src/sys/mpiuni/mpi.c /^int MPI_Init_thread(int *argc, char ***argv, int required, int *provided)$/;" f language:C typeref:typename:int
-MPI_Initialized include/petsc/mpiuni/mpi.h /^#define MPI_Initialized /;" d language:C++
+MPI_Initialized include/petsc/mpiuni/mpi.h /^#define MPI_Initialized Petsc_MPI_Initialized$/;" d language:C++
MPI_Initialized include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Initialized /;" d language:C++
MPI_Initialized src/sys/mpiuni/mpi.c /^int MPI_Initialized(int *flag)$/;" f language:C typeref:typename:int
MPI_Intercomm_create include/petsc/mpiuni/mpi.h /^#define MPI_Intercomm_create(/;" d language:C++
@@ -15198,19 +15316,19 @@
MPI_Iprobe include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Iprobe /;" d language:C++
MPI_Irecv include/petsc/mpiuni/mpi.h /^#define MPI_Irecv(/;" d language:C++
MPI_Irecv include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Irecv /;" d language:C++
-MPI_Irecv include/petsclog.h /^ #define MPI_Irecv(/;" d language:C++
-MPI_Irecv_c include/petsclog.h /^ #define MPI_Irecv_c(/;" d language:C++
+MPI_Irecv include/petsclog.h /^ #define MPI_Irecv(buf, count, datatype, source, tag, comm, request) ((petsc_irecv_ct++, 0) |/;" d language:C++
+MPI_Irecv_c include/petsclog.h /^ #define MPI_Irecv_c(buf, count, datatype, source, tag, comm, request) ((petsc_irecv_ct++, 0)/;" d language:C++
MPI_Irsend include/petsc/mpiuni/mpi.h /^#define MPI_Irsend(/;" d language:C++
MPI_Iscatter include/petsclog.h /^ #define MPI_Iscatter(/;" d language:C++
MPI_Iscatterv include/petsclog.h /^ #define MPI_Iscatterv(/;" d language:C++
MPI_Isend include/petsc/mpiuni/mpi.h /^#define MPI_Isend(/;" d language:C++
MPI_Isend include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Isend /;" d language:C++
-MPI_Isend include/petsclog.h /^ #define MPI_Isend(/;" d language:C++
-MPI_Isend_c include/petsclog.h /^ #define MPI_Isend_c(/;" d language:C++
+MPI_Isend include/petsclog.h /^ #define MPI_Isend(buf, count, datatype, dest, tag, comm, request) ((petsc_isend_ct++, 0) || /;" d language:C++
+MPI_Isend_c include/petsclog.h /^ #define MPI_Isend_c(buf, count, datatype, dest, tag, comm, request) ((petsc_isend_ct++, 0) |/;" d language:C++
MPI_Issend include/petsc/mpiuni/mpi.h /^#define MPI_Issend(/;" d language:C++
MPI_KEYVAL_INVALID include/petsc/mpiuni/mpi.h /^#define MPI_KEYVAL_INVALID /;" d language:C++
-MPI_Keyval_create include/petsc/mpiuni/mpi.h /^#define MPI_Keyval_create /;" d language:C++
-MPI_Keyval_free include/petsc/mpiuni/mpi.h /^#define MPI_Keyval_free /;" d language:C++
+MPI_Keyval_create include/petsc/mpiuni/mpi.h /^#define MPI_Keyval_create Petsc_MPI_Keyval_create$/;" d language:C++
+MPI_Keyval_free include/petsc/mpiuni/mpi.h /^#define MPI_Keyval_free Petsc_MPI_Keyval_free$/;" d language:C++
MPI_LAND include/petsc/mpiuni/mpi.h /^#define MPI_LAND /;" d language:C++
MPI_LONG include/petsc/mpiuni/mpi.h /^#define MPI_LONG /;" d language:C++
MPI_LONG_DOUBLE include/petsc/mpiuni/mpi.h /^#define MPI_LONG_DOUBLE /;" d language:C++
@@ -15240,10 +15358,10 @@
MPI_Op_create include/petsc/mpiuni/mpi.h /^#define MPI_Op_create(/;" d language:C++
MPI_Op_f2c include/petsc/mpiuni/mpi.h /^#define MPI_Op_f2c(/;" d language:C++
MPI_Op_free include/petsc/mpiuni/mpi.h /^#define MPI_Op_free(/;" d language:C++
-MPI_PACK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PACK /;" d language:C++
+MPI_PACK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PACK PETSC_MPI_PACK$/;" d language:C++
MPI_PACKED include/petsc/mpiuni/mpi.h /^#define MPI_PACKED /;" d language:C++
-MPI_PACK_SIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PACK_SIZE /;" d language:C++
-MPI_PROBE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PROBE /;" d language:C++
+MPI_PACK_SIZE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PACK_SIZE PETSC_MPI_PACK_SIZE$/;" d language:C++
+MPI_PROBE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_PROBE PETSC_MPI_PROBE$/;" d language:C++
MPI_PROC_NULL include/petsc/mpiuni/mpi.h /^#define MPI_PROC_NULL /;" d language:C++
MPI_PROD include/petsc/mpiuni/mpi.h /^#define MPI_PROD /;" d language:C++
MPI_Pack include/petsc/mpiuni/mpi.h /^#define MPI_Pack(/;" d language:C++
@@ -15253,39 +15371,39 @@
MPI_Pcontrol include/petsc/mpiuni/mpi.h /^#define MPI_Pcontrol(/;" d language:C++
MPI_Probe include/petsc/mpiuni/mpi.h /^#define MPI_Probe(/;" d language:C++
MPI_Probe include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Probe /;" d language:C++
-MPI_Query_thread include/petsc/mpiuni/mpi.h /^#define MPI_Query_thread /;" d language:C++
+MPI_Query_thread include/petsc/mpiuni/mpi.h /^#define MPI_Query_thread Petsc_MPI_Query_thread$/;" d language:C++
MPI_Query_thread src/sys/mpiuni/mpi.c /^int MPI_Query_thread(int *provided)$/;" f language:C typeref:typename:int
-MPI_RECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_RECV /;" d language:C++
-MPI_REDUCE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REDUCE /;" d language:C++
-MPI_REDUCE_SCATTER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REDUCE_SCATTER /;" d language:C++
+MPI_RECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_RECV PETSC_MPI_RECV$/;" d language:C++
+MPI_REDUCE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REDUCE PETSC_MPI_REDUCE$/;" d language:C++
+MPI_REDUCE_SCATTER include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REDUCE_SCATTER PETSC_MPI_REDUCE_SCATTER$/;" d language:C++
MPI_REPLACE include/petsc/mpiuni/mpi.h /^#define MPI_REPLACE /;" d language:C++
-MPI_REQUEST_FREE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REQUEST_FREE /;" d language:C++
+MPI_REQUEST_FREE include/petsc/mpiuni/mpiunifdef.h /^#define MPI_REQUEST_FREE PETSC_MPI_REQUEST_FREE$/;" d language:C++
MPI_REQUEST_NULL include/petsc/mpiuni/mpi.h /^#define MPI_REQUEST_NULL /;" d language:C++
MPI_Recv include/petsc/mpiuni/mpi.h /^#define MPI_Recv(/;" d language:C++
MPI_Recv include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Recv /;" d language:C++
-MPI_Recv include/petsclog.h /^ #define MPI_Recv(/;" d language:C++
-MPI_Recv_c include/petsclog.h /^ #define MPI_Recv_c(/;" d language:C++
+MPI_Recv include/petsclog.h /^ #define MPI_Recv(buf, count, datatype, source, tag, comm, status) ((petsc_recv_ct++, 0) || P/;" d language:C++
+MPI_Recv_c include/petsclog.h /^ #define MPI_Recv_c(buf, count, datatype, source, tag, comm, status) ((petsc_recv_ct++, 0) ||/;" d language:C++
MPI_Recv_init include/petsc/mpiuni/mpi.h /^#define MPI_Recv_init(/;" d language:C++
MPI_Reduce include/petsc/mpiuni/mpi.h /^#define MPI_Reduce(/;" d language:C++
MPI_Reduce include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Reduce /;" d language:C++
MPI_Reduce_scatter include/petsc/mpiuni/mpi.h /^#define MPI_Reduce_scatter(/;" d language:C++
MPI_Reduce_scatter include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Reduce_scatter /;" d language:C++
-MPI_Reduce_scatter_block include/petsclog.h /^ #define MPI_Reduce_scatter_block(/;" d language:C++
+MPI_Reduce_scatter_block include/petsclog.h /^ #define MPI_Reduce_scatter_block(sendbuf, recvbuf, recvcount, datatype, op, comm) ((petsc_al/;" d language:C++
MPI_Register_datarep include/petsc/mpiuni/mpi.h /^#define MPI_Register_datarep(/;" d language:C++
MPI_Request include/petsc/mpiuni/mpi.h /^typedef int MPI_Request;$/;" t language:C++ typeref:typename:int
MPI_Request_free include/petsc/mpiuni/mpi.h /^#define MPI_Request_free(/;" d language:C++
MPI_Request_free include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Request_free /;" d language:C++
MPI_Rsend include/petsc/mpiuni/mpi.h /^#define MPI_Rsend(/;" d language:C++
MPI_Rsend_init include/petsc/mpiuni/mpi.h /^#define MPI_Rsend_init(/;" d language:C++
-MPI_SCAN include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SCAN /;" d language:C++
-MPI_SEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SEND /;" d language:C++
-MPI_SENDRECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SENDRECV /;" d language:C++
+MPI_SCAN include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SCAN PETSC_MPI_SCAN$/;" d language:C++
+MPI_SEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SEND PETSC_MPI_SEND$/;" d language:C++
+MPI_SENDRECV include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SENDRECV PETSC_MPI_SENDRECV$/;" d language:C++
MPI_SHORT include/petsc/mpiuni/mpi.h /^#define MPI_SHORT /;" d language:C++
MPI_SHORT_INT include/petsc/mpiuni/mpi.h /^#define MPI_SHORT_INT /;" d language:C++
MPI_SIGNED_CHAR include/petsc/mpiuni/mpi.h /^#define MPI_SIGNED_CHAR /;" d language:C++
MPI_SIMILAR include/petsc/mpiuni/mpi.h /^#define MPI_SIMILAR /;" d language:C++
MPI_SOURCE include/petsc/mpiuni/mpi.h /^ int MPI_SOURCE, MPI_TAG, MPI_ERROR;$/;" m language:C++ struct:__anon413a31c30108 typeref:typename:int
-MPI_SSEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SSEND /;" d language:C++
+MPI_SSEND include/petsc/mpiuni/mpiunifdef.h /^#define MPI_SSEND PETSC_MPI_SSEND$/;" d language:C++
MPI_STATUSES_IGNORE include/petsc/mpiuni/mpi.h /^#define MPI_STATUSES_IGNORE /;" d language:C++
MPI_STATUS_IGNORE include/petsc/mpiuni/mpi.h /^#define MPI_STATUS_IGNORE /;" d language:C++
MPI_SUCCESS include/petsc/mpiuni/mpi.h /^#define MPI_SUCCESS /;" d language:C++
@@ -15301,8 +15419,8 @@
MPI_Scatterv include/petsclog.h /^ #define MPI_Scatterv(/;" d language:C++
MPI_Send include/petsc/mpiuni/mpi.h /^#define MPI_Send(/;" d language:C++
MPI_Send include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Send /;" d language:C++
-MPI_Send include/petsclog.h /^ #define MPI_Send(/;" d language:C++
-MPI_Send_c include/petsclog.h /^ #define MPI_Send_c(/;" d language:C++
+MPI_Send include/petsclog.h /^ #define MPI_Send(buf, count, datatype, dest, tag, comm) ((petsc_send_ct++, 0) || PetscMPITyp/;" d language:C++
+MPI_Send_c include/petsclog.h /^ #define MPI_Send_c(buf, count, datatype, dest, tag, comm) ((petsc_send_ct++, 0) || PetscMPIT/;" d language:C++
MPI_Send_init include/petsc/mpiuni/mpi.h /^#define MPI_Send_init(/;" d language:C++
MPI_Sendrecv include/petsc/mpiuni/mpi.h /^#define MPI_Sendrecv(/;" d language:C++
MPI_Sendrecv include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Sendrecv /;" d language:C++
@@ -15321,13 +15439,13 @@
MPI_Status include/petsc/mpiuni/mpi.h /^} MPI_Status;$/;" t language:C++ typeref:struct:__anon413a31c30108
MPI_TAG include/petsc/mpiuni/mpi.h /^ int MPI_SOURCE, MPI_TAG, MPI_ERROR;$/;" m language:C++ struct:__anon413a31c30108 typeref:typename:int
MPI_TAG_UB include/petsc/mpiuni/mpi.h /^#define MPI_TAG_UB /;" d language:C++
-MPI_TEST include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TEST /;" d language:C++
+MPI_TEST include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TEST PETSC_MPI_TEST$/;" d language:C++
MPI_THREAD_FUNNELED include/petsc/mpiuni/mpi.h /^#define MPI_THREAD_FUNNELED /;" d language:C++
MPI_THREAD_MULTIPLE include/petsc/mpiuni/mpi.h /^#define MPI_THREAD_MULTIPLE /;" d language:C++
MPI_THREAD_SERIALIZED include/petsc/mpiuni/mpi.h /^#define MPI_THREAD_SERIALIZED /;" d language:C++
MPI_THREAD_SINGLE include/petsc/mpiuni/mpi.h /^#define MPI_THREAD_SINGLE /;" d language:C++
-MPI_TYPE_COMMIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TYPE_COMMIT /;" d language:C++
-MPI_TYPE_STRUCT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TYPE_STRUCT /;" d language:C++
+MPI_TYPE_COMMIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TYPE_COMMIT PETSC_MPI_TYPE_COMMIT$/;" d language:C++
+MPI_TYPE_STRUCT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_TYPE_STRUCT PETSC_MPI_TYPE_STRUCT$/;" d language:C++
MPI_Test include/petsc/mpiuni/mpi.h /^#define MPI_Test(/;" d language:C++
MPI_Test include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Test /;" d language:C++
MPI_Test_cancelled include/petsc/mpiuni/mpi.h /^#define MPI_Test_cancelled(/;" d language:C++
@@ -15347,9 +15465,9 @@
MPI_Type_f2c include/petsc/mpiuni/mpi.h /^#define MPI_Type_f2c(/;" d language:C++
MPI_Type_free include/petsc/mpiuni/mpi.h /^#define MPI_Type_free(/;" d language:C++
MPI_Type_free include/petscsys.h /^ #define MPI_Type_free(/;" d language:C++
-MPI_Type_get_contents include/petsc/mpiuni/mpi.h /^#define MPI_Type_get_contents /;" d language:C++
+MPI_Type_get_contents include/petsc/mpiuni/mpi.h /^#define MPI_Type_get_contents Petsc_MPI_Type_get_contents$/;" d language:C++
MPI_Type_get_contents src/sys/mpiuni/mpi.c /^int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_da/;" f language:C typeref:typename:int
-MPI_Type_get_envelope include/petsc/mpiuni/mpi.h /^#define MPI_Type_get_envelope /;" d language:C++
+MPI_Type_get_envelope include/petsc/mpiuni/mpi.h /^#define MPI_Type_get_envelope Petsc_MPI_Type_get_envelope$/;" d language:C++
MPI_Type_get_envelope src/sys/mpiuni/mpi.c /^int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num/;" f language:C typeref:typename:int
MPI_Type_get_extent include/petsc/mpiuni/mpi.h /^#define MPI_Type_get_extent(/;" d language:C++
MPI_Type_hindexed include/petsc/mpiuni/mpi.h /^#define MPI_Type_hindexed(/;" d language:C++
@@ -15363,7 +15481,7 @@
MPI_Type_vector include/petsc/mpiuni/mpi.h /^#define MPI_Type_vector(/;" d language:C++
MPI_UNDEFINED include/petsc/mpiuni/mpi.h /^#define MPI_UNDEFINED /;" d language:C++
MPI_UNEQUAL include/petsc/mpiuni/mpi.h /^#define MPI_UNEQUAL /;" d language:C++
-MPI_UNPACK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_UNPACK /;" d language:C++
+MPI_UNPACK include/petsc/mpiuni/mpiunifdef.h /^#define MPI_UNPACK PETSC_MPI_UNPACK$/;" d language:C++
MPI_UNSIGNED include/petsc/mpiuni/mpi.h /^#define MPI_UNSIGNED /;" d language:C++
MPI_UNSIGNED_CHAR include/petsc/mpiuni/mpi.h /^#define MPI_UNSIGNED_CHAR /;" d language:C++
MPI_UNSIGNED_LONG include/petsc/mpiuni/mpi.h /^#define MPI_UNSIGNED_LONG /;" d language:C++
@@ -15372,26 +15490,28 @@
MPI_Unpack include/petsc/mpiuni/mpi.h /^#define MPI_Unpack(/;" d language:C++
MPI_Unpack include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Unpack /;" d language:C++
MPI_User_function include/petsc/mpiuni/mpi.h /^typedef void(MPI_User_function)(void *, void *, int *, MPI_Datatype *);$/;" t language:C++ typeref:typename:void ()(void *,void *,int *,MPI_Datatype *)
-MPI_WAIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAIT /;" d language:C++
-MPI_WAITALL include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAITALL /;" d language:C++
-MPI_WAITANY include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAITANY /;" d language:C++
-MPI_WTIME include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WTIME /;" d language:C++
+MPI_WAIT include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAIT PETSC_MPI_WAIT$/;" d language:C++
+MPI_WAITALL include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAITALL PETSC_MPI_WAITALL$/;" d language:C++
+MPI_WAITANY include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WAITANY PETSC_MPI_WAITANY$/;" d language:C++
+MPI_WTIME include/petsc/mpiuni/mpiunifdef.h /^#define MPI_WTIME PETSC_MPI_WTIME$/;" d language:C++
MPI_Wait include/petsc/mpiuni/mpi.h /^#define MPI_Wait(/;" d language:C++
MPI_Wait include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Wait /;" d language:C++
-MPI_Wait include/petsclog.h /^ #define MPI_Wait(/;" d language:C++
+MPI_Wait include/petsclog.h /^ #define MPI_Wait(request, status) ((petsc_wait_ct++, petsc_sum_of_waits_ct++, 0) || MPI_Wait/;" d language:C++
MPI_Waitall include/petsc/mpiuni/mpi.h /^#define MPI_Waitall(/;" d language:C++
MPI_Waitall include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Waitall /;" d language:C++
-MPI_Waitall include/petsclog.h /^ #define MPI_Waitall(/;" d language:C++
+MPI_Waitall include/petsclog.h /^ #define MPI_Waitall(count, array_of_requests, array_of_statuses) ((petsc_wait_all_ct++, pets/;" d language:C++
MPI_Waitany include/petsc/mpiuni/mpi.h /^#define MPI_Waitany(/;" d language:C++
MPI_Waitany include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Waitany /;" d language:C++
-MPI_Waitany include/petsclog.h /^ #define MPI_Waitany(/;" d language:C++
+MPI_Waitany include/petsclog.h /^ #define MPI_Waitany(a, b, c, d) ((petsc_wait_any_ct++, petsc_sum_of_waits_ct++, 0) || MPI_Wa/;" d language:C++
MPI_Waitsome include/petsc/mpiuni/mpi.h /^#define MPI_Waitsome(/;" d language:C++
MPI_Wtick include/petsc/mpiuni/mpi.h /^#define MPI_Wtick(/;" d language:C++
-MPI_Wtime include/petsc/mpiuni/mpi.h /^#define MPI_Wtime /;" d language:C++
+MPI_Wtime include/petsc/mpiuni/mpi.h /^#define MPI_Wtime Petsc_MPI_Wtime$/;" d language:C++
MPI_Wtime include/petsc/mpiuni/mpiunifdef.h /^#define MPI_Wtime /;" d language:C++
MPI_Wtime src/benchmarks/makefile /^MPI_Wtime: MPI_Wtime.o $/;" t language:Make
MPI_Wtime src/sys/mpiuni/mpitime.c /^double MPI_Wtime(void)$/;" f language:C typeref:typename:double
-MPI_sizeof include/petsc/mpiuni/mpi.h /^ #define MPI_sizeof(/;" d language:C++
+MPI_sizeof include/petsc/mpiuni/mpi.h /^ #define MPI_sizeof(datatype) ((datatype == MPIU___FLOAT128) ? (int)(2 * sizeof(double)) : MPI_/;" d language:C++
+MPI_sizeof include/petsc/mpiuni/mpi.h /^ #define MPI_sizeof(datatype) ((datatype == MPIU___FP16) ? (int)(2 * sizeof(char)) : MPI_sizeof/;" d language:C++
+MPI_sizeof include/petsc/mpiuni/mpi.h /^ #define MPI_sizeof(datatype) (MPI_sizeof_/;" d language:C++
MPI_sizeof_default include/petsc/mpiuni/mpi.h /^#define MPI_sizeof_default(/;" d language:C++
MPI_was_finalized src/sys/mpiuni/mpi.c /^static int MPI_was_finalized = 0;$/;" v language:C typeref:typename:int file:
MPI_was_initialized src/sys/mpiuni/mpi.c /^static int MPI_was_initialized = 0;$/;" v language:C typeref:typename:int file:
@@ -15501,7 +15621,7 @@
MarkFromID_IncompatibleModes_UpdateLastWrite src/sys/objects/device/interface/mark_dcontext.cxx /^static PetscErrorCode MarkFromID_IncompatibleModes_UpdateLastWrite(MarkedObjectMap::mapped_type /;" f language:C++ typeref:typename:PetscErrorCode file:
MarkedObjectMap src/sys/objects/device/interface/mark_dcontext.cxx /^class MarkedObjectMap : public Petsc::RegisterFinalizeable<MarkedObjectMap> {$/;" c language:C++ file:
MassFractionToMoleFraction src/ts/tutorials/extchem.c /^PetscErrorCode MassFractionToMoleFraction(User user, Vec massf, Vec *molef)$/;" f language:C typeref:typename:PetscErrorCode
-Mat include/petsc/finclude/petscmat.h /^#define Mat /;" d language:C++
+Mat include/petsc/finclude/petscmat.h /^#define Mat type(tMat)/;" d language:C++
Mat include/petscmat.h /^typedef struct _p_Mat *Mat;$/;" t language:C++ typeref:struct:_p_Mat *
MatADAComputeDiagonal src/tao/matrix/adamat.c /^static PetscErrorCode MatADAComputeDiagonal(Mat mat)$/;" f language:C typeref:typename:PetscErrorCode file:
MatAIJGetLocalMat src/mat/impls/aij/mpi/mpiaij.c /^PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)$/;" f language:C typeref:typename:PetscErrorCode
@@ -16101,7 +16221,7 @@
MatCreateSeqSELL src/mat/impls/sell/seq/sell.c /^PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt maxallocrow, con/;" f language:C typeref:typename:PetscErrorCode
MatCreateSeqSubMatrixWithRows_Private src/mat/impls/aij/mpi/mpiaij.c /^PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)$/;" f language:C typeref:typename:PetscErrorCode
MatCreateShell src/mat/impls/shell/shell.c /^PetscErrorCode MatCreateShell(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, voi/;" f language:C typeref:typename:PetscErrorCode
-MatCreateShell src/mat/tutorials/ex6f.F90 /^ INTERFACE MatCreateShell$/;" i language:Fortran module:solver_context_interfaces
+MatCreateShell src/mat/tutorials/ex6f.F90 /^ INTERFACE MatCreateShell$/;" i language:Fortran
MatCreateSubMatrices src/mat/interface/matrix.c /^PetscErrorCode MatCreateSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatRe/;" f language:C typeref:typename:PetscErrorCode
MatCreateSubMatricesMPI src/mat/interface/matrix.c /^PetscErrorCode MatCreateSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], Ma/;" f language:C typeref:typename:PetscErrorCode
MatCreateSubMatricesMPI_MPIAIJ src/mat/impls/aij/mpi/mpiov.c /^PetscErrorCode MatCreateSubMatricesMPI_MPIAIJ(Mat C, PetscInt ismax, const IS isrow[], const IS /;" f language:C typeref:typename:PetscErrorCode
@@ -16231,7 +16351,6 @@
MatCreate_SeqSBAIJ src/mat/impls/sbaij/seq/sbaij.c /^PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B)$/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
MatCreate_SeqSELL src/mat/impls/sell/seq/sell.c /^PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)$/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
MatCreate_Shell src/mat/impls/shell/shell.c /^PETSC_EXTERN PetscErrorCode MatCreate_Shell(Mat A)$/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
-MatCtx src/mat/tutorials/ex6f.F90 /^ TYPE :: MatCtx$/;" t language:Fortran module:solver_context
MatDFischer src/tao/util/tao_util.c /^PetscErrorCode MatDFischer(Mat jac, Vec X, Vec Con, Vec XL, Vec XU, Vec T1, Vec T2, Vec Da, Vec /;" f language:C typeref:typename:PetscErrorCode
MatDSFischer src/tao/util/tao_util.c /^PetscErrorCode MatDSFischer(Mat jac, Vec X, Vec Con, Vec XL, Vec XU, PetscReal mu, Vec T1, Vec T/;" f language:C typeref:typename:PetscErrorCode
MatDeltaFwdSensip src/ts/impls/implicit/theta/theta.c /^ Mat MatDeltaFwdSensip; \/* Increment of the forward sensitivity at stage *\/$/;" m language:C struct:__anon653d3e9c0108 typeref:typename:Mat file:
@@ -16589,7 +16708,7 @@
MatEqual_SeqDense src/mat/impls/dense/seq/dense.c /^static PetscErrorCode MatEqual_SeqDense(Mat A1, Mat A2, PetscBool *flg)$/;" f language:C typeref:typename:PetscErrorCode file:
MatEqual_SeqSBAIJ src/mat/impls/sbaij/seq/sbaij2.c /^PetscErrorCode MatEqual_SeqSBAIJ(Mat A, Mat B, PetscBool *flg)$/;" f language:C typeref:typename:PetscErrorCode
MatEqual_SeqSELL src/mat/impls/sell/seq/sell.c /^PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)$/;" f language:C typeref:typename:PetscErrorCode
-MatFDColoring include/petsc/finclude/petscmat.h /^#define MatFDColoring /;" d language:C++
+MatFDColoring include/petsc/finclude/petscmat.h /^#define MatFDColoring type(tMatFDColoring)/;" d language:C++
MatFDColoring include/petscmat.h /^typedef struct _p_MatFDColoring *MatFDColoring;$/;" t language:C++ typeref:struct:_p_MatFDColoring *
MatFDColoringApply src/mat/matfd/fdmatrix.c /^PetscErrorCode MatFDColoringApply(Mat J, MatFDColoring coloring, Vec x1, void *sctx)$/;" f language:C typeref:typename:PetscErrorCode
MatFDColoringApply_AIJ src/mat/impls/aij/mpi/fdmpiaij.c /^PetscErrorCode MatFDColoringApply_AIJ(Mat J, MatFDColoring coloring, Vec x1, void *sctx)$/;" f language:C typeref:typename:PetscErrorCode
@@ -18102,7 +18221,7 @@
MatNormalGetMat_NormalHermitian src/mat/impls/normal/normmh.c /^PetscErrorCode MatNormalGetMat_NormalHermitian(Mat A, Mat *M)$/;" f language:C typeref:typename:PetscErrorCode
MatNormalHermitianGetMat src/mat/impls/normal/normmh.c /^PetscErrorCode MatNormalHermitianGetMat(Mat A, Mat *M)$/;" f language:C typeref:typename:PetscErrorCode
MatNormal_DenseDestroy src/mat/impls/normal/normm.c /^PetscErrorCode MatNormal_DenseDestroy(void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
-MatNullSpace include/petsc/finclude/petscmat.h /^#define MatNullSpace /;" d language:C++
+MatNullSpace include/petsc/finclude/petscmat.h /^#define MatNullSpace type(tMatNullSpace)/;" d language:C++
MatNullSpace include/petscmat.h /^typedef struct _p_MatNullSpace *MatNullSpace;$/;" t language:C++ typeref:struct:_p_MatNullSpace *
MatNullSpaceCreate src/mat/interface/matnull.c /^PetscErrorCode MatNullSpaceCreate(MPI_Comm comm, PetscBool has_cnst, PetscInt n, const Vec vecs[/;" f language:C typeref:typename:PetscErrorCode
MatNullSpaceCreateRigidBody src/mat/interface/matnull.c /^PetscErrorCode MatNullSpaceCreateRigidBody(Vec coords, MatNullSpace *sp)$/;" f language:C typeref:typename:PetscErrorCode
@@ -19112,7 +19231,7 @@
MatShellCtx src/snes/tests/ex69.c /^} MatShellCtx;$/;" t language:C typeref:struct:__anon3b2e7f630308 file:
MatShellCtx src/ts/tests/ex30.c /^} MatShellCtx;$/;" t language:C typeref:struct:__anon7ce906250108 file:
MatShellGetContext src/mat/impls/shell/shell.c /^PetscErrorCode MatShellGetContext(Mat mat, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
-MatShellGetContext src/mat/tutorials/ex6f.F90 /^ INTERFACE MatShellGetContext$/;" i language:Fortran module:solver_context_interfaces
+MatShellGetContext src/mat/tutorials/ex6f.F90 /^ INTERFACE MatShellGetContext$/;" i language:Fortran
MatShellGetContext_Shell src/mat/impls/shell/shell.c /^static PetscErrorCode MatShellGetContext_Shell(Mat mat, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
MatShellGetOperation src/mat/impls/shell/shell.c /^PetscErrorCode MatShellGetOperation(Mat mat, MatOperation op, void (**g)(void))$/;" f language:C typeref:typename:PetscErrorCode
MatShellGetOperation_Shell src/mat/impls/shell/shell.c /^static PetscErrorCode MatShellGetOperation_Shell(Mat mat, MatOperation op, void (**f)(void))$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -19126,7 +19245,7 @@
MatShellPreZeroLeft src/mat/impls/shell/shell.c /^static PetscErrorCode MatShellPreZeroLeft(Mat A, Vec x, Vec *xx)$/;" f language:C typeref:typename:PetscErrorCode file:
MatShellPreZeroRight src/mat/impls/shell/shell.c /^static PetscErrorCode MatShellPreZeroRight(Mat A, Vec x, Vec *xx)$/;" f language:C typeref:typename:PetscErrorCode file:
MatShellSetContext src/mat/impls/shell/shell.c /^PetscErrorCode MatShellSetContext(Mat mat, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
-MatShellSetContext src/mat/tutorials/ex6f.F90 /^ INTERFACE MatShellSetContext$/;" i language:Fortran module:solver_context_interfaces
+MatShellSetContext src/mat/tutorials/ex6f.F90 /^ INTERFACE MatShellSetContext$/;" i language:Fortran
MatShellSetContextDestroy src/mat/impls/shell/shell.c /^PetscErrorCode MatShellSetContextDestroy(Mat mat, PetscErrorCode (*f)(void *))$/;" f language:C typeref:typename:PetscErrorCode
MatShellSetContextDestroy_Shell src/mat/impls/shell/shell.c /^PetscErrorCode MatShellSetContextDestroy_Shell(Mat mat, PetscErrorCode (*f)(void *))$/;" f language:C typeref:typename:PetscErrorCode
MatShellSetContext_Shell src/mat/impls/shell/shell.c /^static PetscErrorCode MatShellSetContext_Shell(Mat mat, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -20591,7 +20710,7 @@
OutputBIN src/ts/tutorials/ex11_sa.c /^static PetscErrorCode OutputBIN(DM dm, const char *filename, PetscViewer *viewer)$/;" f language:C typeref:typename:PetscErrorCode file:
OutputVTK src/ts/tutorials/ex11.c /^static PetscErrorCode OutputVTK(DM dm, const char *filename, PetscViewer *viewer)$/;" f language:C typeref:typename:PetscErrorCode file:
OutputVTK src/ts/tutorials/ex11_sa.c /^static PetscErrorCode OutputVTK(DM dm, const char *filename, PetscViewer *viewer)$/;" f language:C typeref:typename:PetscErrorCode file:
-Overview — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/overview.html /^ <title>Overview — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Overview — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/overview.html /^ <title>Overview — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
Overview? src/binding/petsc4py/docs/usrman/overview.html /^<h1>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">?<\/a><\/h/;" h language:HTML
P include/petsc/private/dmdaimpl.h /^ PetscInt M, N, P; \/* array dimensions *\/$/;" m language:C++ struct:__anona748a20e0108 typeref:typename:PetscInt
P include/petsc/private/petscelemental.h /^ El::DistPermutation *P, *Q;$/;" m language:C++ struct:__anon04791b9c0108 typeref:typename:El::DistPermutation *
@@ -20672,7 +20791,7 @@
PBLASgemv_ include/petsc/private/petscscalapack.h /^#define PBLASgemv_ /;" d language:C++
PBLAStran_ include/petsc/private/petscscalapack.h /^ #define PBLAStran_ /;" d language:C++
PBiCGStab src/ksp/pc/impls/amgx/amgx.cxx /^ PBiCGStab,$/;" e language:C++ enum:AmgXSmoother file:
-PC include/petsc/finclude/petscpc.h /^#define PC /;" d language:C++
+PC include/petsc/finclude/petscpc.h /^#define PC type(tPC)/;" d language:C++
PC include/petscpctypes.h /^typedef struct _p_PC *PC;$/;" t language:C++ typeref:struct:_p_PC *
PCAMGX include/petsc/finclude/petscpc.h /^#define PCAMGX /;" d language:C++
PCAMGX include/petscpctypes.h /^#define PCAMGX /;" d language:C++
@@ -23390,7 +23509,7 @@
PETSC_FALSE include/petscsystypes.h /^ PETSC_FALSE,$/;" e language:C++ enum:__anon6bcfb2210203
PETSC_FCOPY_H src/sys/utils/ftn-kernels/fcopy.h /^#define PETSC_FCOPY_H$/;" d language:C++
PETSC_FGMRESIMPL_H src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define PETSC_FGMRESIMPL_H$/;" d language:C++
-PETSC_FIRST_ARG include/petscmacros.h /^#define PETSC_FIRST_ARG(/;" d language:C++
+PETSC_FIRST_ARG include/petscmacros.h /^#define PETSC_FIRST_ARG(args) /;" d language:C++
PETSC_FIRST_ARG_ include/petscmacros.h /^#define PETSC_FIRST_ARG_(/;" d language:C++
PETSC_FLOAT include/petscsystypes.h /^ PETSC_FLOAT = 5,$/;" e language:C++ enum:__anon6bcfb2210503
PETSC_FLOAT_SIZE src/sys/objects/ptype.c /^ PETSC_FLOAT_SIZE = sizeof(float),$/;" e language:C enum:__anonbdf514a60103 file:
@@ -23415,7 +23534,7 @@
PETSC_FP_TRAP_ON include/petscerror.h /^#define PETSC_FP_TRAP_ON /;" d language:C++
PETSC_FREESPACE_H src/mat/utils/freespace.h /^#define PETSC_FREESPACE_H$/;" d language:C++
PETSC_FUNCTION include/petscsystypes.h /^ PETSC_FUNCTION = 12,$/;" e language:C++ enum:__anon6bcfb2210503
-PETSC_FUNCTION_NAME include/petscmacros.h /^ #define PETSC_FUNCTION_NAME /;" d language:C++
+PETSC_FUNCTION_NAME include/petscmacros.h /^ #define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_/;" d language:C++
PETSC_GMRESIMPL_H src/ksp/ksp/impls/gmres/gmresimpl.h /^#define PETSC_GMRESIMPL_H$/;" d language:C++
PETSC_GMSH_EXE src/dm/impls/plex/tests/ex99.c /^ #define PETSC_GMSH_EXE /;" d language:C file:
PETSC_GOOGLE_API_KEY src/sys/webclient/google.c /^#define PETSC_GOOGLE_API_KEY /;" d language:C file:
@@ -23469,7 +23588,7 @@
PETSC_INFO_COMM_ALL include/petsclog.h /^ PETSC_INFO_COMM_ALL = -1,$/;" e language:C++ enum:__anone6530a8f0103
PETSC_INFO_COMM_NO_SELF include/petsclog.h /^ PETSC_INFO_COMM_NO_SELF = 0,$/;" e language:C++ enum:__anone6530a8f0103
PETSC_INFO_COMM_ONLY_SELF include/petsclog.h /^ PETSC_INFO_COMM_ONLY_SELF = 1$/;" e language:C++ enum:__anone6530a8f0103
-PETSC_INLINE include/petscmacros.h /^#define PETSC_INLINE /;" d language:C++
+PETSC_INLINE include/petscmacros.h /^#define PETSC_INLINE PETSC_DEPRECATED_MACRO("GCC warning \\"PETSC_INLINE /;" d language:C++
PETSC_INT include/petscsystypes.h /^ PETSC_INT = 16,$/;" e language:C++ enum:__anon6bcfb2210503
PETSC_INT64 include/petscsystypes.h /^ PETSC_INT64 = 17,$/;" e language:C++ enum:__anon6bcfb2210503
PETSC_INT64_SIZE src/sys/objects/ptype.c /^ PETSC_INT64_SIZE = sizeof(PetscInt64),$/;" e language:C enum:__anonbdf514a60103 file:
@@ -23580,11 +23699,11 @@
PETSC_P4EST_ASSERT src/dm/impls/forest/p4est/petsc_p4est_package.h /^ #define PETSC_P4EST_ASSERT(/;" d language:C++
PETSC_P4EST_PACKAGE_H src/dm/impls/forest/p4est/petsc_p4est_package.h /^#define PETSC_P4EST_PACKAGE_H$/;" d language:C++
PETSC_PACKIMPL_H src/dm/impls/composite/packimpl.h /^#define PETSC_PACKIMPL_H$/;" d language:C++
-PETSC_PASTE2 include/petscblaslapack_mangle.h /^#define PETSC_PASTE2(/;" d language:C++
+PETSC_PASTE2 include/petscblaslapack_mangle.h /^#define PETSC_PASTE2(a, b) PETSC_PASTE2_/;" d language:C++
PETSC_PASTE2_ include/petscblaslapack_mangle.h /^#define PETSC_PASTE2_(/;" d language:C++
-PETSC_PASTE3 include/petscblaslapack_mangle.h /^#define PETSC_PASTE3(/;" d language:C++
+PETSC_PASTE3 include/petscblaslapack_mangle.h /^#define PETSC_PASTE3(a, b, c) PETSC_PASTE3_/;" d language:C++
PETSC_PASTE3_ include/petscblaslapack_mangle.h /^#define PETSC_PASTE3_(/;" d language:C++
-PETSC_PASTE4 include/petsc/private/petscscalapack.h /^#define PETSC_PASTE4(/;" d language:C++
+PETSC_PASTE4 include/petsc/private/petscscalapack.h /^#define PETSC_PASTE4(a, b, c, d) PETSC_PASTE4_/;" d language:C++
PETSC_PASTE4_ include/petsc/private/petscscalapack.h /^#define PETSC_PASTE4_(/;" d language:C++
PETSC_PCBDDCIMPL_H include/petsc/private/pcbddcimpl.h /^#define PETSC_PCBDDCIMPL_H$/;" d language:C++
PETSC_PCBDDCPRIVATEIMPL_H include/petsc/private/pcbddcprivateimpl.h /^#define PETSC_PCBDDCPRIVATEIMPL_H$/;" d language:C++
@@ -23613,7 +23732,7 @@
PETSC_RESTRICT include/petscmacros.h /^ #define PETSC_RESTRICT /;" d language:C++
PETSC_RESTRICT src/snes/tutorials/ex48.c /^ #define PETSC_RESTRICT$/;" d language:C file:
PETSC_REST_ARG include/petscmacros.h /^#define PETSC_REST_ARG(/;" d language:C++
-PETSC_REST_HELPER include/petscmacros.h /^#define PETSC_REST_HELPER(/;" d language:C++
+PETSC_REST_HELPER include/petscmacros.h /^#define PETSC_REST_HELPER(qty, ...) PETSC_REST_HELPER2/;" d language:C++
PETSC_REST_HELPER2 include/petscmacros.h /^#define PETSC_REST_HELPER2(/;" d language:C++
PETSC_REST_HELPER_ONE include/petscmacros.h /^#define PETSC_REST_HELPER_ONE(/;" d language:C++
PETSC_REST_HELPER_TWOORMORE include/petscmacros.h /^#define PETSC_REST_HELPER_TWOORMORE(/;" d language:C++
@@ -23677,7 +23796,7 @@
PETSC_SR_REDUCE_MIN include/petsc/private/petscimpl.h /^ PETSC_SR_REDUCE_MIN = 2$/;" e language:C++ enum:__anonbd63bb570603
PETSC_SR_REDUCE_SUM include/petsc/private/petscimpl.h /^ PETSC_SR_REDUCE_SUM = 0,$/;" e language:C++ enum:__anonbd63bb570603
PETSC_STATIC_ARRAY_LENGTH include/petscmacros.h /^#define PETSC_STATIC_ARRAY_LENGTH(/;" d language:C++
-PETSC_STATIC_INLINE include/petscmacros.h /^#define PETSC_STATIC_INLINE /;" d language:C++
+PETSC_STATIC_INLINE include/petscmacros.h /^#define PETSC_STATIC_INLINE PETSC_DEPRECATED_MACRO("GCC warning \\"PETSC_STATIC_INLINE /;" d language:C++
PETSC_STDERR include/petscsys.h /^PETSC_EXTERN FILE *PETSC_STDERR;$/;" v language:C++ typeref:typename:PETSC_EXTERN FILE *
PETSC_STDERR src/sys/fileio/mprint.c /^FILE *PETSC_STDERR = NULL;$/;" v language:C typeref:typename:FILE *
PETSC_STDOUT include/petscsys.h /^PETSC_EXTERN FILE *PETSC_STDOUT;$/;" v language:C++ typeref:typename:PETSC_EXTERN FILE *
@@ -23723,7 +23842,7 @@
PETSC_USING_HCC include/petscdevice_hip.h /^ #define PETSC_USING_HCC /;" d language:C++
PETSC_USING_NVCC include/petscdevice_cuda.h /^ #define PETSC_USING_NVCC /;" d language:C++
PETSC_VECNESTIMPL_H src/vec/vec/impls/nest/vecnestimpl.h /^#define PETSC_VECNESTIMPL_H$/;" d language:C++
-PETSC_VERSION_ include/petscversion.h /^#define PETSC_VERSION_ /;" d language:C++
+PETSC_VERSION_ include/petscversion.h /^#define PETSC_VERSION_ PETSC_VERSION_E/;" d language:C++
PETSC_VERSION_DATE include/petscversion.h /^#define PETSC_VERSION_DATE /;" d language:C++
PETSC_VERSION_DATE_GIT include/petscversion.h /^#define PETSC_VERSION_DATE_GIT /;" d language:C++
PETSC_VERSION_EQ include/petscversion.h /^#define PETSC_VERSION_EQ(/;" d language:C++
@@ -23796,7 +23915,7 @@
PETSC_VIEWER_HDF5_VIZ include/petscviewer.h /^ PETSC_VIEWER_HDF5_VIZ,$/;" e language:C++ enum:__anon1c710a1f0203
PETSC_VIEWER_HDF5_XDMF include/petscviewer.h /^ PETSC_VIEWER_HDF5_XDMF,$/;" e language:C++ enum:__anon1c710a1f0203
PETSC_VIEWER_LOAD_BALANCE include/petscviewer.h /^ PETSC_VIEWER_LOAD_BALANCE,$/;" e language:C++ enum:__anon1c710a1f0203
-PETSC_VIEWER_MATHEMATICA_WORLD include/petscviewer.h /^#define PETSC_VIEWER_MATHEMATICA_WORLD /;" d language:C++
+PETSC_VIEWER_MATHEMATICA_WORLD include/petscviewer.h /^#define PETSC_VIEWER_MATHEMATICA_WORLD (PetscViewerInitializeMathematicaWorld_Private(), PETSC_V/;" d language:C++
PETSC_VIEWER_MATHEMATICA_WORLD_PRIVATE include/petscviewer.h /^PETSC_EXTERN PetscViewer PETSC_VIEWER_MATHEMATICA_WORLD_PRIVATE;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscViewer
PETSC_VIEWER_MATHEMATICA_WORLD_PRIVATE src/sys/classes/viewer/impls/mathematica/mathematica.c /^PetscViewer PETSC_VIEWER_MATHEMATICA_WORLD_PRIVATE = NULL;$/;" v language:C typeref:typename:PetscViewer
PETSC_VIEWER_MATLAB_ src/sys/classes/viewer/impls/matlab/vmatlab.c /^PetscViewer PETSC_VIEWER_MATLAB_(MPI_Comm comm)$/;" f language:C typeref:typename:PetscViewer
@@ -23874,7 +23993,7 @@
PETSc Linear Solver Selection share/petsc/saws/linearsolveroptions.html /^ <h1> PETSc Linear Solver Selection <\/h1>$/;" h language:HTML
PETSc Solver Selection share/petsc/saws/linearsolveroptions.html /^ <title>PETSc Solver Selection<\/title>$/;" j language:HTML
PETSc for Python src/binding/petsc4py/docs/apiref/frames.html /^ <title> PETSc for Python <\/title>$/;" j language:HTML
-PETSc for Python — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/manual.html /^ <title>PETSc for Python — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+PETSc for Python — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/manual.html /^ <title>PETSc for Python — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
PETSc for Python? src/binding/petsc4py/docs/usrman/manual.html /^<h1>PETSc for Python<a class="headerlink" href="#petsc-for-python" title="Permalink to this head/;" h language:HTML
PETScExample src/benchmarks/benchmarkExample.py /^class PETScExample(object):$/;" c language:Python
PETScParseFortranArgs_Private src/sys/objects/ftn-custom/zstart.c /^PetscErrorCode PETScParseFortranArgs_Private(int *argc,char ***argv)$/;" f language:C typeref:typename:PetscErrorCode
@@ -24426,7 +24545,7 @@
PetscCallHIPSPARSE include/petscdevice_hip.h /^ #define PetscCallHIPSPARSE(/;" d language:C++
PetscCallMKL src/mat/impls/baij/seq/baijmkl/baijmkl.h /^#define PetscCallMKL(/;" d language:C++
PetscCallMKLSparse src/mat/tests/ex237.c /^ #define PetscCallMKLSparse(/;" d language:C file:
-PetscCallMMG src/dm/impls/plex/adaptors/mmgcommon.h /^#define PetscCallMMG(/;" d language:C++
+PetscCallMMG src/dm/impls/plex/adaptors/mmgcommon.h /^#define PetscCallMMG(...) PetscCallMMG_/;" d language:C++
PetscCallMMG_NONSTANDARD src/dm/impls/plex/adaptors/mmgcommon.h /^#define PetscCallMMG_NONSTANDARD(/;" d language:C++
PetscCallMMG_Private src/dm/impls/plex/adaptors/mmgcommon.h /^#define PetscCallMMG_Private(/;" d language:C++
PetscCallMPI include/petsc/finclude/petscsys.h /^#define PetscCallMPI(/;" d language:C++
@@ -24437,7 +24556,7 @@
PetscCallPARMETIS src/mat/partition/impls/pmetis/pmetis.c /^#define PetscCallPARMETIS(/;" d language:C file:
PetscCallPARMETIS src/mat/tests/ex152.c /^#define PetscCallPARMETIS(/;" d language:C file:
PetscCallPTSCOTCH src/dm/partitioner/impls/ptscotch/partptscotch.c /^ #define PetscCallPTSCOTCH(/;" d language:C file:
-PetscCallParmetis src/mat/partition/impls/pmetis/pmetis.c /^#define PetscCallParmetis(/;" d language:C file:
+PetscCallParmetis src/mat/partition/impls/pmetis/pmetis.c /^#define PetscCallParmetis(func, args) PetscCallParmetis_/;" d language:C file:
PetscCallParmetis_ src/mat/partition/impls/pmetis/pmetis.c /^#define PetscCallParmetis_(/;" d language:C file:
PetscCallQ include/petsc/private/petscfptimpl.h /^#define PetscCallQ(/;" d language:C++
PetscCallSAWs include/petscviewersaws.h /^#define PetscCallSAWs(/;" d language:C++
@@ -24540,11 +24659,12 @@
PetscComplex include/petscsystypes.h /^typedef petsccomplexlib::complex<double> PetscComplex;$/;" t language:C++ typeref:typename:petsccomplexlib::complex<double>
PetscComplex include/petscsystypes.h /^typedef petsccomplexlib::complex<float> PetscComplex;$/;" t language:C++ typeref:typename:petsccomplexlib::complex<float>
PetscComposedQuantitiesDestroy src/sys/objects/destroy.c /^PetscErrorCode PetscComposedQuantitiesDestroy(PetscObject obj)$/;" f language:C typeref:typename:PetscErrorCode
-PetscConcat include/petscmacros.h /^#define PetscConcat(/;" d language:C++
+PetscConcat include/petscmacros.h /^#define PetscConcat(x, y) PetscConcat_/;" d language:C++
PetscConcat_ include/petscmacros.h /^#define PetscConcat_(/;" d language:C++
PetscConfig src/binding/petsc4py/conf/baseconf.py /^class PetscConfig:$/;" c language:Python
PetscConj include/petsc/finclude/petscsys.h /^#define PetscConj(/;" d language:C++
PetscConj include/petscmath.h /^ #define PetscConj(/;" d language:C++
+PetscConj include/petscmath.h /^ #define PetscConj(a) PetscConjC/;" d language:C++
PetscConjComplex include/petscmath.h /^ #define PetscConjComplex(/;" d language:C++
PetscConjComplex include/petscmath.h /^ #define PetscConjComplex(/;" d language:C++
PetscContainer include/petscsystypes.h /^typedef struct _p_PetscContainer *PetscContainer;$/;" t language:C++ typeref:struct:_p_PetscContainer *
@@ -24557,7 +24677,7 @@
PetscContainerUserDestroy_PetscFEGeom src/dm/dt/fe/tests/ex1.c /^static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
PetscContainerUserDestroy_PetscFEGeom src/dm/dt/fe/tests/ex2.c /^static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
PetscContainerUserDestroy_PetscFEGeom src/dm/impls/plex/plexfem.c /^static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)$/;" f language:C typeref:typename:PetscErrorCode file:
-PetscConvEst include/petsc/finclude/petscsnes.h /^#define PetscConvEst /;" d language:C++
+PetscConvEst include/petsc/finclude/petscsnes.h /^#define PetscConvEst type(tPetscConvEst)/;" d language:C++
PetscConvEst include/petscconvest.h /^typedef struct _p_PetscConvEst *PetscConvEst;$/;" t language:C++ typeref:struct:_p_PetscConvEst *
PetscConvEstComputeError src/snes/utils/convest.c /^PetscErrorCode PetscConvEstComputeError(PetscConvEst ce, PetscInt r, DM dm, Vec u, PetscReal err/;" f language:C typeref:typename:PetscErrorCode
PetscConvEstComputeErrorSNES_Private src/snes/utils/convest.c /^static PetscErrorCode PetscConvEstComputeErrorSNES_Private(PetscConvEst ce, PetscInt r, DM dm, V/;" f language:C typeref:typename:PetscErrorCode file:
@@ -24928,11 +25048,11 @@
PetscDefaultFPTrap src/sys/error/fp.c /^void PetscDefaultFPTrap(int sig, siginfo_t *scp, ucontext_t *uap)$/;" f language:C typeref:typename:void
PetscDefaultHipStream include/petscdevice_hip.h /^PETSC_EXTERN hipStream_t PetscDefaultHipStream; \/\/ The default stream used by PETSc$/;" v language:C++ typeref:typename:PETSC_EXTERN hipStream_t
PetscDefaultHipStream src/sys/objects/pinit.c /^hipStream_t PetscDefaultHipStream = NULL;$/;" v language:C typeref:typename:hipStream_t
-PetscDefined include/petscmacros.h /^ #define PetscDefined(/;" d language:C++
-PetscDefined_ include/petscmacros.h /^ #define PetscDefined_(/;" d language:C++
-PetscDefined__ include/petscmacros.h /^ #define PetscDefined__(/;" d language:C++
-PetscDefined__take_second include/petscmacros.h /^ #define PetscDefined__take_second(/;" d language:C++
-PetscDefined__take_second_expand include/petscmacros.h /^ #define PetscDefined__take_second_expand(/;" d language:C++
+PetscDefined include/petscmacros.h /^ #define PetscDefined(def) PetscDefined_/;" d language:C++
+PetscDefined_ include/petscmacros.h /^ #define PetscDefined_(value) PetscDefined__(PetscConcat_(Pets/;" d language:C++
+PetscDefined__ include/petscmacros.h /^ #define PetscDefined__(arg1_or_junk) PetscDefined__t/;" d language:C++
+PetscDefined__take_second include/petscmacros.h /^ #define PetscDefined__take_second(...) PetscDefined__take_second_/;" d language:C++
+PetscDefined__take_second_expand include/petscmacros.h /^ #define PetscDefined__take_second_expand(args) PetscDefined__take_second_expand/;" d language:C++
PetscDefined__take_second_expanded include/petscmacros.h /^ #define PetscDefined__take_second_expanded(/;" d language:C++
PetscDefined_arg_ include/petscmacros.h /^ #define PetscDefined_arg_ /;" d language:C++
PetscDefined_arg_1 include/petscmacros.h /^ #define PetscDefined_arg_1 /;" d language:C++
@@ -24995,7 +25115,7 @@
PetscDeviceContextGetStreamHandle_Internal include/petsc/private/deviceimpl.h /^static inline PetscErrorCode PetscDeviceContextGetStreamHandle_Internal(PetscDeviceContext dctx,/;" f language:C++ typeref:typename:PetscErrorCode
PetscDeviceContextGetStreamType include/petscdevice.h /^ #define PetscDeviceContextGetStreamType(/;" d language:C++
PetscDeviceContextGetStreamType src/sys/objects/device/interface/dcontext.cxx /^PetscErrorCode PetscDeviceContextGetStreamType(PetscDeviceContext dctx, PetscStreamType *type)$/;" f language:C++ typeref:typename:PetscErrorCode
-PetscDeviceContextJoin include/petscdevice.h /^ #define PetscDeviceContextJoin(/;" d language:C++
+PetscDeviceContextJoin include/petscdevice.h /^ #define PetscDeviceContextJoin(PetscDeviceContextp, PetscInt, PetscDeviceContextJoinM/;" d language:C++
PetscDeviceContextJoin src/sys/objects/device/interface/dcontext.cxx /^PetscErrorCode PetscDeviceContextJoin(PetscDeviceContext dctx, PetscInt n, PetscDeviceContextJoi/;" f language:C++ typeref:typename:PetscErrorCode
PetscDeviceContextJoinMode include/petscdevicetypes.h /^} PetscDeviceContextJoinMode;$/;" t language:C++ typeref:enum:__anonc4f6d6b20703
PetscDeviceContextJoinModes include/petscdevicetypes.h /^PETSC_EXTERN const char *const PetscDeviceContextJoinModes[];$/;" v language:C++ typeref:typename:PETSC_EXTERN const char * const[]
@@ -25647,7 +25767,7 @@
PetscExpComplex include/petscmath.h /^ #define PetscExpComplex(/;" d language:C++
PetscExpReal include/petscmath.h /^ #define PetscExpReal(/;" d language:C++
PetscExpScalar include/petscmath.h /^ #define PetscExpScalar(/;" d language:C++
-PetscExpand include/petscmacros.h /^#define PetscExpand(/;" d language:C++
+PetscExpand include/petscmacros.h /^#define PetscExpand(...) PetscExpand_/;" d language:C++
PetscExpandToNothing include/petscmacros.h /^ #define PetscExpandToNothing(/;" d language:C++
PetscExpand_ include/petscmacros.h /^#define PetscExpand_(/;" d language:C++
PetscExternalHelpFunction src/sys/objects/init.c /^PetscErrorCode (*PetscExternalHelpFunction)(MPI_Comm) = NULL;$/;" v language:C typeref:typename:PetscErrorCode (*)(MPI_Comm)
@@ -25922,7 +26042,7 @@
PetscFreeSpaceDestroy src/mat/utils/freespace.c /^PetscErrorCode PetscFreeSpaceDestroy(PetscFreeSpaceList head)$/;" f language:C typeref:typename:PetscErrorCode
PetscFreeSpaceGet src/mat/utils/freespace.c /^PetscErrorCode PetscFreeSpaceGet(PetscInt n, PetscFreeSpaceList *list)$/;" f language:C typeref:typename:PetscErrorCode
PetscFreeSpaceList src/mat/utils/freespace.h /^typedef struct _n_PetscFreeSpaceList *PetscFreeSpaceList;$/;" t language:C++ typeref:struct:_n_PetscFreeSpaceList *
-PetscFreeWithMemType src/vec/is/sf/tests/ex1k.kokkos.cxx /^#define PetscFreeWithMemType(/;" d language:C++ file:
+PetscFreeWithMemType src/vec/is/sf/tests/ex1k.kokkos.cxx /^#define PetscFreeWithMemType(t, p) ((p) && (PetscFreeWithMemType_/;" d language:C++ file:
PetscFreeWithMemType_Private src/vec/is/sf/tests/ex1k.kokkos.cxx /^static inline PetscErrorCode PetscFreeWithMemType_Private(PetscMemType mtype, void *ptr)$/;" f language:C++ typeref:typename:PetscErrorCode file:
PetscFunctionBegin include/petscerror.h /^ #define PetscFunctionBegin /;" d language:C++
PetscFunctionBegin include/petscerror.h /^ #define PetscFunctionBegin$/;" d language:C++
@@ -25934,13 +26054,13 @@
PetscFunctionGenerator src/mat/impls/h2opus/cuda/math2opus.cu /^ PetscFunctionGenerator(PetscFunctionGenerator &other)$/;" f language:C
PetscFunctionList include/petsc/finclude/petscsys.h /^#define PetscFunctionList /;" d language:C++
PetscFunctionList include/petscsystypes.h /^typedef struct _n_PetscFunctionList *PetscFunctionList;$/;" t language:C++ typeref:struct:_n_PetscFunctionList *
-PetscFunctionListAdd include/petscsys.h /^#define PetscFunctionListAdd(/;" d language:C++
+PetscFunctionListAdd include/petscsys.h /^#define PetscFunctionListAdd(list, name, fptr) PetscFunctionListAdd_/;" d language:C++
PetscFunctionListAdd_Private src/sys/dll/reg.c /^PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList *fl, const char name[/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
PetscFunctionListClear src/sys/dll/reg.c /^PetscErrorCode PetscFunctionListClear(PetscFunctionList fl)$/;" f language:C typeref:typename:PetscErrorCode
PetscFunctionListCreateNode_Private src/sys/dll/reg.c /^static PetscErrorCode PetscFunctionListCreateNode_Private(PetscFunctionList *entry, const char n/;" f language:C typeref:typename:PetscErrorCode file:
PetscFunctionListDestroy src/sys/dll/reg.c /^PetscErrorCode PetscFunctionListDestroy(PetscFunctionList *fl)$/;" f language:C typeref:typename:PetscErrorCode
PetscFunctionListDuplicate src/sys/dll/reg.c /^PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList fl, PetscFunctionList *nl)$/;" f language:C typeref:typename:PetscErrorCode
-PetscFunctionListFind include/petscsys.h /^#define PetscFunctionListFind(/;" d language:C++
+PetscFunctionListFind include/petscsys.h /^#define PetscFunctionListFind(list, name, fptr) PetscFunctionListFind_/;" d language:C++
PetscFunctionListFind_Private src/sys/dll/reg.c /^PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList fl, const char name[/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
PetscFunctionListGet src/sys/dll/reg.c /^PetscErrorCode PetscFunctionListGet(PetscFunctionList list, const char ***array, int *n)$/;" f language:C typeref:typename:PetscErrorCode
PetscFunctionListPrintAll src/sys/dll/reg.c /^PetscErrorCode PetscFunctionListPrintAll(void)$/;" f language:C typeref:typename:PetscErrorCode
@@ -26105,7 +26225,7 @@
PetscHash_t include/petsc/private/hashtable.h /^typedef khint_t PetscHash_t;$/;" t language:C++ typeref:typename:khint_t
PetscHeaderCreate include/petsc/private/petscimpl.h /^#define PetscHeaderCreate(/;" d language:C++
PetscHeaderCreate_Private src/sys/objects/inherit.c /^PetscErrorCode PetscHeaderCreate_Private(PetscObject h, PetscClassId classid, const char class_n/;" f language:C typeref:typename:PetscErrorCode
-PetscHeaderDestroy include/petsc/private/petscimpl.h /^#define PetscHeaderDestroy(/;" d language:C++
+PetscHeaderDestroy include/petsc/private/petscimpl.h /^#define PetscHeaderDestroy(h) (PetscHeaderDestroy_/;" d language:C++
PetscHeaderDestroy_Private src/sys/objects/inherit.c /^PetscErrorCode PetscHeaderDestroy_Private(PetscObject obj, PetscBool clear_for_reuse)$/;" f language:C typeref:typename:PetscErrorCode
PetscHeaderReset_Internal src/sys/objects/inherit.c /^PetscErrorCode PetscHeaderReset_Internal(PetscObject obj)$/;" f language:C typeref:typename:PetscErrorCode
PetscHeap include/petscsystypes.h /^typedef struct _PetscHeap *PetscHeap;$/;" t language:C++ typeref:struct:_PetscHeap *
@@ -26148,6 +26268,7 @@
PetscImageSetClip src/sys/classes/draw/impls/image/drawimage.h /^static inline void PetscImageSetClip(PetscImage img, int x, int y, int w, int h)$/;" f language:C++ typeref:typename:void
PetscImaginaryPart include/petsc/finclude/petscsys.h /^#define PetscImaginaryPart(/;" d language:C++
PetscImaginaryPart include/petscmath.h /^ #define PetscImaginaryPart(/;" d language:C++
+PetscImaginaryPart include/petscmath.h /^ #define PetscImaginaryPart(a) PetscImaginaryPartC/;" d language:C++
PetscImaginaryPartComplex include/petscmath.h /^ #define PetscImaginaryPartComplex(/;" d language:C++
PetscImaginaryPartComplex include/petscmath.h /^ #define PetscImaginaryPartComplex(/;" d language:C++
PetscIncompleteLLAdd include/petsc/private/matimpl.h /^static inline PetscErrorCode PetscIncompleteLLAdd(PetscInt nidx, const PetscInt *PETSC_RESTRICT /;" f language:C++ typeref:typename:PetscErrorCode
@@ -26159,6 +26280,7 @@
PetscIncompleteLLInit include/petsc/private/matimpl.h /^static inline PetscErrorCode PetscIncompleteLLInit(PetscInt nidx, const PetscInt *PETSC_RESTRICT/;" f language:C++ typeref:typename:PetscErrorCode
PetscIncompleteLLInsertLocation_Private include/petsc/private/matimpl.h /^static inline PetscErrorCode PetscIncompleteLLInsertLocation_Private(PetscBool assume_sorted, Pe/;" f language:C++ typeref:typename:PetscErrorCode
PetscInfo include/petsclog.h /^ #define PetscInfo(/;" d language:C++
+PetscInfo include/petsclog.h /^ #define PetscInfo(A, ...) PetscInfo_/;" d language:C++
PetscInfo1 include/petsclog.h /^#define PetscInfo1(/;" d language:C++
PetscInfo2 include/petsclog.h /^#define PetscInfo2(/;" d language:C++
PetscInfo3 include/petsclog.h /^#define PetscInfo3(/;" d language:C++
@@ -26198,7 +26320,7 @@
PetscInfoSetFromOptions src/sys/info/verboseinfo.c /^PetscErrorCode PetscInfoSetFromOptions(PetscOptions options)$/;" f language:C typeref:typename:PetscErrorCode
PetscInfo_Private src/sys/info/verboseinfo.c /^PetscErrorCode PetscInfo_Private(const char func[], PetscObject obj, const char message[], ...)$/;" f language:C typeref:typename:PetscErrorCode
PetscInitFortran_Private src/sys/objects/ftn-custom/zstart.c /^PETSC_INTERN PetscErrorCode PetscInitFortran_Private(PetscBool readarguments,const char *filenam/;" f language:C typeref:typename:PETSC_INTERN PetscErrorCode
-PetscInitialize src/binding/petsc4py/src/include/compat/mpi.h /^#define PetscInitialize /;" d language:C++
+PetscInitialize src/binding/petsc4py/src/include/compat/mpi.h /^#define PetscInitialize PetscInitialize_/;" d language:C++
PetscInitialize src/sys/f90-mod/petscsysmod.F90 /^ interface PetscInitialize$/;" i language:Fortran
PetscInitialize src/sys/objects/pinit.c /^PetscErrorCode PetscInitialize(int *argc, char ***args, const char file[], const char help[])$/;" f language:C typeref:typename:PetscErrorCode
PetscInitializeCalled include/petscsys.h /^PETSC_EXTERN PetscBool PetscInitializeCalled;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscBool
@@ -26296,19 +26418,19 @@
PetscKernel_A_gets_transpose_A_BODY include/petsc/private/kernels/blocktranspose.h /^#define PetscKernel_A_gets_transpose_A_BODY(/;" d language:C++
PetscKernel_A_gets_transpose_A_DECLARE include/petsc/private/kernels/blocktranspose.h /^#define PetscKernel_A_gets_transpose_A_DECLARE(/;" d language:C++
PetscKernel_A_gets_transpose_A_N include/petsc/private/kernels/blocktranspose.h /^static inline PetscErrorCode PetscKernel_A_gets_transpose_A_N(MatScalar *a, PetscInt N)$/;" f language:C++ typeref:typename:PetscErrorCode
-PetscKernel_v_gets_A_times_w_1 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_1(/;" d language:C++
+PetscKernel_v_gets_A_times_w_1 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_1(v, A, w) PetscKernel_v_gets_A_times_w_1_/;" d language:C++
PetscKernel_v_gets_A_times_w_1_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_1_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_2 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_2(/;" d language:C++
+PetscKernel_v_gets_A_times_w_2 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_2(v, A, w) PetscKernel_v_gets_A_times_w_2_/;" d language:C++
PetscKernel_v_gets_A_times_w_2_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_2_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_3 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_3(/;" d language:C++
+PetscKernel_v_gets_A_times_w_3 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_3(v, A, w) PetscKernel_v_gets_A_times_w_3_/;" d language:C++
PetscKernel_v_gets_A_times_w_3_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_3_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_4 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_4(/;" d language:C++
+PetscKernel_v_gets_A_times_w_4 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_4(v, A, w) PetscKernel_v_gets_A_times_w_4_/;" d language:C++
PetscKernel_v_gets_A_times_w_4_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_4_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_5 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_5(/;" d language:C++
+PetscKernel_v_gets_A_times_w_5 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_5(v, A, w) PetscKernel_v_gets_A_times_w_5_/;" d language:C++
PetscKernel_v_gets_A_times_w_5_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_5_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_6 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_6(/;" d language:C++
+PetscKernel_v_gets_A_times_w_6 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_6(v, A, w) PetscKernel_v_gets_A_times_w_6_/;" d language:C++
PetscKernel_v_gets_A_times_w_6_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_6_exp(/;" d language:C++
-PetscKernel_v_gets_A_times_w_7 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_7(/;" d language:C++
+PetscKernel_v_gets_A_times_w_7 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_7(v, A, w) PetscKernel_v_gets_A_times_w_7_/;" d language:C++
PetscKernel_v_gets_A_times_w_7_exp include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_A_times_w_7_exp(/;" d language:C++
PetscKernel_v_gets_v_minus_A_times_w include/petsc/private/kernels/blockinvert.h /^ #define PetscKernel_v_gets_v_minus_A_times_w(/;" d language:C++
PetscKernel_v_gets_v_minus_A_times_w_1 include/petsc/private/kernels/blockmatmult.h /^#define PetscKernel_v_gets_v_minus_A_times_w_1(/;" d language:C++
@@ -26715,7 +26837,7 @@
PetscMUMPSIntCast src/mat/impls/aij/mpi/mumps/mumps.c /^static inline PetscErrorCode PetscMUMPSIntCast(PetscInt a, PetscMUMPSInt *b)$/;" f language:C typeref:typename:PetscErrorCode file:
PetscMUMPS_c src/mat/impls/aij/mpi/mumps/mumps.c /^ #define PetscMUMPS_c(/;" d language:C file:
PetscMacroReturnStandard include/petscmacros.h /^ #define PetscMacroReturnStandard(/;" d language:C++
-PetscMacroReturns include/petscmacros.h /^ #define PetscMacroReturns(/;" d language:C++
+PetscMacroReturns include/petscmacros.h /^ #define PetscMacroReturns(retexpr, ...) PetscMacroReturns_/;" d language:C++
PetscMacroReturns_ include/petscmacros.h /^ #define PetscMacroReturns_(/;" d language:C++
PetscMalloc include/petscsys.h /^#define PetscMalloc(/;" d language:C++
PetscMalloc src/benchmarks/makefile /^PetscMalloc: PetscMalloc.o $/;" t language:Make
@@ -26820,14 +26942,14 @@
PetscNestedEvent src/sys/logging/xmllogevent.c /^} PetscNestedEvent;$/;" t language:C typeref:struct:__anonf83b73860108 file:
PetscNestedEventTree src/sys/logging/xmllogevent.c /^} PetscNestedEventTree;$/;" t language:C typeref:struct:__anonf83b73860208 file:
PetscNew include/petscsys.h /^#define PetscNew(/;" d language:C++
-PetscNewLog include/petscsys.h /^#define PetscNewLog(/;" d language:C++
+PetscNewLog include/petscsys.h /^#define PetscNewLog(o, b) PETSC_DEPRECATED_MACRO("GCC warning \\"PetscNewLog /;" d language:C++
PetscNodeRecursive_Internal src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c /^static PetscErrorCode PetscNodeRecursive_Internal(PetscInt dim, PetscInt degree, PetscReal **nod/;" f language:C typeref:typename:PetscErrorCode file:
PetscNot include/petscsys.h /^#define PetscNot(/;" d language:C++
PetscNumOMPThreads include/petsc/private/petscimpl.h /^PETSC_EXTERN PetscInt PetscNumOMPThreads;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscInt
PetscNumOMPThreads src/sys/objects/pinit.c /^PetscInt PetscNumOMPThreads;$/;" v language:C typeref:typename:PetscInt
PetscNvshmemCalloc src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu /^PetscErrorCode PetscNvshmemCalloc(size_t size, void **ptr)$/;" f language:C typeref:typename:PetscErrorCode
PetscNvshmemFinalize src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu /^PetscErrorCode PetscNvshmemFinalize(void)$/;" f language:C typeref:typename:PetscErrorCode
-PetscNvshmemFree include/petsc/private/cudavecimpl.h /^ #define PetscNvshmemFree(/;" d language:C++
+PetscNvshmemFree include/petsc/private/cudavecimpl.h /^ #define PetscNvshmemFree(ptr) ((ptr) && (PetscNvshmemFree_/;" d language:C++
PetscNvshmemFree_Private src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu /^PetscErrorCode PetscNvshmemFree_Private(void *ptr)$/;" f language:C typeref:typename:PetscErrorCode
PetscNvshmemInitializeCheck src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu /^PetscErrorCode PetscNvshmemInitializeCheck(void)$/;" f language:C typeref:typename:PetscErrorCode
PetscNvshmemInitialized include/petscsys.h /^PETSC_EXTERN PetscBool PetscNvshmemInitialized;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscBool
@@ -26848,7 +26970,7 @@
PetscObjectComm src/sys/objects/gcomm.c /^MPI_Comm PetscObjectComm(PetscObject obj)$/;" f language:C typeref:typename:MPI_Comm
PetscObjectCompareId src/sys/objects/state.c /^PetscErrorCode PetscObjectCompareId(PetscObject obj, PetscObjectId id, PetscBool *eq)$/;" f language:C typeref:typename:PetscErrorCode
PetscObjectCompose src/sys/objects/inherit.c /^PetscErrorCode PetscObjectCompose(PetscObject obj, const char name[], PetscObject ptr)$/;" f language:C typeref:typename:PetscErrorCode
-PetscObjectComposeFunction include/petscsys.h /^#define PetscObjectComposeFunction(/;" d language:C++
+PetscObjectComposeFunction include/petscsys.h /^#define PetscObjectComposeFunction(a, b, d) PetscObjectComposeFunction_/;" d language:C++
PetscObjectComposeFunction_Petsc src/sys/objects/inherit.c /^PetscErrorCode PetscObjectComposeFunction_Petsc(PetscObject obj, const char name[], void (*ptr)(/;" f language:C typeref:typename:PetscErrorCode
PetscObjectComposeFunction_Private src/sys/objects/inherit.c /^PetscErrorCode PetscObjectComposeFunction_Private(PetscObject obj, const char name[], void (*fpt/;" f language:C typeref:typename:PetscErrorCode
PetscObjectCompose_Petsc src/sys/objects/inherit.c /^PetscErrorCode PetscObjectCompose_Petsc(PetscObject obj, const char name[], PetscObject ptr)$/;" f language:C typeref:typename:PetscErrorCode
@@ -26915,7 +27037,7 @@
PetscObjectPrintClassNamePrefixType src/sys/objects/pname.c /^PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject obj, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
PetscObjectProcessOptionsHandlers src/sys/objects/inherit.c /^PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject obj, PetscOptionItems *PetscOptions/;" f language:C typeref:typename:PetscErrorCode
PetscObjectQuery src/sys/objects/inherit.c /^PetscErrorCode PetscObjectQuery(PetscObject obj, const char name[], PetscObject *ptr)$/;" f language:C typeref:typename:PetscErrorCode
-PetscObjectQueryFunction include/petscsys.h /^#define PetscObjectQueryFunction(/;" d language:C++
+PetscObjectQueryFunction include/petscsys.h /^#define PetscObjectQueryFunction(obj, name, fptr) PetscObjectQueryFunction_/;" d language:C++
PetscObjectQueryFunction_Petsc src/sys/objects/inherit.c /^PetscErrorCode PetscObjectQueryFunction_Petsc(PetscObject obj, const char name[], void (**ptr)(v/;" f language:C typeref:typename:PetscErrorCode
PetscObjectQueryFunction_Private src/sys/objects/inherit.c /^PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject obj, const char name[],/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
PetscObjectQuery_Petsc src/sys/objects/inherit.c /^PetscErrorCode PetscObjectQuery_Petsc(PetscObject obj, const char name[], PetscObject *ptr)$/;" f language:C typeref:typename:PetscErrorCode
@@ -26950,7 +27072,7 @@
PetscObjectStateSet src/sys/objects/state.c /^PetscErrorCode PetscObjectStateSet(PetscObject obj, PetscObjectState state)$/;" f language:C typeref:typename:PetscErrorCode
PetscObjectTypeCompare src/sys/objects/destroy.c /^PetscErrorCode PetscObjectTypeCompare(PetscObject obj, const char type_name[], PetscBool *same)$/;" f language:C typeref:typename:PetscErrorCode
PetscObjectTypeCompareAny src/sys/objects/destroy.c /^PetscErrorCode PetscObjectTypeCompareAny(PetscObject obj, PetscBool *match, const char type_name/;" f language:C typeref:typename:PetscErrorCode
-PetscObjectUseFortranCallback include/petsc/private/fortranimpl.h /^#define PetscObjectUseFortranCallback(/;" d language:C++
+PetscObjectUseFortranCallback include/petsc/private/fortranimpl.h /^#define PetscObjectUseFortranCallback(obj, cid, types, args) PetscObjectUseFortranCallbac/;" d language:C++
PetscObjectUseFortranCallbackSubType include/petsc/private/fortranimpl.h /^#define PetscObjectUseFortranCallbackSubType(/;" d language:C++
PetscObjectUseFortranCallback_Private include/petsc/private/fortranimpl.h /^#define PetscObjectUseFortranCallback_Private(/;" d language:C++
PetscObjectView src/sys/objects/destroy.c /^PetscErrorCode PetscObjectView(PetscObject obj, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
@@ -27003,18 +27125,18 @@
PetscOptionItemCreate_Private src/sys/objects/aoptions.c /^static int PetscOptionItemCreate_Private(PetscOptionItems *PetscOptionsObject, const char opt[],/;" f language:C typeref:typename:int file:
PetscOptionItems include/petscoptions.h /^} PetscOptionItems;$/;" t language:C++ typeref:struct:_p_PetscOptionItems
PetscOptionType include/petscoptions.h /^} PetscOptionType;$/;" t language:C++ typeref:enum:__anon53ad41990103
-PetscOptions include/petsc/finclude/petscsys.h /^#define PetscOptions /;" d language:C++
+PetscOptions include/petsc/finclude/petscsys.h /^#define PetscOptions type(tPetscOptions)/;" d language:C++
PetscOptions include/petscoptions.h /^typedef struct _n_PetscOptions *PetscOptions;$/;" t language:C++ typeref:struct:_n_PetscOptions *
PetscOptionsAllUsed src/sys/objects/options.c /^PetscErrorCode PetscOptionsAllUsed(PetscOptions options, PetscInt *N)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsBegin include/petscoptions.h /^ #define PetscOptionsBegin(/;" d language:C++
PetscOptionsBegin_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBegin_Private(PetscOptionItems *PetscOptionsObject, MPI_Comm comm, co/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsBool include/petscoptions.h /^ #define PetscOptionsBool(/;" d language:C++
-PetscOptionsBoolArray include/petscoptions.h /^ #define PetscOptionsBoolArray(/;" d language:C++
+PetscOptionsBool include/petscoptions.h /^ #define PetscOptionsBool(a, b, c, d, e, f) PetscOptionsBool_/;" d language:C++
+PetscOptionsBoolArray include/petscoptions.h /^ #define PetscOptionsBoolArray(a, b, c, d, e, f) PetscOptionsBoolArray_/;" d language:C++
PetscOptionsBoolArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBoolArray_Private(PetscOptionItems *PetscOptionsObject, const char op/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsBoolGroup include/petscoptions.h /^ #define PetscOptionsBoolGroup(/;" d language:C++
-PetscOptionsBoolGroupBegin include/petscoptions.h /^ #define PetscOptionsBoolGroupBegin(/;" d language:C++
+PetscOptionsBoolGroup include/petscoptions.h /^ #define PetscOptionsBoolGroup(a, b, c, d) PetscOptionsBoolGroup_/;" d language:C++
+PetscOptionsBoolGroupBegin include/petscoptions.h /^ #define PetscOptionsBoolGroupBegin(a, b, c, d) PetscOptionsBoolGroupBegin_/;" d language:C++
PetscOptionsBoolGroupBegin_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBoolGroupBegin_Private(PetscOptionItems *PetscOptionsObject, const ch/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsBoolGroupEnd include/petscoptions.h /^ #define PetscOptionsBoolGroupEnd(/;" d language:C++
+PetscOptionsBoolGroupEnd include/petscoptions.h /^ #define PetscOptionsBoolGroupEnd(a, b, c, d) PetscOptionsBoolGroupEnd_/;" d language:C++
PetscOptionsBoolGroupEnd_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBoolGroupEnd_Private(PetscOptionItems *PetscOptionsObject, const char/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsBoolGroup_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBoolGroup_Private(PetscOptionItems *PetscOptionsObject, const char op/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsBool_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsBool_Private(PetscOptionItems *PetscOptionsObject, const char opt[], /;" f language:C typeref:typename:PetscErrorCode
@@ -27024,20 +27146,20 @@
PetscOptionsClearValue src/sys/objects/options.c /^PetscErrorCode PetscOptionsClearValue(PetscOptions options, const char name[])$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsCreate src/sys/objects/options.c /^PetscErrorCode PetscOptionsCreate(PetscOptions *options)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsCreateDefault src/sys/objects/options.c /^PetscErrorCode PetscOptionsCreateDefault(void)$/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsDeprecated include/petscoptions.h /^ #define PetscOptionsDeprecated(/;" d language:C++
+PetscOptionsDeprecated include/petscoptions.h /^ #define PetscOptionsDeprecated(a, b, c, d) PetscOptionsDeprecated_/;" d language:C++
PetscOptionsDeprecatedNoObject include/petscoptions.h /^ #define PetscOptionsDeprecatedNoObject(/;" d language:C++
PetscOptionsDeprecated_Private src/sys/objects/options.c /^PetscErrorCode PetscOptionsDeprecated_Private(PetscOptionItems *PetscOptionsObject, const char o/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsDestroy src/sys/objects/options.c /^PetscErrorCode PetscOptionsDestroy(PetscOptions *options)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsDestroyDefault src/sys/objects/options.c /^PetscErrorCode PetscOptionsDestroyDefault(void)$/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsEList include/petscoptions.h /^ #define PetscOptionsEList(/;" d language:C++
+PetscOptionsEList include/petscoptions.h /^ #define PetscOptionsEList(a, b, c, d, e, f, g, h) PetscOptionsEList_/;" d language:C++
PetscOptionsEList_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsEList_Private(PetscOptionItems *PetscOptionsObject, const char opt[],/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsEnd include/petscoptions.h /^ #define PetscOptionsEnd(/;" d language:C++
PetscOptionsEnd_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsEnd_Private(PetscOptionItems *PetscOptionsObject)$/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsEnum include/petscoptions.h /^ #define PetscOptionsEnum(/;" d language:C++
-PetscOptionsEnumArray include/petscoptions.h /^ #define PetscOptionsEnumArray(/;" d language:C++
+PetscOptionsEnum include/petscoptions.h /^ #define PetscOptionsEnum(a, b, c, d, e, f, g) PetscOptionsEnum_/;" d language:C++
+PetscOptionsEnumArray include/petscoptions.h /^ #define PetscOptionsEnumArray(a, b, c, d, e, f, g) PetscOptionsEnumArray_/;" d language:C++
PetscOptionsEnumArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsEnumArray_Private(PetscOptionItems *PetscOptionsObject, const char op/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsEnum_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsEnum_Private(PetscOptionItems *PetscOptionsObject, const char opt[], /;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsFList include/petscoptions.h /^ #define PetscOptionsFList(/;" d language:C++
+PetscOptionsFList include/petscoptions.h /^ #define PetscOptionsFList(a, b, c, d, e, f, g, h) PetscOptionsFList_/;" d language:C++
PetscOptionsFList_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsFList_Private(PetscOptionItems *PetscOptionsObject, const char opt[],/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsFilename src/sys/objects/options.c /^static PetscErrorCode PetscOptionsFilename(MPI_Comm comm, const char file[], char filename[PETSC/;" f language:C typeref:typename:PetscErrorCode file:
PetscOptionsFindPair src/sys/objects/options.c /^PetscErrorCode PetscOptionsFindPair(PetscOptions options, const char pre[], const char name[], c/;" f language:C typeref:typename:PetscErrorCode
@@ -27066,7 +27188,7 @@
PetscOptionsHasHelp src/sys/objects/options.c /^PetscErrorCode PetscOptionsHasHelp(PetscOptions options, PetscBool *set)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsHasHelpIntro_Internal src/sys/objects/options.c /^PetscErrorCode PetscOptionsHasHelpIntro_Internal(PetscOptions options, PetscBool *set)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsHasName src/sys/objects/options.c /^PetscErrorCode PetscOptionsHasName(PetscOptions options, const char pre[], const char name[], Pe/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsHead include/petscoptions.h /^ #define PetscOptionsHead(/;" d language:C++
+PetscOptionsHead include/petscoptions.h /^ #define PetscOptionsHead(...) PETSC_DEPRECATED_MACRO("GCC warning \\"Use PetscOptionsHeadBegin/;" d language:C++
PetscOptionsHeadBegin include/petscoptions.h /^ #define PetscOptionsHeadBegin(/;" d language:C++
PetscOptionsHeadEnd include/petscoptions.h /^ #define PetscOptionsHeadEnd(/;" d language:C++
PetscOptionsHelpPrinted include/petscsystypes.h /^typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted;$/;" t language:C++ typeref:struct:_n_PetscOptionsHelpPrinted *
@@ -27081,21 +27203,21 @@
PetscOptionsInsertFileYAML src/sys/objects/optionsyaml.c /^PetscErrorCode PetscOptionsInsertFileYAML(MPI_Comm comm, PetscOptions options, const char file[]/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsInsertString src/sys/objects/options.c /^PetscErrorCode PetscOptionsInsertString(PetscOptions options, const char in_str[])$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsInsertStringYAML src/sys/objects/optionsyaml.c /^PetscErrorCode PetscOptionsInsertStringYAML(PetscOptions options, const char in_str[])$/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsInt include/petscoptions.h /^ #define PetscOptionsInt(/;" d language:C++
-PetscOptionsIntArray include/petscoptions.h /^ #define PetscOptionsIntArray(/;" d language:C++
+PetscOptionsInt include/petscoptions.h /^ #define PetscOptionsInt(a, b, c, d, e, f) PetscOptionsInt_/;" d language:C++
+PetscOptionsIntArray include/petscoptions.h /^ #define PetscOptionsIntArray(a, b, c, d, e, f) PetscOptionsIntArray_/;" d language:C++
PetscOptionsIntArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsIntArray_Private(PetscOptionItems *PetscOptionsObject, const char opt/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsInt_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsInt_Private(PetscOptionItems *PetscOptionsObject, const char opt[], c/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsLeft src/sys/objects/options.c /^PetscErrorCode PetscOptionsLeft(PetscOptions options)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsLeftError src/sys/objects/options.c /^PetscErrorCode PetscOptionsLeftError(void)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsLeftGet src/sys/objects/options.c /^PetscErrorCode PetscOptionsLeftGet(PetscOptions options, PetscInt *N, char **names[], char **val/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsLeftRestore src/sys/objects/options.c /^PetscErrorCode PetscOptionsLeftRestore(PetscOptions options, PetscInt *N, char **names[], char */;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsMUMPSInt src/mat/impls/aij/mpi/mumps/mumps.c /^#define PetscOptionsMUMPSInt(/;" d language:C file:
+PetscOptionsMUMPSInt src/mat/impls/aij/mpi/mumps/mumps.c /^#define PetscOptionsMUMPSInt(a, b, c, d, e, f) PetscOptionsMUMPSInt_/;" d language:C file:
PetscOptionsMUMPSInt_Private src/mat/impls/aij/mpi/mumps/mumps.c /^static inline PetscErrorCode PetscOptionsMUMPSInt_Private(PetscOptionItems *PetscOptionsObject, /;" f language:C typeref:typename:PetscErrorCode file:
PetscOptionsMonitor src/sys/objects/options.c /^static PetscErrorCode PetscOptionsMonitor(PetscOptions options, const char name[], const char va/;" f language:C typeref:typename:PetscErrorCode file:
PetscOptionsMonitorCustom src/sys/tests/options/ex55.c /^PetscErrorCode PetscOptionsMonitorCustom(const char name[], const char value[], void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsMonitorDefault src/sys/objects/options.c /^PetscErrorCode PetscOptionsMonitorDefault(const char name[], const char value[], void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsMonitorSet src/sys/objects/options.c /^PetscErrorCode PetscOptionsMonitorSet(PetscErrorCode (*monitor)(const char name[], const char va/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsName include/petscoptions.h /^ #define PetscOptionsName(/;" d language:C++
+PetscOptionsName include/petscoptions.h /^ #define PetscOptionsName(a, b, c, d) PetscOptionsName_/;" d language:C++
PetscOptionsName_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsName_Private(PetscOptionItems *PetscOptionsObject, const char opt[], /;" f language:C typeref:typename:PetscErrorCode
PetscOptionsPop src/sys/objects/options.c /^PetscErrorCode PetscOptionsPop(void)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsPopGetViewerOff src/sys/classes/viewer/interface/viewreg.c /^PetscErrorCode PetscOptionsPopGetViewerOff(void)$/;" f language:C typeref:typename:PetscErrorCode
@@ -27107,23 +27229,23 @@
PetscOptionsPush src/sys/objects/options.c /^PetscErrorCode PetscOptionsPush(PetscOptions opt)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsPushGetViewerOff src/sys/classes/viewer/interface/viewreg.c /^PetscErrorCode PetscOptionsPushGetViewerOff(PetscBool flg)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsRangeInt include/petscoptions.h /^ #define PetscOptionsRangeInt(/;" d language:C++
-PetscOptionsReal include/petscoptions.h /^ #define PetscOptionsReal(/;" d language:C++
-PetscOptionsRealArray include/petscoptions.h /^ #define PetscOptionsRealArray(/;" d language:C++
+PetscOptionsReal include/petscoptions.h /^ #define PetscOptionsReal(a, b, c, d, e, f) PetscOptionsReal_/;" d language:C++
+PetscOptionsRealArray include/petscoptions.h /^ #define PetscOptionsRealArray(a, b, c, d, e, f) PetscOptionsRealArray_/;" d language:C++
PetscOptionsRealArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsRealArray_Private(PetscOptionItems *PetscOptionsObject, const char op/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsReal_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsReal_Private(PetscOptionItems *PetscOptionsObject, const char opt[], /;" f language:C typeref:typename:PetscErrorCode
PetscOptionsReject src/sys/objects/options.c /^PetscErrorCode PetscOptionsReject(PetscOptions options, const char pre[], const char name[], con/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsSAWsDestroy src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsSAWsDestroy(void)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsSAWsInput src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsSAWsInput(PetscOptionItems *PetscOptionsObject)$/;" f language:C typeref:typename:PetscErrorCode
-PetscOptionsScalar include/petscoptions.h /^ #define PetscOptionsScalar(/;" d language:C++
-PetscOptionsScalarArray include/petscoptions.h /^ #define PetscOptionsScalarArray(/;" d language:C++
+PetscOptionsScalar include/petscoptions.h /^ #define PetscOptionsScalar(a, b, c, d, e, f) PetscOptionsScalar_/;" d language:C++
+PetscOptionsScalarArray include/petscoptions.h /^ #define PetscOptionsScalarArray(a, b, c, d, e, f) PetscOptionsScalarArray_/;" d language:C++
PetscOptionsScalarArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsScalarArray_Private(PetscOptionItems *PetscOptionsObject, const char /;" f language:C typeref:typename:PetscErrorCode
PetscOptionsScalar_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsScalar_Private(PetscOptionItems *PetscOptionsObject, const char opt[]/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsSetAlias src/sys/objects/options.c /^PetscErrorCode PetscOptionsSetAlias(PetscOptions options, const char newname[], const char oldna/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsSetValue src/sys/objects/options.c /^PetscErrorCode PetscOptionsSetValue(PetscOptions options, const char name[], const char value[])$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsSetValue_Private src/sys/objects/options.c /^static PetscErrorCode PetscOptionsSetValue_Private(PetscOptions options, const char name[], cons/;" f language:C typeref:typename:PetscErrorCode file:
PetscOptionsSkipPrecedent src/sys/objects/options.c /^static inline PetscErrorCode PetscOptionsSkipPrecedent(PetscOptions options, const char name[], /;" f language:C typeref:typename:PetscErrorCode file:
-PetscOptionsString include/petscoptions.h /^ #define PetscOptionsString(/;" d language:C++
-PetscOptionsStringArray include/petscoptions.h /^ #define PetscOptionsStringArray(/;" d language:C++
+PetscOptionsString include/petscoptions.h /^ #define PetscOptionsString(a, b, c, d, e, f, g) PetscOptionsString_/;" d language:C++
+PetscOptionsStringArray include/petscoptions.h /^ #define PetscOptionsStringArray(a, b, c, d, e, f) PetscOptionsStringArray_/;" d language:C++
PetscOptionsStringArray_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsStringArray_Private(PetscOptionItems *PetscOptionsObject, const char /;" f language:C typeref:typename:PetscErrorCode
PetscOptionsStringToBool src/sys/objects/options.c /^PetscErrorCode PetscOptionsStringToBool(const char value[], PetscBool *a)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsStringToBoolIfSet_Private src/sys/objects/options.c /^static inline PetscErrorCode PetscOptionsStringToBoolIfSet_Private(enum PetscPrecedentOption opt/;" f language:C typeref:typename:PetscErrorCode file:
@@ -27136,7 +27258,7 @@
PetscOptionsValidKey src/sys/objects/options.c /^PetscErrorCode PetscOptionsValidKey(const char key[], PetscBool *valid)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsView src/sys/objects/options.c /^PetscErrorCode PetscOptionsView(PetscOptions options, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
PetscOptionsViewError src/sys/objects/options.c /^PETSC_EXTERN PetscErrorCode PetscOptionsViewError(void)$/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
-PetscOptionsViewer include/petscviewer.h /^#define PetscOptionsViewer(/;" d language:C++
+PetscOptionsViewer include/petscviewer.h /^#define PetscOptionsViewer(a, b, c, d, e, f) PetscOptionsViewer_/;" d language:C++
PetscOptionsViewer_Private src/sys/objects/aoptions.c /^PetscErrorCode PetscOptionsViewer_Private(PetscOptionItems *PetscOptionsObject, const char opt[]/;" f language:C typeref:typename:PetscErrorCode
PetscP4estFinalize src/dm/impls/forest/p4est/petsc_p4est_package.c /^static PetscErrorCode PetscP4estFinalize(void)$/;" f language:C typeref:typename:PetscErrorCode file:
PetscP4estInitialize src/dm/impls/forest/p4est/petsc_p4est_package.c /^PetscErrorCode PetscP4estInitialize(void)$/;" f language:C typeref:typename:PetscErrorCode
@@ -27344,7 +27466,7 @@
PetscQuadratureView src/dm/dt/interface/dt.c /^PetscErrorCode PetscQuadratureView(PetscQuadrature quad, PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
PetscQuadratureView_Ascii src/dm/dt/interface/dt.c /^static PetscErrorCode PetscQuadratureView_Ascii(PetscQuadrature quad, PetscViewer v)$/;" f language:C typeref:typename:PetscErrorCode file:
PetscRMTree src/sys/fileio/fdir.c /^PetscErrorCode PetscRMTree(const char dir[])$/;" f language:C typeref:typename:PetscErrorCode
-PetscRandom include/petsc/finclude/petscsys.h /^#define PetscRandom /;" d language:C++
+PetscRandom include/petsc/finclude/petscsys.h /^#define PetscRandom type(tPetscRandom)/;" d language:C++
PetscRandom include/petscsystypes.h /^typedef struct _p_PetscRandom *PetscRandom;$/;" t language:C++ typeref:struct:_p_PetscRandom *
PetscRandom123 src/sys/classes/random/impls/random123/random123.c /^} PetscRandom123;$/;" t language:C typeref:struct:_n_PetscRandom123 file:
PetscRandom123Step src/sys/classes/random/impls/random123/random123.c /^static PetscReal PetscRandom123Step(PetscRandom123 *r123)$/;" f language:C typeref:typename:PetscReal file:
@@ -27425,6 +27547,7 @@
PetscRealIntMultTruncate include/petscsys.h /^static inline PetscInt PetscRealIntMultTruncate(PetscReal a, PetscInt b)$/;" f language:C++ typeref:typename:PetscInt
PetscRealPart include/petsc/finclude/petscsys.h /^#define PetscRealPart(/;" d language:C++
PetscRealPart include/petscmath.h /^ #define PetscRealPart(/;" d language:C++
+PetscRealPart include/petscmath.h /^ #define PetscRealPart(a) PetscRealPartC/;" d language:C++
PetscRealPartComplex include/petscmath.h /^ #define PetscRealPartComplex(/;" d language:C++
PetscRealPartComplex include/petscmath.h /^ #define PetscRealPartComplex(/;" d language:C++
PetscRealSortSemiOrdered src/sys/utils/sortso.c /^PetscErrorCode PetscRealSortSemiOrdered(PetscInt n, PetscReal arr[])$/;" f language:C typeref:typename:PetscErrorCode
@@ -27447,7 +27570,7 @@
PetscSEMOperators src/tao/unconstrained/tutorials/burgers_spectral.c /^} PetscSEMOperators;$/;" t language:C typeref:struct:__anoned66bdd90408 file:
PetscSEMOperators src/tao/unconstrained/tutorials/spectraladjointassimilation.c /^} PetscSEMOperators;$/;" t language:C typeref:struct:__anonef88fef60408 file:
PetscSEMOperators src/ts/tutorials/ex50.c /^} PetscSEMOperators;$/;" t language:C typeref:struct:__anone0e434db0408 file:
-PetscSF include/petsc/finclude/petscis.h /^#define PetscSF /;" d language:C++
+PetscSF include/petsc/finclude/petscis.h /^#define PetscSF type(tPetscSF)/;" d language:C++
PetscSF include/petscsftypes.h /^typedef struct _p_PetscSF *PetscSF;$/;" t language:C++ typeref:struct:_p_PetscSF *
PetscSFAint src/vec/is/sf/impls/basic/neighbor/sfneighbor.c /^typedef MPI_Aint PetscSFAint;$/;" t language:C typeref:typename:MPI_Aint file:
PetscSFAint src/vec/is/sf/impls/basic/neighbor/sfneighbor.c /^typedef PetscMPIInt PetscSFAint;$/;" t language:C typeref:typename:PetscMPIInt file:
@@ -27722,13 +27845,14 @@
PetscSSEHardwareTest src/sys/utils/sseenabled.c /^ #define PetscSSEHardwareTest(/;" d language:C file:
PetscSSEHardwareTest src/sys/utils/sseenabled.c /^PetscErrorCode PetscSSEHardwareTest(PetscBool *flag)$/;" f language:C typeref:typename:PetscErrorCode
PetscSSEIsEnabled src/sys/utils/sseenabled.c /^PetscErrorCode PetscSSEIsEnabled(MPI_Comm comm, PetscBool *lflag, PetscBool *gflag)$/;" f language:C typeref:typename:PetscErrorCode
-PetscSSEOSEnabledTest src/sys/utils/sseenabled.c /^ #define PetscSSEOSEnabledTest(/;" d language:C file:
+PetscSSEOSEnabledTest src/sys/utils/sseenabled.c /^ #define PetscSSEOSEnabledTest(arg) PetscSSEOSEnabledTest_/;" d language:C file:
PetscSSEOSEnabledTest src/sys/utils/sseenabled.c /^ #define PetscSSEOSEnabledTest(/;" d language:C file:
PetscSSEOSEnabledTest_Linux src/sys/utils/sseenabled.c /^PetscErrorCode PetscSSEOSEnabledTest_Linux(PetscBool *flag)$/;" f language:C typeref:typename:PetscErrorCode
PetscSSEOSEnabledTest_TRUE src/sys/utils/sseenabled.c /^PetscErrorCode PetscSSEOSEnabledTest_TRUE(PetscBool *flag)$/;" f language:C typeref:typename:PetscErrorCode
PetscSSLDestroyContext src/sys/webclient/client.c /^PetscErrorCode PetscSSLDestroyContext(SSL_CTX *ctx)$/;" f language:C typeref:typename:PetscErrorCode
PetscSSLInitializeContext src/sys/webclient/client.c /^PetscErrorCode PetscSSLInitializeContext(SSL_CTX **octx)$/;" f language:C typeref:typename:PetscErrorCode
PetscScAbort src/dm/impls/forest/p4est/petsc_p4est_package.c /^ #define PetscScAbort /;" d language:C file:
+PetscScAbort src/dm/impls/forest/p4est/petsc_p4est_package.c /^ #define PetscScAbort PetscScAbort_/;" d language:C file:
PetscScAbort_longjmp src/dm/impls/forest/p4est/petsc_p4est_package.c /^PETSC_INTERN void PetscScAbort_longjmp(void)$/;" f language:C typeref:typename:PETSC_INTERN void
PetscScJumpBuf src/dm/impls/forest/p4est/petsc_p4est_package.c /^PETSC_VISIBILITY_INTERNAL jmp_buf PetscScJumpBuf;$/;" v language:C typeref:typename:PETSC_VISIBILITY_INTERNAL jmp_buf
PetscScJumpBuf src/dm/impls/forest/p4est/petsc_p4est_package.h /^PETSC_INTERN jmp_buf PetscScJumpBuf;$/;" v language:C++ typeref:typename:PETSC_INTERN jmp_buf
@@ -27752,7 +27876,7 @@
PetscScalarToPetscInt src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu /^struct PetscScalarToPetscInt {$/;" s language:C file:
PetscScalarView src/sys/error/err.c /^PetscErrorCode PetscScalarView(PetscInt N, const PetscScalar idx[], PetscViewer viewer)$/;" f language:C typeref:typename:PetscErrorCode
PetscScanString src/sys/objects/aoptions.c /^static PetscErrorCode PetscScanString(MPI_Comm comm, size_t n, char str[])$/;" f language:C typeref:typename:PetscErrorCode file:
-PetscSection include/petsc/finclude/petscis.h /^#define PetscSection /;" d language:C++
+PetscSection include/petsc/finclude/petscis.h /^#define PetscSection type(tPetscSection)/;" d language:C++
PetscSection include/petscsectiontypes.h /^typedef struct _p_PetscSection *PetscSection;$/;" t language:C++ typeref:struct:_p_PetscSection *
PetscSectionAddConstraintDof src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionAddConstraintDof(PetscSection s, PetscInt point, PetscInt numDof)$/;" f language:C typeref:typename:PetscErrorCode
PetscSectionAddDof src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionAddDof(PetscSection s, PetscInt point, PetscInt numDof)$/;" f language:C typeref:typename:PetscErrorCode
@@ -27857,7 +27981,7 @@
PetscSectionSetUp src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionSetUp(PetscSection s)$/;" f language:C typeref:typename:PetscErrorCode
PetscSectionSetUpBC src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionSetUpBC(PetscSection s)$/;" f language:C typeref:typename:PetscErrorCode
PetscSectionSetUseFieldOffsets src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionSetUseFieldOffsets(PetscSection s, PetscBool flg)$/;" f language:C typeref:typename:PetscErrorCode
-PetscSectionSym include/petsc/finclude/petscis.h /^#define PetscSectionSym /;" d language:C++
+PetscSectionSym include/petsc/finclude/petscis.h /^#define PetscSectionSym type(tPetscSectionSym)/;" d language:C++
PetscSectionSym include/petscsectiontypes.h /^typedef struct _p_PetscSectionSym *PetscSectionSym;$/;" t language:C++ typeref:struct:_p_PetscSectionSym *
PetscSectionSymCopy src/vec/is/section/interface/section.c /^PetscErrorCode PetscSectionSymCopy(PetscSectionSym sym, PetscSectionSym nsym)$/;" f language:C typeref:typename:PetscErrorCode
PetscSectionSymCopy_Label src/dm/label/dmlabel.c /^static PetscErrorCode PetscSectionSymCopy_Label(PetscSectionSym sym, PetscSectionSym nsym)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -28129,6 +28253,7 @@
PetscSparseDenseMaxDot src/mat/impls/aij/seq/aij.h /^#define PetscSparseDenseMaxDot(/;" d language:C++
PetscSparseDenseMinusDot src/mat/impls/aij/seq/aij.h /^ #define PetscSparseDenseMinusDot(/;" d language:C++
PetscSparseDensePlusDot src/mat/impls/aij/seq/aij.h /^ #define PetscSparseDensePlusDot(/;" d language:C++
+PetscSparseDensePlusDot src/mat/impls/aij/seq/aij.h /^ #define PetscSparseDensePlusDot(sum, r, xv, xi, nnz) PetscSparseDensePlusDot_/;" d language:C++
PetscSparseDensePlusDot_AVX512_Private src/mat/impls/aij/seq/aij.h /^static inline void PetscSparseDensePlusDot_AVX512_Private(PetscScalar *sum, const PetscScalar *x/;" f language:C++ typeref:typename:void
PetscSparseDensePlusDot_no_function src/mat/impls/sbaij/seq/relax.h /^ #define PetscSparseDensePlusDot_no_function(/;" d language:C++
PetscSpinlock include/petsc/private/petscimpl.h /^typedef ck_spinlock_t PetscSpinlock;$/;" t language:C++ typeref:typename:ck_spinlock_t
@@ -28246,7 +28371,7 @@
PetscStrendswith src/sys/utils/str.c /^PetscErrorCode PetscStrendswith(const char a[], const char b[], PetscBool *flg)$/;" f language:C typeref:typename:PetscErrorCode
PetscStrendswithwhich src/sys/utils/str.c /^PetscErrorCode PetscStrendswithwhich(const char a[], const char *const *bs, PetscInt *cnt)$/;" f language:C typeref:typename:PetscErrorCode
PetscStrgrt src/sys/utils/str.c /^PetscErrorCode PetscStrgrt(const char a[], const char b[], PetscBool *t)$/;" f language:C typeref:typename:PetscErrorCode
-PetscStringize include/petscmacros.h /^#define PetscStringize(/;" d language:C++
+PetscStringize include/petscmacros.h /^#define PetscStringize(...) PetscStringize_/;" d language:C++
PetscStringize_ include/petscmacros.h /^#define PetscStringize_(/;" d language:C++
PetscStripAllZeros src/sys/classes/draw/utils/axisc.c /^PetscErrorCode PetscStripAllZeros(char *buf)$/;" f language:C typeref:typename:PetscErrorCode
PetscStripInitialZero src/sys/classes/draw/utils/axisc.c /^PetscErrorCode PetscStripInitialZero(char *buf)$/;" f language:C typeref:typename:PetscErrorCode
@@ -28266,7 +28391,7 @@
PetscStrtolower src/sys/utils/str.c /^PetscErrorCode PetscStrtolower(char a[])$/;" f language:C typeref:typename:PetscErrorCode
PetscStrtoupper src/sys/utils/str.c /^PetscErrorCode PetscStrtoupper(char a[])$/;" f language:C typeref:typename:PetscErrorCode
PetscStrtoz src/sys/objects/options.c /^static PetscErrorCode PetscStrtoz(const char name[], PetscScalar *a, char **endptr, PetscBool *i/;" f language:C typeref:typename:PetscErrorCode file:
-PetscSubcomm include/petsc/finclude/petscsys.h /^#define PetscSubcomm /;" d language:C++
+PetscSubcomm include/petsc/finclude/petscsys.h /^#define PetscSubcomm type(tPetscSubcomm)/;" d language:C++
PetscSubcomm include/petscsystypes.h /^typedef struct _n_PetscSubcomm *PetscSubcomm;$/;" t language:C++ typeref:struct:_n_PetscSubcomm *
PetscSubcommChild include/petscsys.h /^static inline MPI_Comm PetscSubcommChild(PetscSubcomm scomm)$/;" f language:C++ typeref:typename:MPI_Comm
PetscSubcommContiguousParent include/petscsys.h /^static inline MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm)$/;" f language:C++ typeref:typename:MPI_Comm
@@ -28421,6 +28546,7 @@
PetscValidLogicalCollectiveRealComm src/ts/interface/tshistory.c /^ #define PetscValidLogicalCollectiveRealComm(/;" d language:C file:
PetscValidLogicalCollectiveScalar include/petsc/private/petscimpl.h /^ #define PetscValidLogicalCollectiveScalar(/;" d language:C++
PetscValidPointer include/petsc/private/petscimpl.h /^ #define PetscValidPointer(/;" d language:C++
+PetscValidPointer include/petsc/private/petscimpl.h /^ #define PetscValidPointer(h, arg) PetscValidPointer_/;" d language:C++
PetscValidPointer_Internal include/petsc/private/petscimpl.h /^ #define PetscValidPointer_Internal(/;" d language:C++
PetscValidRealPointer include/petsc/private/petscimpl.h /^ #define PetscValidRealPointer(/;" d language:C++
PetscValidScalarPointer include/petsc/private/petscimpl.h /^ #define PetscValidScalarPointer(/;" d language:C++
@@ -28434,7 +28560,7 @@
PetscViennaCLInit src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /^PETSC_EXTERN PetscErrorCode PetscViennaCLInit()$/;" f language:C++ typeref:typename:PETSC_EXTERN PetscErrorCode
PetscViennaCLSynchronize include/petscsys.h /^PETSC_EXTERN PetscBool PetscViennaCLSynchronize;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscBool
PetscViennaCLSynchronize src/sys/objects/pinit.c /^PetscBool PetscViennaCLSynchronize = PETSC_FALSE;$/;" v language:C typeref:typename:PetscBool
-PetscViewer include/petsc/finclude/petscviewer.h /^#define PetscViewer /;" d language:C++
+PetscViewer include/petsc/finclude/petscviewer.h /^#define PetscViewer type(tPetscViewer)/;" d language:C++
PetscViewer include/petscviewertypes.h /^typedef struct _p_PetscViewer *PetscViewer;$/;" t language:C++ typeref:struct:_p_PetscViewer *
PetscViewerADIOSOpen src/sys/classes/viewer/impls/adios/adios.c /^PetscErrorCode PetscViewerADIOSOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscV/;" f language:C typeref:typename:PetscErrorCode
PetscViewerASCIIAddTab src/sys/classes/viewer/impls/ascii/filev.c /^PetscErrorCode PetscViewerASCIIAddTab(PetscViewer viewer, PetscInt tabs)$/;" f language:C typeref:typename:PetscErrorCode
@@ -29215,7 +29341,7 @@
PostStep src/ts/tutorials/power_grid/ex8.c /^PetscErrorCode PostStep(TS ts)$/;" f language:C typeref:typename:PetscErrorCode
PostStepFunction src/ts/tutorials/power_grid/ex9adj.c /^PetscErrorCode PostStepFunction(TS ts)$/;" f language:C typeref:typename:PetscErrorCode
PostUnpack src/vec/is/sf/impls/basic/sfpack.h /^ PetscErrorCode (*PostUnpack)(PetscSF, PetscSFLink, PetscSFDirection);$/;" m language:C++ struct:_n_PetscSFLink typeref:typename:PetscErrorCode (*)(PetscSF,PetscSFLink,PetscSFDirection)
-Pow src/sys/classes/draw/tests/ex6.c /^#define Pow /;" d language:C file:
+Pow src/sys/classes/draw/tests/ex6.c /^#define Pow PetscPowR/;" d language:C file:
Pp_re src/ksp/pc/impls/telescope/telescope.h /^ PetscInt Mp_re, Np_re, Pp_re;$/;" m language:C++ struct:__anon1025b6fc0208 typeref:typename:PetscInt
Pr src/snes/tutorials/ex31.c /^ PetscReal Ma, Pr, h_0;$/;" m language:C struct:__anon520d672c0108 typeref:typename:PetscReal file:
PreCheck src/snes/tutorials/ex15.c /^typedef struct _n_PreCheck *PreCheck;$/;" t language:C typeref:struct:_n_PreCheck * file:
@@ -29247,8 +29373,8 @@
Pressure_PG src/ts/tutorials/ex11_sa.c /^static PetscErrorCode Pressure_PG(const PetscReal *pars, const EulerNode *x, PetscScalar *p)$/;" f language:C typeref:typename:PetscErrorCode file:
Prime src/sys/tests/ex63.c /^PetscErrorCode Prime(PetscInt64 **set, PetscInt n)$/;" f language:C typeref:typename:PetscErrorCode
Print src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Sys-class.html /^ <td><span class="summary-sig"><a name="Print"><\/a><span class="summary-sig-name">Prin/;" a language:HTML
-Print src/snes/tests/ex18f90.F90 /^ procedure, public :: Print /;" M language:Fortran type:base_type
-Print src/snes/tests/ex18f90.F90 /^ procedure, public :: Print /;" M language:Fortran type:extended_type
+Print src/snes/tests/ex18f90.F90 /^ procedure, public :: Print => ExtendedPrint$/;" M language:Fortran type:extended_type
+Print src/snes/tests/ex18f90.F90 /^ procedure, public :: Print => BasePrint$/;" M language:Fortran type:base_type
PrintCsrMatrix src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx /^PETSC_INTERN PetscErrorCode PrintCsrMatrix(const KokkosCsrMatrix &csrmat)$/;" f language:C++ typeref:typename:PETSC_INTERN PetscErrorCode
PrintSet src/sys/tests/ex62.c /^PetscErrorCode PrintSet(PetscInt64 *set)$/;" f language:C typeref:typename:PetscErrorCode
PrintSet src/sys/tests/ex63.c /^PetscErrorCode PrintSet(MPI_Comm comm, PetscInt64 *set)$/;" f language:C typeref:typename:PetscErrorCode
@@ -29584,6 +29710,7 @@
READ_WRITE src/ksp/pc/impls/svd/svd.c /^ READ_WRITE = 3$/;" e language:C enum:__anon33190f890203 file:
REAL src/ksp/pc/impls/parms/parms.c /^#define REAL /;" d language:C file:
REAL_FILE_CLASSID include/petscvec.h /^#define REAL_FILE_CLASSID /;" d language:C++
+REDIRECT_TO src/benchmarks/daemon.py /^ REDIRECT_TO = "\/dev\/null"$/;" v language:Python
REDIRECT_TO src/benchmarks/daemon.py /^ REDIRECT_TO = os.devnull$/;" v language:Python
REDISTRIBUTE src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.Type-class.html /^ <a name="REDISTRIBUTE"><\/a><span class="summary-name">REDISTRIBUTE<\/span> = <code titl/;" a language:HTML
REDUCT src/ksp/ksp/tests/benchmarkscatters/ex1.c /^ REDUCT,$/;" e language:C enum:__anon4d8f05fa0103 file:
@@ -29792,12 +29919,12 @@
RICHARDSON src/binding/petsc4py/docs/apiref/petsc4py.PETSc.KSP.Type-class.html /^ <a name="RICHARDSON"><\/a><span class="summary-name">RICHARDSON<\/span> = <code title="'/;" a language:HTML
RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="RIGHT"><\/a><span class="summary-name">RIGHT<\/span> = <code title="15">15<\/co/;" a language:HTML
RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.Side-class.html /^ <a name="RIGHT"><\/a><span class="summary-name">RIGHT<\/span> = <code title="1">1<\/code/;" a language:HTML
-RIGHT src/dm/impls/stag/tests/ex18.c /^#define RIGHT /;" d language:C file:
-RIGHT src/dm/impls/stag/tests/ex30.c /^#define RIGHT /;" d language:C file:
-RIGHT src/dm/impls/stag/tests/ex5.c /^#define RIGHT /;" d language:C file:
-RIGHT src/dm/impls/stag/tutorials/ex1.c /^#define RIGHT /;" d language:C file:
-RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define RIGHT /;" d language:C file:
-RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define RIGHT /;" d language:C file:
+RIGHT src/dm/impls/stag/tests/ex18.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
+RIGHT src/dm/impls/stag/tests/ex30.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
+RIGHT src/dm/impls/stag/tests/ex5.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
+RIGHT src/dm/impls/stag/tutorials/ex1.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
+RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
+RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define RIGHT DMSTAG_RIGHT$/;" d language:C file:
RIGHT src/ksp/pc/impls/tfs/xxt.c /^#define RIGHT /;" d language:C file:
RIGHT src/ksp/pc/impls/tfs/xyt.c /^#define RIGHT /;" d language:C file:
RINFO src/mat/impls/aij/mpi/mumps/mumps.c /^#define RINFO(/;" d language:C file:
@@ -29828,9 +29955,9 @@
ROWSCALINGVIENNACL src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.Type-class.html /^ <a name="ROWSCALINGVIENNACL"><\/a><span class="summary-name">ROWSCALINGVIENNACL<\/span> /;" a language:HTML
ROWSCALINGVIENNACL src/ksp/pc/impls/rowscalingviennacl/rowscalingviennacl.cxx /^ viennacl::linalg::row_scaling<viennacl::compressed_matrix<PetscScalar>> *ROWSCALINGVIENNACL;$/;" m language:C++ struct:__anon06ce95710108 typeref:typename:viennacl::linalg::row_scaling<viennacl::compressed_matrix<PetscScalar>> * file:
ROW_ORIENTED src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Option-class.html /^ <a name="ROW_ORIENTED"><\/a><span class="summary-name">ROW_ORIENTED<\/span> = <code titl/;" a language:HTML
-RS src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define RS(/;" d language:C++
-RS src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define RS(/;" d language:C++
-RS src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define RS(/;" d language:C++
+RS src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define RS(a) (fgmres->rs_origin + (a)) \/* RS /;" d language:C++
+RS src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define RS(a) (pgmres->rs_origin + (a)) \/* RS /;" d language:C++
+RS src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define RS(a) (pipefgmres->rs_origin + (a)) \/* RS /;" d language:C++
RST2HTML src/binding/petsc4py/makefile /^RST2HTML = $(shell command -v rst2html || command -v rst2html.py || false)$/;" m language:Make
RST2HTMLOPTS src/binding/petsc4py/makefile /^RST2HTMLOPTS = --input-encoding=utf-8$/;" m language:Make
RT src/dm/impls/plex/plexfem.c /^ PetscScalar *RT; \/* The transposed rotation matrix, transforming a vector in the global ba/;" m language:C struct:__anon4059c83a0108 typeref:typename:PetscScalar * file:
@@ -30246,12 +30373,12 @@
SL3 src/dm/impls/plex/gmshlex.h /^#define SL3(/;" d language:C++
SLEN src/vec/vec/tests/ex48.c /^#define SLEN /;" d language:C file:
SLICED src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DM.Type-class.html /^ <a name="SLICED"><\/a><span class="summary-name">SLICED<\/span> = <code title="'sliced'"/;" a language:HTML
-SLU src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SLU /;" d language:C file:
+SLU src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SLU SLU_/;" d language:C file:
SMV src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define SMV /;" d language:C++
SN1 src/dm/impls/plex/gmshlex.h /^#define SN1(/;" d language:C++
SN2 src/dm/impls/plex/gmshlex.h /^#define SN2(/;" d language:C++
SN3 src/dm/impls/plex/gmshlex.h /^#define SN3(/;" d language:C++
-SNES include/petsc/finclude/petscsnes.h /^#define SNES /;" d language:C++
+SNES include/petsc/finclude/petscsnes.h /^#define SNES type(tSNES)/;" d language:C++
SNES include/petscsnes.h /^typedef struct _p_SNES *SNES;$/;" t language:C++ typeref:struct:_p_SNES *
SNES src/mat/matfd/ftn-custom/zfdmatrixf.c /^typedef struct _p_SNES *SNES;$/;" t language:C typeref:struct:_p_SNES * file:
SNESANDERSON include/petscsnes.h /^#define SNESANDERSON /;" d language:C++
@@ -30952,7 +31079,7 @@
SNESShellSetContext src/snes/impls/shell/snesshell.c /^PetscErrorCode SNESShellSetContext(SNES snes, void *ctx)$/;" f language:C typeref:typename:PetscErrorCode
SNESShellSetSolve src/snes/impls/shell/snesshell.c /^PetscErrorCode SNESShellSetSolve(SNES snes, PetscErrorCode (*solve)(SNES, Vec))$/;" f language:C typeref:typename:PetscErrorCode
SNESShellSetSolve_Shell src/snes/impls/shell/snesshell.c /^PetscErrorCode SNESShellSetSolve_Shell(SNES snes, PetscErrorCode (*solve)(SNES, Vec))$/;" f language:C typeref:typename:PetscErrorCode
-SNESSkipConverged include/petscsnes.h /^#define SNESSkipConverged /;" d language:C++
+SNESSkipConverged include/petscsnes.h /^#define SNESSkipConverged (SNESSkipConverged,/;" d language:C++
SNESSkipConverged include/petscsnes.h /^PETSC_DEPRECATED_FUNCTION("Use SNESConvergedSkip() (since version 3.5)") static inline void SNES/;" f language:C++ typeref:typename:PETSC_DEPRECATED_FUNCTION ("Use SNESConvergedSkip() (since version 3.5)")void
SNESSolve src/snes/interface/snes.c /^PetscErrorCode SNESSolve(SNES snes, Vec b, Vec x)$/;" f language:C typeref:typename:PetscErrorCode
SNESSolve_Anderson src/snes/impls/ngmres/anderson.c /^static PetscErrorCode SNESSolve_Anderson(SNES snes)$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -31184,7 +31311,7 @@
SOLUTIONONLY src/ts/trajectory/impls/memory/trajmemory.c /^ SOLUTIONONLY = 0,$/;" e language:C enum:__anon11083a3f0203 file:
SOLUTION_STAGES src/ts/trajectory/impls/memory/trajmemory.c /^ SOLUTION_STAGES = 2$/;" e language:C enum:__anon11083a3f0203 file:
SOLVEstruct src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ SOLVEstruct_t SOLVEstruct;$/;" m language:C struct:__anon0965ce5f0108 typeref:typename:SOLVEstruct_t file:
-SOLVEstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SOLVEstruct_t /;" d language:C file:
+SOLVEstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SOLVEstruct_t zSOLVEstruct_t$/;" d language:C file:
SOL_CRYER src/ts/tutorials/ex53.c /^ SOL_CRYER,$/;" e language:C enum:__anone0e4419e0103 file:
SOL_CUBIC src/snes/tutorials/ex76.c /^ SOL_CUBIC,$/;" e language:C enum:__anon520fadf50103 file:
SOL_CUBIC src/ts/tutorials/ex76.c /^ SOL_CUBIC,$/;" e language:C enum:__anone0e567230203 file:
@@ -33295,11 +33422,11 @@
SRState include/petsc/private/petscimpl.h /^} SRState;$/;" t language:C++ typeref:enum:__anonbd63bb570503
SS src/ksp/ksp/impls/gcr/gcr.c /^ Vec *VV, *SS;$/;" m language:C struct:__anon50ac84620108 typeref:typename:Vec * file:
SS src/ksp/ksp/impls/gmres/dgmres/dgmresimpl.h /^#define SS(/;" d language:C++
-SS src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define SS(/;" d language:C++
+SS src/ksp/ksp/impls/gmres/fgmres/fgmresimpl.h /^#define SS(a) (fgmres->ss_origin + (a)) \/* SS /;" d language:C++
SS src/ksp/ksp/impls/gmres/gmresimpl.h /^ #define SS(/;" d language:C++
-SS src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define SS(/;" d language:C++
-SS src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define SS(/;" d language:C++
-SS src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define SS(/;" d language:C++
+SS src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^#define SS(a) (lgmres->ss_origin + (a)) \/* SS /;" d language:C++
+SS src/ksp/ksp/impls/gmres/pgmres/pgmresimpl.h /^#define SS(a) (pgmres->ss_origin + (a)) \/* SS /;" d language:C++
+SS src/ksp/ksp/impls/gmres/pipefgmres/pipefgmresimpl.h /^#define SS(a) (pipefgmres->ss_origin + (a)) \/* SS /;" d language:C++
SSE2 src/benchmarks/streams/SSEVersion.c /^# define SSE2 /;" d language:C file:
SSEVersion src/benchmarks/streams/makefile /^SSEVersion: SSEVersion.o$/;" t language:Make
SSE_FEATURE_FLAG src/sys/utils/sseenabled.c /^ #define SSE_FEATURE_FLAG /;" d language:C file:
@@ -33736,9 +33863,9 @@
Scale2 src/ts/tutorials/ex11_sa.c /^static inline void Scale2(PetscScalar a, const PetscScalar *x, PetscScalar *y)$/;" f language:C typeref:typename:void file:
Scale2Real src/ts/tutorials/ex11.c /^static inline void Scale2Real(PetscReal a, const PetscReal *x, PetscReal *y)$/;" f language:C typeref:typename:void file:
ScalePermstruct src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ ScalePermstruct_t ScalePermstruct;$/;" m language:C struct:__anon0965ce5f0108 typeref:typename:ScalePermstruct_t file:
-ScalePermstructFree src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstructFree /;" d language:C file:
-ScalePermstructInit src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstructInit /;" d language:C file:
-ScalePermstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstruct_t /;" d language:C file:
+ScalePermstructFree src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstructFree zScalePermstructFree$/;" d language:C file:
+ScalePermstructInit src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstructInit zScalePermstructInit$/;" d language:C file:
+ScalePermstruct_t src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define ScalePermstruct_t zScalePermstruct_t$/;" d language:C file:
ScaledIdentity src/binding/petsc4py/test/test_mat_py.py /^class ScaledIdentity(Matrix):$/;" c language:Python
Scatter src/tao/pde_constrained/tutorials/elliptic.c /^PetscErrorCode Scatter(Vec x, Vec sub1, VecScatter scat1, Vec sub2, VecScatter scat2)$/;" f language:C typeref:typename:PetscErrorCode
Scatter src/tao/pde_constrained/tutorials/hyperbolic.c /^PetscErrorCode Scatter(Vec x, Vec state, VecScatter s_scat, Vec design, VecScatter d_scat)$/;" f language:C typeref:typename:PetscErrorCode
@@ -33764,7 +33891,7 @@
Script config/BuildSystem/script.py /^class Script(logger.Logger):$/;" c language:Python
Sdiag src/tao/pde_constrained/tutorials/elliptic.c /^ Vec Swork, Twork, Sdiag, Ywork;$/;" m language:C struct:__anon6826b8cd0108 typeref:typename:Vec file:
Search src/binding/petsc4py/docs/usrman/search.html /^ <h1 id="search-documentation">Search<\/h1>$/;" h language:HTML
-Search — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/search.html /^ <title>Search — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Search — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/search.html /^ <title>Search — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
Second src/benchmarks/streams/SSEVersion.c /^static double Second()$/;" f language:C typeref:typename:double file:
Seed src/ts/tutorials/autodiff/adolc-utils/contexts.cxx /^ PetscScalar **Seed, **Rec, *rec;$/;" m language:C++ struct:__anon7c878c320108 typeref:typename:PetscScalar ** file:
SelectBrush src/sys/classes/draw/impls/win32/win32draw.c /^ #define SelectBrush(/;" d language:C file:
@@ -34011,7 +34138,7 @@
SolutionType src/ts/tutorials/ex45.c /^} SolutionType;$/;" t language:C typeref:enum:__anone0e3bdbf0103 file:
SolutionType src/ts/tutorials/ex53.c /^} SolutionType;$/;" t language:C typeref:enum:__anone0e4419e0103 file:
SolutionTypes src/dm/impls/plex/tests/ex39.c /^const char *const SolutionTypes[] = {"linear", "sinusoidal", "Solution", "", NULL};$/;" v language:C typeref:typename:const char * const[]
-SolveFinalize src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SolveFinalize /;" d language:C file:
+SolveFinalize src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define SolveFinalize zSolveFinalize$/;" d language:C file:
SolveODE src/ts/tutorials/ex31.c /^PetscErrorCode SolveODE(char *ptype, PetscReal dt, PetscReal tfinal, PetscInt maxiter, PetscReal/;" f language:C typeref:typename:PetscErrorCode
SolveTimeDepStokes src/ksp/ksp/tutorials/ex70.c /^static PetscErrorCode SolveTimeDepStokes(PetscInt mx, PetscInt my)$/;" f language:C typeref:typename:PetscErrorCode file:
SortByRemote_Private src/dm/impls/plex/plexcheckinterface.c /^static PetscErrorCode SortByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[])$/;" f language:C typeref:typename:PetscErrorCode file:
@@ -34488,7 +34615,7 @@
TRhead src/sys/memory/mtr.c /^static TRSPACE *TRhead = NULL;$/;" v language:C typeref:typename:TRSPACE * file:
TRid src/sys/memory/mtr.c /^static int TRid = 0;$/;" v language:C typeref:typename:int file:
TRrequestedSize src/sys/memory/mtr.c /^static PetscBool TRrequestedSize = PETSC_FALSE;$/;" v language:C typeref:typename:PetscBool file:
-TS include/petsc/finclude/petscts.h /^#define TS /;" d language:C++
+TS include/petsc/finclude/petscts.h /^#define TS type(tTS)/;" d language:C++
TS include/petscts.h /^typedef struct _p_TS *TS;$/;" t language:C++ typeref:struct:_p_TS *
TS src/mat/matfd/ftn-custom/zfdmatrixf.c /^typedef struct _p_TS *TS;$/;" t language:C typeref:struct:_p_TS * file:
TS2GetSolution src/ts/interface/ts.c /^PetscErrorCode TS2GetSolution(TS ts, Vec *u, Vec *v)$/;" f language:C typeref:typename:PetscErrorCode
@@ -34562,7 +34689,7 @@
TSARKIMEXTestMassIdentity src/ts/impls/arkimex/arkimex.c /^static PetscErrorCode TSARKIMEXTestMassIdentity(TS ts, PetscBool *id)$/;" f language:C typeref:typename:PetscErrorCode file:
TSARKIMEXType include/petsc/finclude/petscts.h /^#define TSARKIMEXType /;" d language:C++
TSARKIMEXType include/petscts.h /^typedef const char *TSARKIMEXType;$/;" t language:C++ typeref:typename:const char *
-TSAdapt include/petsc/finclude/petscts.h /^#define TSAdapt /;" d language:C++
+TSAdapt include/petsc/finclude/petscts.h /^#define TSAdapt type(tTSAdapt)/;" d language:C++
TSAdapt include/petscts.h /^typedef struct _p_TSAdapt *TSAdapt;$/;" t language:C++ typeref:struct:_p_TSAdapt *
TSAdaptCandidateAdd src/ts/adapt/interface/tsadapt.c /^PetscErrorCode TSAdaptCandidateAdd(TSAdapt adapt, const char name[], PetscInt order, PetscInt st/;" f language:C typeref:typename:PetscErrorCode
TSAdaptCandidatesClear src/ts/adapt/interface/tsadapt.c /^PetscErrorCode TSAdaptCandidatesClear(TSAdapt adapt)$/;" f language:C typeref:typename:PetscErrorCode
@@ -35674,7 +35801,7 @@
TSThetaSetTheta_Theta src/ts/impls/implicit/theta/theta.c /^static PetscErrorCode TSThetaSetTheta_Theta(TS ts, PetscReal theta)$/;" f language:C typeref:typename:PetscErrorCode file:
TSTheta_SNESSolve src/ts/impls/implicit/theta/theta.c /^static PetscErrorCode TSTheta_SNESSolve(TS ts, Vec b, Vec x)$/;" f language:C typeref:typename:PetscErrorCode file:
TSTimeSpan include/petsc/private/tsimpl.h /^typedef struct _TS_TimeSpan *TSTimeSpan;$/;" t language:C++ typeref:struct:_TS_TimeSpan *
-TSTrajectory include/petsc/finclude/petscts.h /^#define TSTrajectory /;" d language:C++
+TSTrajectory include/petsc/finclude/petscts.h /^#define TSTrajectory type(tTSTrajectory)/;" d language:C++
TSTrajectory include/petscts.h /^typedef struct _p_TSTrajectory *TSTrajectory;$/;" t language:C++ typeref:struct:_p_TSTrajectory *
TSTrajectoryCreate src/ts/trajectory/interface/traj.c /^PetscErrorCode TSTrajectoryCreate(MPI_Comm comm, TSTrajectory *tj)$/;" f language:C typeref:typename:PetscErrorCode
TSTrajectoryCreate_Basic src/ts/trajectory/impls/basic/trajbasic.c /^PETSC_EXTERN PetscErrorCode TSTrajectoryCreate_Basic(TSTrajectory tj, TS ts)$/;" f language:C typeref:typename:PETSC_EXTERN PetscErrorCode
@@ -35937,6 +36064,7 @@
TYPE src/binding/petsc4py/test/test_ts.py /^ TYPE = PETSc.TS.Type.BEULER$/;" v language:Python class:TestTSBeuler
TYPE src/binding/petsc4py/test/test_ts.py /^ TYPE = PETSc.TS.Type.CN$/;" v language:Python class:TestTSCN
TYPE src/binding/petsc4py/test/test_ts.py /^ TYPE = PETSc.TS.Type.THETA$/;" v language:Python class:TestTSTheta
+TYPE src/binding/petsc4py/test/test_vec.py /^ TYPE = PETSc.Vec.Type.MPI$/;" v language:Python class:TestVecShared
TYPE src/binding/petsc4py/test/test_vec.py /^ TYPE = PETSc.Vec.Type.SHARED$/;" v language:Python class:TestVecShared
TYPE src/binding/petsc4py/test/test_vec.py /^ TYPE = None$/;" v language:Python class:BaseTestVec
TYPE src/binding/petsc4py/test/test_vec.py /^ TYPE = PETSc.Vec.Type.MPI$/;" v language:Python class:TestVecMPI
@@ -37031,7 +37159,7 @@
TurnBackward src/ts/trajectory/impls/memory/trajmemory.c /^static PetscErrorCode TurnBackward(TS ts)$/;" f language:C typeref:typename:PetscErrorCode file:
TurnForward src/ts/trajectory/impls/memory/trajmemory.c /^static PetscErrorCode TurnForward(TS ts)$/;" f language:C typeref:typename:PetscErrorCode file:
TurnForwardWithStepsize src/ts/trajectory/impls/memory/trajmemory.c /^static PetscErrorCode TurnForwardWithStepsize(TS ts, PetscReal nextstepsize)$/;" f language:C typeref:typename:PetscErrorCode file:
-Tutorial — PETSc for Python 3.18.4 documentation src/binding/petsc4py/docs/usrman/tutorial.html /^ <title>Tutorial — PETSc for Python 3.18.4 documentation<\/title>$/;" j language:HTML
+Tutorial — PETSc for Python 3.18.5 documentation src/binding/petsc4py/docs/usrman/tutorial.html /^ <title>Tutorial — PETSc for Python 3.18.5 documentation<\/title>$/;" j language:HTML
Tutorial? src/binding/petsc4py/docs/usrman/tutorial.html /^<h1>Tutorial<a class="headerlink" href="#tutorial" title="Permalink to this heading">?<\/a><\/h/;" h language:HTML
Tw src/ts/tutorials/power_grid/ex5.c /^ PetscReal Tw; \/* Filter time constant *\/$/;" m language:C struct:__anon8fab6b8c0108 typeref:typename:PetscReal file:
TwoVec src/sys/tutorials/ex5.c /^} TwoVec;$/;" t language:C typeref:struct:__anon5ad51ec30208 file:
@@ -37095,22 +37223,22 @@
UNUSED_NONZERO_LOCATION_ERR src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.Option-class.html /^ <a name="UNUSED_NONZERO_LOCATION_ERR"><\/a><span class="summary-name">UNUSED_NONZERO_LOC/;" a language:HTML
UNUSED_PARAM src/sys/yaml/src/yaml_private.h /^# define UNUSED_PARAM(/;" d language:C++
UP src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="UP"><\/a><span class="summary-name">UP<\/span> = <code title="17">17<\/code>$/;" a language:HTML
-UP src/dm/impls/stag/tests/ex18.c /^#define UP /;" d language:C file:
-UP src/dm/impls/stag/tests/ex30.c /^#define UP /;" d language:C file:
-UP src/dm/impls/stag/tutorials/ex2.c /^#define UP /;" d language:C file:
-UP src/dm/impls/stag/tutorials/ex3.c /^#define UP /;" d language:C file:
+UP src/dm/impls/stag/tests/ex18.c /^#define UP DMSTAG_UP$/;" d language:C file:
+UP src/dm/impls/stag/tests/ex30.c /^#define UP DMSTAG_UP$/;" d language:C file:
+UP src/dm/impls/stag/tutorials/ex2.c /^#define UP DMSTAG_UP$/;" d language:C file:
+UP src/dm/impls/stag/tutorials/ex3.c /^#define UP DMSTAG_UP$/;" d language:C file:
UPDATE src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Viewer.Mode-class.html /^ <a name="UPDATE"><\/a><span class="summary-name">UPDATE<\/span> = <code title="3">3<\/co/;" a language:HTML
UPPER src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.SchurFactType-class.html /^ <a name="UPPER"><\/a><span class="summary-name">UPPER<\/span> = <code title="2">2<\/code/;" a language:HTML
UP_LEFT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="UP_LEFT"><\/a><span class="summary-name">UP_LEFT<\/span> = <code title="16">16</;" a language:HTML
-UP_LEFT src/dm/impls/stag/tests/ex18.c /^#define UP_LEFT /;" d language:C file:
-UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define UP_LEFT /;" d language:C file:
-UP_LEFT src/dm/impls/stag/tutorials/ex2.c /^#define UP_LEFT /;" d language:C file:
-UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define UP_LEFT /;" d language:C file:
+UP_LEFT src/dm/impls/stag/tests/ex18.c /^#define UP_LEFT DMSTAG_UP_LEFT$/;" d language:C file:
+UP_LEFT src/dm/impls/stag/tests/ex30.c /^#define UP_LEFT DMSTAG_UP_LEFT$/;" d language:C file:
+UP_LEFT src/dm/impls/stag/tutorials/ex2.c /^#define UP_LEFT DMSTAG_UP_LEFT$/;" d language:C file:
+UP_LEFT src/dm/impls/stag/tutorials/ex3.c /^#define UP_LEFT DMSTAG_UP_LEFT$/;" d language:C file:
UP_RIGHT src/binding/petsc4py/docs/apiref/petsc4py.PETSc.DMStag.StencilLocation-class.html /^ <a name="UP_RIGHT"><\/a><span class="summary-name">UP_RIGHT<\/span> = <code title="18">1/;" a language:HTML
-UP_RIGHT src/dm/impls/stag/tests/ex18.c /^#define UP_RIGHT /;" d language:C file:
-UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define UP_RIGHT /;" d language:C file:
-UP_RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define UP_RIGHT /;" d language:C file:
-UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define UP_RIGHT /;" d language:C file:
+UP_RIGHT src/dm/impls/stag/tests/ex18.c /^#define UP_RIGHT DMSTAG_UP_RIGHT$/;" d language:C file:
+UP_RIGHT src/dm/impls/stag/tests/ex30.c /^#define UP_RIGHT DMSTAG_UP_RIGHT$/;" d language:C file:
+UP_RIGHT src/dm/impls/stag/tutorials/ex2.c /^#define UP_RIGHT DMSTAG_UP_RIGHT$/;" d language:C file:
+UP_RIGHT src/dm/impls/stag/tutorials/ex3.c /^#define UP_RIGHT DMSTAG_UP_RIGHT$/;" d language:C file:
USER src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.PatchConstructType-class.html /^ <a name="USER"><\/a><span class="summary-name">USER<\/span> = <code title="3">3<\/code>$/;" a language:HTML
USER src/binding/petsc4py/docs/apiref/petsc4py.PETSc.PC.SchurPreType-class.html /^ <a name="USER"><\/a><span class="summary-name">USER<\/span> = <code title="3">3<\/code>$/;" a language:HTML
USESHORT src/mat/impls/sbaij/seq/sbaij.c /^#define USESHORT$/;" d language:C file:
@@ -37628,7 +37756,7 @@
Variables src/binding/petsc4py/docs/apiref/toc-petsc4py-module.html /^ >init<\/a><br \/> <h2 class="toc">Variables<\/h2>$/;" i language:HTML
Variables src/binding/petsc4py/docs/apiref/toc-petsc4py.PETSc-module.html /^ >garbage_view<\/a><br \/> <h2 class="toc">Variables<\/h2>$/;" i language:HTML
Variables src/binding/petsc4py/docs/apiref/toc-petsc4py.lib-module.html /^ >getPathArchPETSc<\/a><br \/> <h2 class="toc">Variables<\/h2>$/;" i language:HTML
-Vec include/petsc/finclude/petscvec.h /^#define Vec /;" d language:C++
+Vec include/petsc/finclude/petscvec.h /^#define Vec type(tVec)/;" d language:C++
Vec include/petscvec.h /^typedef struct _p_Vec *Vec;$/;" t language:C++ typeref:struct:_p_Vec *
VecAXPBY src/vec/vec/interface/rvector.c /^PetscErrorCode VecAXPBY(Vec y, PetscScalar alpha, PetscScalar beta, Vec x)$/;" f language:C typeref:typename:PetscErrorCode
VecAXPBYPCZ src/vec/vec/interface/rvector.c /^PetscErrorCode VecAXPBYPCZ(Vec z, PetscScalar alpha, PetscScalar beta, PetscScalar gamma, Vec x,/;" f language:C typeref:typename:PetscErrorCode
@@ -38206,7 +38334,7 @@
VecScale_SeqCUDA src/vec/vec/impls/seq/seqcuda/veccuda2.cu /^PetscErrorCode VecScale_SeqCUDA(Vec xin, PetscScalar alpha)$/;" f language:C typeref:typename:PetscErrorCode
VecScale_SeqKokkos src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx /^PetscErrorCode VecScale_SeqKokkos(Vec xin, PetscScalar alpha)$/;" f language:C++ typeref:typename:PetscErrorCode
VecScale_SeqViennaCL src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /^PetscErrorCode VecScale_SeqViennaCL(Vec xin, PetscScalar alpha)$/;" f language:C++ typeref:typename:PetscErrorCode
-VecScatter include/petsc/finclude/petscvec.h /^#define VecScatter /;" d language:C++
+VecScatter include/petsc/finclude/petscvec.h /^#define VecScatter type(tVecScatter)/;" d language:C++
VecScatter include/petscsftypes.h /^typedef PetscSF VecScatter;$/;" t language:C++ typeref:typename:PetscSF
VecScatterBegin src/vec/is/sf/interface/vscat.c /^PetscErrorCode VecScatterBegin(VecScatter sf, Vec x, Vec y, InsertMode addv, ScatterMode mode)$/;" f language:C typeref:typename:PetscErrorCode
VecScatterBegin_Internal src/vec/is/sf/interface/vscat.c /^static PetscErrorCode VecScatterBegin_Internal(VecScatter sf, Vec x, Vec y, InsertMode addv, Sca/;" f language:C typeref:typename:PetscErrorCode file:
@@ -38375,7 +38503,7 @@
VecTDot_SeqCUDA src/vec/vec/impls/seq/seqcuda/veccuda2.cu /^PetscErrorCode VecTDot_SeqCUDA(Vec xin, Vec yin, PetscScalar *z)$/;" f language:C typeref:typename:PetscErrorCode
VecTDot_SeqKokkos src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx /^PetscErrorCode VecTDot_SeqKokkos(Vec xin, Vec yin, PetscScalar *z)$/;" f language:C++ typeref:typename:PetscErrorCode
VecTDot_SeqViennaCL src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /^PetscErrorCode VecTDot_SeqViennaCL(Vec xin, Vec yin, PetscScalar *z)$/;" f language:C++ typeref:typename:PetscErrorCode
-VecTagger include/petsc/finclude/petscvec.h /^#define VecTagger /;" d language:C++
+VecTagger include/petsc/finclude/petscvec.h /^#define VecTagger type(tVecTagger)/;" d language:C++
VecTagger include/petscvec.h /^typedef struct _p_VecTagger *VecTagger;$/;" t language:C++ typeref:struct:_p_VecTagger *
VecTaggerAbsoluteGetBox src/vec/vec/utils/tagger/impls/absolute.c /^PetscErrorCode VecTaggerAbsoluteGetBox(VecTagger tagger, const VecTaggerBox **box)$/;" f language:C typeref:typename:PetscErrorCode
VecTaggerAbsoluteSetBox src/vec/vec/utils/tagger/impls/absolute.c /^PetscErrorCode VecTaggerAbsoluteSetBox(VecTagger tagger, VecTaggerBox *box)$/;" f language:C typeref:typename:PetscErrorCode
@@ -38669,7 +38797,7 @@
WATERDATA src/snes/tutorials/network/water/water.h /^typedef struct _p_WATERDATA WATERDATA;$/;" t language:C++ typeref:struct:_p_WATERDATA
WATER_H src/snes/tutorials/network/water/water.h /^#define WATER_H$/;" d language:C++
WBM src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat.OrderingType-class.html /^ <a name="WBM"><\/a><span class="summary-name">WBM<\/span> = <code title="'wbm'"><code cl/;" a language:HTML
-WIDTH src/sys/yaml/src/yaml_private.h /^#define WIDTH(/;" d language:C++
+WIDTH src/sys/yaml/src/yaml_private.h /^#define WIDTH(string) WIDTH_/;" d language:C++
WIDTH_AT src/sys/yaml/src/yaml_private.h /^#define WIDTH_AT(/;" d language:C++
WINDOW src/binding/petsc4py/docs/apiref/petsc4py.PETSc.SF.Type-class.html /^ <a name="WINDOW"><\/a><span class="summary-name">WINDOW<\/span> = <code title="'window'"/;" a language:HTML
WINDOW src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Scatter.Type-class.html /^ <a name="WINDOW"><\/a><span class="summary-name">WINDOW<\/span> = <code title="'window'"/;" a language:HTML
@@ -39126,8 +39254,8 @@
_DeviceOps include/petsc/private/deviceimpl.h /^struct _DeviceOps {$/;" s language:C++
_DiskStack src/ts/trajectory/impls/memory/trajmemory.c /^typedef struct _DiskStack {$/;" s language:C file:
_EH src/sys/error/err.c /^struct _EH {$/;" s language:C file:
-_Extension src/binding/petsc4py/conf/baseconf.py /^ from distutils.core import Extension as _Extension$/;" x language:Python nameref:unknown:Extension
-_Extension src/binding/petsc4py/conf/baseconf.py /^ from setuptools import Extension as _Extension$/;" x language:Python nameref:unknown:Extension
+_Extension src/binding/petsc4py/conf/baseconf.py /^ from distutils.core import Extension as _Extension$/;" Y language:Python nameref:unknown:Extension
+_Extension src/binding/petsc4py/conf/baseconf.py /^ from setuptools import Extension as _Extension$/;" Y language:Python nameref:unknown:Extension
_FETIDPMat_ctx include/petsc/private/pcbddcstructsimpl.h /^struct _FETIDPMat_ctx {$/;" s language:C++
_FETIDPPC_ctx include/petsc/private/pcbddcstructsimpl.h /^struct _FETIDPPC_ctx {$/;" s language:C++
_FORESTIMPL_H include/petsc/private/dmforestimpl.h /^#define _FORESTIMPL_H$/;" d language:C++
@@ -39569,9 +39697,9 @@
__anon2717aab90108 src/snes/interface/noise/snesnoise.c /^typedef struct {$/;" s language:C file:
__anon27221bd50108 src/vec/is/sf/tests/ex18.c /^typedef struct {$/;" s language:C file:
__anon272220160108 src/vec/is/sf/tests/ex19.c /^typedef struct {$/;" s language:C file:
-__anon27a8a6f80305 src/vec/vec/tutorials/ex21f90.F90 /^ Interface$/;" i language:Fortran program:main
-__anon27a8a6f80405 src/vec/vec/tutorials/ex21f90.F90 /^ Interface$/;" i language:Fortran program:main
-__anon27de26c40205 src/snes/f90-mod/petscsnesmod.F90 /^ interface$/;" i language:Fortran module:petscsnes
+__anon27a8a6f80105 src/vec/vec/tutorials/ex21f90.F90 /^ Subroutine VecGetArrayMyStruct(v,array,ierr)$/;" i language:Fortran program:main
+__anon27a8a6f80205 src/vec/vec/tutorials/ex21f90.F90 /^ Subroutine VecRestoreArrayMyStruct(v,array,ierr)$/;" i language:Fortran program:main
+__anon27de26c40105 src/snes/f90-mod/petscsnesmod.F90 /^ end interface$/;" i language:Fortran module:petscsnes
__anon28b32cb60108 src/ksp/pc/impls/factor/ilu/ilu.h /^typedef struct {$/;" s language:C++
__anon29da4a4c0108 src/tao/unconstrained/impls/lmvm/lmvm.h /^typedef struct {$/;" s language:C++
__anon2a9b180b0108 src/sys/yaml/src/loader.c /^ struct {$/;" s language:C function:yaml_parser_load_sequence file:
@@ -39751,7 +39879,7 @@
__anon4b1d00310108 src/snes/impls/patch/snespatch.c /^typedef struct {$/;" s language:C file:
__anon4b3d99ac0108 src/tao/leastsquares/tutorials/tomography.c /^typedef struct {$/;" s language:C file:
__anon4ba2638d0103 src/mat/impls/sbaij/mpi/sbaijov.c /^typedef enum {$/;" g language:C file:
-__anon4c45b2fa0205 src/tao/f90-mod/petsctaomod.F90 /^ interface$/;" i language:Fortran module:petsctao
+__anon4c45b2fa0105 src/tao/f90-mod/petsctaomod.F90 /^ end interface$/;" i language:Fortran module:petsctao
__anon4cb6c7bc0108 src/mat/impls/dense/seq/dense.h /^typedef struct {$/;" s language:C++
__anon4d51cde90108 src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c /^typedef struct {$/;" s language:C file:
__anon4d8f05fa0103 src/ksp/ksp/tests/benchmarkscatters/ex1.c /^typedef enum {$/;" g language:C file:
@@ -39765,7 +39893,7 @@
__anon4e7cf6b10808 src/dm/impls/plex/plexgmsh.c /^typedef struct {$/;" s language:C file:
__anon4e7cf6b10903 src/dm/impls/plex/plexgmsh.c /^ enum {$/;" g language:C function:DMPlexCreateGmsh file:
__anon4e7f21970108 src/ksp/ksp/impls/gmres/ftn-custom/zgmres2f.c /^static struct {$/;" s language:C file:
-__anon4eb655a00205 src/ts/f90-mod/petsctsmod.F90 /^ interface$/;" i language:Fortran module:petscts
+__anon4eb655a00105 src/ts/f90-mod/petsctsmod.F90 /^ end interface$/;" i language:Fortran module:petscts
__anon4f1695770108 src/snes/impls/composite/snescomposite.c /^typedef struct {$/;" s language:C file:
__anon5032225d0103 src/sys/fileio/apple_fdir.h /^typedef enum {$/;" g language:C++
__anon50ac84620108 src/ksp/ksp/impls/gcr/gcr.c /^typedef struct {$/;" s language:C file:
@@ -39798,7 +39926,7 @@
__anon520cf0100108 src/snes/tutorials/ex26.c /^typedef struct {$/;" s language:C file:
__anon520d62eb0108 src/snes/tutorials/ex30.c /^typedef struct { \/* holds the variables to be solved for *\/$/;" s language:C file:
__anon520d62eb0208 src/snes/tutorials/ex30.c /^typedef struct { \/* parameters needed to compute viscosity *\/$/;" s language:C file:
-__anon520d62eb0308 src/snes/tutorials/ex30.c /^typedef struct { \/* physical and miscelaneous parameters *\/$/;" s language:C file:
+__anon520d62eb0308 src/snes/tutorials/ex30.c /^typedef struct { \/* physical and miscellaneous parameters *\/$/;" s language:C file:
__anon520d62eb0408 src/snes/tutorials/ex30.c /^typedef struct { \/* grid parameters *\/$/;" s language:C file:
__anon520d62eb0508 src/snes/tutorials/ex30.c /^typedef struct { \/* application context *\/$/;" s language:C file:
__anon520d672c0108 src/snes/tutorials/ex31.c /^typedef struct {$/;" s language:C file:
@@ -39897,7 +40025,7 @@
__anon5f183f170108 src/ksp/ksp/impls/bcgsl/bcgslimpl.h /^typedef struct {$/;" s language:C++
__anon5f588dd60108 src/vec/is/sf/impls/basic/neighbor/sfneighbor.c /^typedef struct {$/;" s language:C file:
__anon5f902cbb0108 src/mat/impls/normal/normmh.c /^typedef struct {$/;" s language:C file:
-__anon5fc0ee590205 src/dm/f90-mod/petscdmdamod.F90 /^ interface$/;" i language:Fortran module:petscdmda
+__anon5fc0ee590105 src/dm/f90-mod/petscdmdamod.F90 /^ end interface$/;" i language:Fortran module:petscdmda
__anon5ffc913b0108 src/ts/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /^typedef struct {$/;" s language:C file:
__anon5ffc913b0208 src/ts/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /^typedef struct {$/;" s language:C file:
__anon5ffc913b0308 src/ts/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c /^typedef struct {$/;" s language:C file:
@@ -40196,7 +40324,7 @@
__anona00dc1c20108 src/sys/mpiuni/mpi.c /^typedef struct {$/;" s language:C file:
__anona00dc1c20208 src/sys/mpiuni/mpi.c /^typedef struct {$/;" s language:C file:
__anona0a3f1cd0108 src/tao/constrained/tutorials/ex1.c /^typedef struct {$/;" s language:C file:
-__anona16edfb60205 src/mat/f90-mod/petscmatmod.F90 /^ interface$/;" i language:Fortran module:petscmat
+__anona16edfb60105 src/mat/f90-mod/petscmatmod.F90 /^ end interface$/;" i language:Fortran module:petscmat
__anona1951cd50108 include/petsc/private/viewercgnsimpl.h /^typedef struct {$/;" s language:C++
__anona30e51b40108 include/petsc/private/viewerexodusiiimpl.h /^typedef struct {$/;" s language:C++
__anona34e24470108 src/sys/objects/fcallback.c /^typedef struct {$/;" s language:C file:
@@ -40363,8 +40491,8 @@
__anonb80463de0608 src/snes/tutorials/network/water/water.h /^typedef struct {$/;" s language:C++
__anonb80463de0708 src/snes/tutorials/network/water/water.h /^ struct { \/* one point curve *\/$/;" s language:C++ struct:__anonb80463de0608
__anonb918d9f20108 src/ksp/pc/impls/factor/factor.h /^typedef struct {$/;" s language:C++
-__anonb97447ad0305 src/dm/f90-mod/petscdmplexmod.F90 /^ interface$/;" i language:Fortran module:petscdmplex
-__anonb97447ad0405 src/dm/f90-mod/petscdmplexmod.F90 /^ interface$/;" i language:Fortran module:petscdmnetwork
+__anonb97447ad0105 src/dm/f90-mod/petscdmplexmod.F90 /^ end interface$/;" i language:Fortran module:petscdmplex
+__anonb97447ad0205 src/dm/f90-mod/petscdmplexmod.F90 /^ end interface$/;" i language:Fortran module:petscdmnetwork
__anonba900f730102 src/sys/objects/device/interface/device.cxx /^ const auto PetscDeviceCheckAllDestroyedAfterFinalize = [] {$/;" f language:C++ function:PetscDeviceFinalize_Private file:
__anonbaf4891d0103 src/sys/memory/mal.c /^typedef enum {$/;" g language:C file:
__anonbaff0dd6010a src/sys/memory/mtr.c /^{$/;" u language:C file:
@@ -40646,11 +40774,11 @@
__anone0e56b640408 src/ts/tutorials/ex77.c /^typedef struct {$/;" s language:C file:
__anone0e56b640508 src/ts/tutorials/ex77.c /^typedef struct {$/;" s language:C file:
__anone22a171e0108 src/snes/utils/ftn-custom/zdmsnesf.c /^static struct {$/;" s language:C file:
-__anone2664ef40605 src/dm/f90-mod/petscdmmod.F90 /^ interface$/;" i language:Fortran module:petscdmlabel
-__anone2664ef40705 src/dm/f90-mod/petscdmmod.F90 /^ interface$/;" i language:Fortran module:petscdm
-__anone2664ef40805 src/dm/f90-mod/petscdmmod.F90 /^ interface$/;" i language:Fortran module:petscdmpatch
-__anone2664ef40905 src/dm/f90-mod/petscdmmod.F90 /^ interface$/;" i language:Fortran module:petscdmforest
-__anone2664ef40a05 src/dm/f90-mod/petscdmmod.F90 /^ interface$/;" i language:Fortran module:petscdt
+__anone2664ef40105 src/dm/f90-mod/petscdmmod.F90 /^ end interface$/;" i language:Fortran module:petscdmlabel
+__anone2664ef40205 src/dm/f90-mod/petscdmmod.F90 /^ end interface$/;" i language:Fortran module:petscdm
+__anone2664ef40305 src/dm/f90-mod/petscdmmod.F90 /^ end interface$/;" i language:Fortran module:petscdmpatch
+__anone2664ef40405 src/dm/f90-mod/petscdmmod.F90 /^ end interface$/;" i language:Fortran module:petscdmforest
+__anone2664ef40505 src/dm/f90-mod/petscdmmod.F90 /^ end interface$/;" i language:Fortran module:petscdt
__anone326b4820103 src/dm/impls/plex/plex.c /^typedef enum {$/;" g language:C file:
__anone3e290950102 src/sys/objects/device/impls/sycl/sycldevice.sycl.cxx /^ const auto SyclSignalHandler = [](int signal, void *ptr) -> PetscErrorCode {$/;" f language:C++ function:Petsc::device::sycl::Device::DeviceInternal::isMPISyclAware_ typeref:typename:PetscErrorCode file:
__anone4efddd60108 src/dm/tests/ex19.c /^ struct {$/;" s language:C function:doit file:
@@ -40658,8 +40786,8 @@
__anone4f065f60103 src/dm/tests/ex28.c /^ typedef enum {$/;" g language:C function:main file:
__anone55c1f9f0108 src/snes/utils/dmsnes.c /^ struct {$/;" s language:C function:DMSNESView file:
__anone55c1f9f0208 src/snes/utils/dmsnes.c /^ struct {$/;" s language:C function:DMSNESView file:
-__anone58fb5ae0305 src/vec/f90-mod/petscvecmod.F90 /^ interface$/;" i language:Fortran module:petscis
-__anone58fb5ae0405 src/vec/f90-mod/petscvecmod.F90 /^ interface$/;" i language:Fortran module:petscvec
+__anone58fb5ae0105 src/vec/f90-mod/petscvecmod.F90 /^ end interface$/;" i language:Fortran module:petscis
+__anone58fb5ae0205 src/vec/f90-mod/petscvecmod.F90 /^ end interface$/;" i language:Fortran module:petscvec
__anone63897530108 src/sys/classes/viewer/impls/vtk/vtkvimpl.h /^typedef struct {$/;" s language:C++
__anone64349db0103 include/petscksp.h /^typedef enum {$/;" g language:C++
__anone64349db0203 include/petscksp.h /^typedef enum {$/;" g language:C++
@@ -40767,7 +40895,7 @@
__anonee3196551303 include/petscpctypes.h /^typedef enum {$/;" g language:C++
__anonee3196551403 include/petscpctypes.h /^typedef enum {$/;" g language:C++
__anonee3196551503 include/petscpctypes.h /^typedef enum {$/;" g language:C++
-__anonee36b4de0205 src/dm/f90-mod/petscdmswarmmod.F90 /^ interface$/;" i language:Fortran module:petscdmswarm
+__anonee36b4de0105 src/dm/f90-mod/petscdmswarmmod.F90 /^ end interface$/;" i language:Fortran module:petscdmswarm
__anonef88fef60108 src/tao/unconstrained/tutorials/spectraladjointassimilation.c /^typedef struct {$/;" s language:C file:
__anonef88fef60208 src/tao/unconstrained/tutorials/spectraladjointassimilation.c /^typedef struct {$/;" s language:C file:
__anonef88fef60308 src/tao/unconstrained/tutorials/spectraladjointassimilation.c /^typedef struct {$/;" s language:C file:
@@ -41585,7 +41713,7 @@
__type_registry__ src/binding/petsc4py/docs/apiref/petsc4py.PETSc-module.html /^ <h3 class="epydoc">__type_registry__<\/h3>$/;" j language:HTML
__type_registry__ src/binding/petsc4py/docs/apiref/petsc4py.PETSc-module.html /^<a name="__type_registry__"><\/a>$/;" a language:HTML
__version__ src/benchmarks/daemon.py /^__version__ = "0.2"$/;" v language:Python
-__version__ src/binding/petsc4py/src/__init__.py /^__version__ = '3.18.4'$/;" v language:Python
+__version__ src/binding/petsc4py/src/__init__.py /^__version__ = '3.18.5'$/;" v language:Python
__warningregistry__ src/binding/petsc4py/docs/apiref/petsc4py.PETSc-module.html /^ <h3 class="epydoc">__warningregistry__<\/h3>$/;" j language:HTML
__warningregistry__ src/binding/petsc4py/docs/apiref/petsc4py.PETSc-module.html /^<a name="__warningregistry__"><\/a>$/;" a language:HTML
__warningregistry__ src/binding/petsc4py/docs/apiref/petsc4py.lib-module.html /^ <h3 class="epydoc">__warningregistry__<\/h3>$/;" j language:HTML
@@ -41660,7 +41788,7 @@
_infix_pforest src/dm/impls/forest/p4est/dmp4est.c /^#define _infix_pforest(/;" d language:C file:
_infix_pforest src/dm/impls/forest/p4est/dmp8est.c /^#define _infix_pforest(/;" d language:C file:
_initialize src/binding/petsc4py/docs/apiref/petsc4py.PETSc-module.html /^ <td><span class="summary-sig"><a name="_initialize"><\/a><span class="summary-sig-name/;" a language:HTML
-_install setup.py /^from setuptools.command.install import install as _install$/;" x language:Python nameref:unknown:install
+_install setup.py /^from setuptools.command.install import install as _install$/;" Y language:Python nameref:unknown:install
_install src/binding/petsc4py/conf/baseconf.py /^_install = import_command('install')$/;" v language:Python
_isBuilt config/gmakegentest.py /^ def _isBuilt(self,exfile,srcDict):$/;" m language:Python class:generateExamples
_isRun config/gmakegentest.py /^ def _isRun(self,testDict, debug=False):$/;" m language:Python class:generateExamples
@@ -41977,6 +42105,7 @@
acols src/mat/impls/aij/seq/crl/crl.h /^ PetscScalar *acols; \/* values of nonzeros, stored as icols *\/$/;" m language:C++ struct:__anon9fe544430108 typeref:typename:PetscScalar *
acoustic_speed src/ts/tutorials/ex9.c /^ PetscReal acoustic_speed;$/;" m language:C struct:__anon9273966f0808 typeref:typename:PetscReal file:
act_nfonts src/sys/classes/draw/impls/x/xtext.c /^static int act_nfonts = 0;$/;" v language:C typeref:typename:int file:
+action config/BuildSystem/RDict.py /^ action = sys.argv[1]$/;" v language:Python
action include/petsc/private/logimpl.h /^ int action; \/* The type of execution *\/$/;" m language:C++ struct:_Action typeref:typename:int
action_list src/mat/impls/aij/seq/aijperm/aijperm.c /^ PetscInt *action_list;$/;" m language:C struct:__anon3caa09cc0108 typeref:typename:PetscInt * file:
activate src/binding/petsc4py/docs/apiref/petsc4py.PETSc.LogClass-class.html /^ <td><span class="summary-sig"><a name="activate"><\/a><span class="summary-sig-name">a/;" a language:HTML
@@ -42206,7 +42335,7 @@
alloc_icol src/mat/impls/aij/seq/bas/spbas.h /^ PetscInt *alloc_icol;$/;" m language:C++ struct:__anon5dfed1d00108 typeref:typename:PetscInt *
alloc_val src/mat/impls/aij/seq/bas/spbas.h /^ PetscScalar *alloc_val;$/;" m language:C++ struct:__anon5dfed1d00108 typeref:typename:PetscScalar *
allocate src/ksp/ksp/utils/lmvm/lmvm.h /^ PetscErrorCode (*allocate)(Mat, Vec, Vec);$/;" m language:C++ struct:_MatOps_LMVM typeref:typename:PetscErrorCode (*)(Mat,Vec,Vec)
-allocateA_dist src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define allocateA_dist /;" d language:C file:
+allocateA_dist src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ #define allocateA_dist zallocateA_dist$/;" d language:C file:
allocated include/petsc/private/isimpl.h /^ PetscBool allocated;$/;" m language:C++ struct:_n_ISColoring typeref:typename:PetscBool
allocated src/dm/impls/swarm/data_bucket.h /^ PetscInt allocated; \/* number allocated, this will equal datafield->L *\/$/;" m language:C++ struct:_p_DMSwarmDataBucket typeref:typename:PetscInt
allocated src/ksp/ksp/utils/lmvm/brdn/brdn.h /^ PetscBool allocated, needP, needQ;$/;" m language:C++ struct:__anon0da5f9520108 typeref:typename:PetscBool
@@ -42231,7 +42360,7 @@
alpha src/ksp/ksp/guess/impls/fischer/fischer.c /^ PetscScalar *alpha; \/* *\/$/;" m language:C struct:__anoncbd29fa80108 typeref:typename:PetscScalar * file:
alpha src/ksp/ksp/impls/cg/gltr/gltrimpl.h /^ PetscReal *alpha; \/* Record of alpha values from CG *\/$/;" m language:C++ struct:__anon638eeb6c0108 typeref:typename:PetscReal *
alpha src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ PetscScalar *gamma, *delta, *alpha;$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:PetscScalar * file:
-alpha src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define alpha(/;" d language:C file:
+alpha src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define alpha(i) (plcg->alpha[/;" d language:C file:
alpha src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.h /^ PetscReal theta, rho, alpha, beta; \/* convex combination factors for the scalar or/;" m language:C++ struct:__anone64c62dc0108 typeref:typename:PetscReal
alpha src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h /^ PetscReal rho, alpha, beta; \/* convex combination factors for the/;" m language:C++ struct:__anon36afa2e40108 typeref:typename:PetscReal
alpha src/ksp/pc/impls/composite/composite.c /^ PetscScalar alpha;$/;" m language:C struct:__anonfe6f5a150108 typeref:typename:PetscScalar file:
@@ -42489,6 +42618,7 @@
argDB config/BuildSystem/config/compile/FC.py /^ argDB = property(args.ArgumentProcessor.getArgDB, setArgDB, doc = 'The RDict argument database/;" v language:Python class:Linker
argDB config/BuildSystem/config/compile/processor.py /^ argDB = property(args.ArgumentProcessor.getArgDB, setArgDB, doc = 'The RDict argument database/;" v language:Python class:Processor
argDB config/BuildSystem/script.py /^ argDB = property(args.ArgumentProcessor.getArgDB, setArgDB, doc = 'The RDict argument database/;" v language:Python class:LanguageProcessor
+args share/petsc/chkerrconvert.py /^ args = parser.parse_args()$/;" v language:Python
args src/benchmarks/benchmarkAssembly.py /^ args = parser.parse_args()$/;" v language:Python
args src/benchmarks/benchmarkExample.py /^ args = parser.parse_args()$/;" v language:Python
arnorm src/ksp/ksp/impls/lsqr/lsqr.c /^ PetscReal arnorm; \/* Good estimate of norm((A*inv(Pmat))'*r), where r = A*x - b, used in /;" m language:C struct:__anona88e468e0108 typeref:typename:PetscReal file:
@@ -42598,7 +42728,7 @@
augvecs_user_work src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^ Vec **augvecs_user_work; \/* same purpose as user_work above, but this one is$/;" m language:C++ struct:__anona6579ee20108 typeref:typename:Vec **
augwork_alloc src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h /^ PetscInt augwork_alloc; \/*size of chunk allocated for augmentation vectors *\/$/;" m language:C++ struct:__anona6579ee20108 typeref:typename:PetscInt
author src/binding/petsc4py/docs/source/conf.py /^author = u'Lisandro Dalcin'$/;" v language:Python
-auto_scale_max src/snes/impls/ntrdc/ntrdcimpl.h /^ PetscReal auto_scale_max; \/* max cap value for auto-scaling muste be > 1 *\/$/;" m language:C++ struct:__anon2e9410850108 typeref:typename:PetscReal
+auto_scale_max src/snes/impls/ntrdc/ntrdcimpl.h /^ PetscReal auto_scale_max; \/* max cap value for auto-scaling must be > 1 *\/$/;" m language:C++ struct:__anon2e9410850108 typeref:typename:PetscReal
auto_scale_multiphase src/snes/impls/ntrdc/ntrdcimpl.h /^ PetscBool auto_scale_multiphase; \/* flag to use\/not use autoscaling for Cauchy S&D for multi/;" m language:C++ struct:__anon2e9410850108 typeref:typename:PetscBool
aux include/petsc/private/petschpddm.h /^ Mat aux; \/* local auxiliary /;" m language:C++ struct:PC_HPDDM typeref:typename:Mat
aux src/mat/impls/aij/seq/essl/essl.c /^ PetscScalar *aux;$/;" m language:C struct:__anonf79f5eea0108 typeref:typename:PetscScalar * file:
@@ -42709,6 +42839,7 @@
balance include/petsc/private/partitionerimpl.h /^ PetscReal balance; \/* The maximum partition size divided by the minimum size *\/$/;" m language:C++ struct:_p_PetscPartitioner typeref:typename:PetscReal
ball_u_2d src/snes/tutorials/ex12.c /^static PetscErrorCode ball_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, /;" f language:C typeref:typename:PetscErrorCode file:
ball_u_3d src/snes/tutorials/ex12.c /^static PetscErrorCode ball_u_3d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, /;" f language:C typeref:typename:PetscErrorCode file:
+banner_length config/configure.py /^banner_length = 93$/;" v language:Python
bar src/sys/tests/ex33.c /^PetscErrorCode bar()$/;" f language:C typeref:typename:PetscErrorCode
barrier src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Comm-class.html /^ <td><span class="summary-sig"><a name="barrier"><\/a><span class="summary-sig-name">ba/;" a language:HTML
barrier src/sys/utils/mpishm.c /^ pthread_barrier_t *barrier; \/* pointer to the barrier *\/$/;" m language:C struct:_n_PetscOmpCtrl typeref:typename:pthread_barrier_t * file:
@@ -42883,7 +43014,7 @@
bigrhs src/tao/constrained/impls/ipm/ipm.h /^ Vec bigrhs; \/* rhs [x; lambdae; yi; lambdai] *\/$/;" m language:C++ struct:__anon1484705d0108 typeref:typename:Vec
bigstep src/tao/constrained/impls/ipm/ipm.h /^ Vec bigstep; \/* [dx; dyi; dlambdae; dlambdai] *\/$/;" m language:C++ struct:__anon1484705d0108 typeref:typename:Vec
bin src/tao/constrained/tutorials/maros.c /^ Vec beq, bin, d;$/;" m language:C struct:__anon904f00610108 typeref:typename:Vec file:
-binarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays becaue fftw/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
+binarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays because fft/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
binary src/dm/impls/plex/plexgmsh.c /^ PetscBool binary;$/;" m language:C struct:__anon4e7cf6b10308 typeref:typename:PetscBool file:
bindToCPU src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Mat-class.html /^ <td><span class="summary-sig"><a name="bindToCPU"><\/a><span class="summary-sig-name">/;" a language:HTML
bindToCPU src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Vec-class.html /^<a name="bindToCPU"><\/a>$/;" a language:HTML
@@ -42987,7 +43118,7 @@
boundtocpu include/petsc/private/matimpl.h /^ PetscBool boundtocpu;$/;" m language:C++ struct:_p_Mat typeref:typename:PetscBool
boundtocpu include/petsc/private/vecimpl.h /^ PetscBool boundtocpu;$/;" m language:C++ struct:_p_Vec typeref:typename:PetscBool
boundtocpu src/ksp/pc/impls/h2opus/pch2opus.c /^ PetscBool boundtocpu;$/;" m language:C struct:__anone859c2040108 typeref:typename:PetscBool file:
-boutarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays becaue fftw/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
+boutarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays because fft/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
bowl src/dm/impls/plex/tests/ex60.c /^static PetscErrorCode bowl(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, Petsc/;" f language:C typeref:typename:PetscErrorCode file:
bowners include/petsc/private/vecimpl.h /^ PetscInt *bowners;$/;" m language:C++ struct:__anon72f246960108 typeref:typename:PetscInt *
box src/vec/vec/utils/tagger/impls/simple.h /^ VecTaggerBox *box;$/;" m language:C++ struct:__anon096052330108 typeref:typename:VecTaggerBox *
@@ -43124,7 +43255,7 @@
c src/binding/petsc4py/docs/apiref/petsc4py.PETSc._Mat_Stencil-class.html /^ <a name="c"><\/a><span class="summary-name">c<\/span>$/;" a language:HTML
c src/mat/impls/lrc/lrc.c /^ Vec c; \/* sequential vector containing the diagonal of C *\/$/;" m language:C struct:__anon1ec7aaa30108 typeref:typename:Vec file:
c src/snes/tutorials/ex30.c /^ PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0, continuation;$/;" m language:C struct:__anon520d62eb0308 typeref:typename:PetscReal file:
-c src/sys/tutorials/ex5f90.F90 /^ ch/;" k language:Fortran type:bag_data_type
+c src/sys/tutorials/ex5f90.F90 /^ character*(80) :: c$/;" k language:Fortran type:bag_data_type
c src/tao/complementarity/tutorials/blackscholes.c /^ PetscReal *c; \/* Constant -- (r - D)S *\/$/;" m language:C struct:__anon02176f500108 typeref:typename:PetscReal * file:
c src/tao/constrained/tutorials/tomographyADMM.c /^ Vec c, xlb, xub, x, b, workM, workN, workN2, workN3, xGT; \/* observation b, ground trut/;" m language:C struct:__anon057d86c80108 typeref:typename:Vec file:
c src/tao/pde_constrained/tutorials/elliptic.c /^ Vec c; \/* constraint vector *\/$/;" m language:C struct:__anon6826b8cd0108 typeref:typename:Vec file:
@@ -43906,7 +44037,7 @@
coarsen_y include/petsc/private/dmdaimpl.h /^ PetscInt coarsen_x, coarsen_y, coarsen_z; \/* ratio used for coarsening *\/$/;" m language:C++ struct:__anona748a20e0108 typeref:typename:PetscInt
coarsen_z include/petsc/private/dmdaimpl.h /^ PetscInt coarsen_x, coarsen_y, coarsen_z; \/* ratio used for coarsening *\/$/;" m language:C++ struct:__anona748a20e0108 typeref:typename:PetscInt
coarsenhierarchy include/petsc/private/dmimpl.h /^ PetscErrorCode (*coarsenhierarchy)(DM, PetscInt, DM *);$/;" m language:C++ struct:_DMOps typeref:typename:PetscErrorCode (*)(DM,PetscInt,DM *)
-coarsenhook include/petsc/private/dmimpl.h /^ DMCoarsenHookLink coarsenhook; \/* For transfering auxiliary problem data to coarser gri/;" m language:C++ struct:_p_DM typeref:typename:DMCoarsenHookLink
+coarsenhook include/petsc/private/dmimpl.h /^ DMCoarsenHookLink coarsenhook; \/* For transferring auxiliary problem data to coarser gr/;" m language:C++ struct:_p_DM typeref:typename:DMCoarsenHookLink
coarsenhook include/petsc/private/dmimpl.h /^ PetscErrorCode (*coarsenhook)(DM, DM, void *); \/* Run once, when coarse DM is/;" m language:C++ struct:_DMCoarsenHookLink typeref:typename:PetscErrorCode (*)(DM,DM,void *)
coarsening_ratio include/petsc/private/pcbddcimpl.h /^ PetscInt coarsening_ratio;$/;" m language:C++ struct:__anon57f596d80108 typeref:typename:PetscInt
coarsentype src/ksp/pc/impls/hypre/hypre.c /^ PetscInt coarsentype;$/;" m language:C struct:__anona88fedbf0108 typeref:typename:PetscInt file:
@@ -44020,8 +44151,8 @@
comm src/ts/interface/tshistory.c /^ MPI_Comm comm; \/* used for runtime collective checks *\/$/;" m language:C struct:_n_TSHistory typeref:typename:MPI_Comm file:
comm src/ts/tests/ex10.c /^ MPI_Comm comm;$/;" m language:C struct:_p_TSDAESimple typeref:typename:MPI_Comm file:
comm src/ts/tests/ex12.c /^ MPI_Comm comm; \/* communicator *\/$/;" m language:C struct:__anon7ce7f5e50108 typeref:typename:MPI_Comm file:
-comm src/ts/tutorials/ex11.c /^ MPI_Comm comm; \/* Does not do collective communicaton, but some error conditions can /;" m language:C struct:_n_Model typeref:typename:MPI_Comm file:
-comm src/ts/tutorials/ex11_sa.c /^ MPI_Comm comm; \/* Does not do collective communicaton, but some error conditions can /;" m language:C struct:_n_Model typeref:typename:MPI_Comm file:
+comm src/ts/tutorials/ex11.c /^ MPI_Comm comm; \/* Does not do collective communication, but some error conditions can/;" m language:C struct:_n_Model typeref:typename:MPI_Comm file:
+comm src/ts/tutorials/ex11_sa.c /^ MPI_Comm comm; \/* Does not do collective communication, but some error conditions can/;" m language:C struct:_n_Model typeref:typename:MPI_Comm file:
comm src/ts/tutorials/ex2.c /^ MPI_Comm comm; \/* communicator *\/$/;" m language:C struct:__anon927378a80108 typeref:typename:MPI_Comm file:
comm src/ts/tutorials/ex21.c /^ MPI_Comm comm; \/* communicator *\/$/;" m language:C struct:__anone0e293f90108 typeref:typename:MPI_Comm file:
comm src/ts/tutorials/ex4.c /^ MPI_Comm comm; \/* communicator *\/$/;" m language:C struct:__anon9273812a0108 typeref:typename:MPI_Comm file:
@@ -44206,7 +44337,7 @@
condLimit src/dm/impls/plex/tutorials/ex9.c /^ PetscReal condLimit, tol; \/* Condition number limit for cell output *\/$/;" m language:C struct:__anon36f048550108 typeref:typename:PetscReal file:
cone include/petsc/private/dmplextransformimpl.h /^ PetscInt **cone; \/* The array of cones for each target cell *\/$/;" m language:C++ struct:__anonde903c7e0208 typeref:typename:PetscInt **
cone include/petsc/private/dmplextransformimpl.h /^ PetscInt **cone; \/* The array of cones for each target cell *\/$/;" m language:C++ struct:__anonde903c7e0808 typeref:typename:PetscInt **
-coneOrientations include/petsc/private/dmpleximpl.h /^ PetscInt *coneOrientations; \/* Orientation of each cone point, means cone traveral should /;" m language:C++ struct:__anon5b6c93620308 typeref:typename:PetscInt *
+coneOrientations include/petsc/private/dmpleximpl.h /^ PetscInt *coneOrientations; \/* Orientation of each cone point, means cone traversal should/;" m language:C++ struct:__anon5b6c93620308 typeref:typename:PetscInt *
coneSection include/petsc/private/dmpleximpl.h /^ PetscSection coneSection; \/* Layout of cones (inedges for DAG) *\/$/;" m language:C++ struct:__anon5b6c93620308 typeref:typename:PetscSection
coneq src/tao/interface/ftn-custom/ztaosolverf.c /^ PetscFortranCallbackId coneq;$/;" m language:C struct:__anonc4e9041e0108 typeref:typename:PetscFortranCallbackId file:
cones include/petsc/private/dmpleximpl.h /^ PetscInt *cones; \/* Cone for each point *\/$/;" m language:C++ struct:__anon5b6c93620308 typeref:typename:PetscInt *
@@ -44420,7 +44551,7 @@
configure_options config/examples/arch-ci-linux-gcc-pkgs-opt.py /^configure_options = [$/;" v language:Python
configure_options config/examples/arch-ci-linux-gcc-quad-64idx-dbg.py /^configure_options = [$/;" v language:Python
configure_options config/examples/arch-ci-linux-gcov.py /^configure_options = [$/;" v language:Python
-configure_options config/examples/arch-ci-linux-hip-double.py /^ configure_options = opts + [$/;" v language:Python
+configure_options config/examples/arch-ci-linux-hip-double.py /^ configure_options = [$/;" v language:Python
configure_options config/examples/arch-ci-linux-intel-cmplx.py /^ configure_options = [$/;" v language:Python
configure_options config/examples/arch-ci-linux-intel-mkl-single.py /^ configure_options = [$/;" v language:Python
configure_options config/examples/arch-ci-linux-intel.py /^ configure_options = [$/;" v language:Python
@@ -44615,6 +44746,7 @@
coords include/petscdm.h /^ Vec coords; \/* The point coordinates *\/$/;" m language:C++ struct:_DMInterpolationInfo typeref:typename:Vec
coords src/binding/petsc4py/demo/dmplex/anisotropic_adaptation.py /^ coords = plex.getCoordinatesLocal()$/;" v language:Python
coords src/binding/petsc4py/demo/dmplex/distribute_field.py /^ coords = np.asarray([[0.0, 0.0],$/;" v language:Python
+coords src/binding/petsc4py/demo/dmplex/distribute_field.py /^ coords = np.zeros((0, 2), dtype=PETSc.RealType)$/;" v language:Python
coords src/dm/impls/plex/tests/ex18.c /^ PetscScalar coords[128];$/;" m language:C struct:__anonb5719b110208 typeref:typename:PetscScalar[128] file:
coords src/ksp/pc/impls/fieldsplit/fieldsplit.c /^ PetscReal *coords;$/;" m language:C struct:_PC_FieldSplitLink typeref:typename:PetscReal * file:
coords src/ksp/pc/impls/h2opus/pch2opus.c /^ PetscReal *coords;$/;" m language:C struct:__anone859c2040108 typeref:typename:PetscReal * file:
@@ -45530,7 +45662,7 @@
delfiles config/install.py /^ delfiles=['RDict.db','RDict.log','buildsystem.log','default.log','buildsystem.log.bkp','defaul/;" v language:Python
delta src/ksp/ksp/impls/bcgsl/bcgslimpl.h /^ PetscReal delta; \/* Threshold for recomputing exact residual norm *\/$/;" m language:C++ struct:__anon5f183f170108 typeref:typename:PetscReal
delta src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ PetscScalar *gamma, *delta, *alpha;$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:PetscScalar * file:
-delta src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define delta(/;" d language:C file:
+delta src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define delta(i) (plcg->delta[/;" d language:C file:
delta src/ksp/ksp/impls/qcg/qcgimpl.h /^ PetscReal delta;$/;" m language:C++ struct:__anon49a6d6b70108 typeref:typename:PetscReal
delta src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.h /^ PetscReal delta, delta_min, delta_max, sigma, tol;$/;" m language:C++ struct:__anone64c62dc0108 typeref:typename:PetscReal
delta src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h /^ PetscReal delta, delta_min, delta_max, sigma;$/;" m language:C++ struct:__anon36afa2e40108 typeref:typename:PetscReal
@@ -45972,6 +46104,7 @@
directSolve src/ksp/pc/impls/wb/wb.c /^ PetscBool directSolve; \/* use direct LU factorization to construct interpolation *\/$/;" m language:C struct:__anonc9ff38a10108 typeref:typename:PetscBool file:
direction include/petsc/private/tsimpl.h /^ PetscInt *direction; \/* /;" m language:C++ struct:_n_TSEvent typeref:typename:PetscInt *
direction src/binding/petsc4py/demo/ode/bouncing_ball.py /^direction = [-1]$/;" v language:Python
+directory src/ts/tutorials/extchem.py /^ directory = 'Visualization-data'$/;" v language:Python
directory src/ts/tutorials/extchem.py /^ directory = sys.argv[1]$/;" v language:Python
dirfiletemplate include/petsc/private/tsimpl.h /^ char *dirfiletemplate; \/* complete directory and file name template for disk che/;" m language:C++ struct:_p_TSTrajectory typeref:typename:char *
dirichlet_scale src/snes/tutorials/ex48.c /^ PetscReal dirichlet_scale;$/;" m language:C struct:_p_THI typeref:typename:PetscReal file:
@@ -46074,7 +46207,7 @@
dm src/dm/impls/plex/tests/ex48f90.F90 /^ Type(tDM) :: dm$/;" v language:Fortran program:ex47f90
dm src/dm/impls/plex/tests/ex8.c /^ DM dm;$/;" m language:C struct:__anoncf3219a00208 typeref:typename:DM file:
dm src/dm/impls/stag/tests/ex18.c /^ DM dm;$/;" m language:C struct:__anon5346e5670108 typeref:typename:DM file:
-dm src/dm/label/tutorials/ex1f90.F90 /^ type(tDM) :: dm,/;" v language:Fortran program:ex1f90
+dm src/dm/label/tutorials/ex1f90.F90 /^ type(tDM) :: dm, dmD/;" v language:Fortran program:ex1f90
dm src/ksp/ksp/utils/dmproject.c /^ DM dm;$/;" m language:C struct:_projectConstraintsCtx typeref:typename:DM file:
dm src/mat/impls/nest/matnest.c /^ PetscInt *dm, *dn, k; \/* displacements and number of submatrices *\/$/;" m language:C struct:__anon043e07170108 typeref:typename:PetscInt * file:
dm src/snes/impls/vi/rs/virs.c /^ DM dm; \/* when destroying this object we need to reset the above function into the base DM *\/$/;" m language:C struct:__anond494ffcf0108 typeref:typename:DM file:
@@ -46409,6 +46542,7 @@
dmshellsetglobaltolocal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^PETSC_EXTERN void dmshellsetglobaltolocal_(DM *dm,void (*begin)(DM*,Vec*,InsertMode*,Vec*,PetscE/;" f language:C typeref:typename:PETSC_EXTERN void
dmshellsetlocaltoglobal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^#define dmshellsetlocaltoglobal_ /;" d language:C file:
dmshellsetlocaltoglobal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^PETSC_EXTERN void dmshellsetlocaltoglobal_(DM *dm,void (*begin)(DM*,Vec*,InsertMode*,Vec*,PetscE/;" f language:C typeref:typename:PETSC_EXTERN void
+dmshellsetlocaltolocal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^#define dmshellsetlocaltolocal_ dmshellsetlocaltolocal_$/;" d language:C file:
dmshellsetlocaltolocal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^#define dmshellsetlocaltolocal_ /;" d language:C file:
dmshellsetlocaltolocal_ src/dm/impls/shell/ftn-custom/zdmshellf.c /^PETSC_EXTERN void dmshellsetlocaltolocal_(DM *dm,void (*begin)(DM*,Vec*,InsertMode*,Vec*,PetscEr/;" f language:C typeref:typename:PETSC_EXTERN void
dmsnes include/petsc/private/dmimpl.h /^ PetscObject dmksp, dmsnes, dmts;$/;" m language:C++ struct:_p_DM typeref:typename:PetscObject
@@ -46570,7 +46704,7 @@
dscalefix2 include/petsc/private/kspimpl.h /^ PetscBool dscalefix2; \/* system has been unscaled *\/$/;" m language:C++ struct:_p_KSP typeref:typename:PetscBool
dsg_formed src/tao/pde_constrained/tutorials/parabolic.c /^ PetscBool jformed, dsg_formed;$/;" m language:C struct:__anon1342afe40108 typeref:typename:PetscBool file:
dshift src/mat/impls/shell/shell.c /^ Vec dshift;$/;" m language:C struct:__anonff7d65910108 typeref:typename:Vec file:
-dsp src/binding/petsc4py/conf/epydocify.py /^from epydoc import docstringparser as dsp$/;" x language:Python nameref:unknown:docstringparser
+dsp src/binding/petsc4py/conf/epydocify.py /^from epydoc import docstringparser as dsp$/;" Y language:Python nameref:unknown:docstringparser
dsteplength src/tao/quadratic/impls/bqpip/bqpipimpl.h /^ PetscReal dsteplength;$/;" m language:C++ struct:__anon040db59f0108 typeref:typename:PetscReal
dstrowoffset src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx /^ MatRowMapKokkosView srcrowoffset, dstrowoffset;$/;" m language:C++ struct:MatMatStruct_AtB typeref:typename:MatRowMapKokkosView file:
dt include/petscmat.h /^ PetscReal dt; \/* drop tolerance *\/$/;" m language:C++ struct:__anone65dad0f1008 typeref:typename:PetscReal
@@ -46757,7 +46891,6 @@
ellipticK src/ts/utils/dmplexlandau/land_tensors.h /^PETSC_DEVICE_FUNC_DECL void ellipticK(PetscReal x, PetscReal *ret)$/;" f language:C++ typeref:typename:PETSC_DEVICE_FUNC_DECL void
elms src/ksp/pc/impls/tfs/gs.c /^ PetscInt *elms; \/* of size nel *\/$/;" m language:C struct:gather_scatter_id typeref:typename:PetscInt * file:
elocal include/petsc/private/dmmbimpl.h /^ moab::Range *elocal, *eghost; \/* Topological dimensional entities: stri/;" m language:C++ struct:__anon42935ab80208 typeref:typename:moab::Range *
-else config/BuildSystem/script.py /^ else: useParallel = 5$/;" v language:Python typeref:typename:useParallel
emacsmachinename src/sys/objects/init.c /^static char emacsmachinename[256];$/;" v language:C typeref:typename:char[256] file:
emat include/petsc/private/petscelemental.h /^ El::DistMatrix<PetscElemScalar> *emat;$/;" m language:C++ struct:__anon04791b9c0108 typeref:typename:El::DistMatrix<PetscElemScalar> *
emax include/petsc/private/pcgamgimpl.h /^ PetscReal emin, emax;$/;" m language:C++ struct:gamg_TAG typeref:typename:PetscReal
@@ -47042,6 +47175,7 @@
eventresidual src/snes/impls/fas/fasimpls.h /^ PetscLogEvent eventresidual; \/* level residual evaluation *\/$/;" m language:C++ struct:__anonf37b11560108 typeref:typename:PetscLogEvent
eventrestrictinterp src/snes/impls/nasm/nasm.c /^ PetscLogEvent eventrestrictinterp;$/;" m language:C struct:__anon5c8da2560108 typeref:typename:PetscLogEvent file:
events include/petsclandau.h /^ PetscLogEvent events[20];$/;" m language:C++ struct:__anon8db14aa20408 typeref:typename:PetscLogEvent[20]
+events src/benchmarks/benchmarkAssembly.py /^ events = {}$/;" v language:Python
events src/benchmarks/benchmarkAssembly.py /^ events = savedTiming[args.saved]$/;" v language:Python
events src/benchmarks/benchmarkAssembly.py /^ events = {}$/;" v language:Python
events src/benchmarks/benchmarkExample.py /^ events = {}$/;" v language:Python
@@ -47193,7 +47327,7 @@
extraArguments config/BuildSystem/config/compile/SYCL.py /^ extraArguments = property(getExtraArguments, config.compile.processor.Processor.setExtraArgume/;" v language:Python class:Linker
extraArguments config/BuildSystem/config/compile/processor.py /^ extraArguments = property(getExtraArguments, setExtraArguments, doc = 'Optional arguments for /;" v language:Python class:Processor
extraCompilerFlags config/BuildSystem/config/setCompilers.py /^ def extraCompilerFlags(self, extraFlags, lang = None):$/;" m language:Python class:Configure
-extraLogs config/configure.py /^extraLogs = []$/;" v language:Python
+extraLogs config/configure.py /^extraLogs = []$/;" v language:Python
extra_args config/gmakegen.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
extra_args config/gmakegentest.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
extra_args config/testparse.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
@@ -47615,6 +47749,7 @@
fctx include/petsc/private/matimpl.h /^ void *fctx; \/* optional user-defined context for use by t/;" m language:C++ struct:_p_MatFDColoring typeref:typename:void *
fctx src/sys/utils/ftn-custom/zsortsof.c /^ void *fctx;$/;" m language:C struct:fc_c typeref:typename:void * file:
fctx src/ts/tests/ex10.c /^ void *fctx, *Fctx;$/;" m language:C struct:_p_TSDAESimple typeref:typename:void * file:
+fd config/install.py /^ fd = open(os.path.join('lib','petsc','conf','petscvariables'))$/;" v language:Python
fd include/petsc/private/dmimpl.h /^ MatFDColoring fd;$/;" m language:C++ struct:_p_DM typeref:typename:MatFDColoring
fd src/binding/petsc4py/demo/bratu3d/bratu3d.py /^fd = OptDB.getBool('fd', False)$/;" v language:Python
fd src/sys/classes/draw/impls/tikz/tikz.c /^ FILE *fd;$/;" m language:C struct:__anon60ea739c0108 typeref:typename:FILE * file:
@@ -47748,7 +47883,7 @@
finalize_options src/binding/petsc4py/conf/baseconf.py /^ def finalize_options(self):$/;" m language:Python class:build_src
finalize_options src/binding/petsc4py/conf/baseconf.py /^ def finalize_options(self):$/;" m language:Python class:test
finaljacobian src/snes/impls/nasm/nasm.c /^ PetscBool finaljacobian; \/* compute the jacobian of the converged solution *\/$/;" m language:C struct:__anon5c8da2560108 typeref:typename:PetscBool file:
-finarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays becaue fftw/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
+finarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays because fft/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
findArgument config/BuildSystem/nargs.py /^ def findArgument(key, argList):$/;" m language:Python class:Arg
findArgument config/BuildSystem/nargs.py /^ findArgument = staticmethod(findArgument)$/;" v language:Python class:Arg
findDistance src/ksp/ksp/tutorials/network/ex2.c /^PetscReal findDistance(PetscReal x1, PetscReal x2, PetscReal y1, PetscReal y2)$/;" f language:C typeref:typename:PetscReal
@@ -48017,7 +48152,7 @@
found config/BuildSystem/script.py /^ found = 1$/;" v language:Python
found config/BuildSystem/script.py /^ found = 0$/;" v language:Python
found config/PETSc/petsc.py /^ found = property(getFound, doc = 'Did we find a valid PETSc installation')$/;" v language:Python class:Configure
-foutarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays becaue fftw/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
+foutarray src/mat/impls/fft/fftw/fftw.c /^ PetscScalar *finarray, *foutarray, *binarray, *boutarray; \/* keep track of arrays because fft/;" m language:C struct:__anoncf43955e0108 typeref:typename:PetscScalar * file:
fp src/snes/interface/noise/snesnoise.c /^ FILE *fp; \/* output file *\/$/;" m language:C struct:__anon2717aab90108 typeref:typename:FILE * file:
fp_dm_field_scatter src/ksp/pc/impls/telescope/telescope_coarsedm.c /^ PetscErrorCode (*fp_dm_field_scatter)(DM, Vec, ScatterMode, DM, Vec);$/;" m language:C struct:__anon5bd67c040108 typeref:typename:PetscErrorCode (*)(DM,Vec,ScatterMode,DM,Vec) file:
fp_dm_state_scatter src/ksp/pc/impls/telescope/telescope_coarsedm.c /^ PetscErrorCode (*fp_dm_state_scatter)(DM, ScatterMode, DM);$/;" m language:C struct:__anon5bd67c040108 typeref:typename:PetscErrorCode (*)(DM,ScatterMode,DM) file:
@@ -48097,7 +48232,7 @@
func src/ts/tutorials/ex18.c /^ FunctionalFunc func;$/;" m language:C struct:_n_Functional typeref:typename:FunctionalFunc file:
func src/ts/tutorials/hamiltonian/ex2.c /^ PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void */;" m language:C struct:__anonbfb6066b0108 typeref:typename:PetscErrorCode (*)(PetscInt,PetscReal,const PetscReal[],PetscInt,PetscScalar *,void *) file:
func src/vec/vec/tutorials/ex18.c /^PetscScalar func(PetscScalar a)$/;" f language:C typeref:typename:PetscScalar
-func src/vec/vec/tutorials/ex18f.F90 /^ funct/;" f language:Fortran program:main
+func src/vec/vec/tutorials/ex18f.F90 /^ function func(/;" f language:Fortran program:main
func1 src/dm/dt/tests/ex3.c /^static void func1(const PetscReal a[], void *dummy, PetscReal *val)$/;" f language:C typeref:typename:void file:
func10 src/dm/dt/tests/ex3.c /^static void func10(const PetscReal a[], void *dummy, PetscReal *val)$/;" f language:C typeref:typename:void file:
func11 src/dm/dt/tests/ex3.c /^static void func11(const PetscReal a[], void *dummy, PetscReal *val)$/;" f language:C typeref:typename:void file:
@@ -48349,7 +48484,7 @@
gamma include/petsc/private/snesimpl.h /^ PetscReal gamma; \/* mult. factor for version 2 rtol computation *\/$/;" m language:C++ struct:__anonae3dae710108 typeref:typename:PetscReal
gamma src/dm/impls/plex/plexfem.c /^ PetscReal gamma; \/* The third Euler angle *\/$/;" m language:C struct:__anon4059c83a0108 typeref:typename:PetscReal file:
gamma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ PetscScalar *gamma, *delta, *alpha;$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:PetscScalar * file:
-gamma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define gamma(/;" d language:C file:
+gamma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define gamma(i) (plcg->gamma[/;" d language:C file:
gamma src/snes/impls/ms/ms.c /^ PetscReal *gamma; \/* Coefficients of 3S* method *\/$/;" m language:C struct:_SNESMSTableau typeref:typename:PetscReal * file:
gamma src/snes/tutorials/ex31.c /^ PetscReal gamma;$/;" m language:C struct:__anon520d672c0108 typeref:typename:PetscReal file:
gamma src/tao/constrained/impls/admm/admm.h /^ PetscReal gamma, last_misfit_val, last_reg_val, l1epsilon;$/;" m language:C++ struct:__anon8fbfb84f0108 typeref:typename:PetscReal
@@ -49305,8 +49440,9 @@
get_value config/query_tests.py /^def get_value(varset):$/;" f language:Python
get_version src/binding/petsc4py/docs/source/conf.py /^def get_version():$/;" f language:Python
getadaptivitysuccess include/petsc/private/dmforestimpl.h /^ PetscErrorCode (*getadaptivitysuccess)(DM, PetscBool *);$/;" m language:C++ struct:__anon640ca7fc0108 typeref:typename:PetscErrorCode (*)(DM,PetscBool *)
-getarg src/sys/objects/ftn-custom/zstart.c /^#define getarg /;" d language:C file:
+getarg src/sys/objects/ftn-custom/zstart.c /^#define getarg getarg_/;" d language:C file:
getarg_ src/sys/objects/ftn-custom/zstart.c /^#define getarg_ /;" d language:C file:
+getarg_ src/sys/objects/ftn-custom/zstart.c /^#define getarg_ pxfgetarg_$/;" d language:C file:
getarray include/petsc/private/vecimpl.h /^ PetscErrorCode (*getarray)(Vec, PetscScalar **); \/* get data array *\/$/;" m language:C++ struct:_VecOps typeref:typename:PetscErrorCode (*)(Vec,PetscScalar **)
getarray src/mat/impls/aij/seq/aij.h /^ PetscErrorCode (*getarray)(Mat, PetscScalar **);$/;" m language:C++ struct:__anon262276c60108 typeref:typename:PetscErrorCode (*)(Mat,PetscScalar **)
getarrayandmemtype include/petsc/private/vecimpl.h /^ PetscErrorCode (*getarrayandmemtype)(Vec, PetscScalar **, PetscMemType *);$/;" m language:C++ struct:_VecOps typeref:typename:PetscErrorCode (*)(Vec,PetscScalar **,PetscMemType *)
@@ -49552,6 +49688,8 @@
grid include/petsc/private/petscscalapack.h /^ Mat_ScaLAPACK_Grid *grid; \/* process grid *\/$/;" m language:C++ struct:__anon3c62f3480208 typeref:typename:Mat_ScaLAPACK_Grid *
grid src/benchmarks/benchmarkAssembly.py /^ grid = [100, 150, 200, 250, 300]$/;" v language:Python
grid src/benchmarks/benchmarkAssembly.py /^ grid = [10]*len(procs)$/;" v language:Python
+grid src/benchmarks/benchmarkAssembly.py /^ grid = [1250]*len(procs)$/;" v language:Python
+grid src/benchmarks/benchmarkAssembly.py /^ grid = range(150, 1350, 100)$/;" v language:Python
grid src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ gridinfo_t grid;$/;" m language:C struct:__anon0965ce5f0108 typeref:typename:gridinfo_t file:
grid src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ gridinfo_t grid;$/;" m language:C struct:__anon0965ce5f0208 typeref:typename:gridinfo_t file:
grid src/snes/tutorials/ex30.c /^ GridInfo *grid;$/;" m language:C struct:__anon520d62eb0508 typeref:typename:GridInfo * file:
@@ -50255,7 +50393,7 @@
help src/mat/tests/ex195.c /^static char help[] = " Demonstrate the use of MatConvert_Nest_AIJ\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex197.c /^static char help[] = "Test MatMultHermitianTranspose() and MatMultHermitianTransposeAdd().\\n\\n/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex198.c /^static char help[] = "Test MatMatMatMult\\n\\$/;" v language:C typeref:typename:char[] file:
-help src/mat/tests/ex199.c /^static char help[] = "Tests the different MatColoring implementatons.\\n\\n";$/;" v language:C typeref:typename:char[] file:
+help src/mat/tests/ex199.c /^static char help[] = "Tests the different MatColoring implementations.\\n\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex1k.kokkos.cxx /^static char help[] = "Benchmarking MatMult() with AIJ and its subclass matrix types\\n";$/;" v language:C++ typeref:typename:char[] file:
help src/mat/tests/ex2.c /^static char help[] = "Tests MatTranspose(), MatNorm(), MatAXPY() and MatAYPX().\\n\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex20.c /^static char help[] = "Tests converting a matrix to another format with MatConvert().\\n\\n";$/;" v language:C typeref:typename:char[] file:
@@ -50294,7 +50432,7 @@
help src/mat/tests/ex237.c /^static char help[] = "Mini-app to benchmark matrix--matrix multiplication\\n\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex238.c /^static char help[] = "Creates MatSeqBAIJ matrix of given BS for timing tests of MatMult().\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex239.c /^static char help[] = "Test device\/host memory allocation in MatDenseSeqCUDA()\\n\\n";$/;" v language:C typeref:typename:char[] file:
-help src/mat/tests/ex24.c /^static char help[] = "Tests the different MatColoring implementatons and ISColoringTestValid() \\/;" v language:C typeref:typename:char[] file:
+help src/mat/tests/ex24.c /^static char help[] = "Tests the different MatColoring implementations and ISColoringTestValid() /;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex240.c /^static char help[] = "Tests MatFDColoringSetValues()\\n\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex241.c /^static char help[] = "Tests MATHTOOL\\n\\n";$/;" v language:C typeref:typename:char[] file:
help src/mat/tests/ex242.c /^static char help[] = "Tests ScaLAPACK interface.\\n\\n";$/;" v language:C typeref:typename:char[] file:
@@ -50574,7 +50712,7 @@
help src/tao/bound/tutorials/plate2.c /^static char help[] = "This example demonstrates use of the TAO package to \\n\\$/;" v language:C typeref:typename:char[] file:
help src/tao/complementarity/tutorials/blackscholes.c /^static char help[] = "This example demonstrates use of the TAO package to\\n\\$/;" v language:C typeref:typename:char[] file:
help src/tao/complementarity/tutorials/minsurf1.c /^static char help[] = "This example demonstrates use of the TAO package to\\n\\$/;" v language:C typeref:typename:char[] file:
-help src/tao/constrained/tutorials/ex1.c /^static char help[] = "Solves constrained optimiztion problem using pdipm.\\n\\$/;" v language:C typeref:typename:char[] file:
+help src/tao/constrained/tutorials/ex1.c /^static char help[] = "Solves constrained optimization problem using pdipm.\\n\\$/;" v language:C typeref:typename:char[] file:
help src/tao/constrained/tutorials/maros.c /^static char help[] = "";$/;" v language:C typeref:typename:char[] file:
help src/tao/constrained/tutorials/tomographyADMM.c /^static char help[] = "Finds the ADMM solution to the under constraint linear model Ax = b, with /;" v language:C typeref:typename:char[] file:
help src/tao/leastsquares/tests/chwirut2.c /^static char help[] = "Finds the nonlinear least-squares solution to the model \\n\\$/;" v language:C typeref:typename:char[] file:
@@ -50991,7 +51129,7 @@
hmnull_constant src/ksp/pc/impls/hypre/hypre.c /^ Vec hmnull_constant;$/;" m language:C struct:__anona88fedbf0108 typeref:typename:Vec file:
hold include/petsc/private/drawimpl.h /^ PetscBool hold;$/;" m language:C++ struct:_p_PetscDrawAxis typeref:typename:PetscBool
hold src/sys/classes/viewer/impls/draw/vdraw.h /^ PetscBool hold; \/* Keep previous image when adding new *\/$/;" m language:C++ struct:__anon31c7ff130108 typeref:typename:PetscBool
-homogeneous src/snes/tutorials/ex13.c /^ PetscBool homogeneous; \/* Use homogeneous boudnary conditions *\/$/;" m language:C struct:__anon520c56ec0108 typeref:typename:PetscBool file:
+homogeneous src/snes/tutorials/ex13.c /^ PetscBool homogeneous; \/* Use homogeneous boundary conditions *\/$/;" m language:C struct:__anon520c56ec0108 typeref:typename:PetscBool file:
hopt_min src/snes/interface/noise/snesnoise.c /^ double hopt_min; \/* minimum allowable hopt *\/$/;" m language:C struct:__anon2717aab90108 typeref:typename:double file:
hopt_resets src/snes/interface/noise/snesnoise.c /^ PetscInt hopt_resets; \/* number of times we've reset the hopt estimate *\/$/;" m language:C struct:__anon2717aab90108 typeref:typename:PetscInt file:
horizontal include/petsc/private/viewerhdf5impl.h /^ PetscBool horizontal; \/* store column vectors as blocks (needed for MATDE/;" m language:C++ struct:__anon51ab41b10108 typeref:typename:PetscBool
@@ -51113,7 +51251,7 @@
ia src/mat/impls/aij/seq/essl/essl.c /^ int *ia;$/;" m language:C struct:__anonf79f5eea0108 typeref:typename:int * file:
ia src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c /^ INT_TYPE *ia, *ja;$/;" m language:C struct:__anon0a221be60108 typeref:typename:INT_TYPE * file:
ia_alloc src/mat/impls/aij/mpi/mumps/mumps.c /^ PetscMUMPSInt *ia_alloc, *ja_alloc; \/* work arrays used for the CSR struct for sparse rhs *\/$/;" m language:C struct:Mat_MUMPS typeref:typename:PetscMUMPSInt * file:
-iargc src/sys/objects/ftn-custom/zstart.c /^#define iargc /;" d language:C file:
+iargc src/sys/objects/ftn-custom/zstart.c /^#define iargc iargc_/;" d language:C file:
iargc_ src/sys/objects/ftn-custom/zstart.c /^#define iargc_ /;" d language:C file:
iarray src/sys/tutorials/ex5.c /^ PetscInt iarray[3];$/;" m language:C struct:__anon5ad51ec30308 typeref:typename:PetscInt[3] file:
ibdiag src/mat/impls/aij/seq/aij.h /^ MatScalar *bdiag, *ibdiag, *ssor_work; \/* diagonal blocks of matrix used for MatSOR_SeqAIJ_In/;" m language:C++ struct:__anon262276c60708 typeref:typename:MatScalar *
@@ -51982,7 +52120,7 @@
its src/ksp/pc/impls/hypre/hypre.c /^ PetscInt its;$/;" m language:C struct:__anona88fedbf0308 typeref:typename:PetscInt file:
its src/ksp/pc/impls/ksp/pcksp.c /^ PetscInt its; \/* total number of iterations KSP uses *\/$/;" m language:C struct:__anon89cf097e0108 typeref:typename:PetscInt file:
its src/ksp/pc/impls/sor/sor.c /^ PetscInt its; \/* inner iterations, number of sweeps *\/$/;" m language:C struct:__anonf2f7f4d70108 typeref:typename:PetscInt file:
-its0 src/snes/tutorials/ex3.c /^ PetscInt its0; \/* num of prevous outer KSP iterations *\/$/;" m language:C struct:__anonad27317b0408 typeref:typename:PetscInt file:
+its0 src/snes/tutorials/ex3.c /^ PetscInt its0; \/* num of previous outer KSP iterations *\/$/;" m language:C struct:__anonad27317b0408 typeref:typename:PetscInt file:
ivisc src/snes/tutorials/ex30.c /^ PetscInt ivisc, adv_scheme, ibound, output_ivisc;$/;" m language:C struct:__anon520d62eb0308 typeref:typename:PetscInt file:
iw src/sys/classes/random/impls/curand/curand2.cu /^ PetscReal il, iw;$/;" m language:C struct:complexscalelw typeref:typename:PetscReal file:
iwork src/ksp/ksp/guess/impls/pod/pod.c /^ PetscBLASInt *iwork; \/* integer work vector *\/$/;" m language:C struct:__anon302a3ee60108 typeref:typename:PetscBLASInt * file:
@@ -52172,7 +52310,7 @@
kernelSrc src/vec/vec/tests/ex56.c /^const char *kernelSrc = "\\n"$/;" v language:C typeref:typename:const char *
kev_joul src/ts/utils/dmplexlandau/tutorials/ex2.c /^static const PetscReal kev_joul = 6.241506479963235e+15; \/* 1\/1000e *\/$/;" v language:C typeref:typename:const PetscReal file:
key include/petsc/private/dmnetworkimpl.h /^ PetscInt *key; \/* component keys *\/$/;" m language:C++ struct:_p_DMNetworkComponentHeader typeref:typename:PetscInt *
-key src/dm/impls/plex/plexgmsh.c /^#define key(/;" d language:C file:
+key src/dm/impls/plex/plexgmsh.c /^#define key(eid) keym/;" d language:C file:
key src/sys/classes/random/impls/random123/random123.c /^ threefry4x64_key_t key;$/;" m language:C struct:_n_PetscRandom123 typeref:typename:threefry4x64_key_t file:
key src/sys/yaml/include/yaml.h /^ int key;$/;" m language:C++ struct:yaml_node_pair_s typeref:typename:int
keys config/BuildSystem/RDict.py /^ def keys(self):$/;" m language:Python class:RDict
@@ -52185,10 +52323,10 @@
kgrid src/snes/tutorials/ex12.c /^ PetscInt *kgrid; \/* Random parameter grid *\/$/;" m language:C struct:__anon520c52ab0408 typeref:typename:PetscInt * file:
kh src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx /^ KernelHandle kh;$/;" m language:C++ struct:MatMatStruct typeref:typename:KernelHandle file:
kh_begin include/petsc/private/khash/khash.h /^#define kh_begin(/;" d language:C++
-kh_clear include/petsc/private/khash/khash.h /^#define kh_clear(/;" d language:C++
+kh_clear include/petsc/private/khash/khash.h /^#define kh_clear(name, h) kh_clear_/;" d language:C++
kh_cstr_t include/petsc/private/khash/khash.h /^typedef const char *kh_cstr_t;$/;" t language:C++ typeref:typename:const char *
-kh_del include/petsc/private/khash/khash.h /^#define kh_del(/;" d language:C++
-kh_destroy include/petsc/private/khash/khash.h /^#define kh_destroy(/;" d language:C++
+kh_del include/petsc/private/khash/khash.h /^#define kh_del(name, h, k) kh_del_/;" d language:C++
+kh_destroy include/petsc/private/khash/khash.h /^#define kh_destroy(name, h) kh_destroy_/;" d language:C++
kh_end include/petsc/private/khash/khash.h /^#define kh_end(/;" d language:C++
kh_exist include/petsc/private/khash/khash.h /^#define kh_exist(/;" d language:C++
kh_foreach include/petsc/private/hashtable.h /^ #define kh_foreach(/;" d language:C++
@@ -52196,8 +52334,8 @@
kh_foreach_key include/petsc/private/hashtable.h /^ #define kh_foreach_key(/;" d language:C++
kh_foreach_value include/petsc/private/hashtable.h /^ #define kh_foreach_value(/;" d language:C++
kh_foreach_value include/petsc/private/khash/khash.h /^#define kh_foreach_value(/;" d language:C++
-kh_get include/petsc/private/khash/khash.h /^#define kh_get(/;" d language:C++
-kh_init include/petsc/private/khash/khash.h /^#define kh_init(/;" d language:C++
+kh_get include/petsc/private/khash/khash.h /^#define kh_get(name, h, k) kh_get_/;" d language:C++
+kh_init include/petsc/private/khash/khash.h /^#define kh_init(name) kh_init_/;" d language:C++
kh_inline include/petsc/private/hashtable.h /^#define kh_inline /;" d language:C++
kh_inline include/petsc/private/khash/khash.h /^#define kh_inline /;" d language:C++
kh_int64_hash_equal include/petsc/private/khash/khash.h /^#define kh_int64_hash_equal(/;" d language:C++
@@ -52207,9 +52345,9 @@
kh_int_hash_func2 include/petsc/private/khash/khash.h /^#define kh_int_hash_func2(/;" d language:C++
kh_key include/petsc/private/khash/khash.h /^#define kh_key(/;" d language:C++
kh_n_buckets include/petsc/private/khash/khash.h /^#define kh_n_buckets(/;" d language:C++
-kh_put include/petsc/private/khash/khash.h /^#define kh_put(/;" d language:C++
+kh_put include/petsc/private/khash/khash.h /^#define kh_put(name, h, k, r) kh_put_/;" d language:C++
kh_reset include/petsc/private/hashtable.h /^ #define kh_reset(/;" d language:C++
-kh_resize include/petsc/private/khash/khash.h /^#define kh_resize(/;" d language:C++
+kh_resize include/petsc/private/khash/khash.h /^#define kh_resize(name, h, s) kh_resize_/;" d language:C++
kh_size include/petsc/private/khash/khash.h /^#define kh_size(/;" d language:C++
kh_str_hash_equal include/petsc/private/khash/khash.h /^#define kh_str_hash_equal(/;" d language:C++
kh_str_hash_func include/petsc/private/khash/khash.h /^#define kh_str_hash_func(/;" d language:C++
@@ -52895,9 +53033,9 @@
localX src/snes/tutorials/ex10d/ex10.c /^ Vec localX, localF; \/* local solution (u) and f(u) vectors *\/$/;" m language:C struct:__anon7bee4a3a0108 typeref:typename:Vec file:
localX src/tao/bound/tutorials/plate2.c /^ Vec localX, localV; \/* ghosted local vector *\/$/;" m language:C struct:__anon7075aa250108 typeref:typename:Vec file:
localX src/tao/unconstrained/tutorials/eptorsion2.c /^ Vec localX; \/* local vectors *\/$/;" m language:C struct:__anon69df7e970108 typeref:typename:Vec file:
-localX src/ts/tutorials/network/wash.h /^ Vec localX, localXdot; \/* vectors used in local function evalutation *\/$/;" m language:C++ struct:_p_Wash typeref:typename:Vec
+localX src/ts/tutorials/network/wash.h /^ Vec localX, localXdot; \/* vectors used in local function evaluation *\/$/;" m language:C++ struct:_p_Wash typeref:typename:Vec
localX0 src/ts/tutorials/autodiff/adolc-utils/contexts.cxx /^ Vec localX0;$/;" m language:C++ struct:__anon7c878c320208 typeref:typename:Vec file:
-localXdot src/ts/tutorials/network/wash.h /^ Vec localX, localXdot; \/* vectors used in local function evalutation *\/$/;" m language:C++ struct:_p_Wash typeref:typename:Vec
+localXdot src/ts/tutorials/network/wash.h /^ Vec localX, localXdot; \/* vectors used in local function evaluation *\/$/;" m language:C++ struct:_p_Wash typeref:typename:Vec
localXold src/snes/tutorials/network/ex1.c /^ Vec localXold; \/* store previous solution, used by FormFunction_Dummy() *\/$/;" m language:C struct:__anon262d8d520108 typeref:typename:Vec file:
local_auxmat1 include/petsc/private/pcbddcimpl.h /^ Mat local_auxmat1;$/;" m language:C++ struct:__anon57f596d80108 typeref:typename:Mat
local_auxmat2 include/petsc/private/pcbddcimpl.h /^ Mat local_auxmat2;$/;" m language:C++ struct:__anon57f596d80108 typeref:typename:Mat
@@ -53829,7 +53967,6 @@
main src/mat/tutorials/ex4f.F90 /^program main$/;" p language:Fortran
main src/mat/tutorials/ex5cu.cu /^int main(int argc, char **args)$/;" f language:C typeref:typename:int
main src/mat/tutorials/ex5k.kokkos.cxx /^int main(int argc, char **argv)$/;" f language:C++ typeref:typename:int
-main src/mat/tutorials/ex6f.F90 /^ PROGRAM main$/;" p language:Fortran
main src/mat/tutorials/ex7.c /^int main(int argc, char **argv)$/;" f language:C typeref:typename:int
main src/mat/tutorials/ex8.c /^int main(int argc, char **args)$/;" f language:C typeref:typename:int
main src/mat/tutorials/ex9.c /^int main(int argc, char **args)$/;" f language:C typeref:typename:int
@@ -54802,7 +54939,7 @@
matsetoptionsprefix_ src/mat/interface/ftn-custom/zmatrixf.c /^PETSC_EXTERN void matsetoptionsprefix_(Mat *mat,char* prefix,PetscErrorCode *ierr,PETSC_FORTRAN_/;" f language:C typeref:typename:PETSC_EXTERN void
matsetpreallocationcoo32_ src/mat/ftn-custom/zmat.c /^#define matsetpreallocationcoo32_ /;" d language:C file:
matsetpreallocationcoo32_ src/mat/ftn-custom/zmat.c /^PETSC_EXTERN void matsetpreallocationcoo32_(Mat *A,int *ncoo, PetscInt coo_i[], PetscInt coo_j[/;" f language:C typeref:typename:PETSC_EXTERN void
-matsetpreallocationcoo64 src/mat/ftn-custom/zmat.c /^#define matsetpreallocationcoo64 /;" d language:C file:
+matsetpreallocationcoo64 src/mat/ftn-custom/zmat.c /^#define matsetpreallocationcoo64 matsetpreallocationcoo64$/;" d language:C file:
matsetpreallocationcoo64_ src/mat/ftn-custom/zmat.c /^#define matsetpreallocationcoo64_ /;" d language:C file:
matsetpreallocationcoo64_ src/mat/ftn-custom/zmat.c /^PETSC_EXTERN void matsetpreallocationcoo64_(Mat *A,PetscInt64 *ncoo, PetscInt coo_i[], PetscInt/;" f language:C typeref:typename:PETSC_EXTERN void
matsetpreallocationcoolocal32_ src/mat/ftn-custom/zmat.c /^#define matsetpreallocationcoolocal32_ /;" d language:C file:
@@ -55085,7 +55222,9 @@
mbiface include/petsc/private/dmmbimpl.h /^ moab::Interface *mbiface;$/;" m language:C++ struct:__anon42935ab80108 typeref:typename:moab::Interface *
mbs src/ksp/pc/impls/pbjacobi/pbjacobi.c /^ PetscInt bs, mbs;$/;" m language:C struct:__anona36798830108 typeref:typename:PetscInt file:
mc64ad_dist src/mat/order/wbm.c /^ #define mc64ad_dist /;" d language:C file:
+mc64ad_dist src/mat/order/wbm.c /^ #define mc64ad_dist mc64ad_dist$/;" d language:C file:
mc64id_dist src/mat/order/wbm.c /^ #define mc64id_dist /;" d language:C file:
+mc64id_dist src/mat/order/wbm.c /^ #define mc64id_dist mc64id_dist$/;" d language:C file:
mcVal src/sys/classes/random/tutorials/ex2.c /^PetscReal mcVal(PetscReal St, PetscReal r, PetscReal vol, PetscReal dt, PetscReal eps)$/;" f language:C typeref:typename:PetscReal
mdiag src/mat/impls/aij/seq/aij.h /^ PetscScalar *idiag, *mdiag, *ssor_work; \/* inverse of diagonal entries, diagonal values and w/;" m language:C++ struct:__anon262276c60808 typeref:typename:PetscScalar *
mdiag src/mat/impls/sell/seq/sell.h /^ PetscScalar *idiag, *mdiag, *ssor_work; \/* inverse of diagonal entries, diagonal values and w/;" m language:C++ struct:__anon5cae19de0108 typeref:typename:PetscScalar *
@@ -55150,6 +55289,7 @@
meter src/ts/tutorials/ex10.c /^ PetscReal meter, kilogram, second, Kelvin; \/* Fundamental units *\/$/;" m language:C struct:__anone0e203570608 typeref:typename:PetscReal file:
meter src/ts/tutorials/ex14.c /^ PetscReal meter;$/;" m language:C struct:_n_Units typeref:typename:PetscReal file:
meth src/binding/petsc4py/demo/wrap-swig/setup.py /^ meth = UnixCCompiler.runtime_library_dir_option$/;" v language:Python
+meth src/binding/petsc4py/demo/wrap-swig/setup.py /^ meth = UnixCCompiler.runtime_library_dir_option.im_func$/;" v language:Python
meth src/ksp/pc/impls/parms/parms.c /^ PetscBool nonsymperm, meth[8];$/;" m language:C struct:__anon120201350108 typeref:typename:PetscBool[8] file:
method src/ksp/ksp/guess/impls/fischer/fischer.c /^ PetscInt method; \/* 1, 2 or 3 *\/$/;" m language:C struct:__anoncbd29fa80108 typeref:typename:PetscInt file:
method src/vec/vec/utils/tagger/impls/cdf.c /^ VecTaggerCDFMethod method;$/;" m language:C struct:__anon70fc1cf10208 typeref:typename:VecTaggerCDFMethod file:
@@ -55389,7 +55529,7 @@
modType src/ts/tutorials/ex76.c /^ ModType modType; \/* Model type *\/$/;" m language:C struct:__anone0e567230408 typeref:typename:ModType file:
modTypes src/snes/tutorials/ex36.c /^const char *modTypes[NUM_MOD_TYPES + 1] = {"constant", "oscillatory", "tanh", "unknown"};$/;" v language:C typeref:typename:const char * []
modTypes src/ts/tutorials/ex76.c /^const char *modTypes[NUM_MOD_TYPES + 1] = {"incompressible", "conducting", "unknown"};$/;" v language:C typeref:typename:const char * []
-mod_egg_info src/binding/petsc4py/conf/baseconf.py /^ from setuptools.command import egg_info as mod_egg_info$/;" x language:Python nameref:unknown:egg_info
+mod_egg_info src/binding/petsc4py/conf/baseconf.py /^ from setuptools.command import egg_info as mod_egg_info$/;" Y language:Python nameref:unknown:egg_info
mod_rap2 src/ksp/pc/impls/hypre/hypre.c /^ PetscInt mod_rap2;$/;" m language:C struct:__anona88fedbf0108 typeref:typename:PetscInt file:
mode src/sys/classes/viewer/impls/ascii/asciiimpl.h /^ PetscFileMode mode; \/* The mode in which to open the file *\/$/;" m language:C++ struct:__anon63f65c250108 typeref:typename:PetscFileMode
mode src/sys/classes/viewer/impls/vu/petscvu.c /^ PetscFileMode mode; \/* The mode in which to open the file *\/$/;" m language:C struct:__anon976b1b710108 typeref:typename:PetscFileMode file:
@@ -55543,6 +55683,9 @@
mpi_get_count include/petsc/mpiuni/mpiunifdef.h /^#define mpi_get_count /;" d language:C++
mpi_get_processor_name include/petsc/mpiuni/mpiunifdef.h /^#define mpi_get_processor_name /;" d language:C++
mpi_init include/petsc/mpiuni/mpiunifdef.h /^#define mpi_init /;" d language:C++
+mpi_init_ src/sys/objects/ftn-custom/zstart.c /^#define mpi_init_ mpi_init__/;" d language:C file:
+mpi_init_ src/sys/objects/ftn-custom/zstart.c /^#define mpi_init_ petsc_mpi_init_$/;" d language:C file:
+mpi_init_ src/sys/objects/ftn-custom/zstart.c /^#define mpi_init_ petsc_mpi_init__/;" d language:C file:
mpi_init_ src/sys/objects/ftn-custom/zstart.c /^#define mpi_init_ /;" d language:C file:
mpi_initialized include/petsc/mpiuni/mpiunifdef.h /^#define mpi_initialized /;" d language:C++
mpi_iprobe include/petsc/mpiuni/mpiunifdef.h /^#define mpi_iprobe /;" d language:C++
@@ -55968,7 +56111,7 @@
n_alloc_icol src/mat/impls/aij/seq/bas/spbas.h /^ PetscInt n_alloc_icol;$/;" m language:C++ struct:__anon5dfed1d00108 typeref:typename:PetscInt
n_alloc_val src/mat/impls/aij/seq/bas/spbas.h /^ PetscInt n_alloc_val;$/;" m language:C++ struct:__anon5dfed1d00108 typeref:typename:PetscInt
n_bind src/tao/bound/impls/blmvm/blmvm.h /^ PetscInt n_bind;$/;" m language:C++ struct:__anon1bcee72b0108 typeref:typename:PetscInt
-n_bind src/tao/quadratic/impls/gpcg/gpcg.h /^ PetscInt n_bind; \/* Number of binding varibles *\/$/;" m language:C++ struct:__anon55a397970108 typeref:typename:PetscInt
+n_bind src/tao/quadratic/impls/gpcg/gpcg.h /^ PetscInt n_bind; \/* Number of binding variables *\/$/;" m language:C++ struct:__anon55a397970108 typeref:typename:PetscInt
n_cycles src/snes/impls/fas/fasimpls.h /^ PetscInt n_cycles; \/* number of cycles on this level *\/$/;" m language:C++ struct:__anonf37b11560108 typeref:typename:PetscInt
n_free src/tao/bound/impls/blmvm/blmvm.h /^ PetscInt n_free;$/;" m language:C++ struct:__anon1bcee72b0108 typeref:typename:PetscInt
n_free src/tao/bound/impls/tron/tron.h /^ PetscInt n_free; \/* Number of free variables *\/$/;" m language:C++ struct:__anon1cb16cb50108 typeref:typename:PetscInt
@@ -56207,6 +56350,7 @@
nevents include/petsc/private/tsimpl.h /^ PetscInt nevents; \/* /;" m language:C++ struct:_n_TSEvent typeref:typename:PetscInt
nevents_zero include/petsc/private/tsimpl.h /^ PetscInt nevents_zero; \/* /;" m language:C++ struct:_n_TSEvent typeref:typename:PetscInt
newMergeMethod src/dm/impls/moab/dmmbutil.cxx /^ bool newMergeMethod, keep_skins, simplex, adjEnts;$/;" m language:C++ struct:__anonf001d89d0108 typeref:typename:bool file:
+newSect src/binding/petsc4py/demo/dmplex/distribute_field.py /^ newSect = origSect$/;" v language:Python
newSect src/binding/petsc4py/demo/dmplex/distribute_field.py /^ newSect, newVec = plex.distributeField(sf, origSect, origVec)$/;" v language:Python
newVec src/binding/petsc4py/demo/dmplex/distribute_field.py /^ newSect, newVec = plex.distributeField(sf, origSect, origVec)$/;" v language:Python
newVec src/binding/petsc4py/demo/dmplex/distribute_field.py /^ newVec = origVec$/;" v language:Python
@@ -56214,9 +56358,9 @@
new_g include/petsc/private/taolinesearchimpl.h /^ Vec new_g;$/;" m language:C++ struct:_p_TaoLineSearch typeref:typename:Vec
new_inactives src/tao/bound/impls/bncg/bncg.h /^ IS active_lower, active_upper, active_fixed, active_idx, inactive_idx, inactive_old, new_inact/;" m language:C++ struct:__anon96145bc30108 typeref:typename:IS
new_left include/petscmatcoarsen.h /^ PetscInt new_left;$/;" m language:C++ struct:_PetscCoarsenData typeref:typename:PetscInt
-new_md5 config/BuildSystem/config/framework.py /^from hashlib import md5 as new_md5$/;" x language:Python nameref:unknown:md5
-new_md5 config/BuildSystem/config/package.py /^from hashlib import md5 as new_md5$/;" x language:Python nameref:unknown:md5
-new_md5 config/BuildSystem/sourceDatabase.py /^from hashlib import md5 as new_md5$/;" x language:Python nameref:unknown:md5
+new_md5 config/BuildSystem/config/framework.py /^from hashlib import md5 as new_md5$/;" Y language:Python nameref:unknown:md5
+new_md5 config/BuildSystem/config/package.py /^from hashlib import md5 as new_md5$/;" Y language:Python nameref:unknown:md5
+new_md5 config/BuildSystem/sourceDatabase.py /^from hashlib import md5 as new_md5$/;" Y language:Python nameref:unknown:md5
new_node include/petscmatcoarsen.h /^ PetscCDIntNd *new_node;$/;" m language:C++ struct:_PetscCoarsenData typeref:typename:PetscCDIntNd *
new_primal_space include/petsc/private/pcbddcimpl.h /^ PetscBool new_primal_space;$/;" m language:C++ struct:__anon57f596d80108 typeref:typename:PetscBool
new_primal_space_local include/petsc/private/pcbddcimpl.h /^ PetscBool new_primal_space_local;$/;" m language:C++ struct:__anon57f596d80108 typeref:typename:PetscBool
@@ -57326,7 +57470,7 @@
omp_comm_size src/mat/impls/aij/mpi/mumps/mumps.c /^ PetscMPIInt tag, omp_comm_size;$/;" m language:C struct:Mat_MUMPS typeref:typename:PetscMPIInt file:
omp_comm_size src/sys/utils/mpishm.c /^ PetscMPIInt omp_comm_size; \/* size of omp_comm, a kind of OMP_NUM_THREADS *\/$/;" m language:C struct:_n_PetscOmpCtrl typeref:typename:PetscMPIInt file:
omp_cpuset src/sys/utils/mpishm.c /^ hwloc_cpuset_t omp_cpuset; \/* union of cpu bindings of ranks in omp_comm *\/$/;" m language:C struct:_n_PetscOmpCtrl typeref:typename:hwloc_cpuset_t file:
-omp_ctrl src/mat/impls/aij/mpi/mumps/mumps.c /^ PetscOmpCtrl omp_ctrl; \/* an OpenMP controler that blocked processes will release/;" m language:C struct:Mat_MUMPS typeref:typename:PetscOmpCtrl file:
+omp_ctrl src/mat/impls/aij/mpi/mumps/mumps.c /^ PetscOmpCtrl omp_ctrl; \/* an OpenMP controller that blocked processes will releas/;" m language:C struct:Mat_MUMPS typeref:typename:PetscOmpCtrl file:
omp_master_comm src/sys/utils/mpishm.c /^ MPI_Comm omp_master_comm; \/* a communicator to give to third party libraries *\/$/;" m language:C struct:_n_PetscOmpCtrl typeref:typename:MPI_Comm file:
omp_win src/sys/utils/mpishm.c /^ MPI_Win omp_win; \/* a shared memory window containing a barrier *\/$/;" m language:C struct:_n_PetscOmpCtrl typeref:typename:MPI_Win file:
oncomm include/petsc/private/isimpl.h /^ PetscErrorCode (*oncomm)(IS, MPI_Comm, PetscCopyMode, IS *);$/;" m language:C++ struct:_ISOps typeref:typename:PetscErrorCode (*)(IS,MPI_Comm,PetscCopyMode,IS *)
@@ -57452,7 +57596,6 @@
optionsToString src/benchmarks/benchmarkExample.py /^ def optionsToString(self, **opts):$/;" m language:Python class:PETScExample
optionsprinted include/petsc/private/petscimpl.h /^ PetscBool optionsprinted;$/;" m language:C++ struct:_p_PetscObject typeref:typename:PetscBool
optprolongator include/petsc/private/pcgamgimpl.h /^ PetscErrorCode (*optprolongator)(PC, Mat, Mat *);$/;" m language:C++ struct:_PCGAMGOps typeref:typename:PetscErrorCode (*)(PC,Mat,Mat *)
-opts config/examples/arch-ci-linux-hip-double.py /^ opts = [$/;" v language:Python
opts config/gmakegen.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
opts config/gmakegentest.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
opts config/testparse.py /^ opts, extra_args = parser.parse_args()$/;" v language:Python
@@ -57708,14 +57851,14 @@
owner_ranges src/binding/petsc4py/docs/apiref/petsc4py.PETSc.Vec-class.html /^ <a name="owner_ranges"><\/a><span class="summary-name">owner_ranges<\/span>$/;" a language:HTML
owner_rank src/dm/impls/swarm/swarm_migrate.c /^ PetscMPIInt owner_rank;$/;" m language:C struct:__anon0b2ae56c0108 typeref:typename:PetscMPIInt file:
owners_co src/mat/impls/aij/mpi/mpiaij.h /^ PetscInt *owners_co, *coi, *coj; \/* i and j array of (p->B)^T*A*P - used in the communicat/;" m language:C++ struct:__anonf02c0c090108 typeref:typename:PetscInt *
-ownstring src/sys/classes/viewer/impls/string/stringv.c /^ PetscBool ownstring; \/* string viewer is responsable for freeing the string *\/$/;" m language:C struct:__anonc6cd78800108 typeref:typename:PetscBool file:
+ownstring src/sys/classes/viewer/impls/string/stringv.c /^ PetscBool ownstring; \/* string viewer is responsible for freeing the string *\/$/;" m language:C struct:__anonc6cd78800108 typeref:typename:PetscBool file:
owts src/mat/color/impls/jp/jp.c /^ PetscReal *dwts, *owts;$/;" m language:C struct:__anon0bf404230108 typeref:typename:PetscReal * file:
p include/petsc/private/dmdaimpl.h /^ PetscInt m, n, p; \/* processor layout *\/$/;" m language:C++ struct:__anona748a20e0108 typeref:typename:PetscInt
p include/petsc/private/dmpleximpl.h /^ PetscReal p; \/* Degree for L-p normalization methods *\/$/;" m language:C++ struct:__anon5b6c93620208 typeref:typename:PetscReal
p src/binding/petsc4py/demo/dmplex/anisotropic_adaptation.py /^p = 1.0 # L? normalization order$/;" v language:Python
p src/binding/petsc4py/src/__init__.py /^ import sys, os.path as p$/;" I language:Python function:get_config file: nameref:module:os.path
p src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ Vec p; \/* work vector *\/$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:Vec file:
-p src/ksp/ksp/impls/tcqmr/tcqmrimpl.h /^#define p /;" d language:C++
+p src/ksp/ksp/impls/tcqmr/tcqmrimpl.h /^#define p ksp-/;" d language:C++
p src/ksp/ksp/tutorials/ex59.c /^ PetscInt p;$/;" m language:C struct:__anond0ffa3680108 typeref:typename:PetscInt file:
p src/snes/tutorials/ex15.c /^ PetscReal p; \/* Exponent in p-Laplacian *\/$/;" m language:C struct:__anon520c5f6e0208 typeref:typename:PetscReal file:
p src/snes/tutorials/ex30.c /^ PetscScalar u, w, p, T;$/;" m language:C struct:__anon520d62eb0108 typeref:typename:PetscScalar file:
@@ -57831,7 +57974,7 @@
parseTests config/testparse.py /^def parseTests(testStr,srcfile,fileNums,verbosity):$/;" f language:Python
parseValue config/BuildSystem/nargs.py /^ def parseValue(arg):$/;" m language:Python class:Arg
parseValue config/BuildSystem/nargs.py /^ parseValue = staticmethod(parseValue)$/;" v language:Python class:Arg
-parse_makefile config/gmakegen.py /^from sysconfig import _parse_makefile as parse_makefile$/;" x language:Python nameref:unknown:_parse_makefile
+parse_makefile config/gmakegen.py /^from sysconfig import _parse_makefile as parse_makefile$/;" Y language:Python nameref:unknown:_parse_makefile
parser config/gmakegen.py /^ parser = optparse.OptionParser()$/;" v language:Python
parser config/gmakegentest.py /^ parser = optparse.OptionParser()$/;" v language:Python
parser config/testparse.py /^ parser = optparse.OptionParser()$/;" v language:Python
@@ -58272,7 +58415,7 @@
petsc_actions src/sys/logging/plog.c /^Action *petsc_actions = NULL;$/;" v language:C typeref:typename:Action *
petsc_allreduce_ct include/petsclog.h /^PETSC_EXTERN PetscLogDouble petsc_allreduce_ct;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogDouble
petsc_allreduce_ct src/sys/logging/plog.c /^PetscLogDouble petsc_allreduce_ct = 0.0; \/* The number of reductions *\/$/;" v language:C typeref:typename:PetscLogDouble
-petsc_arch config/configure.py /^petsc_arch = ''$/;" v language:Python
+petsc_arch config/configure.py /^petsc_arch = ''$/;" v language:Python
petsc_checkpointer_intensity src/sys/error/checkptr.c /^static PetscInt petsc_checkpointer_intensity = 1;$/;" v language:C typeref:typename:PetscInt file:
petsc_comm src/mat/impls/aij/mpi/mumps/mumps.c /^ MPI_Comm petsc_comm, omp_comm; \/* petsc_comm is petsc matrix's comm *\/$/;" m language:C struct:Mat_MUMPS typeref:typename:MPI_Comm file:
petsc_configure config/configure.py /^def petsc_configure(configure_options):$/;" f language:Python
@@ -58385,100 +58528,146 @@
petsc_maxActions src/sys/logging/plog.c /^int petsc_numActions = 0, petsc_maxActions = 100;$/;" v language:C typeref:typename:int
petsc_maxObjects include/petsc/private/logimpl.h /^PETSC_EXTERN int petsc_maxObjects;$/;" v language:C++ typeref:typename:PETSC_EXTERN int
petsc_maxObjects src/sys/logging/plog.c /^int petsc_numObjects = 0, petsc_maxObjects = 100;$/;" v language:C typeref:typename:int
+petsc_mpi_abort_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_abort_ petsc_mpi_abort__/;" d language:C file:
petsc_mpi_abort_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_abort_ /;" d language:C file:
petsc_mpi_abort_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_abort_(MPI_Comm *comm, int *errorcode, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_address_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_address_ petsc_mpi_address__/;" d language:C file:
petsc_mpi_address_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_address_ /;" d language:C file:
petsc_mpi_address_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_address_(void *location, MPI_Aint *address, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_allgather_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allgather_ petsc_mpi_allgather__/;" d language:C file:
petsc_mpi_allgather_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allgather_ /;" d language:C file:
petsc_mpi_allgather_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_allgather_(void *sendbuf, int *scount, int *sdatatype, void *recvbuf/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_allgatherv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allgatherv_ petsc_mpi_allgatherv__/;" d language:C file:
petsc_mpi_allgatherv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allgatherv_ /;" d language:C file:
petsc_mpi_allgatherv_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_allgatherv_(void *sendbuf, int *sendcount, int *sendtype, void *recv/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_allreduce_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allreduce_ petsc_mpi_allreduce__/;" d language:C file:
petsc_mpi_allreduce_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_allreduce_ /;" d language:C file:
petsc_mpi_allreduce_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_allreduce_(void *sendbuf, void *recvbuf, int *count, int *datatype, /;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_alltoallv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_alltoallv_ petsc_mpi_alltoallv__/;" d language:C file:
petsc_mpi_alltoallv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_alltoallv_ /;" d language:C file:
petsc_mpi_alltoallv_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_alltoallv_(void *sendbuf, int *sendcounts, int *sdispls, int *sendty/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_barrier_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_barrier_ petsc_mpi_barrier__/;" d language:C file:
petsc_mpi_barrier_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_barrier_ /;" d language:C file:
petsc_mpi_barrier_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_barrier_(MPI_Comm *comm, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_bcast_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_bcast_ petsc_mpi_bcast__/;" d language:C file:
petsc_mpi_bcast_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_bcast_ /;" d language:C file:
petsc_mpi_bcast_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_bcast_(void *buf, int *count, int *datatype, int *root, int *comm, i/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_cancel_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_cancel_ petsc_mpi_cancel__/;" d language:C file:
petsc_mpi_cancel_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_cancel_ /;" d language:C file:
petsc_mpi_cancel_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_cancel_(int *request, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_create_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_create_ petsc_mpi_comm_create__/;" d language:C file:
petsc_mpi_comm_create_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_create_ /;" d language:C file:
petsc_mpi_comm_create_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_create_(int *comm, int *group, int *newcomm, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_dup_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_dup_ petsc_mpi_comm_dup__/;" d language:C file:
petsc_mpi_comm_dup_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_dup_ /;" d language:C file:
petsc_mpi_comm_dup_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_dup_(int *comm, int *out, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_free_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_free_ petsc_mpi_comm_free__/;" d language:C file:
petsc_mpi_comm_free_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_free_ /;" d language:C file:
petsc_mpi_comm_free_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_free_(int *comm, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_group_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_group_ petsc_mpi_comm_group__/;" d language:C file:
petsc_mpi_comm_group_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_group_ /;" d language:C file:
petsc_mpi_comm_group_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_group_(int *comm, int *group, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_rank_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_rank_ petsc_mpi_comm_rank__/;" d language:C file:
petsc_mpi_comm_rank_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_rank_ /;" d language:C file:
petsc_mpi_comm_rank_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_rank_(MPI_Comm *comm, int *rank, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_size_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_size_ petsc_mpi_comm_size__/;" d language:C file:
petsc_mpi_comm_size_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_size_ /;" d language:C file:
petsc_mpi_comm_size_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_size_(MPI_Comm *comm, int *size, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_comm_split_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_split_ petsc_mpi_comm_split__/;" d language:C file:
petsc_mpi_comm_split_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_comm_split_ /;" d language:C file:
petsc_mpi_comm_split_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_comm_split_(MPI_Comm *comm, int *color, int *key, MPI_Comm *newcomm,/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_exscan_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_exscan_ petsc_mpi_exscan__/;" d language:C file:
petsc_mpi_exscan_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_exscan_ /;" d language:C file:
petsc_mpi_exscan_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_exscan_(void *sendbuf, void *recvbuf, int *count, int *datatype, int/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_finalize_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_finalize_ petsc_mpi_finalize__/;" d language:C file:
petsc_mpi_finalize_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_finalize_ /;" d language:C file:
petsc_mpi_finalize_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_finalize_(int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_gather_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_gather_ petsc_mpi_gather__/;" d language:C file:
petsc_mpi_gather_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_gather_ /;" d language:C file:
petsc_mpi_gather_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_gather_(void *sendbuf, int *scount, int *sdatatype, void *recvbuf, i/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_get_count_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_get_count_ petsc_mpi_get_count__/;" d language:C file:
petsc_mpi_get_count_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_get_count_ /;" d language:C file:
petsc_mpi_get_count_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_get_count_(int *status, int *datatype, int *count, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
petsc_mpi_get_processor_name_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_get_processor_name_ /;" d language:C file:
+petsc_mpi_get_processor_name_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_get_processor_name_ petsc_mpi_get_processor_name__/;" d language:C file:
petsc_mpi_get_processor_name_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_get_processor_name_(char *name, int *result_len, int *ierr, PETSC_FO/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_init_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_init_ petsc_mpi_init__/;" d language:C file:
petsc_mpi_init_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_init_ /;" d language:C file:
petsc_mpi_init_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_init_(int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_initialized_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_initialized_ petsc_mpi_initialized__/;" d language:C file:
petsc_mpi_initialized_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_initialized_ /;" d language:C file:
petsc_mpi_initialized_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_initialized_(int *flag, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_iprobe_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_iprobe_ petsc_mpi_iprobe__/;" d language:C file:
petsc_mpi_iprobe_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_iprobe_ /;" d language:C file:
petsc_mpi_iprobe_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_iprobe_(int *source, int *tag, int *comm, int *glag, int *status, in/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_irecv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_irecv_ petsc_mpi_irecv__/;" d language:C file:
petsc_mpi_irecv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_irecv_ /;" d language:C file:
petsc_mpi_irecv_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_irecv_(void *buf, int *count, int *datatype, int *source, int *tag, /;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_isend_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_isend_ petsc_mpi_isend__/;" d language:C file:
petsc_mpi_isend_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_isend_ /;" d language:C file:
petsc_mpi_isend_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_isend_(void *buf, int *count, int *datatype, int *dest, int *tag, in/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_pack_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_pack_ petsc_mpi_pack__/;" d language:C file:
petsc_mpi_pack_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_pack_ /;" d language:C file:
petsc_mpi_pack_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_pack_(void *inbuf, int *incount, int *datatype, void *outbuf, int *o/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_pack_size_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_pack_size_ petsc_mpi_pack_size__/;" d language:C file:
petsc_mpi_pack_size_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_pack_size_ /;" d language:C file:
petsc_mpi_pack_size_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_pack_size_(int *incount, int *datatype, int *comm, int *size, int *i/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_probe_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_probe_ petsc_mpi_probe__/;" d language:C file:
petsc_mpi_probe_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_probe_ /;" d language:C file:
petsc_mpi_probe_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_probe_(int *source, int *tag, int *comm, int *flag, int *status, int/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_recv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_recv_ petsc_mpi_recv__/;" d language:C file:
petsc_mpi_recv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_recv_ /;" d language:C file:
petsc_mpi_recv_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_recv_(void *buf, int *count, int *datatype, int *source, int *tag, i/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_reduce_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_reduce_ petsc_mpi_reduce__/;" d language:C file:
petsc_mpi_reduce_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_reduce_ /;" d language:C file:
petsc_mpi_reduce_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_reduce_(void *sendbuf, void *recvbuf, int *count, int *datatype, int/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_reduce_scatter_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_reduce_scatter_ petsc_mpi_reduce_scatter__/;" d language:C file:
petsc_mpi_reduce_scatter_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_reduce_scatter_ /;" d language:C file:
petsc_mpi_reduce_scatter_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_reduce_scatter_(void *sendbuf, void *recvbuf, int *recvcounts, int */;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_request_free_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_request_free_ petsc_mpi_request_free__/;" d language:C file:
petsc_mpi_request_free_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_request_free_ /;" d language:C file:
petsc_mpi_request_free_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_request_free_(int *request, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_scan_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_scan_ petsc_mpi_scan__/;" d language:C file:
petsc_mpi_scan_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_scan_ /;" d language:C file:
petsc_mpi_scan_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_scan_(void *sendbuf, void *recvbuf, int *count, int *datatype, int */;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_send_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_send_ petsc_mpi_send__/;" d language:C file:
petsc_mpi_send_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_send_ /;" d language:C file:
petsc_mpi_send_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_send_(void *buf, int *count, int *datatype, int *dest, int *tag, int/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_sendrecv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_sendrecv_ petsc_mpi_sendrecv__/;" d language:C file:
petsc_mpi_sendrecv_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_sendrecv_ /;" d language:C file:
petsc_mpi_sendrecv_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_sendrecv_(void *sendbuf, int *sendcount, int *sendtype, int *dest, i/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_ssend_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_ssend_ petsc_mpi_ssend__/;" d language:C file:
petsc_mpi_ssend_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_ssend_ /;" d language:C file:
petsc_mpi_ssend_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_ssend_(void *buf, int *count, int *datatype, int *dest, int *tag, in/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_test_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_test_ petsc_mpi_test__/;" d language:C file:
petsc_mpi_test_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_test_ /;" d language:C file:
petsc_mpi_test_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_test_(int *request, int *flag, int *status, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_type_commit_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_type_commit_ petsc_mpi_type_commit__/;" d language:C file:
petsc_mpi_type_commit_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_type_commit_ /;" d language:C file:
petsc_mpi_type_commit_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_type_commit_(int *datatype, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_type_struct_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_type_struct_ petsc_mpi_type_struct__/;" d language:C file:
petsc_mpi_type_struct_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_type_struct_ /;" d language:C file:
petsc_mpi_type_struct_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_type_struct_(int *count, int *array_of_blocklengths, int *array_of_d/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_unpack_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_unpack_ petsc_mpi_unpack__/;" d language:C file:
petsc_mpi_unpack_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_unpack_ /;" d language:C file:
petsc_mpi_unpack_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_unpack_(void *inbuf, int *insize, int *position, void *outbuf, int */;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_wait_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_wait_ petsc_mpi_wait__/;" d language:C file:
petsc_mpi_wait_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_wait_ /;" d language:C file:
petsc_mpi_wait_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_wait_(int *request, int *status, int *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_waitall_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_waitall_ petsc_mpi_waitall__/;" d language:C file:
petsc_mpi_waitall_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_waitall_ /;" d language:C file:
petsc_mpi_waitall_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_waitall_(int *count, int *array_of_requests, int *array_of_statuses,/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_waitany_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_waitany_ petsc_mpi_waitany__/;" d language:C file:
petsc_mpi_waitany_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_waitany_ /;" d language:C file:
petsc_mpi_waitany_ src/sys/mpiuni/mpi.c /^PETSC_EXTERN void petsc_mpi_waitany_(int *count, int *array_of_requests, int *index, int *status/;" f language:C typeref:typename:PETSC_EXTERN void
+petsc_mpi_wtime_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_wtime_ petsc_mpi_wtime__/;" d language:C file:
petsc_mpi_wtime_ src/sys/mpiuni/mpi.c /^ #define petsc_mpi_wtime_ /;" d language:C file:
petsc_mpi_wtime_ src/sys/mpiuni/mpi.c /^double petsc_mpi_wtime_(void)$/;" f language:C typeref:typename:double
petsc_mpiu_2int include/petscmath.h /^struct \/* __attribute__((packed, aligned(alignof(PetscInt *)))) *\/ petsc_mpiu_2int {$/;" s language:C++
petsc_mpiu_2scalar include/petscmath.h /^struct petsc_mpiu_2scalar {$/;" s language:C++
petsc_mpiu_real_int include/petscmath.h /^struct petsc_mpiu_real_int {$/;" s language:C++
petsc_mpiu_scalar_int include/petscmath.h /^struct petsc_mpiu_scalar_int {$/;" s language:C++
+petsc_null_function_ src/sys/objects/ftn-custom/zstartf.c /^#define petsc_null_function_ petsc_null_function__/;" d language:C file:
petsc_null_function_ src/sys/objects/ftn-custom/zstartf.c /^#define petsc_null_function_ /;" d language:C file:
petsc_null_function_ src/sys/objects/ftn-custom/zstartf.c /^PETSC_EXTERN void petsc_null_function_(void)$/;" f language:C typeref:typename:PETSC_EXTERN void
petsc_numActions include/petsc/private/logimpl.h /^PETSC_EXTERN int petsc_numActions;$/;" v language:C++ typeref:typename:PETSC_EXTERN int
@@ -58532,8 +58721,10 @@
petsc_tracetime include/petsc/private/logimpl.h /^PETSC_EXTERN PetscLogDouble petsc_tracetime;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogDouble
petsc_tracetime src/sys/logging/plog.c /^PetscLogDouble petsc_tracetime = 0.0;$/;" v language:C typeref:typename:PetscLogDouble
petsc_type src/dm/impls/swarm/data_bucket.h /^ PetscDataType petsc_type;$/;" m language:C++ struct:_p_DMSwarmDataField typeref:typename:PetscDataType
+petsc_viewer_draw__ src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c /^#define petsc_viewer_draw__ petsc_viewer_draw___/;" d language:C file:
petsc_viewer_draw__ src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c /^#define petsc_viewer_draw__ /;" d language:C file:
petsc_viewer_draw__ src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c /^PETSC_EXTERN PetscViewer petsc_viewer_draw__(MPI_Comm *comm)$/;" f language:C typeref:typename:PETSC_EXTERN PetscViewer
+petsc_viewer_stdout__ src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.c /^#define petsc_viewer_stdout__ petsc_viewer_stdout___/;" d language:C file:
petsc_viewer_stdout__ src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.c /^#define petsc_viewer_stdout__ /;" d language:C file:
petsc_viewer_stdout__ src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.c /^PETSC_EXTERN PetscViewer petsc_viewer_stdout__(MPI_Comm *comm)$/;" f language:C typeref:typename:PETSC_EXTERN PetscViewer
petsc_wait_all_ct include/petsclog.h /^PETSC_EXTERN PetscLogDouble petsc_wait_all_ct;$/;" v language:C++ typeref:typename:PETSC_EXTERN PetscLogDouble
@@ -59868,7 +60059,7 @@
r include/petsc/private/pcmgimpl.h /^ Vec r; \/* Residual *\/$/;" m language:C++ struct:__anon6718edff0108 typeref:typename:Vec
r include/petsc/private/petscconvestimpl.h /^ PetscReal r; \/* The refinement factor (spatial check requires r = 2) *\/$/;" m language:C++ struct:_p_PetscConvEst typeref:typename:PetscReal
r src/dm/impls/plex/tests/ex5.c /^static PetscErrorCode r(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscSca/;" f language:C typeref:typename:PetscErrorCode file:
-r src/ksp/ksp/impls/tcqmr/tcqmrimpl.h /^#define r /;" d language:C++
+r src/ksp/ksp/impls/tcqmr/tcqmrimpl.h /^#define r ksp->work/;" d language:C++
r src/ksp/ksp/impls/tsirm/tsirm.c /^ Vec Alpha, r;$/;" m language:C struct:__anon90e794c80108 typeref:typename:Vec file:
r src/ksp/ksp/tests/ex19.c /^ Vec x, b, r; \/* global vectors *\/$/;" m language:C struct:__anon24c1d9f00108 typeref:typename:Vec file:
r src/ksp/ksp/tests/ex26.c /^ Vec x, b, r; \/* global vectors *\/$/;" m language:C struct:__anon24c2598e0108 typeref:typename:Vec file:
@@ -60280,7 +60471,7 @@
reproduce include/petsc/private/matimpl.h /^ PetscBool reproduce;$/;" m language:C++ struct:_MatStash typeref:typename:PetscBool
reproduce_count include/petsc/private/matimpl.h /^ PetscInt reproduce_count;$/;" m language:C++ struct:_MatStash typeref:typename:PetscInt
req src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ MPI_Request *req; \/* request array for asynchronous global collective *\/$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:MPI_Request * file:
-req src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define req(/;" d language:C file:
+req src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define req(i) (plcg->req[/;" d language:C file:
req_iallreduce src/ksp/ksp/guess/impls/pod/pod.c /^ MPI_Request req_iallreduce;$/;" m language:C struct:__anon302a3ee60108 typeref:typename:MPI_Request file:
req_size include/petsc/private/matimpl.h /^ PetscInt *req_size, *req_source1, *req_source2;$/;" m language:C++ struct:__anonc62902da0a08 typeref:typename:PetscInt *
req_source1 include/petsc/private/matimpl.h /^ PetscInt *req_size, *req_source1, *req_source2;$/;" m language:C++ struct:__anonc62902da0a08 typeref:typename:PetscInt *
@@ -62728,12 +62919,12 @@
side include/petsc/private/tsimpl.h /^ PetscInt *side; \/* /;" m language:C++ struct:_n_TSEvent typeref:typename:PetscInt *
sig src/tao/constrained/impls/ipm/ipm.h /^ PetscScalar sig, mu, taumin, dec;$/;" m language:C++ struct:__anon1484705d0108 typeref:typename:PetscScalar
sigma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^ PetscReal *sigma; \/* base shifts *\/$/;" m language:C struct:KSP_CG_PIPE_L_s typeref:typename:PetscReal * file:
-sigma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define sigma(/;" d language:C file:
+sigma src/ksp/ksp/impls/cg/pipelcg/pipelcg.c /^#define sigma(i) (plcg->sigma[/;" d language:C file:
sigma src/ksp/ksp/tutorials/ex21.c /^ PetscReal sigma;$/;" m language:C struct:__anond0fddc3d0108 typeref:typename:PetscReal file:
sigma src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.h /^ PetscReal delta, delta_min, delta_max, sigma, tol;$/;" m language:C++ struct:__anone64c62dc0108 typeref:typename:PetscReal
sigma src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h /^ PetscReal delta, delta_min, delta_max, sigma;$/;" m language:C++ struct:__anon36afa2e40108 typeref:typename:PetscReal
-sigma src/snes/impls/ntrdc/ntrdcimpl.h /^ PetscReal sigma; \/* used to detemine termination *\/$/;" m language:C++ struct:__anon2e9410850108 typeref:typename:PetscReal
-sigma src/snes/impls/tr/trimpl.h /^ PetscReal sigma; \/* used to detemine termination *\/$/;" m language:C++ struct:__anon60d7eafb0108 typeref:typename:PetscReal
+sigma src/snes/impls/ntrdc/ntrdcimpl.h /^ PetscReal sigma; \/* used to determine termination *\/$/;" m language:C++ struct:__anon2e9410850108 typeref:typename:PetscReal
+sigma src/snes/impls/tr/trimpl.h /^ PetscReal sigma; \/* used to determine termination *\/$/;" m language:C++ struct:__anon60d7eafb0108 typeref:typename:PetscReal
sigma src/tao/complementarity/tutorials/blackscholes.c /^ PetscReal sigma, alpha, delta; \/* Underlying asset properties *\/$/;" m language:C struct:__anon02176f500108 typeref:typename:PetscReal file:
sigma src/tao/linesearch/impls/armijo/armijo.h /^ PetscReal sigma; \/* Acceptance criteria < 1) *\/$/;" m language:C++ struct:__anon9c9026f90108 typeref:typename:PetscReal
sigma src/tao/linesearch/impls/owarmijo/owarmijo.h /^ PetscReal sigma; \/* Acceptance criteria < 1) *\/$/;" m language:C++ struct:__anon2de167850108 typeref:typename:PetscReal
@@ -63005,8 +63196,8 @@
snesview_ src/snes/interface/ftn-custom/zsnesf.c /^PETSC_EXTERN void snesview_(SNES *snes,PetscViewer *viewer, PetscErrorCode *ierr)$/;" f language:C typeref:typename:PETSC_EXTERN void
snesviewfromoptions_ src/snes/interface/ftn-custom/zsnesf.c /^#define snesviewfromoptions_ /;" d language:C file:
snesviewfromoptions_ src/snes/interface/ftn-custom/zsnesf.c /^PETSC_EXTERN void snesviewfromoptions_(SNES *ao,PetscObject obj,char* type,PetscErrorCode *ierr,/;" f language:C typeref:typename:PETSC_EXTERN void
-snprintf src/sys/classes/viewer/impls/mathematica/mathematica.c /^ #define snprintf /;" d language:C file:
-snprintf src/sys/totalview/tv_data_display.c /^ #define snprintf /;" d language:C file:
+snprintf src/sys/classes/viewer/impls/mathematica/mathematica.c /^ #define snprintf _snprintf$/;" d language:C file:
+snprintf src/sys/totalview/tv_data_display.c /^ #define snprintf _snprintf$/;" d language:C file:
snumprocs src/vec/is/utils/ftn-custom/zisltogf.c /^static PetscInt *sprocs, *snumprocs, **sindices;$/;" v language:C typeref:typename:PetscInt * file:
sol include/petsc/private/pcbddcstructsimpl.h /^ Vec sol;$/;" m language:C++ struct:_PCBDDCReuseSolvers typeref:typename:Vec
sol src/ksp/pc/impls/amgx/amgx.cxx /^ AMGX_vector_handle sol;$/;" m language:C++ struct:PC_AMGX typeref:typename:AMGX_vector_handle file:
@@ -63118,8 +63309,6 @@
solver src/tao/pde_constrained/tutorials/elliptic.c /^ KSP solver;$/;" m language:C struct:__anon6826b8cd0108 typeref:typename:KSP file:
solver src/tao/pde_constrained/tutorials/hyperbolic.c /^ KSP solver;$/;" m language:C struct:__anon212d82280108 typeref:typename:KSP file:
solver src/tao/pde_constrained/tutorials/parabolic.c /^ KSP solver;$/;" m language:C struct:__anon1342afe40108 typeref:typename:KSP file:
-solver_context src/mat/tutorials/ex6f.F90 /^ MODULE solver_context$/;" m language:Fortran
-solver_context_interfaces src/mat/tutorials/ex6f.F90 /^ MODULE solver_context_interfaces$/;" m language:Fortran
solvertype include/petsc/private/matimpl.h /^ char *solvertype;$/;" m language:C++ struct:_p_Mat typeref:typename:char *
solvertype src/ksp/pc/impls/factor/factor.h /^ char *solvertype;$/;" m language:C++ struct:__anonb918d9f20108 typeref:typename:char *
solves include/petsc/private/matimpl.h /^ PetscErrorCode (*solves)(Mat, Vecs, Vecs);$/;" m language:C++ struct:_MatOps typeref:typename:PetscErrorCode (*)(Mat,Vecs,Vecs)
@@ -63166,6 +63355,7 @@
sound src/ts/tutorials/ex11.c /^ EquationOfState sound;$/;" m language:C struct:__anone0e207981008 typeref:typename:EquationOfState file:
sound src/ts/tutorials/ex11_sa.c /^ EquationOfState sound;$/;" m language:C struct:__anond54d1a4b0c08 typeref:typename:EquationOfState file:
source src/benchmarks/benchmarkExample.py /^ source = ex.petsc.source(args.library, args.num, '.cu')$/;" v language:Python
+source src/benchmarks/benchmarkExample.py /^ source = ex.petsc.source(args.library, args.num, 'OpenCL.c') # Using the convention of Open/;" v language:Python
source src/benchmarks/benchmarkExample.py /^ def source(self, library, num, filenametail):$/;" m language:Python class:PETSc
source src/snes/tutorials/ex15.c /^ PetscReal source; \/* Source term *\/$/;" m language:C struct:__anon520c5f6e0208 typeref:typename:PetscReal file:
source src/ts/tutorials/ex18.c /^ PetscReal source[3];$/;" m language:C struct:__anone0e2255f0308 typeref:typename:PetscReal[3] file:
@@ -63525,7 +63715,7 @@
stiffly_accurate src/ts/impls/implicit/glle/glle.h /^ PetscBool stiffly_accurate; \/* Last row of [A U] is equal t first row of [B V]? *\/$/;" m language:C++ struct:_TSGLLEScheme typeref:typename:PetscBool
stiffly_accurate src/ts/impls/implicit/irk/irk.c /^ PetscBool stiffly_accurate;$/;" m language:C struct:__anon6eccd73c0108 typeref:typename:PetscBool file:
stifflyaccurate include/petsc/private/tsimpl.h /^ PetscBool stifflyaccurate; \/* flag to indicate that the method is stiffly accurate *\/$/;" m language:C++ struct:_p_TS typeref:typename:PetscBool
-stoich src/ts/tutorials/ex27.c /^#define stoich(/;" d language:C file:
+stoich src/ts/tutorials/ex27.c /^#define stoich(i, j) ctx->stoichi/;" d language:C file:
stoichiometry src/ts/tutorials/ex27.c /^ PetscReal stoichiometry[N_SPECIES * N_REACTIONS];$/;" m language:C struct:__anone0e2ad7f0208 typeref:typename:PetscReal[] file:
stokes_identity_J_cx src/snes/tutorials/ex69.c /^static void stokes_identity_J_cx(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[/;" f language:C typeref:typename:void file:
stokes_identity_J_kx src/snes/tutorials/ex69.c /^static void stokes_identity_J_kx(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[/;" f language:C typeref:typename:void file:
@@ -64841,11 +65031,6 @@
trust include/petsc/private/taoimpl.h /^ PetscReal trust; \/* Current trust region *\/$/;" m language:C++ struct:_p_Tao typeref:typename:PetscReal
trust0 include/petsc/private/taoimpl.h /^ PetscReal trust0; \/* initial trust region radius *\/$/;" m language:C++ struct:_p_Tao typeref:typename:PetscReal
trust0_changed include/petsc/private/taoimpl.h /^ PetscBool trust0_changed;$/;" m language:C++ struct:_p_Tao typeref:typename:PetscBool
-try src/binding/petsc4py/demo/binary-io/matvecio.py /^try: range = xrange$/;" v language:Python typeref:typename:range
-try src/binding/petsc4py/demo/bratu3d/bratu3d.py /^try: range = xrange$/;" v language:Python typeref:typename:range
-try src/binding/petsc4py/demo/kspsolve/petsc-mat.py /^try: range = xrange$/;" v language:Python typeref:typename:range
-try src/binding/petsc4py/demo/poisson2d/poisson2d.py /^try: range = xrange$/;" v language:Python typeref:typename:range
-try src/binding/petsc4py/demo/taosolve/rosenbrock.py /^try: range = xrange$/;" v language:Python typeref:typename:range
ts include/petsc/private/tsimpl.h /^ TS ts;$/;" m language:C++ struct:_TS_RHSSplitLink typeref:typename:TS
ts src/binding/petsc4py/demo/ode/bouncing_ball.py /^ts = PETSc.TS().create(comm=ode.comm)$/;" v language:Python
ts src/binding/petsc4py/demo/ode/ce.py /^ts = PETSc.TS().create(comm=ode.comm)$/;" v language:Python
@@ -65256,8 +65441,8 @@
uright src/ts/tests/ex25.c /^ PetscReal uleft, uright; \/* Dirichlet boundary conditions *\/$/;" m language:C struct:_User typeref:typename:PetscReal file:
uright src/ts/tutorials/ex25.c /^ PetscReal uleft, uright; \/* Dirichlet boundary conditions *\/$/;" m language:C struct:_User typeref:typename:PetscReal file:
url src/binding/petsc4py/setup.py /^url = 'https:\/\/gitlab.com\/petsc\/petsc'$/;" v language:Python
-urlparse_local config/BuildSystem/nargs.py /^ from urllib import parse as urlparse_local$/;" x language:Python member:ArgDownload.setValue file: nameref:unknown:parse
-urlparse_local config/BuildSystem/retrieval.py /^from urllib import parse as urlparse_local$/;" x language:Python nameref:unknown:parse
+urlparse_local config/BuildSystem/nargs.py /^ from urllib import parse as urlparse_local$/;" Y language:Python member:ArgDownload.setValue file: nameref:unknown:parse
+urlparse_local config/BuildSystem/retrieval.py /^from urllib import parse as urlparse_local$/;" Y language:Python nameref:unknown:parse
use include/petsc/private/matimpl.h /^ PetscBool use; \/* indicates compressed rows have been checked and will be used *\/$/;" m language:C++ struct:__anonc62902da0408 typeref:typename:PetscBool
use src/mat/impls/aij/seq/aij.h /^ PetscBool use;$/;" m language:C++ struct:__anon262276c60708 typeref:typename:PetscBool
use3d src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c /^ PetscBool use3d;$/;" m language:C struct:__anon0965ce5f0108 typeref:typename:PetscBool file:
@@ -65920,6 +66105,7 @@
verbose src/tao/pde_constrained/impls/lcl/lcl.h /^ PetscBool verbose;$/;" m language:C++ struct:__anon5215f93f0108 typeref:typename:PetscBool
verbose src/ts/tutorials/ex14.c /^ PetscBool verbose;$/;" m language:C struct:_p_THI typeref:typename:PetscBool file:
verbose src/vec/vec/tests/ex48.c /^static PetscBool verbose = PETSC_FALSE;$/;" v language:C typeref:typename:PetscBool file:
+verbosity config/testparse.py /^ verbosity=int(opts.verbosity)$/;" v language:Python
verbosity include/petsc/private/dmpleximpl.h /^ PetscInt verbosity; \/* Level of verbosity for remesher (-1 = no output, 10 = m/;" m language:C++ struct:__anon5b6c93620208 typeref:typename:PetscInt
verify src/ts/impls/pseudo/posindep.c /^ PetscErrorCode (*verify)(TS, Vec, void *, PetscReal *, PetscBool *); \/* verify previous times/;" m language:C struct:__anonde15d5580108 typeref:typename:PetscErrorCode (*)(TS,Vec,void *,PetscReal *,PetscBool *) file:
verifyctx src/ts/impls/pseudo/posindep.c /^ void *verifyctx;$/;" m language:C struct:__anonde15d5580108 typeref:typename:void * file:
@@ -66720,7 +66906,7 @@
y src/ts/impls/implicit/sundials/sundials.h /^ N_Vector y; \/* current solution *\/$/;" m language:C++ struct:__anon88a5ab3b0108 typeref:typename:N_Vector
y src/ts/tutorials/ex36A.c /^ const PetscScalar *y, *ydot;$/;" v language:C typeref:typename:const PetscScalar *
y src/ts/tutorials/ex36SE.c /^ const PetscScalar *y, *ydot;$/;" v language:C typeref:typename:const PetscScalar *
-y src/vec/vec/tutorials/ex20f90.F90 /^ typ/;" v language:Fortran program:main
+y src/vec/vec/tutorials/ex20f90.F90 /^ type(tVec) x,y,/;" v language:Fortran program:main
y0 src/ksp/pc/impls/lsc/lsc.c /^ Vec x0, y0, x1;$/;" m language:C struct:__anonf171e8330108 typeref:typename:Vec file:
y0 src/tao/constrained/impls/admm/admm.h /^ Vec residual, y, yold, y0, yhat, yhatold, constraint;$/;" m language:C++ struct:__anon8fbfb84f0108 typeref:typename:Vec
yGErr src/ts/impls/glee/glee.c /^ Vec yGErr; \/* Vector holding the global error after a step is completed *\/$/;" m language:C struct:__anon7c9415a00108 typeref:typename:Vec file:
@@ -66996,7 +67182,7 @@
z src/tao/constrained/impls/admm/admm.h /^ Vec z, zold, Ax, Bz, Axold, Bzold, Bz0;$/;" m language:C++ struct:__anon8fbfb84f0108 typeref:typename:Vec
z src/tao/constrained/impls/ipm/pdipm.h /^ Vec z; \/* R^nci - vector, shares local arrays with X *\/$/;" m language:C++ struct:__anon4617a7f10108 typeref:typename:Vec
z src/ts/tests/ex3.c /^ PetscScalar *z; \/* array of grid points *\/$/;" m language:C struct:__anon591e55750108 typeref:typename:PetscScalar * file:
-z src/ts/tutorials/ex9.c /^ PetscReal z; \/* impedence: z = sqrt(rho*bulk) *\/$/;" m language:C struct:__anon9273966f0708 typeref:typename:PetscReal file:
+z src/ts/tutorials/ex9.c /^ PetscReal z; \/* impedance: z = sqrt(rho*bulk) *\/$/;" m language:C struct:__anon9273966f0708 typeref:typename:PetscReal file:
z src/vec/vec/tutorials/ex20f90.F90 /^ type(tVec), pointer :: z(/;" v language:Fortran program:main
zGL src/ksp/ksp/tutorials/ex59.c /^ PetscReal *zGL;$/;" m language:C struct:__anond0ffa3680208 typeref:typename:PetscReal * file:
zJI src/tao/constrained/impls/admm/admm.h /^ PetscBool xJI, zJI; \/* Bool to check whether A,B Jacobians are NULL-se/;" m language:C++ struct:__anon8fbfb84f0108 typeref:typename:PetscBool
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/debian/changelog petsc-3.18.5+dfsg1/debian/changelog
--- petsc-3.18.4+dfsg1/debian/changelog 2023-02-05 10:46:17.000000000 +0100
+++ petsc-3.18.5+dfsg1/debian/changelog 2023-03-05 15:16:00.000000000 +0100
@@ -1,3 +1,9 @@
+petsc (3.18.5+dfsg1-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons at debian.org> Sun, 05 Mar 2023 15:16:00 +0100
+
petsc (3.18.4+dfsg1-1) unstable; urgency=medium
* New upstream release.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/finclude/petscdmda.h petsc-3.18.5+dfsg1/include/petsc/finclude/petscdmda.h
--- petsc-3.18.4+dfsg1/include/petsc/finclude/petscdmda.h 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/finclude/petscdmda.h 2023-02-27 23:11:05.000000000 +0100
@@ -14,7 +14,7 @@
#define DMDALocalInfo PetscInt
!
-! DMDA_LOCAL_INFO_SIZE is one large than the size incase the DA is larger than an integer (on 64 bit systems).
+! DMDA_LOCAL_INFO_SIZE is one larger than the size in case the DA is larger than an integer (on 64 bit systems).
! non-int fields are not accessible from Fortran.
!
#define DMDA_LOCAL_INFO_SIZE 25
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/cupmblasinterface.hpp petsc-3.18.5+dfsg1/include/petsc/private/cupmblasinterface.hpp
--- petsc-3.18.4+dfsg1/include/petsc/private/cupmblasinterface.hpp 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/cupmblasinterface.hpp 2023-02-27 23:11:05.000000000 +0100
@@ -142,7 +142,7 @@
// MACRO_SUFFIX - suffix to one of the above blas function builder macros, e.g. STANDARD or
// IFPTYPE
// our_suffix - the suffix of the alias function
- // their_suffix - the suffix of the funciton being aliased
+ // their_suffix - the suffix of the function being aliased
//
// notes:
// requires PETSC_CUPMBLAS_PREFIX to be defined as the specific CUDA/HIP blas function
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/cupminterface.hpp petsc-3.18.5+dfsg1/include/petsc/private/cupminterface.hpp
--- petsc-3.18.4+dfsg1/include/petsc/private/cupminterface.hpp 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/cupminterface.hpp 2023-02-27 23:11:05.000000000 +0100
@@ -631,7 +631,7 @@
// cannot dereference (i.e. cannot call PetscValidPointer() here)
PetscCheck(dest, PETSC_COMM_SELF, PETSC_ERR_POINTER, "Trying to copy to a NULL pointer");
PetscCheck(src, PETSC_COMM_SELF, PETSC_ERR_POINTER, "Trying to copy from a NULL pointer");
- // do early return after nullptr check since we need to check that they arent both nullptrs
+ // do early return after nullptr check since we need to check that they are not both nullptrs
if (PetscUnlikely(dest == src)) PetscFunctionReturn(0);
if (kind == cupmMemcpyHostToHost) {
// If we are HTOH it is cheaper to check if the stream is idle and do a basic mempcy()
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/dmimpl.h petsc-3.18.5+dfsg1/include/petsc/private/dmimpl.h
--- petsc-3.18.4+dfsg1/include/petsc/private/dmimpl.h 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/dmimpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -250,7 +250,7 @@
/* Hierarchy / Submeshes */
DM coarseMesh;
DM fineMesh;
- DMCoarsenHookLink coarsenhook; /* For transfering auxiliary problem data to coarser grids */
+ DMCoarsenHookLink coarsenhook; /* For transferring auxiliary problem data to coarser grids */
DMRefineHookLink refinehook;
DMSubDomainHookLink subdomainhook;
DMGlobalToLocalHookLink gtolhook;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/dmnetworkimpl.h petsc-3.18.5+dfsg1/include/petsc/private/dmnetworkimpl.h
--- petsc-3.18.4+dfsg1/include/petsc/private/dmnetworkimpl.h 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/dmnetworkimpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -134,7 +134,7 @@
DMNetworkComponentHeader header;
DMNetworkComponentValue cvalue;
DMNetworkComponentGenericDataType *componentdataarray; /* Array to hold the data */
- PetscBool componentsetup; /* Flag for the setup of the component. Migth differ from dmsetup information */
+ PetscBool componentsetup; /* Flag for the setup of the component. Might differ from dmsetup information */
PetscInt max_comps_registered; /* Max. number of components that can be registered */
PetscBool userEdgeJacobian, userVertexJacobian; /* Global flag for using user's sub Jacobians */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/dmpleximpl.h petsc-3.18.5+dfsg1/include/petsc/private/dmpleximpl.h
--- petsc-3.18.4+dfsg1/include/petsc/private/dmpleximpl.h 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/dmpleximpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -126,7 +126,7 @@
PetscSection coneSection; /* Layout of cones (inedges for DAG) */
PetscInt *cones; /* Cone for each point */
- PetscInt *coneOrientations; /* Orientation of each cone point, means cone traveral should start on point 'o', and if negative start on -(o+1) and go in reverse */
+ PetscInt *coneOrientations; /* Orientation of each cone point, means cone traversal should start on point 'o', and if negative start on -(o+1) and go in reverse */
PetscSection supportSection; /* Layout of cones (inedges for DAG) */
PetscInt *supports; /* Cone for each point */
PetscInt *facesTmp; /* Work space for faces operation */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petsc/private/petscimpl.h petsc-3.18.5+dfsg1/include/petsc/private/petscimpl.h
--- petsc-3.18.4+dfsg1/include/petsc/private/petscimpl.h 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petsc/private/petscimpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -919,11 +919,11 @@
This routine is logically collective because state equality comparison needs to be possible without communication.
- `Mat` also has `MatGetNonzeroState()` and `MatSetNonzeroState()` for tracking changes to the nonzero structure.
+ `Mat` also has `MatGetNonzeroState()` for tracking changes to the nonzero structure.
Level: developer
-.seealso: `PetscObjectStateGet()`, `MatSetNonzeroState()`, `PetscObject`
+.seealso: `PetscObjectStateGet()`, `PetscObject`
M*/
#define PetscObjectStateIncrease(obj) ((obj)->state++, 0)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petscdmstag.h petsc-3.18.5+dfsg1/include/petscdmstag.h
--- petsc-3.18.4+dfsg1/include/petscdmstag.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/include/petscdmstag.h 2023-02-27 23:11:05.000000000 +0100
@@ -7,17 +7,18 @@
/* SUBMANSEC = DMStag */
/*E
- DMStagStencilLocation - enumerated type denoted a location relative to an element in a `DMSTAG` grid
+ DMStagStencilLocation - enumerated type denoting a location relative to an element in a `DMSTAG` grid
The interpretation of these values is dimension-dependent.
Level: beginner
-.seealso: `DMSTAG`, `DMStagStencil`, `DMStagGetLocationSlot()`
-E*/
+ Developer Note:
+ The order of the enum entries is significant, as it corresponds to the canonical numbering
+ of DOFs, and the fact that the numbering starts at 0 may also be used by the implementation.
-/* The order of these entries is significant, as it corresponds to the canonical numbering
- of DOFs, and the fact the the numbering starts at 0 may also be used by the implementation */
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencil`, `DMStagGetLocationSlot()`, `DMStagStencilType`
+E*/
typedef enum {
DMSTAG_NULL_LOCATION = 0,
DMSTAG_BACK_DOWN_LEFT,
@@ -62,7 +63,8 @@
Level: beginner
-.seealso: `DMSTAG`, `DMStagMatSetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagStencilLocation`, `DMStagSetStencilWidth()`, `DMStagSetStencilType()`, `DMStagVecGetValuesStencil()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagMatSetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagStencilLocation`, `DMStagSetStencilWidth()`,
+ `DMStagSetStencilType()`, `DMStagVecGetValuesStencil()`, `DMStagStencilLocation`
S*/
typedef struct {
DMStagStencilLocation loc;
@@ -74,7 +76,7 @@
Level: beginner
-.seealso: `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMStagStencil`, `DMDAStencilType`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMStagStencil`, `DMDAStencilType`, `DMStagStencilLocation`
E*/
typedef enum {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/include/petscversion.h petsc-3.18.5+dfsg1/include/petscversion.h
--- petsc-3.18.4+dfsg1/include/petscversion.h 2023-01-31 07:04:21.000000000 +0100
+++ petsc-3.18.5+dfsg1/include/petscversion.h 2023-02-27 23:31:40.000000000 +0100
@@ -5,16 +5,16 @@
#define PETSC_VERSION_RELEASE 1
#define PETSC_VERSION_MAJOR 3
#define PETSC_VERSION_MINOR 18
-#define PETSC_VERSION_SUBMINOR 4
+#define PETSC_VERSION_SUBMINOR 5
#define PETSC_RELEASE_DATE "Sep 30, 2022"
-#define PETSC_VERSION_DATE "Jan 30, 2023"
+#define PETSC_VERSION_DATE "Feb 27, 2023"
#if !defined(PETSC_VERSION_GIT)
-#define PETSC_VERSION_GIT "v3.18.4"
+#define PETSC_VERSION_GIT "v3.18.5"
#endif
#if !defined(PETSC_VERSION_DATE_GIT)
-#define PETSC_VERSION_DATE_GIT "2023-01-30 23:18:46 -0600"
+#define PETSC_VERSION_DATE_GIT "2023-02-27 16:07:45 -0600"
#endif
#define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/lib/petsc/bin/petsc_tas_analysis.py petsc-3.18.5+dfsg1/lib/petsc/bin/petsc_tas_analysis.py
--- petsc-3.18.4+dfsg1/lib/petsc/bin/petsc_tas_analysis.py 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/lib/petsc/bin/petsc_tas_analysis.py 2023-02-27 23:11:05.000000000 +0100
@@ -6,7 +6,7 @@
import datetime as date
import importlib
-# Check to ensure that the enviromental variable PETSC_DIR has been assigned.
+# Check to ensure that the environmental variable PETSC_DIR has been assigned.
# MPLCONFIGDIR is needed for matplotlib
try:
if os.environ.get('PETSC_DIR') is None:
@@ -14,7 +14,7 @@
os.environ['MPLCONFIGDIR'] = os.environ.get(
'PETSC_DIR')+'/share/petsc/xml/'
except NotADirectoryError:
- sys.exit('The enviromental variable PETSC_DIR was not found. \n'
+ sys.exit('The environmental variable PETSC_DIR was not found.\n'
'Please add this variable with the base directory for PETSc or the base directory that MPLCONFIGDIR resides')
import matplotlib.pyplot as plt
@@ -124,7 +124,7 @@
def checkAlias(alias, path):
"""
This function checks to see if the alias to be added/updated, entered on the command line, already exits
- in configureTAS.py. In configureTAS.py the alias is the key in the Dicionary filePath. If that key exists
+ in configureTAS.py. In configureTAS.py the alias is the key in the Dictionary filePath. If that key exists
The current key value pair is displayed and the user is prompted to confirm replacement. The function
returns True or False based on the user response.
@@ -184,7 +184,7 @@
print('Directory successfully created.\n')
return True
except os.error:
- print(f'\nAn error occured while attempting to create directory:\n{path}\n\n'
+ print(f'\nAn error occurred while attempting to create directory:\n{path}\n\n'
f'Please check to make sure that you have permission to create directories\n\n'
f'Do you with to continue with adding {path} to configureTAS.py?')
response = input('(y/n) to continue\n')
@@ -257,7 +257,7 @@
def getFiles(cmdLineArgs, alias):
"""
- This function first determins if it should look in the pathway specifed in filePath['defaultData']
+ This function first determines if it should look in the pathway specified in filePath['defaultData']
in the configurationTAS.py file or a file name given as a command line argument using -f or -file.
It then builds lists of file names and stores them in a dictionary, where they keys correspond to
the type of file, ie, module(ASCII type) or CSV.
@@ -472,7 +472,7 @@
if cmdLineArgs.fieldList is not None:
if len(cmdLineArgs.fieldList) != Nf:
print(f'\nYou specified {len(cmdLineArgs.fieldList)} from the command line, while the log file has {Nf} fields.\n\n'
- f'The fields you specifed were:\n{cmdLineArgs.fieldList}\n\n')
+ f'The fields you specified were:\n{cmdLineArgs.fieldList}\n\n')
response = input('(y/n) to continue without field names\n')
@@ -742,7 +742,7 @@
This function takes the supplied dictionary and plots the data from each file on the Mesh Convergence, Static Scaling, and
Efficacy graphs.
- :param file: Contains the data to be ploted on the graphs, assumes the format -- file[<file name>][<data type>]:<numpy array>
+ :param file: Contains the data to be plotted on the graphs, assumes the format -- file[<file name>][<data type>]:<numpy array>
:type file: Dictionary
:param graph_flops_scaling: Controls creating the scaling graph that uses flops/second. The default is not to. This option
is specified on the command line.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/lib/petsc/conf/test petsc-3.18.5+dfsg1/lib/petsc/conf/test
--- petsc-3.18.4+dfsg1/lib/petsc/conf/test 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/lib/petsc/conf/test 2023-02-27 23:11:05.000000000 +0100
@@ -14,7 +14,7 @@
ifneq ($(KOKKOS_USE_CUDA_COMPILER),)
# Kokkos requires nvcc to be in PATH and the C++ compiler to be given in an environmental variable
# We prefer to use the Kokkos nvcc_wrapper compiler wrapper for compiling Kokkos files. The command is adapted from PETSC_COMPILE.kokkos.cxx
- # in gmakefile.test, with additional "-o $*.o" to generate intended foo.o intead of foo.kokkos.o
+ # in gmakefile.test, with additional "-o $*.o" to generate intended foo.o instead of foo.kokkos.o
PETSC_KOKKOSCOMPILE_SINGLE = PATH=`dirname $(CUDAC)`:$(PATH) NVCC_WRAPPER_DEFAULT_COMPILER="$(CUDA_CXX)" $(KOKKOS_BIN)/nvcc_wrapper --expt-extended-lambda -c $(CUDAC_FLAGS) ${PETSC_CCPPFLAGS} $(CUDACPPFLAGS) $(CUDA_CXXFLAGS) $(MPICXX_INCLUDES) -o $*.o
LINK.kokkos.cxx = PATH=`dirname $(CUDAC)`:$(PATH) NVCC_WRAPPER_DEFAULT_COMPILER=$(CUDA_CXX) $(KOKKOS_BIN)/nvcc_wrapper --expt-extended-lambda $(CUDAC_FLAGS) $(MPICXX_INCLUDES) ${PETSC_CCPPFLAGS} $(CUDA_CXXFLAGS) $(CUDACPPFLAGS) $(CUDA_CXXLIBS) $(MPICXX_LIBS) $(LDFLAGS)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/share/petsc/matlab/launch.m petsc-3.18.5+dfsg1/share/petsc/matlab/launch.m
--- petsc-3.18.4+dfsg1/share/petsc/matlab/launch.m 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/share/petsc/matlab/launch.m 2023-02-27 23:11:05.000000000 +0100
@@ -21,7 +21,7 @@
%
% to run parallel jobs make sure petscmpiexec is in your path
-% with the particular PETSC_ARCH environmental varable set
+% with the particular PETSC_ARCH environmental variable set
%command = ['petscmpiexec -np ' int2str(np) ' ' program opt ' &'];
command = [ program opt ' &'];
fprintf(1,['Executing: ' command])
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/share/petsc/matlab/UFgetPetscMat.m petsc-3.18.5+dfsg1/share/petsc/matlab/UFgetPetscMat.m
--- petsc-3.18.4+dfsg1/share/petsc/matlab/UFgetPetscMat.m 2022-06-29 08:00:07.000000000 +0200
+++ petsc-3.18.5+dfsg1/share/petsc/matlab/UFgetPetscMat.m 2023-02-27 23:11:05.000000000 +0100
@@ -26,7 +26,7 @@
disp (Problem) ;
title (sprintf ('%s:%s', Problem.name, Problem.title')) ;
- % convets to PETSc binary format and writes into ~mat/A_{id}
+ % converts to PETSc binary format and writes into ~mat/A_{id}
%-----------------------------------------------------------
fname = ['mat/A',num2str(i)];
fprintf ('write matrix into petsc binary file %s ...\n',fname);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/share/petsc/saws/js/drawDiagrams.js petsc-3.18.5+dfsg1/share/petsc/saws/js/drawDiagrams.js
--- petsc-3.18.4+dfsg1/share/petsc/saws/js/drawDiagrams.js 2022-06-29 08:00:07.000000000 +0200
+++ petsc-3.18.5+dfsg1/share/petsc/saws/js/drawDiagrams.js 2023-02-27 23:11:05.000000000 +0100
@@ -106,7 +106,7 @@
var top_shift = shift + 141;
ret += "<line x1=\""+(x+shift)+"\" y1=\""+(y+141+global_downshift)+"\" x2=\""+(x+top_shift)+"\" y2=\""+(y+global_downshift)+"\" style='stroke:black;stroke-width:1'></line>";
}
- for(var j=1; j<dim; j++) {//draw horizonal lines
+ for(var j=1; j<dim; j++) {//draw horizontal lines
var inc = 141/dim;//parallelogram is 141 tall
var horiz_shift = (141/dim) * j;
var horiz_shift_end = horiz_shift + 324;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/dt/dualspace/interface/dualspace.c petsc-3.18.5+dfsg1/src/dm/dt/dualspace/interface/dualspace.c
--- petsc-3.18.4+dfsg1/src/dm/dt/dualspace/interface/dualspace.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/dt/dualspace/interface/dualspace.c 2023-02-27 23:11:05.000000000 +0100
@@ -2070,7 +2070,7 @@
Notes:
Functions transform in a complementary way (pushforward) to functionals, so that the scalar product is invariant. The type of transform is dependent on the associated k-simplex from the DeRahm complex.
- This only handles tranformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension.
+ This only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension.
.seealso: `PetscDualSpace`, `PetscDualSpacePushforward()`, `PetscDualSpaceTransform()`, `PetscDualSpaceGetDeRahm()`
@*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/dt/fv/interface/fv.c petsc-3.18.5+dfsg1/src/dm/dt/fv/interface/fv.c
--- petsc-3.18.4+dfsg1/src/dm/dt/fv/interface/fv.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/dt/fv/interface/fv.c 2023-02-27 23:11:05.000000000 +0100
@@ -1688,7 +1688,7 @@
Input Parameters:
+ fvm - The `PetscFV` object for the field being integrated
-. prob - The `PetscDS` specifing the discretizations and continuum functions
+. prob - The `PetscDS` specifying the discretizations and continuum functions
. field - The field being integrated
. Nf - The number of faces in the chunk
. fgeom - The face geometry for each face in the chunk
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/dt/interface/dtprob.c petsc-3.18.5+dfsg1/src/dm/dt/interface/dtprob.c
--- petsc-3.18.4+dfsg1/src/dm/dt/interface/dtprob.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/dt/interface/dtprob.c 2023-02-27 23:11:05.000000000 +0100
@@ -494,7 +494,7 @@
}
/*@C
- PetscProbCreateFromOptions - Return the probability distribution specified by the argumetns and options
+ PetscProbCreateFromOptions - Return the probability distribution specified by the arguments and options
Not collective
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/dt/interface/ftn-auto/makefile petsc-3.18.5+dfsg1/src/dm/dt/interface/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/dm/dt/interface/ftn-auto/makefile 2023-01-31 07:00:47.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/dt/interface/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = dtf.c dtaltvf.c dtprobf.c dtweakformf.c dtdsf.c
+SOURCEC = dtf.c dtaltvf.c dtweakformf.c dtdsf.c dtprobf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90 2023-02-27 23:28:35.000000000 +0100
@@ -173,20 +173,6 @@
PetscReal c ! PetscReal
PetscErrorCode z
end subroutine DMDASetGLLCoordinates
- subroutine DMDAGetReducedDMDA(a,b,c,z)
- import tDM
- DM a ! DM
- PetscInt b ! PetscInt
- DM c ! DM
- PetscErrorCode z
- end subroutine DMDAGetReducedDMDA
- subroutine DMDACreateCompatibleDMDA(a,b,c,z)
- import tDM
- DM a ! DM
- PetscInt b ! PetscInt
- DM c ! DM
- PetscErrorCode z
- end subroutine DMDACreateCompatibleDMDA
subroutine DMDACreate(a,b,z)
import tDM
MPI_Comm a ! MPI_Comm
@@ -194,7 +180,7 @@
PetscErrorCode z
end subroutine DMDACreate
subroutine DMDACreatePatchIS(a,b,c,d,e,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
MatStencil b ! MatStencil
MatStencil c ! MatStencil
@@ -208,13 +194,6 @@
Vec b ! Vec
PetscErrorCode z
end subroutine DMDACreateNaturalVector
- subroutine DMDAConvertToCell(a,b,c,z)
- import tDM
- DM a ! DM
- MatStencil b ! MatStencil
- PetscInt c ! PetscInt
- PetscErrorCode z
- end subroutine DMDAConvertToCell
subroutine DMDAGetElementsCorners(a,b,c,d,z)
import tDM
DM a ! DM
@@ -244,49 +223,17 @@
PetscErrorCode z
end subroutine DMDAGetElementType
subroutine DMDAGetSubdomainCornersIS(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
end subroutine DMDAGetSubdomainCornersIS
subroutine DMDARestoreSubdomainCornersIS(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
end subroutine DMDARestoreSubdomainCornersIS
- subroutine DMDAGlobalToNaturalBegin(a,b,c,d,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- InsertMode c ! InsertMode
- Vec d ! Vec
- PetscErrorCode z
- end subroutine DMDAGlobalToNaturalBegin
- subroutine DMDAGlobalToNaturalEnd(a,b,c,d,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- InsertMode c ! InsertMode
- Vec d ! Vec
- PetscErrorCode z
- end subroutine DMDAGlobalToNaturalEnd
- subroutine DMDANaturalToGlobalBegin(a,b,c,d,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- InsertMode c ! InsertMode
- Vec d ! Vec
- PetscErrorCode z
- end subroutine DMDANaturalToGlobalBegin
- subroutine DMDANaturalToGlobalEnd(a,b,c,d,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- InsertMode c ! InsertMode
- Vec d ! Vec
- PetscErrorCode z
- end subroutine DMDANaturalToGlobalEnd
subroutine DMDAGlobalToNaturalAllCreate(a,b,z)
import tDM,tVecScatter
DM a ! DM
@@ -305,20 +252,6 @@
AO b ! AO
PetscErrorCode z
end subroutine DMDAGetAO
- subroutine DMCreateAggregates(a,b,c,z)
- import tMat,tDM
- DM a ! DM
- DM b ! DM
- Mat c ! Mat
- PetscErrorCode z
- end subroutine DMCreateAggregates
- subroutine DMDACreateAggregates(a,b,c,z)
- import tMat,tDM
- DM a ! DM
- DM b ! DM
- Mat c ! Mat
- PetscErrorCode z
- end subroutine DMDACreateAggregates
subroutine DMDAGetNumCells(a,b,c,d,e,z)
import tDM
DM a ! DM
@@ -364,7 +297,7 @@
PetscErrorCode z
end subroutine DMDAGetLogicalCoordinate
subroutine DMDAGetRay(a,b,c,d,e,z)
- import tVecScatter,tDM,tVec
+ import tDM,tVec,tVecScatter
DM a ! DM
DMDirection b ! DMDirection
PetscInt c ! PetscInt
@@ -397,3 +330,70 @@
PetscReal g ! PetscReal
PetscErrorCode z
end subroutine DMDASetUniformCoordinates
+ subroutine DMDAGetReducedDMDA(a,b,c,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ DM c ! DM
+ PetscErrorCode z
+ end subroutine DMDAGetReducedDMDA
+ subroutine DMDACreateCompatibleDMDA(a,b,c,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ DM c ! DM
+ PetscErrorCode z
+ end subroutine DMDACreateCompatibleDMDA
+ subroutine DMDAConvertToCell(a,b,c,z)
+ import tDM
+ DM a ! DM
+ MatStencil b ! MatStencil
+ PetscInt c ! PetscInt
+ PetscErrorCode z
+ end subroutine DMDAConvertToCell
+ subroutine DMDAGlobalToNaturalBegin(a,b,c,d,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ InsertMode c ! InsertMode
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine DMDAGlobalToNaturalBegin
+ subroutine DMDAGlobalToNaturalEnd(a,b,c,d,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ InsertMode c ! InsertMode
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine DMDAGlobalToNaturalEnd
+ subroutine DMDANaturalToGlobalBegin(a,b,c,d,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ InsertMode c ! InsertMode
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine DMDANaturalToGlobalBegin
+ subroutine DMDANaturalToGlobalEnd(a,b,c,d,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ InsertMode c ! InsertMode
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine DMDANaturalToGlobalEnd
+ subroutine DMCreateAggregates(a,b,c,z)
+ import tDM,tMat
+ DM a ! DM
+ DM b ! DM
+ Mat c ! Mat
+ PetscErrorCode z
+ end subroutine DMCreateAggregates
+ subroutine DMDACreateAggregates(a,b,c,z)
+ import tDM,tMat
+ DM a ! DM
+ DM b ! DM
+ Mat c ! Mat
+ PetscErrorCode z
+ end subroutine DMDACreateAggregates
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdm.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdm.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdm.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdm.h90 2023-02-27 23:28:35.000000000 +0100
@@ -130,7 +130,7 @@
PetscErrorCode z
end subroutine DMShellSetDestroyContext
subroutine DMShellSetMatrix(a,b,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
Mat b ! Mat
PetscErrorCode z
@@ -236,6 +236,174 @@
Vec b ! Vec
PetscErrorCode z
end subroutine DMRestoreGlobalVector
+ subroutine DMGetCoordinateDM(a,b,z)
+ import tDM
+ DM a ! DM
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMGetCoordinateDM
+ subroutine DMSetCoordinateDM(a,b,z)
+ import tDM
+ DM a ! DM
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMSetCoordinateDM
+ subroutine DMGetCellCoordinateDM(a,b,z)
+ import tDM
+ DM a ! DM
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinateDM
+ subroutine DMSetCellCoordinateDM(a,b,z)
+ import tDM
+ DM a ! DM
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMSetCellCoordinateDM
+ subroutine DMGetCoordinateDim(a,b,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscErrorCode z
+ end subroutine DMGetCoordinateDim
+ subroutine DMSetCoordinateDim(a,b,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscErrorCode z
+ end subroutine DMSetCoordinateDim
+ subroutine DMGetCoordinateSection(a,b,z)
+ import tDM,tPetscSection
+ DM a ! DM
+ PetscSection b ! PetscSection
+ PetscErrorCode z
+ end subroutine DMGetCoordinateSection
+ subroutine DMSetCoordinateSection(a,b,c,z)
+ import tDM,tPetscSection
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscSection c ! PetscSection
+ PetscErrorCode z
+ end subroutine DMSetCoordinateSection
+ subroutine DMGetCellCoordinateSection(a,b,z)
+ import tDM,tPetscSection
+ DM a ! DM
+ PetscSection b ! PetscSection
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinateSection
+ subroutine DMSetCellCoordinateSection(a,b,c,z)
+ import tDM,tPetscSection
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscSection c ! PetscSection
+ PetscErrorCode z
+ end subroutine DMSetCellCoordinateSection
+ subroutine DMGetCoordinates(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCoordinates
+ subroutine DMSetCoordinates(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMSetCoordinates
+ subroutine DMGetCellCoordinates(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinates
+ subroutine DMSetCellCoordinates(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMSetCellCoordinates
+ subroutine DMGetCoordinatesLocalSetUp(a,z)
+ import tDM
+ DM a ! DM
+ PetscErrorCode z
+ end subroutine DMGetCoordinatesLocalSetUp
+ subroutine DMGetCoordinatesLocal(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCoordinatesLocal
+ subroutine DMGetCoordinatesLocalNoncollective(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCoordinatesLocalNoncollective
+ subroutine DMGetCoordinatesLocalTuple(a,b,c,d,z)
+ import tDM,tPetscSection,tIS,tVec
+ DM a ! DM
+ IS b ! IS
+ PetscSection c ! PetscSection
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCoordinatesLocalTuple
+ subroutine DMSetCoordinatesLocal(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMSetCoordinatesLocal
+ subroutine DMGetCellCoordinatesLocalSetUp(a,z)
+ import tDM
+ DM a ! DM
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinatesLocalSetUp
+ subroutine DMGetCellCoordinatesLocal(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinatesLocal
+ subroutine DMGetCellCoordinatesLocalNoncollective(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMGetCellCoordinatesLocalNoncollective
+ subroutine DMSetCellCoordinatesLocal(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMSetCellCoordinatesLocal
+ subroutine DMGetLocalBoundingBox(a,b,c,z)
+ import tDM
+ DM a ! DM
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine DMGetLocalBoundingBox
+ subroutine DMGetBoundingBox(a,b,c,z)
+ import tDM
+ DM a ! DM
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine DMGetBoundingBox
+ subroutine DMProjectCoordinates(a,b,z)
+ import tDM
+ DM a ! DM
+ PetscFE b ! PetscFE
+ PetscErrorCode z
+ end subroutine DMProjectCoordinates
+ subroutine DMLocatePoints(a,b,c,d,z)
+ import tPetscSF,tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ DMPointLocationType c ! DMPointLocationType
+ PetscSF d ! PetscSF
+ PetscErrorCode z
+ end subroutine DMLocatePoints
subroutine DMCreate(a,b,z)
import tDM
MPI_Comm a ! MPI_Comm
@@ -261,13 +429,13 @@
PetscErrorCode z
end subroutine VecSetDM
subroutine MatGetDM(a,b,z)
- import tMat,tDM
+ import tDM,tMat
Mat a ! Mat
DM b ! DM
PetscErrorCode z
end subroutine MatGetDM
subroutine MatSetDM(a,b,z)
- import tMat,tDM
+ import tDM,tMat
Mat a ! Mat
DM b ! DM
PetscErrorCode z
@@ -307,7 +475,7 @@
PetscErrorCode z
end subroutine DMGetBlockSize
subroutine DMCreateInterpolationScale(a,b,c,d,z)
- import tMat,tDM,tVec
+ import tDM,tMat,tVec
DM a ! DM
DM b ! DM
Mat c ! Mat
@@ -315,21 +483,21 @@
PetscErrorCode z
end subroutine DMCreateInterpolationScale
subroutine DMCreateRestriction(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
DM b ! DM
Mat c ! Mat
PetscErrorCode z
end subroutine DMCreateRestriction
subroutine DMCreateInjection(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
DM b ! DM
Mat c ! Mat
PetscErrorCode z
end subroutine DMCreateInjection
subroutine DMCreateMassMatrix(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
DM b ! DM
Mat c ! Mat
@@ -342,14 +510,14 @@
PetscErrorCode z
end subroutine DMCreateMassMatrixLumped
subroutine DMCreateColoring(a,b,c,z)
- import tISColoring,tDM
+ import tDM,tISColoring
DM a ! DM
ISColoringType b ! ISColoringType
ISColoring c ! ISColoring
PetscErrorCode z
end subroutine DMCreateColoring
subroutine DMCreateMatrix(a,b,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
Mat b ! Mat
PetscErrorCode z
@@ -380,14 +548,14 @@
PetscErrorCode z
end subroutine DMRefine
subroutine DMInterpolate(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
Mat b ! Mat
DM c ! DM
PetscErrorCode z
end subroutine DMInterpolate
subroutine DMInterpolateSolution(a,b,c,d,e,z)
- import tMat,tDM,tVec
+ import tDM,tMat,tVec
DM a ! DM
DM b ! DM
Mat c ! Mat
@@ -492,7 +660,7 @@
PetscErrorCode z
end subroutine DMCoarsen
subroutine DMRestrict(a,b,c,d,e,z)
- import tMat,tDM,tVec
+ import tDM,tMat,tVec
DM a ! DM
Mat b ! Mat
Vec c ! Vec
@@ -569,7 +737,7 @@
PetscErrorCode z
end subroutine DMSetLocalSection
subroutine DMGetDefaultConstraints(a,b,c,d,z)
- import tMat,tDM,tPetscSection,tVec
+ import tDM,tMat,tVec,tPetscSection
DM a ! DM
PetscSection b ! PetscSection
Mat c ! Mat
@@ -577,7 +745,7 @@
PetscErrorCode z
end subroutine DMGetDefaultConstraints
subroutine DMSetDefaultConstraints(a,b,c,d,z)
- import tMat,tDM,tPetscSection,tVec
+ import tDM,tMat,tVec,tPetscSection
DM a ! DM
PetscSection b ! PetscSection
Mat c ! Mat
@@ -650,7 +818,7 @@
PetscErrorCode z
end subroutine DMSetNumFields
subroutine DMGetField(a,b,c,d,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
@@ -658,7 +826,7 @@
PetscErrorCode z
end subroutine DMGetField
subroutine DMSetField(a,b,c,d,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
@@ -666,7 +834,7 @@
PetscErrorCode z
end subroutine DMSetField
subroutine DMAddField(a,b,c,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscObject c ! PetscObject
@@ -747,7 +915,7 @@
PetscErrorCode z
end subroutine DMGetCellDS
subroutine DMGetRegionDS(a,b,c,d,z)
- import tIS,tDM,tDMLabel
+ import tDMLabel,tDM,tIS
DM a ! DM
DMLabel b ! DMLabel
IS c ! IS
@@ -755,7 +923,7 @@
PetscErrorCode z
end subroutine DMGetRegionDS
subroutine DMSetRegionDS(a,b,c,d,z)
- import tIS,tDM,tDMLabel
+ import tDMLabel,tDM,tIS
DM a ! DM
DMLabel b ! DMLabel
IS c ! IS
@@ -763,7 +931,7 @@
PetscErrorCode z
end subroutine DMSetRegionDS
subroutine DMGetRegionNumDS(a,b,c,d,e,z)
- import tIS,tDM,tDMLabel
+ import tDMLabel,tDM,tIS
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
@@ -772,7 +940,7 @@
PetscErrorCode z
end subroutine DMGetRegionNumDS
subroutine DMSetRegionNumDS(a,b,c,d,e,z)
- import tIS,tDM,tDMLabel
+ import tDMLabel,tDM,tIS
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
@@ -871,7 +1039,7 @@
PetscErrorCode z
end subroutine DMGetNumLabels
subroutine DMRemoveLabelBySelf(a,b,c,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscBool c ! PetscBool
@@ -972,174 +1140,6 @@
DM b ! DM
PetscErrorCode z
end subroutine DMCopyAuxiliaryVec
- subroutine DMGetCoordinateDM(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMGetCoordinateDM
- subroutine DMSetCoordinateDM(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMSetCoordinateDM
- subroutine DMGetCellCoordinateDM(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMGetCellCoordinateDM
- subroutine DMSetCellCoordinateDM(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMSetCellCoordinateDM
- subroutine DMGetCoordinateDim(a,b,z)
- import tDM
- DM a ! DM
- PetscInt b ! PetscInt
- PetscErrorCode z
- end subroutine DMGetCoordinateDim
- subroutine DMSetCoordinateDim(a,b,z)
- import tDM
- DM a ! DM
- PetscInt b ! PetscInt
- PetscErrorCode z
- end subroutine DMSetCoordinateDim
- subroutine DMGetCoordinateSection(a,b,z)
- import tDM,tPetscSection
- DM a ! DM
- PetscSection b ! PetscSection
- PetscErrorCode z
- end subroutine DMGetCoordinateSection
- subroutine DMSetCoordinateSection(a,b,c,z)
- import tDM,tPetscSection
- DM a ! DM
- PetscInt b ! PetscInt
- PetscSection c ! PetscSection
- PetscErrorCode z
- end subroutine DMSetCoordinateSection
- subroutine DMGetCellCoordinateSection(a,b,z)
- import tDM,tPetscSection
- DM a ! DM
- PetscSection b ! PetscSection
- PetscErrorCode z
- end subroutine DMGetCellCoordinateSection
- subroutine DMSetCellCoordinateSection(a,b,c,z)
- import tDM,tPetscSection
- DM a ! DM
- PetscInt b ! PetscInt
- PetscSection c ! PetscSection
- PetscErrorCode z
- end subroutine DMSetCellCoordinateSection
- subroutine DMGetCoordinates(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCoordinates
- subroutine DMSetCoordinates(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMSetCoordinates
- subroutine DMGetCellCoordinates(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCellCoordinates
- subroutine DMSetCellCoordinates(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMSetCellCoordinates
- subroutine DMGetCoordinatesLocalSetUp(a,z)
- import tDM
- DM a ! DM
- PetscErrorCode z
- end subroutine DMGetCoordinatesLocalSetUp
- subroutine DMGetCoordinatesLocal(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCoordinatesLocal
- subroutine DMGetCoordinatesLocalNoncollective(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCoordinatesLocalNoncollective
- subroutine DMGetCoordinatesLocalTuple(a,b,c,d,z)
- import tIS,tDM,tPetscSection,tVec
- DM a ! DM
- IS b ! IS
- PetscSection c ! PetscSection
- Vec d ! Vec
- PetscErrorCode z
- end subroutine DMGetCoordinatesLocalTuple
- subroutine DMSetCoordinatesLocal(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMSetCoordinatesLocal
- subroutine DMGetCellCoordinatesLocalSetUp(a,z)
- import tDM
- DM a ! DM
- PetscErrorCode z
- end subroutine DMGetCellCoordinatesLocalSetUp
- subroutine DMGetCellCoordinatesLocal(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCellCoordinatesLocal
- subroutine DMGetCellCoordinatesLocalNoncollective(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMGetCellCoordinatesLocalNoncollective
- subroutine DMSetCellCoordinatesLocal(a,b,z)
- import tDM,tVec
- DM a ! DM
- Vec b ! Vec
- PetscErrorCode z
- end subroutine DMSetCellCoordinatesLocal
- subroutine DMGetLocalBoundingBox(a,b,c,z)
- import tDM
- DM a ! DM
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine DMGetLocalBoundingBox
- subroutine DMGetBoundingBox(a,b,c,z)
- import tDM
- DM a ! DM
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine DMGetBoundingBox
- subroutine DMProjectCoordinates(a,b,z)
- import tDM
- DM a ! DM
- PetscFE b ! PetscFE
- PetscErrorCode z
- end subroutine DMProjectCoordinates
- subroutine DMLocatePoints(a,b,c,d,z)
- import tPetscSF,tDM,tVec
- DM a ! DM
- Vec b ! Vec
- DMPointLocationType c ! DMPointLocationType
- PetscSF d ! PetscSF
- PetscErrorCode z
- end subroutine DMLocatePoints
subroutine PetscPartitionerView(a,b,z)
import tPetscViewer
PetscPartitioner a ! PetscPartitioner
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmlabel.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmlabel.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmlabel.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmlabel.h90 2023-02-27 23:28:35.000000000 +0100
@@ -12,7 +12,7 @@
PetscErrorCode z
end subroutine DMLabelAddStrata
subroutine DMLabelAddStrataIS(a,b,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
IS b ! IS
PetscErrorCode z
@@ -113,7 +113,7 @@
PetscErrorCode z
end subroutine DMLabelClearValue
subroutine DMLabelInsertIS(a,b,c,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
IS b ! IS
PetscInt c ! PetscInt
@@ -126,13 +126,13 @@
PetscErrorCode z
end subroutine DMLabelGetNumValues
subroutine DMLabelGetValueIS(a,b,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
IS b ! IS
PetscErrorCode z
end subroutine DMLabelGetValueIS
subroutine DMLabelGetNonEmptyStratumValuesIS(a,b,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
IS b ! IS
PetscErrorCode z
@@ -167,14 +167,14 @@
PetscErrorCode z
end subroutine DMLabelGetStratumBounds
subroutine DMLabelGetStratumIS(a,b,c,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
PetscInt b ! PetscInt
IS c ! IS
PetscErrorCode z
end subroutine DMLabelGetStratumIS
subroutine DMLabelSetStratumIS(a,b,c,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
PetscInt b ! PetscInt
IS c ! IS
@@ -210,47 +210,47 @@
PetscErrorCode z
end subroutine DMLabelFilter
subroutine DMLabelPermute(a,b,c,z)
- import tIS,tDMLabel
+ import tDMLabel,tIS
DMLabel a ! DMLabel
IS b ! IS
DMLabel c ! DMLabel
PetscErrorCode z
end subroutine DMLabelPermute
subroutine DMLabelDistribute(a,b,c,z)
- import tPetscSF,tDMLabel
+ import tDMLabel,tPetscSF
DMLabel a ! DMLabel
PetscSF b ! PetscSF
DMLabel c ! DMLabel
PetscErrorCode z
end subroutine DMLabelDistribute
subroutine DMLabelGather(a,b,c,z)
- import tPetscSF,tDMLabel
+ import tDMLabel,tPetscSF
DMLabel a ! DMLabel
PetscSF b ! PetscSF
DMLabel c ! DMLabel
PetscErrorCode z
end subroutine DMLabelGather
subroutine DMLabelPropagateBegin(a,b,z)
- import tPetscSF,tDMLabel
+ import tDMLabel,tPetscSF
DMLabel a ! DMLabel
PetscSF b ! PetscSF
PetscErrorCode z
end subroutine DMLabelPropagateBegin
subroutine DMLabelPropagateEnd(a,b,z)
- import tPetscSF,tDMLabel
+ import tDMLabel,tPetscSF
DMLabel a ! DMLabel
PetscSF b ! PetscSF
PetscErrorCode z
end subroutine DMLabelPropagateEnd
subroutine DMLabelConvertToSection(a,b,c,z)
- import tIS,tPetscSection,tDMLabel
+ import tDMLabel,tIS,tPetscSection
DMLabel a ! DMLabel
PetscSection b ! PetscSection
IS c ! IS
PetscErrorCode z
end subroutine DMLabelConvertToSection
subroutine PetscSectionCreateGlobalSectionLabel(a,b,c,d,e,f,z)
- import tPetscSF,tPetscSection,tDMLabel
+ import tDMLabel,tPetscSection,tPetscSF
PetscSection a ! PetscSection
PetscSF b ! PetscSF
PetscBool c ! PetscBool
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90 2023-02-27 23:28:35.000000000 +0100
@@ -1,9 +1,3 @@
- subroutine DMNetworkCreate(a,b,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- DM b ! DM
- PetscErrorCode z
- end subroutine DMNetworkCreate
subroutine DMNetworkMonitorCreate(a,b,z)
import tDM
DM a ! DM
@@ -166,14 +160,14 @@
PetscErrorCode z
end subroutine DMNetworkHasJacobian
subroutine DMNetworkEdgeSetMatrix(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
PetscInt b ! PetscInt
Mat c (*) ! Mat
PetscErrorCode z
end subroutine DMNetworkEdgeSetMatrix
subroutine DMNetworkVertexSetMatrix(a,b,c,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
PetscInt b ! PetscInt
Mat c (*) ! Mat
@@ -192,7 +186,7 @@
PetscErrorCode z
end subroutine DMNetworkSetVertexLocalToGlobalOrdering
subroutine DMNetworkCreateIS(a,b,c,d,e,f,g,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
PetscInt b ! PetscInt
PetscInt c (*) ! PetscInt
@@ -203,7 +197,7 @@
PetscErrorCode z
end subroutine DMNetworkCreateIS
subroutine DMNetworkCreateLocalIS(a,b,c,d,e,f,g,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
PetscInt b ! PetscInt
PetscInt c (*) ! PetscInt
@@ -218,3 +212,9 @@
DM a ! DM
PetscErrorCode z
end subroutine DMNetworkFinalizeComponents
+ subroutine DMNetworkCreate(a,b,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMNetworkCreate
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90 2023-02-27 23:28:35.000000000 +0100
@@ -19,7 +19,7 @@
PetscErrorCode z
end subroutine DMPlexGetAdjacency
subroutine DMPlexCreateTwoSidedProcessSF(a,b,c,d,e,f,g,h,z)
- import tPetscSF,tDM,tPetscSection,tIS
+ import tPetscSF,tDM,tIS,tPetscSection
DM a ! DM
PetscSF b ! PetscSF
PetscSection c ! PetscSection
@@ -31,7 +31,7 @@
PetscErrorCode z
end subroutine DMPlexCreateTwoSidedProcessSF
subroutine DMPlexDistributeOwnership(a,b,c,d,e,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
DM a ! DM
PetscSection b ! PetscSection
IS c ! IS
@@ -47,7 +47,7 @@
PetscErrorCode z
end subroutine DMPlexStratifyMigrationSF
subroutine DMPlexDistributeField(a,b,c,d,e,f,z)
- import tPetscSF,tDM,tPetscSection,tVec
+ import tPetscSF,tDM,tVec,tPetscSection
DM a ! DM
PetscSF b ! PetscSF
PetscSection c ! PetscSection
@@ -57,7 +57,7 @@
PetscErrorCode z
end subroutine DMPlexDistributeField
subroutine DMPlexDistributeFieldIS(a,b,c,d,e,f,z)
- import tPetscSF,tDM,tPetscSection,tIS
+ import tPetscSF,tDM,tIS,tPetscSection
DM a ! DM
PetscSF b ! PetscSF
PetscSection c ! PetscSection
@@ -109,42 +109,6 @@
PetscBool b ! PetscBool
PetscErrorCode z
end subroutine DMPlexIsDistributed
- subroutine DMPlexInterpolatePointSF(a,b,z)
- import tPetscSF,tDM
- DM a ! DM
- PetscSF b ! PetscSF
- PetscErrorCode z
- end subroutine DMPlexInterpolatePointSF
- subroutine DMPlexInterpolate(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMPlexInterpolate
- subroutine DMPlexCopyCoordinates(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMPlexCopyCoordinates
- subroutine DMPlexUninterpolate(a,b,z)
- import tDM
- DM a ! DM
- DM b ! DM
- PetscErrorCode z
- end subroutine DMPlexUninterpolate
- subroutine DMPlexIsInterpolated(a,b,z)
- import tDM
- DM a ! DM
- DMPlexInterpolatedFlag b ! DMPlexInterpolatedFlag
- PetscErrorCode z
- end subroutine DMPlexIsInterpolated
- subroutine DMPlexIsInterpolatedCollective(a,b,z)
- import tDM
- DM a ! DM
- DMPlexInterpolatedFlag b ! DMPlexInterpolatedFlag
- PetscErrorCode z
- end subroutine DMPlexIsInterpolatedCollective
subroutine DMPlexMetricSetIsotropic(a,b,z)
import tDM
DM a ! DM
@@ -440,7 +404,7 @@
PetscErrorCode z
end subroutine DMPlexMetricIntersection3
subroutine DMPlexGetOrdering(a,b,c,d,z)
- import tIS,tDM,tDMLabel
+ import tDMLabel,tDM,tIS
DM a ! DM
MatOrderingType b ! MatOrderingType
DMLabel c ! DMLabel
@@ -448,13 +412,13 @@
PetscErrorCode z
end subroutine DMPlexGetOrdering
subroutine DMPlexGetOrdering1D(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
end subroutine DMPlexGetOrdering1D
subroutine DMPlexPermute(a,b,c,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
DM c ! DM
@@ -480,134 +444,6 @@
DM d ! DM
PetscErrorCode z
end subroutine DMPlexCreateCGNS
- subroutine DMPlexCheckInterfaceCones(a,z)
- import tDM
- DM a ! DM
- PetscErrorCode z
- end subroutine DMPlexCheckInterfaceCones
- subroutine DMPlexCreateDoublet(a,b,c,d,e,f,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscBool c ! PetscBool
- PetscBool d ! PetscBool
- PetscReal e ! PetscReal
- DM f ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateDoublet
- subroutine DMPlexCreateWedgeBoxMesh(a,b,c,d,e,f,g,h,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b (*) ! PetscInt
- PetscReal c (*) ! PetscReal
- PetscReal d (*) ! PetscReal
- DMBoundaryType e (*) ! DMBoundaryType
- PetscBool f ! PetscBool
- PetscBool g ! PetscBool
- DM h ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateWedgeBoxMesh
- subroutine DMPlexCreateHexCylinderMesh(a,b,c,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- DMBoundaryType b ! DMBoundaryType
- DM c ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateHexCylinderMesh
- subroutine DMPlexCreateWedgeCylinderMesh(a,b,c,d,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscBool c ! PetscBool
- DM d ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateWedgeCylinderMesh
- subroutine DMPlexCreateTPSMesh(a,b,c,d,e,f,g,h,i,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- DMPlexTPSType b ! DMPlexTPSType
- PetscInt c (*) ! PetscInt
- DMBoundaryType d (*) ! DMBoundaryType
- PetscBool e ! PetscBool
- PetscInt f ! PetscInt
- PetscInt g ! PetscInt
- PetscReal h ! PetscReal
- DM i ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateTPSMesh
- subroutine DMPlexCreateSphereMesh(a,b,c,d,e,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscBool c ! PetscBool
- PetscReal d ! PetscReal
- DM e ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateSphereMesh
- subroutine DMPlexCreateBallMesh(a,b,c,d,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscReal c ! PetscReal
- DM d ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateBallMesh
- subroutine DMPlexCreateReferenceCell(a,b,c,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- DMPolytopeType b ! DMPolytopeType
- DM c ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateReferenceCell
- subroutine DMPlexCreate(a,b,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- DM b ! DM
- PetscErrorCode z
- end subroutine DMPlexCreate
- subroutine DMPlexCreateFromCellListParallelPetsc(a,b,c,d,e,f,g,h,i&
- &,j,k,l,m,z)
- import tPetscSF,tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscInt d ! PetscInt
- PetscInt e ! PetscInt
- PetscInt f ! PetscInt
- PetscBool g ! PetscBool
- PetscInt h (*) ! PetscInt
- PetscInt i ! PetscInt
- PetscReal j (*) ! PetscReal
- PetscSF k ! PetscSF
- PetscInt l ! PetscInt
- DM m ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateFromCellListParallelPetsc
- subroutine DMPlexCreateFromCellListPetsc(a,b,c,d,e,f,g,h,i,j,z)
- import tDM
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscInt d ! PetscInt
- PetscInt e ! PetscInt
- PetscBool f ! PetscBool
- PetscInt g (*) ! PetscInt
- PetscInt h ! PetscInt
- PetscReal i (*) ! PetscReal
- DM j ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateFromCellListPetsc
- subroutine DMPlexCreateFromDAG(a,b,c,d,e,f,g,z)
- import tDM
- DM a ! DM
- PetscInt b ! PetscInt
- PetscInt c (*) ! PetscInt
- PetscInt d (*) ! PetscInt
- PetscInt e (*) ! PetscInt
- PetscInt f (*) ! PetscInt
- PetscScalar g (*) ! PetscScalar
- PetscErrorCode z
- end subroutine DMPlexCreateFromDAG
subroutine DMPlexGetScale(a,b,c,z)
import tDM
DM a ! DM
@@ -623,14 +459,14 @@
PetscErrorCode z
end subroutine DMPlexSetScale
subroutine DMPlexCreateRigidBody(a,b,c,z)
- import tMatNullSpace,tDM
+ import tDM,tMatNullSpace
DM a ! DM
PetscInt b ! PetscInt
MatNullSpace c ! MatNullSpace
PetscErrorCode z
end subroutine DMPlexCreateRigidBody
subroutine DMPlexCreateRigidBodies(a,b,c,d,e,f,z)
- import tMatNullSpace,tDM,tDMLabel
+ import tDMLabel,tDM,tMatNullSpace
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
@@ -730,14 +566,6 @@
Vec c ! Vec
PetscErrorCode z
end subroutine DMPlexReconstructGradientsFVM
- subroutine DMPlexCreateGmsh(a,b,c,d,z)
- import tPetscViewer,tDM
- MPI_Comm a ! MPI_Comm
- PetscViewer b ! PetscViewer
- PetscBool c ! PetscBool
- DM d ! DM
- PetscErrorCode z
- end subroutine DMPlexCreateGmsh
subroutine DMPlexCreateClosureIndex(a,b,z)
import tDM,tPetscSection
DM a ! DM
@@ -823,7 +651,7 @@
PetscErrorCode z
end subroutine DMPlexOrient
subroutine PetscPartitionerDMPlexPartition(a,b,c,d,e,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
PetscPartitioner a ! PetscPartitioner
DM b ! DM
PetscSection c ! PetscSection
@@ -844,25 +672,25 @@
PetscErrorCode z
end subroutine DMPlexSetPartitioner
subroutine DMPlexPartitionLabelClosure(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexPartitionLabelClosure
subroutine DMPlexPartitionLabelAdjacency(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexPartitionLabelAdjacency
subroutine DMPlexPartitionLabelPropagate(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexPartitionLabelPropagate
subroutine DMPlexPartitionLabelInvert(a,b,c,d,z)
- import tPetscSF,tDM,tDMLabel
+ import tDMLabel,tDM,tPetscSF
DM a ! DM
DMLabel b ! DMLabel
PetscSF c ! PetscSF
@@ -870,7 +698,7 @@
PetscErrorCode z
end subroutine DMPlexPartitionLabelInvert
subroutine DMPlexPartitionLabelCreateSF(a,b,c,z)
- import tPetscSF,tDM,tDMLabel
+ import tDMLabel,tDM,tPetscSF
DM a ! DM
DMLabel b ! DMLabel
PetscSF c ! PetscSF
@@ -940,7 +768,7 @@
PetscErrorCode z
end subroutine DMPlexCreateProcessSF
subroutine DMPlexCreateCoarsePointIS(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
@@ -982,38 +810,38 @@
PetscErrorCode z
end subroutine DMPlexGetRefinementFunction
subroutine DMPlexMarkBoundaryFaces(a,b,c,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
PetscInt b ! PetscInt
DMLabel c ! DMLabel
PetscErrorCode z
end subroutine DMPlexMarkBoundaryFaces
subroutine DMPlexLabelComplete(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexLabelComplete
subroutine DMPlexLabelAddCells(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexLabelAddCells
subroutine DMPlexLabelAddFaceCells(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexLabelAddFaceCells
subroutine DMPlexLabelClearCells(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexLabelClearCells
subroutine DMPlexLabelCohesiveComplete(a,b,c,d,e,f,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
DMLabel c ! DMLabel
@@ -1023,7 +851,7 @@
PetscErrorCode z
end subroutine DMPlexLabelCohesiveComplete
subroutine DMPlexCreateHybridMesh(a,b,c,d,e,f,g,h,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
DMLabel c ! DMLabel
@@ -1048,7 +876,7 @@
PetscErrorCode z
end subroutine DMPlexGetOrientedFace
subroutine DMPlexCreateSubmesh(a,b,c,d,e,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscInt c ! PetscInt
@@ -1057,7 +885,7 @@
PetscErrorCode z
end subroutine DMPlexCreateSubmesh
subroutine DMPlexFilter(a,b,c,d,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscInt c ! PetscInt
@@ -1065,19 +893,19 @@
PetscErrorCode z
end subroutine DMPlexFilter
subroutine DMPlexGetSubpointMap(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexGetSubpointMap
subroutine DMPlexSetSubpointMap(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
end subroutine DMPlexSetSubpointMap
subroutine DMPlexGetSubpointIS(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
@@ -1170,6 +998,109 @@
PetscReal j ! PetscReal
PetscErrorCode z
end subroutine DMPlexTransferVecTree
+ subroutine PetscViewerExodusIIGetId(a,b,z)
+ import tPetscViewer
+ PetscViewer a ! PetscViewer
+ integer b ! int
+ PetscErrorCode z
+ end subroutine PetscViewerExodusIIGetId
+ subroutine PetscViewerExodusIISetOrder(a,b,z)
+ import tPetscViewer
+ PetscViewer a ! PetscViewer
+ PetscInt b ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscViewerExodusIISetOrder
+ subroutine PetscViewerExodusIIGetOrder(a,b,z)
+ import tPetscViewer
+ PetscViewer a ! PetscViewer
+ PetscInt b ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscViewerExodusIIGetOrder
+ subroutine DMPlexCreateExodus(a,b,c,d,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscBool c ! PetscBool
+ DM d ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateExodus
+ subroutine DMPlexSnapToGeomModel(a,b,c,d,e,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscScalar d (*) ! PetscScalar
+ PetscScalar e (*) ! PetscScalar
+ PetscErrorCode z
+ end subroutine DMPlexSnapToGeomModel
+ subroutine DMPlexInflateToGeomModel(a,z)
+ import tDM
+ DM a ! DM
+ PetscErrorCode z
+ end subroutine DMPlexInflateToGeomModel
+ subroutine DMPlexFindVertices(a,b,c,d,z)
+ import tDM,tIS,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscReal c ! PetscReal
+ IS d ! IS
+ PetscErrorCode z
+ end subroutine DMPlexFindVertices
+ subroutine DMPlexComputeProjection3Dto2D(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscScalar b (*) ! PetscScalar
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine DMPlexComputeProjection3Dto2D
+ subroutine DMPlexComputeGeometryFEM(a,b,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine DMPlexComputeGeometryFEM
+ subroutine DMPlexComputeGeometryFVM(a,b,c,z)
+ import tDM,tVec
+ DM a ! DM
+ Vec b ! Vec
+ Vec c ! Vec
+ PetscErrorCode z
+ end subroutine DMPlexComputeGeometryFVM
+ subroutine DMPlexComputeGradientFVM(a,b,c,d,e,z)
+ import tDM,tVec
+ DM a ! DM
+ PetscFV b ! PetscFV
+ Vec c ! Vec
+ Vec d ! Vec
+ DM e ! DM
+ PetscErrorCode z
+ end subroutine DMPlexComputeGradientFVM
+ subroutine DMPlexGetDataFVM(a,b,c,d,e,z)
+ import tDM,tVec
+ DM a ! DM
+ PetscFV b ! PetscFV
+ Vec c ! Vec
+ Vec d ! Vec
+ DM e ! DM
+ PetscErrorCode z
+ end subroutine DMPlexGetDataFVM
+ subroutine DMPlexCoordinatesToReference(a,b,c,d,e,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscReal d (*) ! PetscReal
+ PetscReal e (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine DMPlexCoordinatesToReference
+ subroutine DMPlexReferenceToCoordinates(a,b,c,d,e,z)
+ import tDM
+ DM a ! DM
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscReal d (*) ! PetscReal
+ PetscReal e (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine DMPlexReferenceToCoordinates
subroutine DMPlexIsSimplex(a,b,z)
import tDM
DM a ! DM
@@ -1185,7 +1116,7 @@
PetscErrorCode z
end subroutine DMPlexGetSimplexOrBoxCells
subroutine DMPlexVecView1D(a,b,c,d,z)
- import tPetscViewer,tDM,tVec
+ import tDM,tVec,tPetscViewer
DM a ! DM
PetscInt b ! PetscInt
Vec c (*) ! Vec
@@ -1193,32 +1124,32 @@
PetscErrorCode z
end subroutine DMPlexVecView1D
subroutine DMPlexTopologyView(a,b,z)
- import tPetscViewer,tDM
+ import tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscErrorCode z
end subroutine DMPlexTopologyView
subroutine DMPlexCoordinatesView(a,b,z)
- import tPetscViewer,tDM
+ import tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscErrorCode z
end subroutine DMPlexCoordinatesView
subroutine DMPlexLabelsView(a,b,z)
- import tPetscViewer,tDM
+ import tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscErrorCode z
end subroutine DMPlexLabelsView
subroutine DMPlexSectionView(a,b,c,z)
- import tPetscViewer,tDM
+ import tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
PetscErrorCode z
end subroutine DMPlexSectionView
subroutine DMPlexGlobalVectorView(a,b,c,d,z)
- import tPetscViewer,tDM,tVec
+ import tDM,tVec,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
@@ -1226,7 +1157,7 @@
PetscErrorCode z
end subroutine DMPlexGlobalVectorView
subroutine DMPlexLocalVectorView(a,b,c,d,z)
- import tPetscViewer,tDM,tVec
+ import tDM,tVec,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
@@ -1234,28 +1165,28 @@
PetscErrorCode z
end subroutine DMPlexLocalVectorView
subroutine DMPlexTopologyLoad(a,b,c,z)
- import tPetscViewer,tDM,tPetscSF
+ import tPetscSF,tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscSF c ! PetscSF
PetscErrorCode z
end subroutine DMPlexTopologyLoad
subroutine DMPlexCoordinatesLoad(a,b,c,z)
- import tPetscViewer,tDM,tPetscSF
+ import tPetscSF,tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscSF c ! PetscSF
PetscErrorCode z
end subroutine DMPlexCoordinatesLoad
subroutine DMPlexLabelsLoad(a,b,c,z)
- import tPetscViewer,tDM,tPetscSF
+ import tPetscSF,tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
PetscSF c ! PetscSF
PetscErrorCode z
end subroutine DMPlexLabelsLoad
subroutine DMPlexSectionLoad(a,b,c,d,e,f,z)
- import tPetscViewer,tDM,tPetscSF
+ import tPetscSF,tDM,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
@@ -1265,7 +1196,7 @@
PetscErrorCode z
end subroutine DMPlexSectionLoad
subroutine DMPlexGlobalVectorLoad(a,b,c,d,e,z)
- import tPetscViewer,tDM,tPetscSF,tVec
+ import tPetscSF,tDM,tVec,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
@@ -1274,7 +1205,7 @@
PetscErrorCode z
end subroutine DMPlexGlobalVectorLoad
subroutine DMPlexLocalVectorLoad(a,b,c,d,e,z)
- import tPetscViewer,tDM,tPetscSF,tVec
+ import tPetscSF,tDM,tVec,tPetscViewer
DM a ! DM
PetscViewer b ! PetscViewer
DM c ! DM
@@ -1324,14 +1255,14 @@
PetscErrorCode z
end subroutine DMPlexAddConeSize
subroutine DMPlexGetConeRecursiveVertices(a,b,c,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
IS c ! IS
PetscErrorCode z
end subroutine DMPlexGetConeRecursiveVertices
subroutine DMPlexGetConeRecursive(a,b,c,d,e,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
DM a ! DM
IS b ! IS
PetscInt c ! PetscInt
@@ -1340,7 +1271,7 @@
PetscErrorCode z
end subroutine DMPlexGetConeRecursive
subroutine DMPlexRestoreConeRecursive(a,b,c,d,e,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
DM a ! DM
IS b ! IS
PetscInt c ! PetscInt
@@ -1430,7 +1361,7 @@
PetscErrorCode z
end subroutine DMPlexComputeCellTypes
subroutine DMPlexGetDepthLabel(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
@@ -1472,7 +1403,7 @@
PetscErrorCode z
end subroutine DMPlexGetPointHeight
subroutine DMPlexGetCellTypeLabel(a,b,z)
- import tDM,tDMLabel
+ import tDMLabel,tDM
DM a ! DM
DMLabel b ! DMLabel
PetscErrorCode z
@@ -1506,19 +1437,19 @@
PetscErrorCode z
end subroutine DMPlexGetGhostCellStratum
subroutine DMPlexGetCellNumbering(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
end subroutine DMPlexGetCellNumbering
subroutine DMPlexGetVertexNumbering(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
end subroutine DMPlexGetVertexNumbering
subroutine DMPlexCreatePointNumbering(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
@@ -1599,122 +1530,191 @@
PetscErrorCode z
end subroutine DMPlexSetRegularRefinement
subroutine DMPlexGetAnchors(a,b,c,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
DM a ! DM
PetscSection b ! PetscSection
IS c ! IS
PetscErrorCode z
end subroutine DMPlexGetAnchors
subroutine DMPlexSetAnchors(a,b,c,z)
- import tIS,tDM,tPetscSection
+ import tDM,tIS,tPetscSection
DM a ! DM
PetscSection b ! PetscSection
IS c ! IS
PetscErrorCode z
end subroutine DMPlexSetAnchors
- subroutine PetscViewerExodusIIGetId(a,b,z)
- import tPetscViewer
- PetscViewer a ! PetscViewer
- integer b ! int
+ subroutine DMPlexCheckInterfaceCones(a,z)
+ import tDM
+ DM a ! DM
PetscErrorCode z
- end subroutine PetscViewerExodusIIGetId
- subroutine PetscViewerExodusIISetOrder(a,b,z)
- import tPetscViewer
- PetscViewer a ! PetscViewer
+ end subroutine DMPlexCheckInterfaceCones
+ subroutine DMPlexCreateDoublet(a,b,c,d,e,f,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
PetscInt b ! PetscInt
+ PetscBool c ! PetscBool
+ PetscBool d ! PetscBool
+ PetscReal e ! PetscReal
+ DM f ! DM
PetscErrorCode z
- end subroutine PetscViewerExodusIISetOrder
- subroutine PetscViewerExodusIIGetOrder(a,b,z)
- import tPetscViewer
- PetscViewer a ! PetscViewer
+ end subroutine DMPlexCreateDoublet
+ subroutine DMPlexCreateWedgeBoxMesh(a,b,c,d,e,f,g,h,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ PetscInt b (*) ! PetscInt
+ PetscReal c (*) ! PetscReal
+ PetscReal d (*) ! PetscReal
+ DMBoundaryType e (*) ! DMBoundaryType
+ PetscBool f ! PetscBool
+ PetscBool g ! PetscBool
+ DM h ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateWedgeBoxMesh
+ subroutine DMPlexCreateHexCylinderMesh(a,b,c,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ DMBoundaryType b ! DMBoundaryType
+ DM c ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateHexCylinderMesh
+ subroutine DMPlexCreateWedgeCylinderMesh(a,b,c,d,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
PetscInt b ! PetscInt
+ PetscBool c ! PetscBool
+ DM d ! DM
PetscErrorCode z
- end subroutine PetscViewerExodusIIGetOrder
- subroutine DMPlexCreateExodus(a,b,c,d,z)
+ end subroutine DMPlexCreateWedgeCylinderMesh
+ subroutine DMPlexCreateTPSMesh(a,b,c,d,e,f,g,h,i,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ DMPlexTPSType b ! DMPlexTPSType
+ PetscInt c (*) ! PetscInt
+ DMBoundaryType d (*) ! DMBoundaryType
+ PetscBool e ! PetscBool
+ PetscInt f ! PetscInt
+ PetscInt g ! PetscInt
+ PetscReal h ! PetscReal
+ DM i ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateTPSMesh
+ subroutine DMPlexCreateSphereMesh(a,b,c,d,e,z)
import tDM
MPI_Comm a ! MPI_Comm
PetscInt b ! PetscInt
PetscBool c ! PetscBool
+ PetscReal d ! PetscReal
+ DM e ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateSphereMesh
+ subroutine DMPlexCreateBallMesh(a,b,c,d,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscReal c ! PetscReal
DM d ! DM
PetscErrorCode z
- end subroutine DMPlexCreateExodus
- subroutine DMPlexSnapToGeomModel(a,b,c,d,e,z)
+ end subroutine DMPlexCreateBallMesh
+ subroutine DMPlexCreateReferenceCell(a,b,c,z)
import tDM
- DM a ! DM
+ MPI_Comm a ! MPI_Comm
+ DMPolytopeType b ! DMPolytopeType
+ DM c ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreateReferenceCell
+ subroutine DMPlexCreate(a,b,z)
+ import tDM
+ MPI_Comm a ! MPI_Comm
+ DM b ! DM
+ PetscErrorCode z
+ end subroutine DMPlexCreate
+ subroutine DMPlexCreateFromCellListParallelPetsc(a,b,c,d,e,f,g,h,i&
+ &,j,k,l,m,z)
+ import tPetscSF,tDM
+ MPI_Comm a ! MPI_Comm
PetscInt b ! PetscInt
PetscInt c ! PetscInt
- PetscScalar d (*) ! PetscScalar
- PetscScalar e (*) ! PetscScalar
+ PetscInt d ! PetscInt
+ PetscInt e ! PetscInt
+ PetscInt f ! PetscInt
+ PetscBool g ! PetscBool
+ PetscInt h (*) ! PetscInt
+ PetscInt i ! PetscInt
+ PetscReal j (*) ! PetscReal
+ PetscSF k ! PetscSF
+ PetscInt l ! PetscInt
+ DM m ! DM
PetscErrorCode z
- end subroutine DMPlexSnapToGeomModel
- subroutine DMPlexInflateToGeomModel(a,z)
+ end subroutine DMPlexCreateFromCellListParallelPetsc
+ subroutine DMPlexCreateFromCellListPetsc(a,b,c,d,e,f,g,h,i,j,z)
import tDM
- DM a ! DM
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscInt d ! PetscInt
+ PetscInt e ! PetscInt
+ PetscBool f ! PetscBool
+ PetscInt g (*) ! PetscInt
+ PetscInt h ! PetscInt
+ PetscReal i (*) ! PetscReal
+ DM j ! DM
PetscErrorCode z
- end subroutine DMPlexInflateToGeomModel
- subroutine DMPlexFindVertices(a,b,c,d,z)
- import tIS,tDM,tVec
+ end subroutine DMPlexCreateFromCellListPetsc
+ subroutine DMPlexCreateFromDAG(a,b,c,d,e,f,g,z)
+ import tDM
DM a ! DM
- Vec b ! Vec
- PetscReal c ! PetscReal
- IS d ! IS
+ PetscInt b ! PetscInt
+ PetscInt c (*) ! PetscInt
+ PetscInt d (*) ! PetscInt
+ PetscInt e (*) ! PetscInt
+ PetscInt f (*) ! PetscInt
+ PetscScalar g (*) ! PetscScalar
PetscErrorCode z
- end subroutine DMPlexFindVertices
- subroutine DMPlexComputeProjection3Dto2D(a,b,c,z)
- PetscInt a ! PetscInt
- PetscScalar b (*) ! PetscScalar
- PetscReal c (*) ! PetscReal
+ end subroutine DMPlexCreateFromDAG
+ subroutine DMPlexCreateGmsh(a,b,c,d,z)
+ import tDM,tPetscViewer
+ MPI_Comm a ! MPI_Comm
+ PetscViewer b ! PetscViewer
+ PetscBool c ! PetscBool
+ DM d ! DM
PetscErrorCode z
- end subroutine DMPlexComputeProjection3Dto2D
- subroutine DMPlexComputeGeometryFEM(a,b,z)
- import tDM,tVec
+ end subroutine DMPlexCreateGmsh
+ subroutine DMPlexInterpolatePointSF(a,b,z)
+ import tPetscSF,tDM
DM a ! DM
- Vec b ! Vec
+ PetscSF b ! PetscSF
PetscErrorCode z
- end subroutine DMPlexComputeGeometryFEM
- subroutine DMPlexComputeGeometryFVM(a,b,c,z)
- import tDM,tVec
+ end subroutine DMPlexInterpolatePointSF
+ subroutine DMPlexInterpolate(a,b,z)
+ import tDM
DM a ! DM
- Vec b ! Vec
- Vec c ! Vec
+ DM b ! DM
PetscErrorCode z
- end subroutine DMPlexComputeGeometryFVM
- subroutine DMPlexComputeGradientFVM(a,b,c,d,e,z)
- import tDM,tVec
+ end subroutine DMPlexInterpolate
+ subroutine DMPlexCopyCoordinates(a,b,z)
+ import tDM
DM a ! DM
- PetscFV b ! PetscFV
- Vec c ! Vec
- Vec d ! Vec
- DM e ! DM
+ DM b ! DM
PetscErrorCode z
- end subroutine DMPlexComputeGradientFVM
- subroutine DMPlexGetDataFVM(a,b,c,d,e,z)
- import tDM,tVec
+ end subroutine DMPlexCopyCoordinates
+ subroutine DMPlexUninterpolate(a,b,z)
+ import tDM
DM a ! DM
- PetscFV b ! PetscFV
- Vec c ! Vec
- Vec d ! Vec
- DM e ! DM
+ DM b ! DM
PetscErrorCode z
- end subroutine DMPlexGetDataFVM
- subroutine DMPlexCoordinatesToReference(a,b,c,d,e,z)
+ end subroutine DMPlexUninterpolate
+ subroutine DMPlexIsInterpolated(a,b,z)
import tDM
DM a ! DM
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscReal d (*) ! PetscReal
- PetscReal e (*) ! PetscReal
+ DMPlexInterpolatedFlag b ! DMPlexInterpolatedFlag
PetscErrorCode z
- end subroutine DMPlexCoordinatesToReference
- subroutine DMPlexReferenceToCoordinates(a,b,c,d,e,z)
+ end subroutine DMPlexIsInterpolated
+ subroutine DMPlexIsInterpolatedCollective(a,b,z)
import tDM
DM a ! DM
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscReal d (*) ! PetscReal
- PetscReal e (*) ! PetscReal
+ DMPlexInterpolatedFlag b ! DMPlexInterpolatedFlag
PetscErrorCode z
- end subroutine DMPlexReferenceToCoordinates
+ end subroutine DMPlexIsInterpolatedCollective
subroutine DMPlexTransformExtrudeGetLayers(a,b,z)
import tDMPlexTransform
DMPlexTransform a ! DMPlexTransform
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdt.h90 petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdt.h90
--- petsc-3.18.4+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdt.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/f90-mod/ftn-auto-interfaces/petscdt.h90 2023-02-27 23:28:35.000000000 +0100
@@ -286,132 +286,6 @@
PetscReal e ! PetscReal
PetscErrorCode z
end subroutine PetscDTAltVStar
- subroutine PetscPDFMaxwellBoltzmann1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFMaxwellBoltzmann1D
- subroutine PetscCDFMaxwellBoltzmann1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFMaxwellBoltzmann1D
- subroutine PetscPDFMaxwellBoltzmann2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFMaxwellBoltzmann2D
- subroutine PetscCDFMaxwellBoltzmann2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFMaxwellBoltzmann2D
- subroutine PetscPDFMaxwellBoltzmann3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFMaxwellBoltzmann3D
- subroutine PetscCDFMaxwellBoltzmann3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFMaxwellBoltzmann3D
- subroutine PetscPDFGaussian1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFGaussian1D
- subroutine PetscPDFSampleGaussian1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleGaussian1D
- subroutine PetscPDFGaussian2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFGaussian2D
- subroutine PetscPDFSampleGaussian2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleGaussian2D
- subroutine PetscPDFGaussian3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFGaussian3D
- subroutine PetscPDFSampleGaussian3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleGaussian3D
- subroutine PetscPDFConstant1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFConstant1D
- subroutine PetscCDFConstant1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFConstant1D
- subroutine PetscPDFSampleConstant1D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleConstant1D
- subroutine PetscPDFConstant2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFConstant2D
- subroutine PetscCDFConstant2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFConstant2D
- subroutine PetscPDFSampleConstant2D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleConstant2D
- subroutine PetscPDFConstant3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFConstant3D
- subroutine PetscCDFConstant3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscCDFConstant3D
- subroutine PetscPDFSampleConstant3D(a,b,c,z)
- PetscReal a (*) ! PetscReal
- PetscReal b (*) ! PetscReal
- PetscReal c (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscPDFSampleConstant3D
subroutine PetscWeakFormCopy(a,b,z)
PetscWeakForm a ! PetscWeakForm
PetscWeakForm b ! PetscWeakForm
@@ -678,3 +552,129 @@
PetscDS b ! PetscDS
PetscErrorCode z
end subroutine PetscDSCopyExactSolutions
+ subroutine PetscPDFMaxwellBoltzmann1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFMaxwellBoltzmann1D
+ subroutine PetscCDFMaxwellBoltzmann1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFMaxwellBoltzmann1D
+ subroutine PetscPDFMaxwellBoltzmann2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFMaxwellBoltzmann2D
+ subroutine PetscCDFMaxwellBoltzmann2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFMaxwellBoltzmann2D
+ subroutine PetscPDFMaxwellBoltzmann3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFMaxwellBoltzmann3D
+ subroutine PetscCDFMaxwellBoltzmann3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFMaxwellBoltzmann3D
+ subroutine PetscPDFGaussian1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFGaussian1D
+ subroutine PetscPDFSampleGaussian1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleGaussian1D
+ subroutine PetscPDFGaussian2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFGaussian2D
+ subroutine PetscPDFSampleGaussian2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleGaussian2D
+ subroutine PetscPDFGaussian3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFGaussian3D
+ subroutine PetscPDFSampleGaussian3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleGaussian3D
+ subroutine PetscPDFConstant1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFConstant1D
+ subroutine PetscCDFConstant1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFConstant1D
+ subroutine PetscPDFSampleConstant1D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleConstant1D
+ subroutine PetscPDFConstant2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFConstant2D
+ subroutine PetscCDFConstant2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFConstant2D
+ subroutine PetscPDFSampleConstant2D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleConstant2D
+ subroutine PetscPDFConstant3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFConstant3D
+ subroutine PetscCDFConstant3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscCDFConstant3D
+ subroutine PetscPDFSampleConstant3D(a,b,c,z)
+ PetscReal a (*) ! PetscReal
+ PetscReal b (*) ! PetscReal
+ PetscReal c (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscPDFSampleConstant3D
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/da/dacorn.c petsc-3.18.5+dfsg1/src/dm/impls/da/dacorn.c
--- petsc-3.18.4+dfsg1/src/dm/impls/da/dacorn.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/da/dacorn.c 2023-02-27 23:11:05.000000000 +0100
@@ -196,7 +196,7 @@
}
/*@C
- DMDAGetCoordinateName - Gets the name of a coodinate direction associated with a `DMDA`.
+ DMDAGetCoordinateName - Gets the name of a coordinate direction associated with a `DMDA`.
Not collective; name will contain a common value
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/da/dageometry.c petsc-3.18.5+dfsg1/src/dm/impls/da/dageometry.c
--- petsc-3.18.4+dfsg1/src/dm/impls/da/dageometry.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/da/dageometry.c 2023-02-27 23:11:05.000000000 +0100
@@ -228,7 +228,7 @@
PetscCall(private_DMDALocatePointsIS_3D_Regular(dm, pos, &iscell));
break;
default:
- SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Unsupport spatial dimension");
+ SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Unsupported spatial dimension");
}
PetscCall(VecGetLocalSize(pos, &npoints));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/da/dagtol.c petsc-3.18.5+dfsg1/src/dm/impls/da/dagtol.c
--- petsc-3.18.4+dfsg1/src/dm/impls/da/dagtol.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/da/dagtol.c 2023-02-27 23:11:05.000000000 +0100
@@ -125,7 +125,7 @@
Level: advanced
Notes:
- The global and natrual vectors used here need not be the same as those
+ The global and natural vectors used here need not be the same as those
obtained from `DMCreateGlobalVector()` and `DMDACreateNaturalVector()`, BUT they
must have the same parallel data layout; they could, for example, be
obtained with `VecDuplicate()` from the `DMDA` originating vectors.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/da/dainterp.c petsc-3.18.5+dfsg1/src/dm/impls/da/dainterp.c
--- petsc-3.18.4+dfsg1/src/dm/impls/da/dainterp.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/da/dainterp.c 2023-02-27 23:11:05.000000000 +0100
@@ -1419,7 +1419,7 @@
Basic idea is as follows. Here's a 2D example, suppose r_x, r_y are the ratios
for dimension 1 and 2 respectively.
Let (i,j) be a coarse grid node. All the fine grid nodes between r_x*i and r_x*(i+1)
- and r_y*j and r_y*(j+1) will be grouped into the same coarse grid agregate.
+ and r_y*j and r_y*(j+1) will be grouped into the same coarse grid aggregate.
Each specific dof on the fine grid is mapped to one dof on the coarse grid.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/da/ftn-auto/makefile petsc-3.18.5+dfsg1/src/dm/impls/da/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/dm/impls/da/ftn-auto/makefile 2023-01-31 07:00:47.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/da/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = daf.c dacornf.c dacreatef.c daddf.c dadistf.c dageometryf.c dagetarrayf.c dagetelemf.c dagtolf.c dagtonaf.c daindexf.c dainterpf.c dalocalf.c dapreallocatef.c dasubf.c fddaf.c gr1f.c
+SOURCEC = daf.c dacreatef.c daddf.c dadistf.c dagetarrayf.c dagetelemf.c dagtonaf.c daindexf.c dalocalf.c dapreallocatef.c dasubf.c fddaf.c gr1f.c dacornf.c dageometryf.c dagtolf.c dainterpf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/network/ftn-auto/makefile petsc-3.18.5+dfsg1/src/dm/impls/network/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/dm/impls/network/ftn-auto/makefile 2023-01-31 07:00:47.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/network/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = networkcreatef.c networkmonitorf.c networkf.c
+SOURCEC = networkmonitorf.c networkf.c networkcreatef.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/network/network.c petsc-3.18.5+dfsg1/src/dm/impls/network/network.c
--- petsc-3.18.4+dfsg1/src/dm/impls/network/network.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/network/network.c 2023-02-27 23:11:05.000000000 +0100
@@ -118,7 +118,7 @@
PetscCheck(Nsubnet >= 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_INCOMP, "Number of global subnetworks %" PetscInt_FMT " cannot be less than 1", Nsubnet);
network->cloneshared->Nsubnet = Nsubnet;
- network->cloneshared->nsubnet = 0; /* initial value; will be determind by DMNetworkAddSubnetwork() */
+ network->cloneshared->nsubnet = 0; /* initial value; will be determined by DMNetworkAddSubnetwork() */
PetscCall(PetscCalloc1(Nsubnet, &network->cloneshared->subnet));
/* num of shared vertices */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/network/networkcreate.c petsc-3.18.5+dfsg1/src/dm/impls/network/networkcreate.c
--- petsc-3.18.4+dfsg1/src/dm/impls/network/networkcreate.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/network/networkcreate.c 2023-02-27 23:11:05.000000000 +0100
@@ -344,7 +344,7 @@
PetscFunctionReturn(0);
}
/*
- copies over the subnetid and index portions of the DMNetworkComponentHeader from orignal dm to the newdm
+ copies over the subnetid and index portions of the DMNetworkComponentHeader from original dm to the newdm
*/
static PetscErrorCode DMNetworkCopyHeaderTopological(DM dm, DM newdm)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/network/tests/ex1.c petsc-3.18.5+dfsg1/src/dm/impls/network/tests/ex1.c
--- petsc-3.18.4+dfsg1/src/dm/impls/network/tests/ex1.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/network/tests/ex1.c 2023-02-27 23:11:05.000000000 +0100
@@ -107,7 +107,7 @@
PetscCall(CreateSimpleStarGraph(PETSC_COMM_WORLD, dofv, dofe, ne, PETSC_TRUE, &dm));
PetscCall(DMNetworkGetEdgeRange(dm, &eStart, &eEnd));
- /* check if cloning changed any componenent */
+ /* check if cloning changed any component */
if (eStart < eEnd) PetscCall(DMNetworkGetComponent(dm, eStart, 0, NULL, (void **)&compprev, &ndofsprev));
PetscCall(DMClone(dm, &dmclone));
if (eStart < eEnd) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/ftn-auto/makefile petsc-3.18.5+dfsg1/src/dm/impls/plex/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/ftn-auto/makefile 2023-01-31 07:00:47.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CPPFLAGS = ${NETCFD_INCLUDE} ${EXODUSII_INCLUDE}
CFLAGS =
FFLAGS =
-SOURCEC = plexdistributef.c plexinterpolatef.c plexmetricf.c plexreorderf.c plexcgnsf.c plexcheckinterfacef.c plexcreatef.c plexfemf.c plexfvmf.c plexgmshf.c plexindicesf.c plexnaturalf.c plexorientf.c plexpartitionf.c plexpointf.c plexprojectf.c plexrefinef.c plexsubmeshf.c plextreef.c plexf.c plexexodusiif.c plexegadsf.c plexgeometryf.c
+SOURCEC = plexdistributef.c plexmetricf.c plexreorderf.c plexcgnsf.c plexfemf.c plexfvmf.c plexindicesf.c plexnaturalf.c plexorientf.c plexpartitionf.c plexpointf.c plexprojectf.c plexrefinef.c plexsubmeshf.c plextreef.c plexexodusiif.c plexegadsf.c plexgeometryf.c plexf.c plexcheckinterfacef.c plexcreatef.c plexgmshf.c plexinterpolatef.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plex.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plex.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plex.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plex.c 2023-02-27 23:11:05.000000000 +0100
@@ -1780,7 +1780,7 @@
/*
exodusII requires that all sets be part of exactly one cell set.
If the dm does not have a "Cell Sets" label defined, we create one
- with ID 1, containig all cells.
+ with ID 1, containing all cells.
Note that if the Cell Sets label is defined but does not cover all cells,
we may still have a problem. This should probably be checked here or in the viewer;
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexcheckinterface.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexcheckinterface.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexcheckinterface.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexcheckinterface.c 2023-02-27 23:11:05.000000000 +0100
@@ -150,7 +150,7 @@
Level: developer
Notes:
- For example, if there is an edge (rank,index)=(0,2) connecting points cone(0,2)=[(0,0),(0,1)] in this order, and the point SF containts connections 0 <- (1,0), 1 <- (1,1) and 2 <- (1,2),
+ For example, if there is an edge (rank,index)=(0,2) connecting points cone(0,2)=[(0,0),(0,1)] in this order, and the point SF contains connections 0 <- (1,0), 1 <- (1,1) and 2 <- (1,2),
then this check would pass if the edge (1,2) has cone(1,2)=[(1,0),(1,1)]. By contrast, if cone(1,2)=[(1,1),(1,0)], then this check would fail.
This is mainly intended for debugging/testing purposes. Does not check cone orientation, for this purpose use `DMPlexCheckFaces()`.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexcreate.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexcreate.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexcreate.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexcreate.c 2023-02-27 23:11:05.000000000 +0100
@@ -2607,7 +2607,7 @@
where Q = I - 2 n n^T is a symmetric orthogonal matrix.
The first column of Q is parallel to g so the remaining two columns span the null space.
Let Qn = Q[:,1:] be those remaining columns. Then Qn Qn^T is an orthogonal projector into the tangent space.
- Since Q is symmetric, this is equivalent to multipyling by Q and taking the last two entries.
+ Since Q is symmetric, this is equivalent to multiplying by Q and taking the last two entries.
In total, we have a system of 3 equations in 3 unknowns:
f(y) = 0 1 equation
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexextrude.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexextrude.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexextrude.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexextrude.c 2023-02-27 23:11:05.000000000 +0100
@@ -26,7 +26,7 @@
Level: intermediate
Notes:
- Extrusion is implemented as a `DMPlexTransform`, so that new mesh points are produced from old mesh points. In the exmaple below,
+ Extrusion is implemented as a `DMPlexTransform`, so that new mesh points are produced from old mesh points. In the example below,
we begin with an edge (v0, v3). It is extruded for two layers. The original vertex v0 produces two edges, e1 and e2, and three vertices,
v0, v2, and v2. Similarly, vertex v3 produces e3, e4, v3, v4, and v5. The original edge produces itself, e5 and e6, as well as face1 and
face2. The new mesh points are given the same labels as the original points which produced them. Thus, if v0 had a label value 1, then so
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexgmsh.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexgmsh.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexgmsh.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexgmsh.c 2023-02-27 23:11:05.000000000 +0100
@@ -678,7 +678,7 @@
if (byteSwap) PetscCall(PetscByteSwap(&numNodes, PETSC_LONG, 1));
if (gmsh->binary) {
size_t nbytes = sizeof(int) + 3 * sizeof(double);
- char *cbuf = NULL; /* dummy value to prevent warning from compiler about possible unitilized value */
+ char *cbuf = NULL; /* dummy value to prevent warning from compiler about possible uninitialized value */
PetscCall(GmshBufferGet(gmsh, numNodes, nbytes, &cbuf));
PetscCall(PetscViewerRead(viewer, cbuf, numNodes * nbytes, NULL, PETSC_CHAR));
for (node = 0; node < numNodes; ++node, ++n) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexinterpolate.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexinterpolate.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexinterpolate.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexinterpolate.c 2023-02-27 23:11:05.000000000 +0100
@@ -1164,7 +1164,7 @@
*/
/* Step 1: Construct section+SFNode array
The section has entries for all shared faces for which we have a leaf point in the cone
- The array holds candidate shared faces, each face is refered to by the leaf point */
+ The array holds candidate shared faces, each face is referred to by the leaf point */
PetscCall(PetscSectionCreate(comm, &candidateSection));
PetscCall(PetscSectionSetChart(candidateSection, 0, Nr));
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/plexsection.c petsc-3.18.5+dfsg1/src/dm/impls/plex/plexsection.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/plexsection.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/plexsection.c 2023-02-27 23:11:05.000000000 +0100
@@ -406,7 +406,7 @@
. numComp - An array of size numFields that holds the number of components for each field
. numDof - An array of size numFields*(dim+1) which holds the number of dof for each field on a mesh piece of dimension d
. numBC - The number of boundary conditions
-. bcField - An array of size numBC giving the field number for each boundry condition
+. bcField - An array of size numBC giving the field number for each boundary condition
. bcComps - [Optional] An array of size numBC giving an `IS` holding the field components to which each boundary condition applies
. bcPoints - An array of size numBC giving an `IS` holding the `DMPLEX` points to which each boundary condition applies
- perm - Optional permutation of the chart, or NULL
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex18.c petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex18.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex18.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex18.c 2023-02-27 23:11:05.000000000 +0100
@@ -731,7 +731,7 @@
}
PetscCall(PetscLogStagePop());
}
- PetscCheck(user->ncoords % user->dim == 0, comm, PETSC_ERR_ARG_OUTOFRANGE, "length of coordinates array %" PetscInt_FMT " must be divisable by spatial dimension %" PetscInt_FMT, user->ncoords, user->dim);
+ PetscCheck(user->ncoords % user->dim == 0, comm, PETSC_ERR_ARG_OUTOFRANGE, "length of coordinates array %" PetscInt_FMT " must be divisible by spatial dimension %" PetscInt_FMT, user->ncoords, user->dim);
PetscCall(PetscObjectSetName((PetscObject)*dm, "Original Mesh"));
PetscCall(DMViewFromOptions(*dm, NULL, "-orig_dm_view"));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex19.c petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex19.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex19.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex19.c 2023-02-27 23:11:05.000000000 +0100
@@ -237,7 +237,7 @@
PetscCall(KSPCreate(PETSC_COMM_WORLD, &ksp));
PetscCall(KSPSetOperators(ksp, mass, mass));
PetscCall(KSPSetFromOptions(ksp));
- // Compute rhs as M f, could also direclty project the analytic function but we might not have it
+ // Compute rhs as M f, could also directly project the analytic function but we might not have it
PetscCall(DMCreateMassMatrix(dmProj, dmaProj, &mass2));
PetscCall(MatMult(mass2, u, rhs));
PetscCall(MatDestroy(&mass2));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex39.c petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex39.c
--- petsc-3.18.4+dfsg1/src/dm/impls/plex/tests/ex39.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/plex/tests/ex39.c 2023-02-27 23:11:05.000000000 +0100
@@ -269,7 +269,7 @@
}
}
- /* Multiply each coordinate vector by our tranformation.*/
+ /* Multiply each coordinate vector by our transformation.*/
for (i = 0; i < npoints; ++i) {
for (j = 0; j < dim; ++j) {
tmpcoord[j] = 0;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stag1d.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stag1d.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stag1d.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stag1d.c 2023-02-27 23:11:05.000000000 +0100
@@ -27,14 +27,14 @@
. -stag_ghost_stencil_width - width of ghost region, in elements
- -stag_boundary_type_x <none,ghosted,periodic> - `DMBoundaryType` value
+ Level: beginner
+
Notes:
- You must call `DMSetUp()` after this call before using the DM.
- If you wish to use the options database (see the keys above) to change values in the DMStag, you must call
+ You must call `DMSetUp()` after this call before using the `DM`.
+ If you wish to use the options database (see the keys above) to change values in the `DMSTAG`, you must call
`DMSetFromOptions()` after this function but before `DMSetUp()`.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate1d()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate1d()`
@*/
PETSC_EXTERN PetscErrorCode DMStagCreate1d(MPI_Comm comm, DMBoundaryType bndx, PetscInt M, PetscInt dof0, PetscInt dof1, DMStagStencilType stencilType, PetscInt stencilWidth, const PetscInt lx[], DM *dm)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stag2d.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stag2d.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stag2d.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stag2d.c 2023-02-27 23:11:05.000000000 +0100
@@ -19,7 +19,7 @@
- lx,ly - arrays of local x,y element counts, of length equal to m,n, summing to M,N
Output Parameter:
-. dm - the new DMStag object
+. dm - the new `DMSTAG` object
Options Database Keys:
+ -dm_view - calls `DMViewFromOptions()` at the conclusion of `DMSetUp()`
@@ -31,14 +31,14 @@
. -stag_boundary_type_x <none,ghosted,periodic> - `DMBoundaryType` value
- -stag_boundary_type_y <none,ghosted,periodic> - `DMBoundaryType` value
+ Level: beginner
+
Notes:
- You must call `DMSetUp()` after this call, before using the DM.
- If you wish to use the options database (see the keys above) to change values in the DMStag, you must call
+ You must call `DMSetUp()` after this call, before using the `DM`.
+ If you wish to use the options database (see the keys above) to change values in the `DMSTAG`, you must call
`DMSetFromOptions()` after this function but before `DMSetUp()`.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate3d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate2d()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate3d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate2d()`
@*/
PETSC_EXTERN PetscErrorCode DMStagCreate2d(MPI_Comm comm, DMBoundaryType bndx, DMBoundaryType bndy, PetscInt M, PetscInt N, PetscInt m, PetscInt n, PetscInt dof0, PetscInt dof1, PetscInt dof2, DMStagStencilType stencilType, PetscInt stencilWidth, const PetscInt lx[], const PetscInt ly[], DM *dm)
{
@@ -542,7 +542,7 @@
idxGlobal[count] = globalOffset + j * entriesPerElementRow + i * stag->entriesPerElement + d;
idxLocal[count] = jghost * entriesPerElementRowGhost + ighost * stag->entriesPerElement + d;
}
- for (d = 0; d < stag->dof[1]; ++d, ++count) { /* then left ege (skipping bottom face) */
+ for (d = 0; d < stag->dof[1]; ++d, ++count) { /* then left edge (skipping bottom face) */
idxGlobal[count] = globalOffset + j * entriesPerElementRow + i * stag->entriesPerElement + stag->dof[0] + d;
idxLocal[count] = jghost * entriesPerElementRowGhost + ighost * stag->entriesPerElement + stag->dof[0] + stag->dof[1] + d;
}
@@ -1191,7 +1191,7 @@
idxGlobal[count] = globalOffset + j * entriesPerElementRow + i * stag->entriesPerElement + d;
idxLocal[count] = jghost * entriesPerElementRowGhost + ighost * stag->entriesPerElement + d;
}
- for (d = 0; d < stag->dof[1]; ++d, ++count) { /* then left ege (skipping bottom face) */
+ for (d = 0; d < stag->dof[1]; ++d, ++count) { /* then left edge (skipping bottom face) */
idxGlobal[count] = globalOffset + j * entriesPerElementRow + i * stag->entriesPerElement + stag->dof[0] + d;
idxLocal[count] = jghost * entriesPerElementRowGhost + ighost * stag->entriesPerElement + stag->dof[0] + stag->dof[1] + d;
}
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stag3d.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stag3d.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stag3d.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stag3d.c 2023-02-27 23:11:05.000000000 +0100
@@ -20,7 +20,7 @@
- lx,ly,lz - arrays of local x,y,z element counts, of length equal to m,n,p, summing to M,N,P
Output Parameter:
-. dm - the new DMStag object
+. dm - the new `DMSTAG` object
Options Database Keys:
+ -dm_view - calls `DMViewFromOptions()` at the conclusion of `DMSetUp()`
@@ -35,14 +35,14 @@
. -stag_boundary_type y <none,ghosted,periodic> - `DMBoundaryType` value
- -stag_boundary_type z <none,ghosted,periodic> - `DMBoundaryType` value
+ Level: beginner
+
Notes:
- You must call `DMSetUp()` after this call before using the DM.
- If you wish to use the options database (see the keys above) to change values in the DMStag, you must call
+ You must call `DMSetUp()` after this call before using the `DM`.
+ If you wish to use the options database (see the keys above) to change values in the `DMSTAG`, you must call
`DMSetFromOptions()` after this function but before `DMSetUp()`.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate3d()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMLocalToGlobalBegin()`, `DMDACreate3d()`
@*/
PETSC_EXTERN PetscErrorCode DMStagCreate3d(MPI_Comm comm, DMBoundaryType bndx, DMBoundaryType bndy, DMBoundaryType bndz, PetscInt M, PetscInt N, PetscInt P, PetscInt m, PetscInt n, PetscInt p, PetscInt dof0, PetscInt dof1, PetscInt dof2, PetscInt dof3, DMStagStencilType stencilType, PetscInt stencilWidth, const PetscInt lx[], const PetscInt ly[], const PetscInt lz[], DM *dm)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stag.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stag.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stag.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stag.c 2023-02-27 23:11:05.000000000 +0100
@@ -892,10 +892,11 @@
}
/*MC
- DMSTAG - `"stag"` - A DM object representing a "staggered grid" or a structured cell complex.
+ DMSTAG - `"stag"` - A `DM` object representing a "staggered grid" or a structured cell complex.
- See the [manual chapter on DMStag](/docs/manual/dmstag).
+ Level: beginner
+ Notes:
This implementation parallels the `DMDA` implementation in many ways, but allows degrees of freedom
to be associated with all "strata" in a logically-rectangular grid.
@@ -906,16 +907,15 @@
To allow easier reading and to some extent more similar code between different-dimensional implementations
of the same problem, we associate canonical names for each type of point, for each dimension of DMStag.
- * 1-dimensional DMStag objects have vertices (0D) and elements (1D).
- * 2-dimensional DMStag objects have vertices (0D), faces (1D), and elements (2D).
- * 3-dimensional DMStag objects have vertices (0D), edges (1D), faces (2D), and elements (3D).
+ * 1-dimensional `DMSTAG` objects have vertices (0D) and elements (1D).
+ * 2-dimensional `DMSTAG` objects have vertices (0D), faces (1D), and elements (2D).
+ * 3-dimensional `DMSTAG` objects have vertices (0D), edges (1D), faces (2D), and elements (3D).
- This naming is reflected when viewing a DMStag object with `DMView()`, and in forming
+ This naming is reflected when viewing a `DMSTAG` object with `DMView()`, and in forming
convenient options prefixes when creating a decomposition with `DMCreateFieldDecomposition()`.
- Level: beginner
-
-.seealso: `DM`, `DMPRODUCT`, `DMDA`, `DMPLEX`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMType`, `DMCreate()`, `DMSetType()`
+.seealso: [](chapter_stag), `DM`, `DMPRODUCT`, `DMDA`, `DMPLEX`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMType`, `DMCreate()`,
+ `DMSetType()`, `DMStagVecSplitToDMDA()`
M*/
PETSC_EXTERN PetscErrorCode DMCreate_Stag(DM dm)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stagda.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stagda.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stagda.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stagda.c 2023-02-27 23:11:05.000000000 +0100
@@ -408,33 +408,30 @@
}
/*@C
- DMStagVecSplitToDMDA - create a DMDA and `Vec` from a DMStag and `Vec`
+ DMStagVecSplitToDMDA - create a `DMDA` and `Vec` from a subgrid of a `DMSTAG` and its `Vec`
- Logically Collective
-
- High-level helper function which accepts a DMStag, a global vector, and location/dof,
- and generates a corresponding DMDA and Vec.
+ Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
. vec- Vec object associated with `dm`
. loc - which subgrid to extract (see `DMStagStencilLocation`)
- c - which component to extract (see note below)
Output Parameters:
-+ pda - the new `DMDA`
++ pda - the `DMDA`
- pdavec - the new `Vec`
+ Level: advanced
+
Notes:
If a `c` value of `-k` is provided, the first `k` DOF for that position are extracted,
- padding with zero values if needbe. If a non-negative value is provided, a single
+ padding with zero values if needed. If a non-negative value is provided, a single
DOF is extracted.
The caller is responsible for destroying the created `DMDA` and `Vec`.
- Level: advanced
-
-.seealso: `DMSTAG`, `DMDA`, `DMStagMigrateVec()`, `DMStagCreateCompatibleDMStag()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMDA`, `DMStagStencilLocation`, `DM`, `Vec`, `DMStagMigrateVec()`, `DMStagCreateCompatibleDMStag()`
@*/
PetscErrorCode DMStagVecSplitToDMDA(DM dm, Vec vec, DMStagStencilLocation loc, PetscInt c, DM *pda, Vec *pdavec)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stagintern.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stagintern.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stagintern.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stagintern.c 2023-02-27 23:11:05.000000000 +0100
@@ -3,9 +3,8 @@
#include <petsc/private/dmstagimpl.h>
-/* Note: this is an internal function but we provide a man page in case it's made public */
/*@C
- DMStagDuplicateWithoutSetup - duplicate a DMStag object without setting it up
+ DMStagDuplicateWithoutSetup - duplicate a `DMSTAG` object without setting it up
Collective
@@ -16,19 +15,21 @@
Output Parameter:
. newdm - The new `DM` object
+ Level: developer
+
Developer Notes:
- Copies over all of the state for a DMStag object, except that which is
+ Copies over all of the state for a `DMSTAG` object, except that which is
populated during `DMSetUp()`. This function is used within (all) other
functions that require an un-setup clone, which is common when duplicating,
- coarsening, refining, or creating compatible DMs with different fields. For
+ coarsening, refining, or creating compatible `DM`s with different fields. For
this reason it also accepts an MPI communicator as an argument (though note
that at the time of this writing, implementations of `DMCoarsen()` and `DMRefine()`
don't usually seem to respect their "comm" arguments). This function could be
- pushed up to the general DM API (and perhaps given a different name).
+ pushed up to the general `DM` API (and perhaps given a different name).
- Level: developer
+ This is an internal function but we provide a man page in case it's made public
- .seealso: `DMClone()`, `DMStagCreateCompatibleDMStag()`, `DMCoarsen()`, `DMRefine()`
+.seealso: [](chapter_stag), `DMSTAG`, `DM`, `DMClone()`, `DMStagCreateCompatibleDMStag()`, `DMCoarsen()`, `DMRefine()`
@*/
PetscErrorCode DMStagDuplicateWithoutSetup(DM dm, MPI_Comm comm, DM *newdm)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stagmulti.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stagmulti.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stagmulti.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stagmulti.c 2023-02-27 23:11:05.000000000 +0100
@@ -2,7 +2,7 @@
#include <petsc/private/dmstagimpl.h>
/*@C
- DMStagRestrictSimple - restricts data from a fine to a coarse DMStag, in the simplest way
+ DMStagRestrictSimple - restricts data from a fine to a coarse `DMSTAG`, in the simplest way
Values on coarse cells are averages of all fine cells that they cover.
Thus, values on vertices are injected, values on edges are averages
@@ -10,17 +10,16 @@
d dimensions are averages of $2^d$ underlying elements.
Input Parameters:
-+ dmf - fine DM
-. xf - data on fine DM
-- dmc - coarse DM
++ dmf - fine `DM`
+. xf - data on fine `DM`
+- dmc - coarse `DM`
Output Parameter:
-. xc - data on coarse DM
+. xc - data on coarse `DM`
Level: advanced
-.seealso: DMRestrict(), DMCoarsen(), DMSTAG, DMCreateInjection()
-
+.seealso: [](chapter_stag), `DMSTAG`, `DM`, `DMRestrict()`, `DMCoarsen()`, `DMSTAG`, `DMCreateInjection()`
@*/
PetscErrorCode DMStagRestrictSimple(DM dmf, Vec xf, DM dmc, Vec xc)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stagstencil.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stagstencil.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stagstencil.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stagstencil.c 2023-02-27 23:11:05.000000000 +0100
@@ -8,12 +8,12 @@
const char *const DMStagStencilLocations[] = {"NONE", "BACK_DOWN_LEFT", "BACK_DOWN", "BACK_DOWN_RIGHT", "BACK_LEFT", "BACK", "BACK_RIGHT", "BACK_UP_LEFT", "BACK_UP", "BACK_UP_RIGHT", "DOWN_LEFT", "DOWN", "DOWN_RIGHT", "LEFT", "ELEMENT", "RIGHT", "UP_LEFT", "UP", "UP_RIGHT", "FRONT_DOWN_LEFT", "FRONT_DOWN", "FRONT_DOWN_RIGHT", "FRONT_LEFT", "FRONT", "FRONT_RIGHT", "FRONT_UP_LEFT", "FRONT_UP", "FRONT_UP_RIGHT", "DMStagStencilLocation", "", NULL};
/*@C
- DMStagCreateISFromStencils - Create an `IS`, using global numberings, for a subset of DOF in a DMStag object
+ DMStagCreateISFromStencils - Create an `IS`, using global numberings, for a subset of DOF in a `DMSTAG` object
Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMStag` object
. n_stencil - the number of stencils provided
- stencils - an array of `DMStagStencil` objects (`i`, `j`, and `k` are ignored)
@@ -25,7 +25,7 @@
Level: advanced
-.seealso: `DMSTAG`, `IS`, `DMStagStencil`, `DMCreateGlobalVector`
+.seealso: [](chapter_stag), `DMSTAG`, `IS`, `DMStagStencil`, `DMCreateGlobalVector`
@*/
PetscErrorCode DMStagCreateISFromStencils(DM dm, PetscInt n_stencil, DMStagStencil *stencils, IS *is)
{
@@ -121,12 +121,12 @@
}
/*@C
- DMStagGetLocationDOF - Get number of DOF associated with a given point in a DMStag grid
+ DMStagGetLocationDOF - Get number of DOF associated with a given point in a `DMSTAG` grid
Not Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- loc - grid point (see `DMStagStencilLocation`)
Output Parameter:
@@ -134,7 +134,7 @@
Level: intermediate
-.seealso: `DMSTAG`, `DMStagStencilLocation`, `DMStagStencil`, `DMDAGetDof()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencilLocation`, `DMStagStencil`, `DMDAGetDof()`
@*/
PetscErrorCode DMStagGetLocationDOF(DM dm, DMStagStencilLocation loc, PetscInt *dof)
{
@@ -289,7 +289,7 @@
Not Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
. mat - the matrix
. nRow - number of rows
. posRow - grid locations (including components) of rows
@@ -301,7 +301,7 @@
Level: advanced
-.seealso: `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagMatSetValuesStencil()`, `MatSetValuesStencil()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `DMCreateMatrix()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagMatSetValuesStencil()`, `MatSetValuesStencil()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `DMCreateMatrix()`
@*/
PetscErrorCode DMStagMatGetValuesStencil(DM dm, Mat mat, PetscInt nRow, const DMStagStencil *posRow, PetscInt nCol, const DMStagStencil *posCol, PetscScalar *val)
{
@@ -326,7 +326,7 @@
Not Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
. mat - the matrix
. nRow - number of rows
. posRow - grid locations (including components) of rows
@@ -340,7 +340,7 @@
Level: intermediate
-.seealso: `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagMatGetValuesStencil()`, `MatSetValuesStencil()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `DMCreateMatrix()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagVecSetValuesStencil()`, `DMStagMatGetValuesStencil()`, `MatSetValuesStencil()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `DMCreateMatrix()`
@*/
PetscErrorCode DMStagMatSetValuesStencil(DM dm, Mat mat, PetscInt nRow, const DMStagStencil *posRow, PetscInt nCol, const DMStagStencil *posCol, const PetscScalar *val, InsertMode insertMode)
{
@@ -358,13 +358,13 @@
}
/*@C
- DMStagStencilToIndexLocal - Convert an array of DMStagStencil objects to an array of indices into a local vector.
+ DMStagStencilToIndexLocal - Convert an array of `DMStagStenci`l objects to an array of indices into a local vector.
Not Collective
Input Parameters:
-+ dm - the DMStag object
-. dim - the dimension of the DMStag object
++ dm - the `DMSTAG` object
+. dim - the dimension of the `DMSTAG` object
. n - the number of `DMStagStencil` objects
- pos - an array of `n` `DMStagStencil` objects
@@ -381,7 +381,7 @@
Level: developer
-.seealso: `DMSTAG`, `DMStagStencilLocation`, `DMStagStencil`, `DMGetLocalVector`, `DMCreateLocalVector`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencilLocation`, `DMStagStencil`, `DMGetLocalVector`, `DMCreateLocalVector`
@*/
PetscErrorCode DMStagStencilToIndexLocal(DM dm, PetscInt dim, PetscInt n, const DMStagStencil *pos, PetscInt *ix)
{
@@ -427,7 +427,7 @@
Not Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
. vec - the vector object
. n - the number of values to obtain
- pos - locations to obtain values from (as an array of `DMStagStencil` values)
@@ -444,7 +444,7 @@
Level: advanced
-.seealso: `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecSetValuesStencil()`, `DMStagMatSetValuesStencil()`, `DMStagVecGetArray()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecSetValuesStencil()`, `DMStagMatSetValuesStencil()`, `DMStagVecGetArray()`
@*/
PetscErrorCode DMStagVecGetValuesStencil(DM dm, Vec vec, PetscInt n, const DMStagStencil *pos, PetscScalar *val)
{
@@ -468,13 +468,13 @@
}
/*@C
- DMStagVecSetValuesStencil - Set Vec values using global grid indexing
+ DMStagVecSetValuesStencil - Set `Vec` values using global grid indexing
Not Collective
Input Parameters:
-+ dm - the DMStag object
-. vec - the Vec
++ dm - the `DMSTAG` object
+. vec - the `Vec`
. n - the number of values to set
. pos - the locations to set values, as an array of `DMStagStencil` structs
. val - the values to set
@@ -488,7 +488,7 @@
Level: advanced
-.seealso: `DMSTAG`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagMatSetValuesStencil()`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMStagVecGetArray()`
+.seealso: [](chapter_stag), `DMSTAG`, `Vec`, `DMStagStencil`, `DMStagStencilLocation`, `DMStagVecGetValuesStencil()`, `DMStagMatSetValuesStencil()`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMStagVecGetArray()`
@*/
PetscErrorCode DMStagVecSetValuesStencil(DM dm, Vec vec, PetscInt n, const DMStagStencil *pos, const PetscScalar *val, InsertMode insertMode)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/stagutils.c petsc-3.18.5+dfsg1/src/dm/impls/stag/stagutils.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/stagutils.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/stagutils.c 2023-02-27 23:11:05.000000000 +0100
@@ -10,14 +10,16 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. boundaryTypeX,boundaryTypeY,boundaryTypeZ - boundary types
++ boundaryTypeX - boundary type for x direction
+. boundaryTypeY - boundary type for y direction, not set for one dimensional problems
+- boundaryTypeZ - boundary type for z direction, not set for one and two dimensional problems
Level: intermediate
-.seealso: `DMSTAG`
+.seealso: [](chapter_stag), `DMSTAG`, `DMBoundaryType``
@*/
PetscErrorCode DMStagGetBoundaryTypes(DM dm, DMBoundaryType *boundaryTypeX, DMBoundaryType *boundaryTypeY, DMBoundaryType *boundaryTypeZ)
{
@@ -97,27 +99,30 @@
Logically Collective
+ Input Parameter:
+. dm - the `DMSTAG` object
+
+ Output Parameters:
++ arrX - local 1D coordinate arrays for x direction
+. arrY - local 1D coordinate arrays for y direction, not set for one dimensional problems
+- arrZ - local 1D coordinate arrays for z direction, not set for one and two dimensional problems
+
+ Level: intermediate
+
+ Notes:
A high-level helper function to quickly extract local coordinate arrays.
Note that 2-dimensional arrays are returned. See
`DMStagVecGetArray()`, which is called internally to produce these arrays
representing coordinates on elements and vertices (element boundaries)
- for a 1-dimensional DMStag in each coordinate direction.
+ for a 1-dimensional `DMSTAG` in each coordinate direction.
One should use `DMStagGetProductCoordinateLocationSlot()` to determine appropriate
indices for the second dimension in these returned arrays. This function
checks that the coordinate array is a suitable product of 1-dimensional
- DMStag objects.
-
- Input Parameter:
-. dm - the DMStag object
-
- Output Parameters:
-. arrX,arrY,arrZ - local 1D coordinate arrays
-
- Level: intermediate
+ `DMSTAG` objects.
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArraysRead()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagGetProductCoordinateLocationSlot()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArraysRead()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagGetProductCoordinateLocationSlot()`
@*/
PetscErrorCode DMStagGetProductCoordinateArrays(DM dm, void *arrX, void *arrY, void *arrZ)
{
@@ -131,17 +136,20 @@
Logically Collective
- See the man page for `DMStagGetProductCoordinateArrays()` for more information.
-
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. arrX,arrY,arrZ - local 1D coordinate arrays
++ arrX - local 1D coordinate arrays for x direction
+. arrY - local 1D coordinate arrays for y direction, not set for one dimensional problems
+- arrZ - local 1D coordinate arrays for z direction, not set for one and two dimensional problems
Level: intermediate
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArrays()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagGetProductCoordinateLocationSlot()`
+ Note:
+ See `DMStagGetProductCoordinateArrays()` for more information.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArrays()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagGetProductCoordinateLocationSlot()`
@*/
PetscErrorCode DMStagGetProductCoordinateArraysRead(DM dm, void *arrX, void *arrY, void *arrZ)
{
@@ -155,28 +163,28 @@
Not Collective
- High-level helper function to get slot indices for 1D coordinate DMs,
- for use with `DMStagGetProductCoordinateArrays()` and related functions.
-
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- loc - the grid location
Output Parameter:
. slot - the index to use in local arrays
+ Level: intermediate
+
Notes:
+ High-level helper function to get slot indices for 1D coordinate `DM`s,
+ for use with `DMStagGetProductCoordinateArrays()` and related functions.
+
For `loc`, one should use `DMSTAG_LEFT`, `DMSTAG_ELEMENT`, or `DMSTAG_RIGHT` for "previous", "center" and "next"
locations, respectively, in each dimension.
One can equivalently use `DMSTAG_DOWN` or `DMSTAG_BACK` in place of `DMSTAG_LEFT`,
and `DMSTAG_UP` or `DMSTACK_FRONT` in place of `DMSTAG_RIGHT`;
This function checks that the coordinates are actually set up so that using the
- slots from any of the 1D coordinate sub-DMs are valid for all the 1D coordinate sub-DMs.
-
- Level: intermediate
+ slots from any of the 1D coordinate sub-`DM`s are valid for all the 1D coordinate sub-`DM`s.
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`, `DMStagSetUniformCoordinates()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`, `DMStagSetUniformCoordinates()`
@*/
PETSC_EXTERN PetscErrorCode DMStagGetProductCoordinateLocationSlot(DM dm, DMStagStencilLocation loc, PetscInt *slot)
{
@@ -226,7 +234,7 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
+ x - starting element index in first direction
@@ -239,6 +247,8 @@
. nExtray - number of extra partial elements in second direction
- nExtraz - number of extra partial elements in third direction
+ Level: beginner
+
Notes:
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to NULL in this case.
@@ -246,9 +256,7 @@
The value is 1 on right, top, and front non-periodic domain ("physical") boundaries,
in the x, y, and z directions respectively, and otherwise 0.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagGetGhostCorners()`, `DMDAGetCorners()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetGhostCorners()`, `DMDAGetCorners()`
@*/
PetscErrorCode DMStagGetCorners(DM dm, PetscInt *x, PetscInt *y, PetscInt *z, PetscInt *m, PetscInt *n, PetscInt *p, PetscInt *nExtrax, PetscInt *nExtray, PetscInt *nExtraz)
{
@@ -274,7 +282,7 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
+ dof0 - the number of points per 0-cell (vertex/node)
@@ -284,7 +292,7 @@
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetCorners()`, `DMStagGetGhostCorners()`, `DMStagGetGlobalSizes()`, `DMStagGetStencilWidth()`, `DMStagGetBoundaryTypes()`, `DMStagGetLocationDOF()`, `DMDAGetDof()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetCorners()`, `DMStagGetGhostCorners()`, `DMStagGetGlobalSizes()`, `DMStagGetStencilWidth()`, `DMStagGetBoundaryTypes()`, `DMStagGetLocationDOF()`, `DMDAGetDof()`
@*/
PetscErrorCode DMStagGetDOF(DM dm, PetscInt *dof0, PetscInt *dof1, PetscInt *dof2, PetscInt *dof3)
{
@@ -305,7 +313,7 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
+ x - the starting element index in the first direction
@@ -315,12 +323,12 @@
. n - the element width in the second direction
- p - the element width in the third direction
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
-
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetCorners()`, `DMDAGetGhostCorners()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetCorners()`, `DMDAGetGhostCorners()`
@*/
PetscErrorCode DMStagGetGhostCorners(DM dm, PetscInt *x, PetscInt *y, PetscInt *z, PetscInt *m, PetscInt *n, PetscInt *p)
{
@@ -343,17 +351,19 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. M,N,P - global element counts in each direction
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
++ M - global element counts in the x direction
+. N - global element counts in the y direction
+- P - global element counts in the z direction
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetLocalSizes()`, `DMDAGetInfo()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetLocalSizes()`, `DMDAGetInfo()`
@*/
PetscErrorCode DMStagGetGlobalSizes(DM dm, PetscInt *M, PetscInt *N, PetscInt *P)
{
@@ -373,17 +383,19 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. isFirstRank0,isFirstRank1,isFirstRank2 - whether this rank is first in each direction
++ isFirstRank0 - whether this rank is first in the x direction
+. isFirstRank1 - whether this rank is first in the y direction
+- isFirstRank2 - whether this rank is first in the z direction
Level: intermediate
- Notes:
+ Note:
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
-.seealso: `DMSTAG`, `DMStagGetIsLastRank()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetIsLastRank()`
@*/
PetscErrorCode DMStagGetIsFirstRank(DM dm, PetscBool *isFirstRank0, PetscBool *isFirstRank1, PetscBool *isFirstRank2)
{
@@ -403,18 +415,19 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. isLastRank0,isLastRank1,isLastRank2 - whether this rank is last in each direction
++ isFirstRank0 - whether this rank is last in the x direction
+. isFirstRank1 - whether this rank is last in the y direction
+- isFirstRank2 - whether this rank is last in the z direction
Level: intermediate
- Notes:
+ Note:
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
- Level: intermediate
-.seealso: `DMSTAG`, `DMStagGetIsFirstRank()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetIsFirstRank()`
@*/
PetscErrorCode DMStagGetIsLastRank(DM dm, PetscBool *isLastRank0, PetscBool *isLastRank1, PetscBool *isLastRank2)
{
@@ -434,18 +447,19 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. m,n,p - local element counts (excluding ghosts) in each direction
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
- Level: intermediate
++ m - local element counts (excluding ghosts) in the x direction
+. n - local element counts (excluding ghosts) in the y direction
+- p - local element counts (excluding ghosts) in the z direction
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetGlobalSizes()`, `DMStagGetDOF()`, `DMStagGetNumRanks()`, `DMDAGetLocalInfo()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetGlobalSizes()`, `DMStagGetDOF()`, `DMStagGetNumRanks()`, `DMDAGetLocalInfo()`
@*/
PetscErrorCode DMStagGetLocalSizes(DM dm, PetscInt *m, PetscInt *n, PetscInt *p)
{
@@ -465,18 +479,16 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. nRanks0,nRanks1,nRanks2 - number of ranks in each direction in the grid decomposition
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
- Level: intermediate
++ nRanks0 - number of ranks in the x direction in the grid decomposition
+. nRanks1 - number of ranks in the y direction in the grid decomposition
+- nRanks2 - number of ranks in the z direction in the grid decomposition
- Level: beginner
+ Level: intermediate
-.seealso: `DMSTAG`, `DMStagGetGlobalSizes()`, `DMStagGetLocalSize()`, `DMStagSetNumRanks()`, `DMDAGetInfo()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetGlobalSizes()`, `DMStagGetLocalSize()`, `DMStagSetNumRanks()`, `DMDAGetInfo()`
@*/
PetscErrorCode DMStagGetNumRanks(DM dm, PetscInt *nRanks0, PetscInt *nRanks1, PetscInt *nRanks2)
{
@@ -496,20 +508,20 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
- Output Parameters:
+ Output Parameter:
. entries - number of rank-native entries in the global representation
+ Level: developer
+
Note:
This is the number of entries on this rank for a global vector associated with `dm`.
That is, it is value of `size` returned by `VecGetLocalSize(vec,&size)` when
`DMCreateGlobalVector(dm,&vec) is used to create a `Vec`. Users would typically
use these functions.
- Level: developer
-
-.seealso: `DMSTAG`, `DMStagGetDOF()`, `DMStagGetEntriesLocal()`, `DMStagGetEntriesPerElement()`, `DMCreateLocalVector()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetDOF()`, `DMStagGetEntriesLocal()`, `DMStagGetEntriesPerElement()`, `DMCreateLocalVector()`
@*/
PetscErrorCode DMStagGetEntries(DM dm, PetscInt *entries)
{
@@ -527,20 +539,20 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
- Output Parameters:
+ Output Parameter:
. entries - number of entries in the local representation
+ Level: developer
+
Note:
This is the number of entries on this rank in the local representation.
That is, it is value of `size` returned by `VecGetSize(vec,&size)` or
`VecGetLocalSize(vec,&size)` when `DMCreateLocalVector(dm,&vec)` is used to
create a `Vec`. Users would typically use these functions.
- Level: developer
-
-.seealso: DMSTAG, DMStagGetDOF(), DMStagGetEntries(), DMStagGetEntriesPerElement(), DMCreateLocalVector()
+.seealso: [](chapter_stag), DMSTAG, DMStagGetDOF(), DMStagGetEntries(), DMStagGetEntriesPerElement(), DMCreateLocalVector()
@*/
PetscErrorCode DMStagGetEntriesLocal(DM dm, PetscInt *entries)
{
@@ -558,18 +570,18 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
- Output Parameters:
+ Output Parameter:
. entriesPerElement - number of entries associated with each element in the local representation
+ Level: developer
+
Notes:
This is the natural block size for most local operations. In 1D it is equal to `dof0` $+$ `dof1`,
in 2D it is equal to `dof0` $+ 2$`dof1` $+$ `dof2`, and in 3D it is equal to `dof0` $+ 3$`dof1` $+ 3$`dof2` $+$ `dof3`
- Level: developer
-
-.seealso: `DMSTAG`, `DMStagGetDOF()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetDOF()`
@*/
PetscErrorCode DMStagGetEntriesPerElement(DM dm, PetscInt *entriesPerElement)
{
@@ -587,14 +599,14 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameter:
. stencilType - the elementwise ghost stencil type: `DMSTAG_STENCIL_BOX`, `DMSTAG_STENCIL_STAR`, or `DMSTAG_STENCIL_NONE`
Level: beginner
-.seealso: `DMSTAG`, `DMStagSetStencilType()`, `DMStagGetStencilWidth`, `DMStagStencilType`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagSetStencilType()`, `DMStagGetStencilWidth`, `DMStagStencilType`
@*/
PetscErrorCode DMStagGetStencilType(DM dm, DMStagStencilType *stencilType)
{
@@ -612,14 +624,14 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
- Output Parameters:
+ Output Parameter:
. stencilWidth - stencil/halo/ghost width in elements
Level: beginner
-.seealso: `DMSTAG`, `DMStagSetStencilWidth()`, `DMStagGetStencilType()`, `DMDAGetStencilType()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagSetStencilWidth()`, `DMStagGetStencilType()`, `DMDAGetStencilType()`
@*/
PetscErrorCode DMStagGetStencilWidth(DM dm, PetscInt *stencilWidth)
{
@@ -637,24 +649,24 @@
Not Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
+ lx - ownership along x direction (optional)
. ly - ownership along y direction (optional)
- lz - ownership along z direction (optional)
+ Level: intermediate
+
Notes:
These correspond to the optional final arguments passed to `DMStagCreate1d()`, `DMStagCreate2d()`, and `DMStagCreate3d()`.
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
In C you should not free these arrays, nor change the values in them.
- They will only have valid values while the DMStag they came from still exists (has not been destroyed).
-
- Level: intermediate
+ They will only have valid values while the `DMSTAG` they came from still exists (has not been destroyed).
-.seealso: `DMSTAG`, `DMStagSetGlobalSizes()`, `DMStagSetOwnershipRanges()`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDAGetOwnershipRanges()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagSetGlobalSizes()`, `DMStagSetOwnershipRanges()`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDAGetOwnershipRanges()`
@*/
PetscErrorCode DMStagGetOwnershipRanges(DM dm, const PetscInt *lx[], const PetscInt *ly[], const PetscInt *lz[])
{
@@ -669,27 +681,30 @@
}
/*@C
- DMStagCreateCompatibleDMStag - create a compatible DMStag with different dof/stratum
+ DMStagCreateCompatibleDMStag - create a compatible `DMSTAG` with different dof/stratum
Collective
Input Parameters:
-+ dm - the DMStag object
-- dof0,dof1,dof2,dof3 - number of dof on each stratum in the new DMStag
++ dm - the `DMSTAG` object
+. dof0 - number of dof on the first stratum in the new `DMSTAG`
+. dof1 - number of dof on the second stratum in the new `DMSTAG`
+. dof2 - number of dof on the third stratum in the new `DMSTAG`
+- dof3 - number of dof on the fourth stratum in the new `DMSTAG`
- Output Parameters:
-. newdm - the new, compatible DMStag
+ Output Parameter:
+. newdm - the new, compatible `DMSTAG`
+
+ Level: intermediate
Notes:
DOF supplied for strata too big for the dimension are ignored; these may be set to `0`.
- For example, for a 2-dimensional DMStag, `dof2` sets the number of dof per element,
- and `dof3` is unused. For a 3-dimensional DMStag, `dof3` sets the number of DOF per element.
+ For example, for a 2-dimensional `DMSTAG`, `dof2` sets the number of dof per element,
+ and `dof3` is unused. For a 3-dimensional `DMSTAG`, `dof3` sets the number of DOF per element.
In contrast to `DMDACreateCompatibleDMDA()`, coordinates are not reused.
- Level: intermediate
-
-.seealso: `DMSTAG`, `DMDACreateCompatibleDMDA()`, `DMGetCompatibility()`, `DMStagMigrateVec()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMDACreateCompatibleDMDA()`, `DMGetCompatibility()`, `DMStagMigrateVec()`
@*/
PetscErrorCode DMStagCreateCompatibleDMStag(DM dm, PetscInt dof0, PetscInt dof1, PetscInt dof2, PetscInt dof3, DM *newdm)
{
@@ -707,21 +722,21 @@
Not Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
. loc - location relative to an element
- c - component
Output Parameter:
. slot - index to use
+ Level: beginner
+
Notes:
Provides an appropriate index to use with `DMStagVecGetArray()` and friends.
This is required so that the user doesn't need to know about the ordering of
dof associated with each local element.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagVecGetArray()`, `DMStagVecGetArrayRead()`, `DMStagGetDOF()`, `DMStagGetEntriesPerElement()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagVecGetArray()`, `DMStagVecGetArrayRead()`, `DMStagGetDOF()`, `DMStagGetEntriesPerElement()`
@*/
PetscErrorCode DMStagGetLocationSlot(DM dm, DMStagStencilLocation loc, PetscInt c, PetscInt *slot)
{
@@ -740,24 +755,24 @@
}
/*@C
- DMStagMigrateVec - transfer a vector associated with a DMStag to a vector associated with a compatible DMStag
+ DMStagMigrateVec - transfer a vector associated with a `DMSTAG` to a vector associated with a compatible `DMSTAG`
Collective
Input Parameters:
-+ dm - the source DMStag object
++ dm - the source `DMSTAG` object
. vec - the source vector, compatible with `dm`
-. dmTo - the compatible destination DMStag object
+. dmTo - the compatible destination `DMSTAG` object
- vecTo - the destination vector, compatible with `dmTo`
+ Level: advanced
+
Notes:
Extra dof are ignored, and unfilled dof are zeroed.
Currently only implemented to migrate global vectors to global vectors.
- For the defintion of compatibility of `DM`s, see `DMGetCompatibility()`.
+ For the definition of compatibility of `DM`s, see `DMGetCompatibility()`.
- Level: advanced
-
-.seealso: `DMSTAG`, `DMStagCreateCompatibleDMStag()`, `DMGetCompatibility()`, `DMStagVecSplitToDMDA()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagCreateCompatibleDMStag()`, `DMGetCompatibility()`, `DMStagVecSplitToDMDA()`
@*/
PetscErrorCode DMStagMigrateVec(DM dm, Vec vec, DM dmTo, Vec vecTo)
{
@@ -871,25 +886,25 @@
This allows usage, for example, even in the periodic, 1-rank case, where
the inverse of the global-to-local map, even when restricted to on-rank
communication, is non-injective. This is at the cost of storing an additional
- VecScatter object inside each DMStag object.
+ VecScatter object inside each `DMSTAG` object.
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
+
+ Level: developer
Notes:
In normal usage, library users shouldn't be concerned with this function,
- as it is called during DMSetUp(), when required.
+ as it is called during `DMSetUp()`, when required.
Returns immediately if the internal map is already populated.
Developer Notes:
- This could, if desired, be moved up to a general DM routine. It would allow,
- for example, DMDA to support DMLocalToGlobal() with INSERT_VALUES,
+ This could, if desired, be moved up to a general `DM` routine. It would allow,
+ for example, `DMDA` to support `DMLocalToGlobal()` with `INSERT_VALUES`,
even in the single-rank periodic case.
- Level: developer
-
-.seealso: `DMSTAG`, `DMLocalToGlobal()`, `VecScatter`
+.seealso: [](chapter_stag), `DMSTAG`, `DMLocalToGlobal()`, `VecScatter`
@*/
PetscErrorCode DMStagPopulateLocalToGlobalInjective(DM dm)
{
@@ -954,15 +969,18 @@
Logically Collective
Input Parameter:
-. dm - the DMStag object
+. dm - the `DMSTAG` object
Output Parameters:
-. arrX,arrY,arrZ - local 1D coordinate arrays
++ arrX - local 1D coordinate arrays for x direction
+. arrY - local 1D coordinate arrays for y direction
+- arrZ - local 1D coordinate arrays for z direction
Level: intermediate
Notes:
- This function does not automatically perform a local->global scatter to populate global coordinates from the local coordinates. Thus, it may be required to explicitly perform these operations in some situations, as in the following partial example:
+ This function does not automatically perform a local->global scatter to populate global coordinates from the local coordinates.
+ Thus, it may be required to explicitly perform these operations in some situations, as in the following partial example:
```
PetscCall(DMGetCoordinateDM(dm,&cdm));
@@ -979,7 +997,7 @@
}
```
-.seealso: `DMSTAG`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`
@*/
PetscErrorCode DMStagRestoreProductCoordinateArrays(DM dm, void *arrX, void *arrY, void *arrZ)
{
@@ -993,15 +1011,15 @@
Logically Collective
- Input Parameter:
-. dm - the DMStag object
-
- Output Parameters:
-. arrX,arrY,arrZ - local 1D coordinate arrays
+ Input Parameters:
++ dm - the `DMSTAG` object
+. arrX - local 1D coordinate arrays for x direction
+. arrY - local 1D coordinate arrays for y direction
+- arrZ - local 1D coordinate arrays for z direction
Level: intermediate
-.seealso: `DMSTAG`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetProductCoordinateArrays()`, `DMStagGetProductCoordinateArraysRead()`
@*/
PetscErrorCode DMStagRestoreProductCoordinateArraysRead(DM dm, void *arrX, void *arrY, void *arrZ)
{
@@ -1011,20 +1029,22 @@
}
/*@C
- DMStagSetBoundaryTypes - set DMStag boundary types
+ DMStagSetBoundaryTypes - set `DMSTAG` boundary types
Logically Collective; boundaryType0, boundaryType1, and boundaryType2 must contain common values
Input Parameters:
-+ dm - the DMStag object
-- boundaryType0,boundaryType1,boundaryType2 - boundary types in each direction
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
++ dm - the `DMSTAG` object
+. boundaryTypeX - boundary type for x direction
+. boundaryTypeY - boundary type for y direction, not set for one dimensional problems
+- boundaryTypeZ - boundary type for z direction, not set for one and two dimensional problems
Level: advanced
-.seealso: `DMSTAG`, `DMBoundaryType`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDASetBoundaryType()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMBoundaryType`, `DMStagCreate1d()`, `DMStagCreate2d()`, `DMStagCreate3d()`, `DMDASetBoundaryType()`
@*/
PetscErrorCode DMStagSetBoundaryTypes(DM dm, DMBoundaryType boundaryType0, DMBoundaryType boundaryType1, DMBoundaryType boundaryType2)
{
@@ -1050,12 +1070,12 @@
Logically Collective; `dmtype` must contain common value
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- dmtype - DMtype for coordinates, either `DMSTAG` or `DMPRODUCT`
Level: advanced
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMGetCoordinateDM()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetUniformCoordinatesProduct()`, `DMType`
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMGetCoordinateDM()`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetUniformCoordinatesProduct()`, `DMType`
@*/
PetscErrorCode DMStagSetCoordinateDMType(DM dm, DMType dmtype)
{
@@ -1074,15 +1094,18 @@
Logically Collective; `dof0`, `dof1`, `dof2`, and `dof3` must contain common values
Input Parameters:
-+ dm - the DMStag object
-- dof0,dof1,dof2,dof3 - dof per stratum
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
++ dm - the `DMSTAG` object
+. dof0 - the number of points per 0-cell (vertex/node)
+. dof1 - the number of points per 1-cell (element in 1D, edge in 2D and 3D)
+. dof2 - the number of points per 2-cell (element in 2D, face in 3D)
+- dof3 - the number of points per 3-cell (element in 3D)
Level: advanced
-.seealso: `DMSTAG`, `DMDASetDof()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMDASetDof()`
@*/
PetscErrorCode DMStagSetDOF(DM dm, PetscInt dof0, PetscInt dof1, PetscInt dof2, PetscInt dof3)
{
@@ -1114,15 +1137,17 @@
Logically Collective; `nRanks0`, `nRanks1`, and `nRanks2` must contain common values
Input Parameters:
-+ dm - the DMStag object
-- nRanks0,nRanks1,nRanks2 - number of ranks in each direction
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
++ dm - the `DMSTAG` object
+. nRanks0 - number of ranks in the x direction
+. nRanks1 - number of ranks in the y direction
+- nRanks2 - number of ranks in the z direction
Level: developer
-.seealso: `DMSTAG`, `DMDASetNumProcs()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMDASetNumProcs()`
@*/
PetscErrorCode DMStagSetNumRanks(DM dm, PetscInt nRanks0, PetscInt nRanks1, PetscInt nRanks2)
{
@@ -1151,12 +1176,12 @@
Logically Collective; `stencilType` must contain common value
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- stencilType - the elementwise ghost stencil type: `DMSTAG_STENCIL_BOX`, `DMSTAG_STENCIL_STAR`, or `DMSTAG_STENCIL_NONE`
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetStencilType()`, `DMStagSetStencilWidth()`, `DMStagStencilType`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetStencilType()`, `DMStagSetStencilWidth()`, `DMStagStencilType`
@*/
PetscErrorCode DMStagSetStencilType(DM dm, DMStagStencilType stencilType)
{
@@ -1176,15 +1201,15 @@
Logically Collective; `stencilWidth` must contain common value
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- stencilWidth - stencil/halo/ghost width in elements
- Notes:
- The width value is not used when `DMSTAG_STENCIL_NONE` is specified.
-
Level: beginner
-.seealso: `DMSTAG`, `DMStagGetStencilWidth()`, `DMStagGetStencilType()`, `DMStagStencilType`
+ Note:
+ The width value is not used when `DMSTAG_STENCIL_NONE` is specified.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetStencilWidth()`, `DMStagGetStencilType()`, `DMStagStencilType`
@*/
PetscErrorCode DMStagSetStencilWidth(DM dm, PetscInt stencilWidth)
{
@@ -1205,15 +1230,17 @@
Logically Collective; `N0`, `N1`, and `N2` must contain common values
Input Parameters:
-+ dm - the DMStag object
-- N0,N1,N2 - global elementwise sizes
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
++ dm - the `DMSTAG` object
+. N0 - global elementwise size in the x direction
+. N1 - global elementwise size in the y direction
+- N2 - global elementwise size in the z direction
Level: advanced
-.seealso: `DMSTAG`, `DMStagGetGlobalSizes()`, `DMDASetSizes()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagGetGlobalSizes()`, `DMDASetSizes()`
@*/
PetscErrorCode DMStagSetGlobalSizes(DM dm, PetscInt N0, PetscInt N1, PetscInt N2)
{
@@ -1239,15 +1266,17 @@
Logically Collective; `lx`, `ly`, and `lz` must contain common values
Input Parameters:
-+ dm - the DMStag object
-- lx,ly,lz - element counts for each rank in each direction
-
- Notes:
- Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
++ dm - the `DMSTAG` object
+. lx - element counts for each rank in the x direction
+. ly - element counts for each rank in the y direction
+- lz - element counts for each rank in the z direction
Level: developer
-.seealso: `DMSTAG`, `DMStagSetGlobalSizes()`, `DMStagGetOwnershipRanges()`, `DMDASetOwnershipRanges()`
+ Note:
+ Arguments corresponding to higher dimensions are ignored for 1D and 2D grids. These arguments may be set to `NULL` in this case.
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagSetGlobalSizes()`, `DMStagGetOwnershipRanges()`, `DMDASetOwnershipRanges()`
@*/
PetscErrorCode DMStagSetOwnershipRanges(DM dm, PetscInt const *lx, PetscInt const *ly, PetscInt const *lz)
{
@@ -1273,16 +1302,23 @@
}
/*@C
- DMStagSetUniformCoordinates - set DMStag coordinates to be a uniform grid
+ DMStagSetUniformCoordinates - set `DMSTAG` coordinates to be a uniform grid
Collective
Input Parameters:
-+ dm - the DMStag object
-- xmin,xmax,ymin,ymax,zmin,zmax - maximum and minimum global coordinate values
++ dm - the `DMSTAG` object
+. xmin - minimum global coordinate value in the x direction
+. xmax - maximum global coordinate values in the x direction
+. ymin - minimum global coordinate value in the y direction
+. ymax - maximum global coordinate value in the y direction
+. zmin - minimum global coordinate value in the z direction
+- zmax - maximum global coordinate value in the z direction
+
+ Level: advanced
Notes:
- DMStag supports 2 different types of coordinate DM: `DMSTAG` and `DMPRODUCT`.
+ `DMSTAG` supports 2 different types of coordinate DM: `DMSTAG` and `DMPRODUCT`.
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
Local coordinates are populated (using `DMSetCoordinatesLocal()`), linearly
@@ -1293,9 +1329,7 @@
i.e. two points are equivalent if their difference is a multiple of $($`xmax` $-$ `xmin` $)$
in the x direction, $($ `ymax` $-$ `ymin` $)$ in the y direction, and $($ `zmax` $-$ `zmin` $)$ in the z direction.
- Level: advanced
-
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagSetCoordinateDMType()`, `DMGetCoordinateDM()`, `DMGetCoordinates()`, `DMDASetUniformCoordinates()`, `DMBoundaryType`
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagSetCoordinateDMType()`, `DMGetCoordinateDM()`, `DMGetCoordinates()`, `DMDASetUniformCoordinates()`, `DMBoundaryType`
@*/
PetscErrorCode DMStagSetUniformCoordinates(DM dm, PetscReal xmin, PetscReal xmax, PetscReal ymin, PetscReal ymax, PetscReal zmin, PetscReal zmax)
{
@@ -1317,26 +1351,31 @@
}
/*@C
- DMStagSetUniformCoordinatesExplicit - set DMStag coordinates to be a uniform grid, storing all values
+ DMStagSetUniformCoordinatesExplicit - set `DMSTAG` coordinates to be a uniform grid, storing all values
Collective
Input Parameters:
-+ dm - the DMStag object
-- xmin,xmax,ymin,ymax,zmin,zmax - maximum and minimum global coordinate values
++ dm - the `DMSTAG` object
+. xmin - minimum global coordinate value in the x direction
+. xmax - maximum global coordinate values in the x direction
+. ymin - minimum global coordinate value in the y direction
+. ymax - maximum global coordinate value in the y direction
+. zmin - minimum global coordinate value in the z direction
+- zmax - maximum global coordinate value in the z direction
+
+ Level: beginner
Notes:
- DMStag supports 2 different types of coordinate DM: either another DMStag, or a DMProduct.
- If the grid is orthogonal, using DMProduct should be more efficient.
+ `DMSTAG` supports 2 different types of coordinate `DM`: either another `DMSTAG`, or a `DMPRODUCT`.
+ If the grid is orthogonal, using `DMPRODUCT` should be more efficient.
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
See the manual page for `DMStagSetUniformCoordinates()` for information on how
coordinates for dummy cells outside the physical domain boundary are populated.
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagSetCoordinateDMType()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesProduct()`, `DMStagSetCoordinateDMType()`
@*/
PetscErrorCode DMStagSetUniformCoordinatesExplicit(DM dm, PetscReal xmin, PetscReal xmax, PetscReal ymin, PetscReal ymax, PetscReal zmin, PetscReal zmax)
{
@@ -1371,27 +1410,32 @@
/*@C
DMStagSetUniformCoordinatesProduct - create uniform coordinates, as a product of 1D arrays
- Set the coordinate DM to be a DMProduct of 1D DMStag objects, each of which have a coordinate DM (also a 1d DMStag) holding uniform coordinates.
+ Set the coordinate `DM` to be a `DMPRODUCT` of 1D `DMSTAG` objects, each of which have a coordinate `DM` (also a 1d `DMSTAG`) holding uniform coordinates.
Collective
Input Parameters:
-+ dm - the DMStag object
-- xmin,xmax,ymin,ymax,zmin,zmax - maximum and minimum global coordinate values
++ dm - the `DMSTAG` object
+. xmin - minimum global coordinate value in the x direction
+. xmax - maximum global coordinate values in the x direction
+. ymin - minimum global coordinate value in the y direction
+. ymax - maximum global coordinate value in the y direction
+. zmin - minimum global coordinate value in the z direction
+- zmax - maximum global coordinate value in the z direction
+
+ Level: intermediate
Notes:
Arguments corresponding to higher dimensions are ignored for 1D and 2D grids.
- The per-dimension 1-dimensional DMStag objects that comprise the product
+ The per-dimension 1-dimensional `DMSTAG` objects that comprise the product
always have active 0-cells (vertices, element boundaries) and 1-cells
(element centers).
See the manual page for `DMStagSetUniformCoordinates()` for information on how
coordinates for dummy cells outside the physical domain boundary are populated.
- Level: intermediate
-
-.seealso: `DMSTAG`, `DMPRODUCT`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetCoordinateDMType()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMPRODUCT`, `DMStagSetUniformCoordinates()`, `DMStagSetUniformCoordinatesExplicit()`, `DMStagSetCoordinateDMType()`
@*/
PetscErrorCode DMStagSetUniformCoordinatesProduct(DM dm, PetscReal xmin, PetscReal xmax, PetscReal ymin, PetscReal ymax, PetscReal zmin, PetscReal zmax)
{
@@ -1469,8 +1513,18 @@
Logically Collective
+ Input Parameters:
++ dm - the `DMSTAG` object
+- vec - the `Vec` object
+
+ Output Parameter:
+. array - the array
+
+ Level: beginner
+
+ Note:
This function returns a (dim+1)-dimensional array for a dim-dimensional
- DMStag.
+ `DMSTAG`.
The first 1-3 dimensions indicate an element in the global
numbering, using the standard C ordering.
@@ -1479,27 +1533,17 @@
of freedom with respect to this element, for example corresponding to
the element or one of its neighboring faces, edges, or vertices.
- For example, for a 3D DMStag, indexing is `array[k][j][i][idx]`, where `k` is the
+ For example, for a 3D `DMSTAG`, indexing is `array[k][j][i][idx]`, where `k` is the
index in the z-direction, `j` is the index in the y-direction, and `i` is the
index in the x-direction.
`idx` is obtained with `DMStagGetLocationSlot()`, since the correct offset
- into the $(d+1)$-dimensional C array for a $d$-dimensional DMStag depends on the grid size and the number
+ into the $(d+1)$-dimensional C array for a $d$-dimensional `DMSTAG` depends on the grid size and the number
of DOF stored at each location.
- Input Parameters:
-+ dm - the DMStag object
-- vec - the `Vec` object
-
- Output Parameters:
-. array - the array
-
- Notes:
`DMStagVecRestoreArray()` must be called, once finished with the array
- Level: beginner
-
-.seealso: `DMSTAG`, `DMStagVecGetArrayRead()`, `DMStagGetLocationSlot()`, `DMGetLocalVector()`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMCreateGlobalVector()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagVecGetArrayRead()`, `DMStagGetLocationSlot()`, `DMGetLocalVector()`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMCreateGlobalVector()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`
@*/
PetscErrorCode DMStagVecGetArray(DM dm, Vec vec, void *array)
{
@@ -1537,18 +1581,18 @@
See the man page for `DMStagVecGetArray()` for more information.
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- vec - the `Vec` object
- Output Parameters:
+ Output Parameter:
. array - the read-only array
- Notes:
- `DMStagVecRestoreArrayRead()` must be called, once finished with the array
-
Level: beginner
-.seealso: `DMSTAG`, `DMStagVecGetArrayRead()`, `DMStagGetLocationSlot()`, `DMGetLocalVector()`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMCreateGlobalVector()`, `DMDAVecGetArrayRead()`, `DMDAVecGetArrayDOFRead()`
+ Note:
+ `DMStagVecRestoreArrayRead()` must be called, once finished with the array
+
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagVecGetArrayRead()`, `DMStagGetLocationSlot()`, `DMGetLocalVector()`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMCreateGlobalVector()`, `DMDAVecGetArrayRead()`, `DMDAVecGetArrayDOFRead()`
@*/
PetscErrorCode DMStagVecGetArrayRead(DM dm, Vec vec, void *array)
{
@@ -1561,7 +1605,7 @@
PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
PetscCall(DMGetDimension(dm, &dim));
PetscCall(VecGetLocalSize(vec, &nLocal));
- PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMStag local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
+ PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMSTAG local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
switch (dim) {
case 1:
PetscCall(VecGetArray2dRead(vec, stag->nGhost[0], stag->entriesPerElement, stag->startGhost[0], 0, (PetscScalar ***)array));
@@ -1584,15 +1628,15 @@
Logically Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- vec - the `Vec` object
- Output Parameters:
+ Output Parameter:
. array - the array
Level: beginner
-.seealso: `DMSTAG`, `DMStagVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecRestoreArrayDOF()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecRestoreArrayDOF()`
@*/
PetscErrorCode DMStagVecRestoreArray(DM dm, Vec vec, void *array)
{
@@ -1605,7 +1649,7 @@
PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
PetscCall(DMGetDimension(dm, &dim));
PetscCall(VecGetLocalSize(vec, &nLocal));
- PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMStag local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
+ PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMSTAG local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
switch (dim) {
case 1:
PetscCall(VecRestoreArray2d(vec, stag->nGhost[0], stag->entriesPerElement, stag->startGhost[0], 0, (PetscScalar ***)array));
@@ -1628,15 +1672,15 @@
Logically Collective
Input Parameters:
-+ dm - the DMStag object
++ dm - the `DMSTAG` object
- vec - the Vec object
- Output Parameters:
+ Output Parameter:
. array - the read-only array
Level: beginner
-.seealso: `DMSTAG`, `DMStagVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, `DMDAVecRestoreArrayDOFRead()`
+.seealso: [](chapter_stag), `DMSTAG`, `DMStagVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, `DMDAVecRestoreArrayDOFRead()`
@*/
PetscErrorCode DMStagVecRestoreArrayRead(DM dm, Vec vec, void *array)
{
@@ -1649,7 +1693,7 @@
PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
PetscCall(DMGetDimension(dm, &dim));
PetscCall(VecGetLocalSize(vec, &nLocal));
- PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMStag local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
+ PetscCheck(nLocal == stag->entriesGhost, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMSTAG local size %" PetscInt_FMT, nLocal, stag->entriesGhost);
switch (dim) {
case 1:
PetscCall(VecRestoreArray2dRead(vec, stag->nGhost[0], stag->entriesPerElement, stag->startGhost[0], 0, (PetscScalar ***)array));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/tutorials/ex3.c petsc-3.18.5+dfsg1/src/dm/impls/stag/tutorials/ex3.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/tutorials/ex3.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/tutorials/ex3.c 2023-02-27 23:11:05.000000000 +0100
@@ -13,7 +13,7 @@
Boundary conditions give prescribed flow perpendicular to the boundaries,
and zero derivative perpendicular to them (free slip). This involves
- using a modifed stencil at the boundaries. Another option would be to
+ using a modified stencil at the boundaries. Another option would be to
use DM_BOUNDARY_GHOSTED in DMStagCreate3d() and a matrix-free operator (MATSHELL)
making use of the uniformly-available ghost layer.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/stag/tutorials/ex8.c petsc-3.18.5+dfsg1/src/dm/impls/stag/tutorials/ex8.c
--- petsc-3.18.4+dfsg1/src/dm/impls/stag/tutorials/ex8.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/stag/tutorials/ex8.c 2023-02-27 23:11:05.000000000 +0100
@@ -85,7 +85,7 @@
row.loc = DMSTAG_LEFT;
if (e == 0) {
- /* Left bondary conditions (Dirichlet) */
+ /* Left boundary conditions (Dirichlet) */
PetscScalar val;
val = 1.0;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/swarm/data_ex.c petsc-3.18.5+dfsg1/src/dm/impls/swarm/data_ex.c
--- petsc-3.18.4+dfsg1/src/dm/impls/swarm/data_ex.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/swarm/data_ex.c 2023-02-27 23:11:05.000000000 +0100
@@ -5,7 +5,7 @@
On each processor, have a DomainExchangerTopology.
This is a doubly-connected edge list which enumerates the
communication paths between connected processors. By numbering
-these paths we can always uniquely assign message identifers.
+these paths we can always uniquely assign message identifiers.
edge
10
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/swarm/swarm.c petsc-3.18.5+dfsg1/src/dm/impls/swarm/swarm.c
--- petsc-3.18.4+dfsg1/src/dm/impls/swarm/swarm.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/impls/swarm/swarm.c 2023-02-27 23:11:05.000000000 +0100
@@ -768,7 +768,7 @@
PetscFunctionBegin;
if (!swarm->field_registration_initialized) {
swarm->field_registration_initialized = PETSC_TRUE;
- PetscCall(DMSwarmRegisterPetscDatatypeField(dm, DMSwarmField_pid, 1, PETSC_INT64)); /* unique identifer */
+ PetscCall(DMSwarmRegisterPetscDatatypeField(dm, DMSwarmField_pid, 1, PETSC_INT64)); /* unique identifier */
PetscCall(DMSwarmRegisterPetscDatatypeField(dm, DMSwarmField_rank, 1, PETSC_INT)); /* used for communication */
}
PetscFunctionReturn(0);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/impls/swarm/swarmpic_sort.c petsc-3.18.5+dfsg1/src/dm/impls/swarm/swarmpic_sort.c
--- petsc-3.18.4+dfsg1/src/dm/impls/swarm/swarmpic_sort.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/impls/swarm/swarmpic_sort.c 2023-02-27 23:11:05.000000000 +0100
@@ -149,7 +149,7 @@
+ dm - a DMSwarm object
. e - the index of the cell
. npoints - the number of points in the cell
-- pidlist - array of the indices indentifying all points in cell e
+- pidlist - array of the indices identifying all points in cell e
Level: advanced
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/interface/dm.c petsc-3.18.5+dfsg1/src/dm/interface/dm.c
--- petsc-3.18.4+dfsg1/src/dm/interface/dm.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/interface/dm.c 2023-02-27 23:11:05.000000000 +0100
@@ -496,7 +496,7 @@
}
/*@C
- DMAppendOptionsPrefix - Appends an additional string to an already exising prefix used for searching for
+ DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
`DM` options in the options database.
Logically Collective on dm
@@ -1560,7 +1560,7 @@
Input Parameters:
+ dm - the `DM`
-- only - `PETSC_TRUE` if you only want matrix stucture
+- only - `PETSC_TRUE` if you only want matrix structure
Level: developer
@@ -1590,7 +1590,7 @@
Level: developer
Note:
- A `DM` may stash the array between instantations so using this routine may be more efficient than calling `PetscMalloc()`
+ A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
The array may contain nonzero values
@@ -4686,7 +4686,7 @@
Input Parameters:
+ dm - The `DM`
-- sf - The` PetscSF`
+- sf - The `PetscSF`
Level: intermediate
@@ -4955,7 +4955,7 @@
Notes:
The label already exists or will be added to the `DM` with `DMSetLabel()`.
- For example, a piecewise continous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
+ For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
@@ -8915,7 +8915,7 @@
/*@
DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
- Not collective because auxilary vectors are not parallel
+ Not collective because auxiliary vectors are not parallel
Input Parameters:
+ dm - The `DM`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/interface/ftn-auto/makefile petsc-3.18.5+dfsg1/src/dm/interface/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/dm/interface/ftn-auto/makefile 2023-01-31 07:00:47.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/dm/interface/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = dmperiodicityf.c dmgetf.c dmf.c dmcoordinatesf.c
+SOURCEC = dmperiodicityf.c dmgetf.c dmcoordinatesf.c dmf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/partitioner/tests/ex33.c petsc-3.18.5+dfsg1/src/dm/partitioner/tests/ex33.c
--- petsc-3.18.4+dfsg1/src/dm/partitioner/tests/ex33.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/partitioner/tests/ex33.c 2023-02-27 23:11:05.000000000 +0100
@@ -101,7 +101,7 @@
PetscCall(PetscObjectTypeCompareAny((PetscObject)p, &sequential, PETSCPARTITIONERCHACO, NULL));
if (sequential) goto finally;
- /* test partitioning a graph on a subset of the processess only */
+ /* test partitioning a graph on a subset of the processes only */
if (rank % 2) {
PetscCall(PetscPartitionerPartition(p, nparts, 0, NULL, NULL, NULL, targetSection, partSection, &partition));
} else {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/dm/tests/ex53.c petsc-3.18.5+dfsg1/src/dm/tests/ex53.c
--- petsc-3.18.4+dfsg1/src/dm/tests/ex53.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/dm/tests/ex53.c 2023-02-27 23:11:05.000000000 +0100
@@ -2,7 +2,7 @@
mx/my/mz - set the dimensions of the parent vector\n\
dim - set the dimensionality of the parent vector (2,3)\n\
sliceaxis - Integer describing the axis along which the sice will be selected (0-X, 1-Y, 2-Z)\n\
-sliceid - set the location where the slice will be extraced from the parent vector\n";
+sliceid - set the location where the slice will be extracted from the parent vector\n";
/*
This test checks the functionality of DMDACreatePatchIS when
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscksp.h90 petsc-3.18.5+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscksp.h90
--- petsc-3.18.4+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscksp.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscksp.h90 2023-02-27 23:28:35.000000000 +0100
@@ -381,21 +381,6 @@
PetscBool b ! PetscBool
PetscErrorCode z
end subroutine KSPRichardsonSetSelfScale
- subroutine KSPComputeOperator(a,b,c,z)
- import tKSP,tMat
- KSP a ! KSP
- MatType b ! MatType
- Mat c ! Mat
- PetscErrorCode z
- end subroutine KSPComputeOperator
- subroutine KSPComputeEigenvaluesExplicitly(a,b,c,d,z)
- import tKSP
- KSP a ! KSP
- PetscInt b ! PetscInt
- PetscReal c (*) ! PetscReal
- PetscReal d (*) ! PetscReal
- PetscErrorCode z
- end subroutine KSPComputeEigenvaluesExplicitly
subroutine KSPGuessSetFromOptions(a,z)
import tKSPGuess
KSPGuess a ! KSPGuess
@@ -445,13 +430,13 @@
PetscErrorCode z
end subroutine KSPSetUseFischerGuess
subroutine KSPSetGuess(a,b,z)
- import tKSPGuess,tKSP
+ import tKSP,tKSPGuess
KSP a ! KSP
KSPGuess b ! KSPGuess
PetscErrorCode z
end subroutine KSPSetGuess
subroutine KSPGetGuess(a,b,z)
- import tKSPGuess,tKSP
+ import tKSP,tKSPGuess
KSP a ! KSP
KSPGuess b ! KSPGuess
PetscErrorCode z
@@ -466,58 +451,6 @@
KSP a ! KSP
PetscErrorCode z
end subroutine KSPResetFromOptions
- subroutine KSPSetNormType(a,b,z)
- import tKSP
- KSP a ! KSP
- KSPNormType b ! KSPNormType
- PetscErrorCode z
- end subroutine KSPSetNormType
- subroutine KSPSetCheckNormIteration(a,b,z)
- import tKSP
- KSP a ! KSP
- PetscInt b ! PetscInt
- PetscErrorCode z
- end subroutine KSPSetCheckNormIteration
- subroutine KSPSetLagNorm(a,b,z)
- import tKSP
- KSP a ! KSP
- PetscBool b ! PetscBool
- PetscErrorCode z
- end subroutine KSPSetLagNorm
- subroutine KSPSetSupportedNorm(a,b,c,d,z)
- import tKSP
- KSP a ! KSP
- KSPNormType b ! KSPNormType
- PCSide c ! PCSide
- PetscInt d ! PetscInt
- PetscErrorCode z
- end subroutine KSPSetSupportedNorm
- subroutine KSPGetNormType(a,b,z)
- import tKSP
- KSP a ! KSP
- KSPNormType b ! KSPNormType
- PetscErrorCode z
- end subroutine KSPGetNormType
- subroutine KSPSetOperators(a,b,c,z)
- import tKSP,tMat
- KSP a ! KSP
- Mat b ! Mat
- Mat c ! Mat
- PetscErrorCode z
- end subroutine KSPSetOperators
- subroutine KSPGetOperators(a,b,c,z)
- import tKSP,tMat
- KSP a ! KSP
- Mat b ! Mat
- Mat c ! Mat
- PetscErrorCode z
- end subroutine KSPGetOperators
- subroutine KSPCreate(a,b,z)
- import tKSP
- MPI_Comm a ! MPI_Comm
- KSP b ! KSP
- PetscErrorCode z
- end subroutine KSPCreate
subroutine KSPGetResidualNorm(a,b,z)
import tKSP
KSP a ! KSP
@@ -583,6 +516,90 @@
Vec c ! Vec
PetscErrorCode z
end subroutine KSPCheckSolve
+ subroutine KSPInitialResidual(a,b,c,d,e,f,z)
+ import tKSP,tVec
+ KSP a ! KSP
+ Vec b ! Vec
+ Vec c ! Vec
+ Vec d ! Vec
+ Vec e ! Vec
+ Vec f ! Vec
+ PetscErrorCode z
+ end subroutine KSPInitialResidual
+ subroutine KSPUnwindPreconditioner(a,b,c,z)
+ import tKSP,tVec
+ KSP a ! KSP
+ Vec b ! Vec
+ Vec c ! Vec
+ PetscErrorCode z
+ end subroutine KSPUnwindPreconditioner
+ subroutine KSPComputeOperator(a,b,c,z)
+ import tKSP,tMat
+ KSP a ! KSP
+ MatType b ! MatType
+ Mat c ! Mat
+ PetscErrorCode z
+ end subroutine KSPComputeOperator
+ subroutine KSPComputeEigenvaluesExplicitly(a,b,c,d,z)
+ import tKSP
+ KSP a ! KSP
+ PetscInt b ! PetscInt
+ PetscReal c (*) ! PetscReal
+ PetscReal d (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine KSPComputeEigenvaluesExplicitly
+ subroutine KSPSetNormType(a,b,z)
+ import tKSP
+ KSP a ! KSP
+ KSPNormType b ! KSPNormType
+ PetscErrorCode z
+ end subroutine KSPSetNormType
+ subroutine KSPSetCheckNormIteration(a,b,z)
+ import tKSP
+ KSP a ! KSP
+ PetscInt b ! PetscInt
+ PetscErrorCode z
+ end subroutine KSPSetCheckNormIteration
+ subroutine KSPSetLagNorm(a,b,z)
+ import tKSP
+ KSP a ! KSP
+ PetscBool b ! PetscBool
+ PetscErrorCode z
+ end subroutine KSPSetLagNorm
+ subroutine KSPSetSupportedNorm(a,b,c,d,z)
+ import tKSP
+ KSP a ! KSP
+ KSPNormType b ! KSPNormType
+ PCSide c ! PCSide
+ PetscInt d ! PetscInt
+ PetscErrorCode z
+ end subroutine KSPSetSupportedNorm
+ subroutine KSPGetNormType(a,b,z)
+ import tKSP
+ KSP a ! KSP
+ KSPNormType b ! KSPNormType
+ PetscErrorCode z
+ end subroutine KSPGetNormType
+ subroutine KSPSetOperators(a,b,c,z)
+ import tKSP,tMat
+ KSP a ! KSP
+ Mat b ! Mat
+ Mat c ! Mat
+ PetscErrorCode z
+ end subroutine KSPSetOperators
+ subroutine KSPGetOperators(a,b,c,z)
+ import tKSP,tMat
+ KSP a ! KSP
+ Mat b ! Mat
+ Mat c ! Mat
+ PetscErrorCode z
+ end subroutine KSPGetOperators
+ subroutine KSPCreate(a,b,z)
+ import tKSP
+ MPI_Comm a ! MPI_Comm
+ KSP b ! KSP
+ PetscErrorCode z
+ end subroutine KSPCreate
subroutine KSPComputeExtremeSingularValues(a,b,c,z)
import tKSP
KSP a ! KSP
@@ -869,23 +886,6 @@
PetscBool b ! PetscBool
PetscErrorCode z
end subroutine KSPSetUseExplicitTranspose
- subroutine KSPInitialResidual(a,b,c,d,e,f,z)
- import tKSP,tVec
- KSP a ! KSP
- Vec b ! Vec
- Vec c ! Vec
- Vec d ! Vec
- Vec e ! Vec
- Vec f ! Vec
- PetscErrorCode z
- end subroutine KSPInitialResidual
- subroutine KSPUnwindPreconditioner(a,b,c,z)
- import tKSP,tVec
- KSP a ! KSP
- Vec b ! Vec
- Vec c ! Vec
- PetscErrorCode z
- end subroutine KSPUnwindPreconditioner
subroutine DMGlobalToLocalSolve(a,b,c,z)
import tDM,tVec
DM a ! DM
@@ -924,7 +924,7 @@
PetscErrorCode z
end subroutine MatLMVMSetJ0
subroutine MatLMVMSetJ0PC(a,b,z)
- import tMat,tPC
+ import tPC,tMat
Mat a ! Mat
PC b ! PC
PetscErrorCode z
@@ -942,7 +942,7 @@
PetscErrorCode z
end subroutine MatLMVMGetJ0
subroutine MatLMVMGetJ0PC(a,b,z)
- import tMat,tPC
+ import tPC,tMat
Mat a ! Mat
PC b ! PC
PetscErrorCode z
@@ -1134,7 +1134,7 @@
PetscErrorCode z
end subroutine MatSchurComplementComputeExplicitOperator
subroutine MatGetSchurComplement(a,b,c,d,e,f,g,h,i,j,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscpc.h90 petsc-3.18.5+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscpc.h90
--- petsc-3.18.4+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscpc.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/f90-mod/ftn-auto-interfaces/petscpc.h90 2023-02-27 23:28:35.000000000 +0100
@@ -72,7 +72,7 @@
PetscErrorCode z
end subroutine PCASMSetSubMatType
subroutine PCBDDCSetDiscreteGradient(a,b,c,d,e,f,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscInt c ! PetscInt
@@ -82,7 +82,7 @@
PetscErrorCode z
end subroutine PCBDDCSetDiscreteGradient
subroutine PCBDDCSetDivergenceMat(a,b,c,d,z)
- import tIS,tPC,tMat
+ import tPC,tMat,tIS
PC a ! PC
Mat b ! Mat
PetscBool c ! PetscBool
@@ -90,32 +90,32 @@
PetscErrorCode z
end subroutine PCBDDCSetDivergenceMat
subroutine PCBDDCSetChangeOfBasisMat(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscBool c ! PetscBool
PetscErrorCode z
end subroutine PCBDDCSetChangeOfBasisMat
subroutine PCBDDCSetPrimalVerticesIS(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetPrimalVerticesIS
subroutine PCBDDCGetPrimalVerticesIS(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCGetPrimalVerticesIS
subroutine PCBDDCSetPrimalVerticesLocalIS(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetPrimalVerticesLocalIS
subroutine PCBDDCGetPrimalVerticesLocalIS(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
@@ -133,49 +133,49 @@
PetscErrorCode z
end subroutine PCBDDCSetLevels
subroutine PCBDDCSetDirichletBoundaries(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetDirichletBoundaries
subroutine PCBDDCSetDirichletBoundariesLocal(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetDirichletBoundariesLocal
subroutine PCBDDCSetNeumannBoundaries(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetNeumannBoundaries
subroutine PCBDDCSetNeumannBoundariesLocal(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCSetNeumannBoundariesLocal
subroutine PCBDDCGetDirichletBoundaries(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCGetDirichletBoundaries
subroutine PCBDDCGetDirichletBoundariesLocal(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCGetDirichletBoundariesLocal
subroutine PCBDDCGetNeumannBoundaries(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
end subroutine PCBDDCGetNeumannBoundaries
subroutine PCBDDCGetNeumannBoundariesLocal(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
@@ -190,14 +190,14 @@
PetscErrorCode z
end subroutine PCBDDCSetLocalAdjacencyGraph
subroutine PCBDDCSetDofsSplittingLocal(a,b,c,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
PetscInt b ! PetscInt
IS c (*) ! IS
PetscErrorCode z
end subroutine PCBDDCSetDofsSplittingLocal
subroutine PCBDDCSetDofsSplitting(a,b,c,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
PetscInt b ! PetscInt
IS c (*) ! IS
@@ -300,20 +300,20 @@
PetscErrorCode z
end subroutine PCDeflationSetSpaceToCompute
subroutine PCDeflationSetSpace(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscBool c ! PetscBool
PetscErrorCode z
end subroutine PCDeflationSetSpace
subroutine PCDeflationSetProjectionNullSpaceMat(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCDeflationSetProjectionNullSpaceMat
subroutine PCDeflationSetCoarseMat(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -506,27 +506,27 @@
PetscErrorCode z
end subroutine PCFieldSplitSetBlockSize
subroutine PCFieldSplitSetSchurPre(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PCFieldSplitSchurPreType b ! PCFieldSplitSchurPreType
Mat c ! Mat
PetscErrorCode z
end subroutine PCFieldSplitSetSchurPre
subroutine PCFieldSplitGetSchurPre(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PCFieldSplitSchurPreType b ! PCFieldSplitSchurPreType
Mat c ! Mat
PetscErrorCode z
end subroutine PCFieldSplitGetSchurPre
subroutine PCFieldSplitSchurGetS(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCFieldSplitSchurGetS
subroutine PCFieldSplitSchurRestoreS(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -604,13 +604,13 @@
PetscErrorCode z
end subroutine PCFieldSplitSetDetectSaddlePoint
subroutine PCGalerkinSetRestriction(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCGalerkinSetRestriction
subroutine PCGalerkinSetInterpolation(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -745,7 +745,7 @@
PetscErrorCode z
end subroutine PCGASMSetSortIndices
subroutine PCGASMCreateSubdomains2D(a,b,c,d,e,f,g,h,i,j,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
PetscInt b ! PetscInt
PetscInt c ! PetscInt
@@ -801,7 +801,7 @@
PetscErrorCode z
end subroutine PCHPDDMHasNeumannMat
subroutine PCHPDDMSetRHSMat(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -825,26 +825,26 @@
PetscErrorCode z
end subroutine PCHPDDMGetSTShareSubKSP
subroutine PCHPDDMSetDeflationMat(a,b,c,z)
- import tIS,tPC,tMat
+ import tPC,tMat,tIS
PC a ! PC
IS b ! IS
Mat c ! Mat
PetscErrorCode z
end subroutine PCHPDDMSetDeflationMat
subroutine PCHYPRESetDiscreteGradient(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCHYPRESetDiscreteGradient
subroutine PCHYPRESetDiscreteCurl(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCHYPRESetDiscreteCurl
subroutine PCHYPRESetInterpolations(a,b,c,d,e,f,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
@@ -854,13 +854,13 @@
PetscErrorCode z
end subroutine PCHYPRESetInterpolations
subroutine PCHYPRESetAlphaPoissonMatrix(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCHYPRESetAlphaPoissonMatrix
subroutine PCHYPRESetBetaPoissonMatrix(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -946,19 +946,19 @@
PetscErrorCode z
end subroutine PCKSPGetKSP
subroutine PCLMVMSetMatLMVM(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCLMVMSetMatLMVM
subroutine PCLMVMGetMatLMVM(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
end subroutine PCLMVMGetMatLMVM
subroutine PCLMVMSetIS(a,b,z)
- import tIS,tPC
+ import tPC,tIS
PC a ! PC
IS b ! IS
PetscErrorCode z
@@ -975,14 +975,14 @@
PetscErrorCode z
end subroutine PCMGGetCoarseSolve
subroutine PCMGSetInterpolation(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine PCMGSetInterpolation
subroutine PCMGSetOperators(a,b,c,d,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
@@ -990,21 +990,21 @@
PetscErrorCode z
end subroutine PCMGSetOperators
subroutine PCMGGetInterpolation(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine PCMGGetInterpolation
subroutine PCMGSetRestriction(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine PCMGSetRestriction
subroutine PCMGGetRestriction(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
@@ -1025,14 +1025,14 @@
PetscErrorCode z
end subroutine PCMGGetRScale
subroutine PCMGSetInjection(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine PCMGSetInjection
subroutine PCMGGetInjection(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c ! Mat
@@ -1223,7 +1223,7 @@
PetscErrorCode z
end subroutine PCRedundantSetNumber
subroutine PCRedundantSetScatter(a,b,c,z)
- import tVecScatter,tPC
+ import tPC,tVecScatter
PC a ! PC
VecScatter b ! VecScatter
VecScatter c ! VecScatter
@@ -1236,7 +1236,7 @@
PetscErrorCode z
end subroutine PCRedundantGetKSP
subroutine PCRedundantGetOperators(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
Mat c ! Mat
@@ -1383,7 +1383,7 @@
PetscErrorCode z
end subroutine PCTelescopeSetIgnoreKSPComputeOperators
subroutine PCTelescopeGetDM(a,b,z)
- import tDM,tPC
+ import tPC,tDM
PC a ! PC
DM b ! DM
PetscErrorCode z
@@ -1412,13 +1412,13 @@
PetscErrorCode z
end subroutine PCSetFromOptions
subroutine PCSetDM(a,b,z)
- import tDM,tPC
+ import tPC,tDM
PC a ! PC
DM b ! DM
PetscErrorCode z
end subroutine PCSetDM
subroutine PCGetDM(a,b,z)
- import tDM,tPC
+ import tPC,tDM
PC a ! PC
DM b ! DM
PetscErrorCode z
@@ -1480,7 +1480,7 @@
PetscErrorCode z
end subroutine PCApply
subroutine PCMatApply(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
Mat c ! Mat
@@ -1581,7 +1581,7 @@
PetscErrorCode z
end subroutine PCSetUpOnBlocks
subroutine PCSetOperators(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
Mat c ! Mat
@@ -1600,14 +1600,14 @@
PetscErrorCode z
end subroutine PCGetReusePreconditioner
subroutine PCGetOperators(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
Mat c ! Mat
PetscErrorCode z
end subroutine PCGetOperators
subroutine PCFactorGetMatrix(a,b,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
Mat b ! Mat
PetscErrorCode z
@@ -1625,7 +1625,7 @@
PetscErrorCode z
end subroutine PCPostSolve
subroutine PCComputeOperator(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
MatType b ! MatType
Mat c ! Mat
@@ -1640,14 +1640,14 @@
PetscErrorCode z
end subroutine PCSetCoordinates
subroutine PCGetInterpolations(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c (*) ! Mat
PetscErrorCode z
end subroutine PCGetInterpolations
subroutine PCGetCoarseOperators(a,b,c,z)
- import tMat,tPC
+ import tPC,tMat
PC a ! PC
PetscInt b ! PetscInt
Mat c (*) ! Mat
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/cg/gltr/gltr.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/cg/gltr/gltr.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/cg/gltr/gltr.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/cg/gltr/gltr.c 2023-02-27 23:11:05.000000000 +0100
@@ -667,7 +667,7 @@
}
/***************************************************************************/
- /* Switch to contructing the Lanczos basis by way of the conjugate */
+ /* Switch to constructing the Lanczos basis by way of the conjugate */
/* directions. */
/***************************************************************************/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/cheby/cheby.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/cheby/cheby.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/cheby/cheby.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/cheby/cheby.c 2023-02-27 23:11:05.000000000 +0100
@@ -622,7 +622,7 @@
Only support for left preconditioning.
- Chebyshev is configured as a smoother by default, targetting the "upper" part of the spectrum.
+ Chebyshev is configured as a smoother by default, targeting the "upper" part of the spectrum.
The user should call `KSPChebyshevSetEigenvalues()` to get eigenvalue estimates.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c 2023-02-27 23:11:05.000000000 +0100
@@ -134,7 +134,7 @@
PetscCall(PetscLogEventBegin(KSP_AGMRESRoddec, ksp, 0, 0, 0));
PetscCall(PetscArrayzero(agmres->Rloc, N * N));
/* check input arguments */
- PetscCheck(nvec >= 1, PetscObjectComm((PetscObject)ksp), PETSC_ERR_ARG_OUTOFRANGE, "The number of input vectors shoud be positive");
+ PetscCheck(nvec >= 1, PetscObjectComm((PetscObject)ksp), PETSC_ERR_ARG_OUTOFRANGE, "The number of input vectors should be positive");
PetscCall(VecGetLocalSize(VEC_V(0), &nloc));
PetscCall(PetscBLASIntCast(nloc, &bnloc));
PetscCheck(nvec <= nloc, PetscObjectComm((PetscObject)ksp), PETSC_ERR_ARG_WRONG, "In QR factorization, the number of local rows should be greater or equal to the number of columns");
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/dgmres/README petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/dgmres/README
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/dgmres/README 2022-06-29 08:00:07.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/dgmres/README 2023-02-27 23:11:05.000000000 +0100
@@ -24,4 +24,4 @@
1. The current version shows many fluctuations in the residual history with the left preconditioning, so you should
consider using a right preconditioning with the option -ksp_right_pc
2. This version does not support complex arithmetics
-3. It is not compliant when a scaling is done during the appication of the preconditioner
+3. It is not compliant when a scaling is done during the application of the preconditioner
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/lgmres/lgmres.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/lgmres/lgmres.c 2022-10-26 15:00:16.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/lgmres/lgmres.c 2023-02-27 23:11:05.000000000 +0100
@@ -272,7 +272,7 @@
for (ii = 0; ii < aug_dim; ii++) AUG_ORDER(ii)++;
AUG_ORDER(spot) = 1;
- /*now add the A*aug vector to A_AUGVEC(spot) - this is independ. of preconditioning type*/
+ /*now add the A*aug vector to A_AUGVEC(spot) - this is independent of preconditioning type*/
/* want V*H*y - y is in GRS, V is in VEC_VV and H is in HES */
/* first do H+*y */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c 2023-02-27 23:11:05.000000000 +0100
@@ -747,7 +747,7 @@
Note:
A heuristic is to set this to be comparable to the largest eigenvalue of the preconditioned operator.
- This can be acheived with PETSc itself by using a few iterations of a Krylov method.
+ This can be achieved with PETSc itself by using a few iterations of a Krylov method.
See `KSPComputeEigenvalues()` (and note the caveats there).
.seealso: [](chapter_ksp), `KSPPIPEFGMRES`, `KSPComputeEigenvalues()`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/lsqr/lsqr.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/lsqr/lsqr.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/lsqr/lsqr.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/lsqr/lsqr.c 2023-02-27 23:11:05.000000000 +0100
@@ -610,7 +610,7 @@
Notes:
Supports non-square (rectangular) matrices.
- This variant, when applied with no preconditioning is identical to the original algorithm in exact arithematic; however, in practice, with no preconditioning
+ This variant, when applied with no preconditioning is identical to the original algorithm in exact arithmetic; however, in practice, with no preconditioning
due to inexact arithmetic, it can converge differently. Hence when no preconditioner is used (`PCType` `PCNONE`) it automatically reverts to the original algorithm.
With the PETSc built-in preconditioners, such as `PCICC`, one should call `KSPSetOperators`(ksp,A,A'*A)) since the preconditioner needs to work
@@ -622,7 +622,7 @@
In exact arithmetic the LSQR method (with no preconditioning) is identical to the `KSPCG` algorithm applied to the normal equations.
The preconditioned variant was implemented by Bas van't Hof and is essentially a left preconditioning for the Normal Equations.
- It appears the implementation with preconditioner track the true norm of the residual and uses that in the convergence test.
+ It appears the implementation with preconditioning tracks the true norm of the residual and uses that in the convergence test.
Developer Note:
How is this related to the `KSPCGNE` implementation? One difference is that `KSPCGNE` applies
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/impls/qcg/qcg.c petsc-3.18.5+dfsg1/src/ksp/ksp/impls/qcg/qcg.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/impls/qcg/qcg.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/impls/qcg/qcg.c 2023-02-27 23:11:05.000000000 +0100
@@ -54,7 +54,7 @@
q(s) = g^T * s + 0.5 * s^T * H * s
- which satisfies the Euclidian Norm trust region constraint
+ which satisfies the Euclidean Norm trust region constraint
|| D * s || <= delta,
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/interface/eige.c petsc-3.18.5+dfsg1/src/ksp/ksp/interface/eige.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/interface/eige.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/interface/eige.c 2023-02-27 23:11:05.000000000 +0100
@@ -101,7 +101,7 @@
`KSPMonitorSingularValue()` (which can be set with option -ksp_monitor_singular_value)
to print the singular values at each iteration of the linear solve.
- The preconditoner operator, rhs vector, solution vectors should be
+ The preconditioner operator, rhs vector, solution vectors should be
set before this routine is called. i.e use `KSPSetOperators()`, `KSPSolve()`
Level: advanced
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/interface/ftn-auto/makefile petsc-3.18.5+dfsg1/src/ksp/ksp/interface/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/ksp/ksp/interface/ftn-auto/makefile 2023-01-31 07:00:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/interface/ftn-auto/makefile 2023-02-27 23:28:31.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = eigef.c iguessf.c itclf.c itcreatef.c iterativf.c itfuncf.c itresf.c
+SOURCEC = iguessf.c itclf.c iterativf.c itresf.c eigef.c itcreatef.c itfuncf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/interface/itcreate.c petsc-3.18.5+dfsg1/src/ksp/ksp/interface/itcreate.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/interface/itcreate.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/interface/itcreate.c 2023-02-27 23:11:05.000000000 +0100
@@ -491,7 +491,7 @@
.ve
The rationale for this support is so that when creating a `TS`, `SNES`, or `KSP` the hierarchy
- of underlying objects (i.e. `SNES`, `KSP`, `PC`, `Mat`) and their livespans can be completely
+ of underlying objects (i.e. `SNES`, `KSP`, `PC`, `Mat`) and their lifespans can be completely
managed by the top most level object (i.e. the `TS`, `SNES`, or `KSP`). Another way to look
at this is when you create a `SNES` you do not NEED to create a `KSP` and attach it to
the `SNES` object (the `SNES` object manages it for you). Similarly when you create a `KSP`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/interface/itfunc.c petsc-3.18.5+dfsg1/src/ksp/ksp/interface/itfunc.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/interface/itfunc.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/interface/itfunc.c 2023-02-27 23:11:05.000000000 +0100
@@ -169,8 +169,8 @@
The (harmonic) Ritz pairs are given in order of increasing (harmonic) Ritz values in modulus.
- The Ritz pairs do not neccessarily accurately reflect the eigenvalues and eigenvectors of the operator, consider the
- excellant package `SLEPc` if accurate values are required.
+ The Ritz pairs do not necessarily accurately reflect the eigenvalues and eigenvectors of the operator, consider the
+ excellent package `SLEPc` if accurate values are required.
Level: advanced
@@ -279,7 +279,7 @@
}
/*@
- KSPSetSkipPCSetFromOptions - prevents `KSPSetFromOptions()` from calling `PCSetFromOptions()`. This is used if the same PC is shared by more than one KSP so its options are not resetable for each KSP
+ KSPSetSkipPCSetFromOptions - prevents `KSPSetFromOptions()` from calling `PCSetFromOptions()`. This is used if the same `PC` is shared by more than one `KSP` so its options are not resettable for each `KSP`
Collective
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/tests/ex11.c petsc-3.18.5+dfsg1/src/ksp/ksp/tests/ex11.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/tests/ex11.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/tests/ex11.c 2023-02-27 23:11:05.000000000 +0100
@@ -189,7 +189,7 @@
VecScatter uscat, pscat;
Mat A11, A22;
- /* grab matrices and create the compatable u,p vectors */
+ /* grab matrices and create the compatible u,p vectors */
PetscCall(MatCreateSubMatrix(A, isu, isu, MAT_INITIAL_MATRIX, &A11));
PetscCall(MatCreateSubMatrix(A, isp, isp, MAT_INITIAL_MATRIX, &A22));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex10.c petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex10.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex10.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex10.c 2023-02-27 23:11:05.000000000 +0100
@@ -126,7 +126,7 @@
PetscFunctionReturn(0);
}
-/* ATTENTION: this is the example used in the Profiling chaper of the PETSc manual,
+/* ATTENTION: this is the example used in the Profiling chapter of the PETSc manual,
where we referenced its profiling stages, preloading and output etc.
When you modify it, please make sure it is still consistent with the manual.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex70.c petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex70.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex70.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex70.c 2023-02-27 23:11:05.000000000 +0100
@@ -599,12 +599,12 @@
PetscCall(DMSwarmSortGetPointsPerCell(dm, e, &npoints_e, &plist_e));
PetscCall(PetscMalloc1(npoints, &nnlist));
- /* find nearest neighour points in this cell */
+ /* find nearest neighbour points in this cell */
PetscCall(DMSwarmGetField(dm, DMSwarmPICField_coor, NULL, NULL, (void **)&swarm_coor));
PetscCall(DMSwarmGetField(dm, DMSwarmPICField_cellid, NULL, NULL, (void **)&swarm_cellid));
for (q = 0; q < npoints; q++) {
- PetscInt qn, nearest_neighour = -1;
- PetscReal sep, min_sep = PETSC_MAX_REAL;
+ PetscInt qn, nearest_neighbour = -1;
+ PetscReal sep, min_sep = PETSC_MAX_REAL;
coor_q = &xp[dim * q];
for (qn = 0; qn < npoints_e; qn++) {
@@ -612,12 +612,12 @@
sep = 0.0;
for (d = 0; d < dim; d++) sep += (coor_q[d] - coor_qn[d]) * (coor_q[d] - coor_qn[d]);
if (sep < min_sep) {
- nearest_neighour = plist_e[qn];
- min_sep = sep;
+ nearest_neighbour = plist_e[qn];
+ min_sep = sep;
}
}
- PetscCheck(nearest_neighour != -1, PETSC_COMM_SELF, PETSC_ERR_USER, "Cell %" PetscInt_FMT " is empty - cannot initialize using nearest neighbours", e);
- nnlist[q] = nearest_neighour;
+ PetscCheck(nearest_neighbour != -1, PETSC_COMM_SELF, PETSC_ERR_USER, "Cell %" PetscInt_FMT " is empty - cannot initialize using nearest neighbours", e);
+ nnlist[q] = nearest_neighbour;
}
PetscCall(DMSwarmRestoreField(dm, DMSwarmPICField_cellid, NULL, NULL, (void **)&swarm_cellid));
PetscCall(DMSwarmRestoreField(dm, DMSwarmPICField_coor, NULL, NULL, (void **)&swarm_coor));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex9.c petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex9.c
--- petsc-3.18.4+dfsg1/src/ksp/ksp/tutorials/ex9.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/ksp/tutorials/ex9.c 2023-02-27 23:11:05.000000000 +0100
@@ -146,7 +146,7 @@
PetscCall(PetscLogFlops(2.0 * ldim));
/*
- End curent profiling stage
+ End current profiling stage
*/
PetscCall(PetscLogStagePop());
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/bddc/bddcgraph.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/bddc/bddcgraph.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/bddc/bddcgraph.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/bddc/bddcgraph.c 2023-02-27 23:11:05.000000000 +0100
@@ -205,7 +205,7 @@
PetscFunctionReturn(0);
}
PetscCall(PetscCalloc1(graph->ncc, &mark));
- /* loop on ccs to evalute number of faces, edges and vertices */
+ /* loop on ccs to evaluate number of faces, edges and vertices */
nfc = 0;
nec = 0;
nvc = 0;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/bddc/bddcprivate.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/bddc/bddcprivate.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/bddc/bddcprivate.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/bddc/bddcprivate.c 2023-02-27 23:11:05.000000000 +0100
@@ -4572,7 +4572,7 @@
if (n_constraints) PetscCall(MatDestroy(&C_CR));
PetscCall(PetscLogEventEnd(PC_BDDC_CorrectionSetUp[pcbddc->current_level], pc, 0, 0, 0));
- /* Checking coarse_sub_mat and coarse basis functios */
+ /* Checking coarse_sub_mat and coarse basis functions */
/* Symmetric case : It should be \Phi^{(j)^T} A^{(j)} \Phi^{(j)}=coarse_sub_mat */
/* Non-symmetric case : It should be \Psi^{(j)^T} A^{(j)} \Phi^{(j)}=coarse_sub_mat */
if (pcbddc->dbg_flag) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/cp/cp.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/cp/cp.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/cp/cp.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/cp/cp.c 2023-02-27 23:11:05.000000000 +0100
@@ -145,7 +145,7 @@
.ve
Notes:
- This proceedure can also be done with block columns or any groups of columns
+ This procedure can also be done with block columns or any groups of columns
but this is not coded.
These "projections" can be done simultaneously for all columns (similar to Jacobi)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/deflation/deflation.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/deflation/deflation.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/deflation/deflation.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/deflation/deflation.c 2023-02-27 23:11:05.000000000 +0100
@@ -609,7 +609,7 @@
PetscCall(KSPAppendOptionsPrefix(def->WtAWinv, "deflation_tel_"));
PetscCall(PCSetFromOptions(pcinner));
PetscCall(PetscObjectTypeCompare((PetscObject)pcinner, PCTELESCOPE, &match));
- PetscCheck(match, comm, PETSC_ERR_SUP, "User can not owerwrite PCTELESCOPE on bottom level, use reduction factor = 1 instead.");
+ PetscCheck(match, comm, PETSC_ERR_SUP, "User can not overwrite PCTELESCOPE on bottom level, use reduction factor = 1 instead.");
/* Reduction factor choice */
red = def->reductionfact;
if (red < 0) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/fieldsplit/fieldsplit.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/fieldsplit/fieldsplit.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/fieldsplit/fieldsplit.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/fieldsplit/fieldsplit.c 2023-02-27 23:11:05.000000000 +0100
@@ -2293,7 +2293,7 @@
+ a11 - the preconditioner for the Schur complement is generated from the block diagonal part of the preconditioner
matrix associated with the Schur complement (i.e. A11), not the Schur complement matrix
. self - the preconditioner for the Schur complement is generated from the symbolic representation of the Schur complement matrix:
- The only preconditioner that currently works with this symbolic respresentation matrix object is the `PCLSC`
+ The only preconditioner that currently works with this symbolic representation matrix object is the `PCLSC`
preconditioner
. user - the preconditioner for the Schur complement is generated from the user provided matrix (pre argument
to this function).
@@ -2703,8 +2703,8 @@
Level: intermediate
Notes:
- This shift is in general done to obtain better convergence properties for the outer loop of the algorithm. This is often achieved by chosing nu sufficiently big. However,
- if nu is chosen too big, the matrix H might be badly conditioned and the solution of the linear system Hx = b in the inner loop gets difficult. It is therefore
+ This shift is in general done to obtain better convergence properties for the outer loop of the algorithm. This is often achieved by choosing nu sufficiently big. However,
+ if nu is chosen too big, the matrix H might be badly conditioned and the solution of the linear system Hx = b in the inner loop becomes difficult. It is therefore
necessary to find a good balance in between the convergence of the inner and outer loop.
For nu = 0, no shift is done. In this case A00 has to be positive definite. The matrix N in [Ar13] is then chosen as identity.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/gamg/gamg.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/gamg/gamg.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/gamg/gamg.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/gamg/gamg.c 2023-02-27 23:11:05.000000000 +0100
@@ -131,7 +131,7 @@
#endif
PetscCall(MatGetSize(Cmat, &ncrs_eq_glob, NULL));
new_size = (PetscMPIInt)((float)ncrs_eq_glob / (float)pc_gamg->min_eq_proc + 0.5); /* hardwire min. number of eq/proc */
- if (!new_size) new_size = 1; /* not likely, posible? */
+ if (!new_size) new_size = 1; /* not likely, possible? */
else if (new_size >= nactive) new_size = nactive; /* no change, rare */
PetscCall(PetscInfo(pc, "%s: Coarse grid reduction from %d to %d active processes\n", ((PetscObject)pc)->prefix, nactive, new_size));
}
@@ -1454,7 +1454,7 @@
PetscCall((*pc_gamg->ops->destroy)(pc));
PetscCall(PetscMemzero(pc_gamg->ops, sizeof(struct _PCGAMGOps)));
pc_gamg->ops->createlevel = PCGAMGCreateLevel_GAMG;
- /* cleaning up common data in pc_gamg - this should disapear someday */
+ /* cleaning up common data in pc_gamg - this should disappear someday */
pc_gamg->data_cell_cols = 0;
pc_gamg->data_cell_rows = 0;
pc_gamg->orig_data_cell_cols = 0;
@@ -1554,9 +1554,9 @@
Options Database Keys:
+ -pc_gamg_type <type,default=agg> - one of agg, geo, or classical
-. -pc_gamg_repartition <bool,default=false> - repartition the degrees of freedom accross the coarse grids as they are determined
+. -pc_gamg_repartition <bool,default=false> - repartition the degrees of freedom across the coarse grids as they are determined
. -pc_gamg_asm_use_agg <bool,default=false> - use the aggregates from the coasening process to defined the subdomains on each level for the PCASM smoother
-. -pc_gamg_process_eq_limit <limit, default=50> - `PCGAMG` will reduce the number of MPI processes used directly on the coarse grids so that there are around <limit>
+. -pc_gamg_process_eq_limit <limit, default=50> - `PCGAMG` will reduce the number of MPI ranks used directly on the coarse grids so that there are around <limit>
equations on each process that has degrees of freedom
. -pc_gamg_coarse_eq_limit <limit, default=50> - Set maximum number of equations on coarsest grid to aim for.
. -pc_gamg_reuse_interpolation <bool,default=true> - when rebuilding the algebraic multigrid preconditioner reuse the previously computed interpolations (should always be true)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/gasm/gasm.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/gasm/gasm.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/gasm/gasm.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/gasm/gasm.c 2023-02-27 23:11:05.000000000 +0100
@@ -1628,7 +1628,7 @@
ystart = 0;
for (j = 0; j < Ndomains; ++j) {
maxheight = N / Ndomains + ((N % Ndomains) > j); /* Maximal height of subdomain */
- PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical directon for mesh height %" PetscInt_FMT, Ndomains, N);
+ PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical direction for mesh height %" PetscInt_FMT, Ndomains, N);
/* Vertical domain limits with an overlap. */
ylow = PetscMax(ystart - overlap, 0);
yhigh = PetscMin(ystart + maxheight + overlap, N);
@@ -1657,7 +1657,7 @@
ystart = 0;
for (j = 0; j < Ndomains; ++j) {
maxheight = N / Ndomains + ((N % Ndomains) > j); /* Maximal height of subdomain */
- PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical directon for mesh height %" PetscInt_FMT, Ndomains, N);
+ PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical direction for mesh height %" PetscInt_FMT, Ndomains, N);
/* Vertical domain limits with an overlap. */
y[0][0] = PetscMax(ystart - overlap, 0);
y[0][1] = PetscMin(ystart + maxheight + overlap, N);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/is/pcis.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/is/pcis.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/is/pcis.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/is/pcis.c 2023-02-27 23:11:05.000000000 +0100
@@ -159,7 +159,7 @@
for (i = 0; i < pcis->n_neigh; i++)
for (j = 0; j < pcis->n_shared[i]; j++) PetscCall(PetscBTSet(bt, pcis->shared[i][j]));
- /* Creating local and global index sets for interior and inteface nodes. */
+ /* Creating local and global index sets for interior and interface nodes. */
PetscCall(PetscMalloc1(pcis->n, &idx_I_local));
PetscCall(PetscMalloc1(pcis->n, &idx_B_local));
for (i = 0, pcis->n_B = 0, n_I = 0; i < pcis->n; i++) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/ksp/pcksp.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/ksp/pcksp.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/ksp/pcksp.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/ksp/pcksp.c 2023-02-27 23:11:05.000000000 +0100
@@ -247,7 +247,7 @@
Developer Note:
If the outer Krylov method has a nonzero initial guess it will compute a new residual based on that initial guess
and pass that as the right hand side into this `KSP` (and hence this `KSP` will always have a zero initial guess). For all outer Krylov methods
- except Richardson this is neccessary since Krylov methods, even the flexible ones, need to "see" the result of the action of the preconditioner on the
+ except Richardson this is necessary since Krylov methods, even the flexible ones, need to "see" the result of the action of the preconditioner on the
input (current residual) vector, the action of the preconditioner cannot depend also on some other vector (the "initial guess"). For
`KSPRICHARDSON` it is possible to provide a `PCApplyRichardson_PCKSP()` that short circuits returning to the `KSP` object at each iteration to compute the
residual, see for example `PCApplyRichardson_SOR()`. We do not implement a `PCApplyRichardson_PCKSP()` because (1) using a `KSP` directly inside a Richardson
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/ml/ml.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/ml/ml.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/ml/ml.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/ml/ml.c 2023-02-27 23:11:05.000000000 +0100
@@ -1012,7 +1012,7 @@
}
/* energy minimization sometimes breaks if this is turned off, the more classical stuff should be okay without it */
if (pc_ml->EnergyMinimization) pc_ml->KeepAggInfo = PETSC_TRUE;
- PetscCall(PetscOptionsBool("-pc_ml_KeepAggInfo", "Allows the preconditioner to be reused, or auxilliary matrices to be generated", "None", pc_ml->KeepAggInfo, &pc_ml->KeepAggInfo, NULL));
+ PetscCall(PetscOptionsBool("-pc_ml_KeepAggInfo", "Allows the preconditioner to be reused, or auxiliary matrices to be generated", "None", pc_ml->KeepAggInfo, &pc_ml->KeepAggInfo, NULL));
/* Option (-1) doesn't work at all (calls exit(1)) if the tentative restriction operator isn't stored. */
if (pc_ml->EnergyMinimization == -1) pc_ml->Reusable = PETSC_TRUE;
PetscCall(PetscOptionsBool("-pc_ml_Reusable", "Store intermedaiate data structures so that the multilevel hierarchy is reusable", "None", pc_ml->Reusable, &pc_ml->Reusable, NULL));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/mpi/pcmpi.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/mpi/pcmpi.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/mpi/pcmpi.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/mpi/pcmpi.c 2023-02-27 23:11:05.000000000 +0100
@@ -311,7 +311,7 @@
if (!ksp) PetscFunctionReturn(0);
PetscCall(PetscObjectGetComm((PetscObject)ksp, &comm));
- /* TODO: optimize code to not require building counts/displ everytime */
+ /* TODO: optimize code to not require building counts/displ every time */
/* scatterv rhs */
PetscCallMPI(MPI_Comm_size(comm, &size));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/pbjacobi/pbjacobi.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/pbjacobi/pbjacobi.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/pbjacobi/pbjacobi.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/pbjacobi/pbjacobi.c 2023-02-27 23:11:05.000000000 +0100
@@ -336,7 +336,7 @@
Developer Notes:
This should support the `PCSetErrorIfFailure()` flag set to `PETSC_TRUE` to allow
the factorization to continue even after a zero pivot is found resulting in a Nan and hence
- terminating `KSP` with a `KSP_DIVERGED_NANORIF` allowing
+ terminating `KSP` with a `KSP_DIVERGED_NANORINF` allowing
a nonlinear solver/ODE integrator to recover without stopping the program as currently happens.
Perhaps should provide an option that allows generation of a valid preconditioner
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/redistribute/redistribute.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/redistribute/redistribute.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/redistribute/redistribute.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/redistribute/redistribute.c 2023-02-27 23:11:05.000000000 +0100
@@ -338,21 +338,22 @@
PCREDISTRIBUTE - Redistributes a matrix for load balancing, removing the rows (and the corresponding columns) that only have a diagonal entry and then
applies a `KSP` to that new smaller matrix
+ Level: intermediate
+
Notes:
Options for the redistribute `KSP` and `PC` with the options database prefix -redistribute_
- Usually run this with -ksp_type preonly
+ Usually run this with `-ksp_type preonly`
- If you have used `MatZeroRows()` to eliminate (for example, Dirichlet) boundary conditions for a symmetric problem then you can use, for example, -ksp_type preonly
- -pc_type redistribute -redistribute_ksp_type cg -redistribute_pc_type bjacobi -redistribute_sub_pc_type icc to take advantage of the symmetry.
+ If you have used `MatZeroRows()` to eliminate (for example, Dirichlet) boundary conditions for a symmetric problem then you can use, for example, `-ksp_type preonly
+ -pc_type redistribute -redistribute_ksp_type cg -redistribute_pc_type bjacobi -redistribute_sub_pc_type icc` to take advantage of the symmetry.
- This does NOT call a partitioner to reorder rows to lower communication; the ordering of the rows in the original matrix and redistributed matrix is the same.
+ This does NOT call a partitioner to reorder rows to lower communication; the ordering of the rows in the original matrix and redistributed matrix is the same. Rows are moved
+ between MPI processes inside the preconditioner to balance the number of rows on each process.
Developer Note:
Should add an option to this preconditioner to use a partitioner to redistribute the rows to lower communication.
- Level: intermediate
-
.seealso: `PCCreate()`, `PCSetType()`, `PCType`, `PCRedistributeGetKSP()`, `MatZeroRows()`
M*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/sor/sor.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/sor/sor.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/sor/sor.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/sor/sor.c 2023-02-27 23:11:05.000000000 +0100
@@ -405,7 +405,7 @@
Jacobi with SOR on each block.
For `MATAIJ` matrices if a diagonal entry is zero (and the diagonal shift is zero) then by default the inverse of that
- zero will be used and hence the `KSPSolve()` will terminate with `KSP_DIVERGED_NANORIF`. If the option
+ zero will be used and hence the `KSPSolve()` will terminate with `KSP_DIVERGED_NANORINF`. If the option
`KSPSetErrorIfNotConverged()` or -ksp_error_if_not_converged the code will terminate as soon as it detects the
zero pivot.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/telescope/telescope.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/telescope/telescope.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/telescope/telescope.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/telescope/telescope.c 2023-02-27 23:11:05.000000000 +0100
@@ -1240,7 +1240,7 @@
`PCTELESCOPE` will interpret the coarse `DM` as being defined on a sub-communicator of c.
The communicator associated with dmcoarse will define the c' to be used within `PCTELESCOPE`.
`PCTELESCOPE` will check that c' is in fact a sub-communicator of c. If it is not, an error will be reported.
- The intention of this setup type is that` PCTELESCOPE` will use an existing (e.g. user defined) communicator hierarchy, say as would be
+ The intention of this setup type is that `PCTELESCOPE` will use an existing (e.g. user defined) communicator hierarchy, say as would be
available with using multi-grid on unstructured meshes.
This setup will not use the command line options -pc_telescope_reduction_factor or -pc_telescope_subcomm_type.
Any explicitly defined nullspace or near nullspace vectors attached to the original Bmat operator (B) are extracted, scattered into the correct ordering consistent with dmcoarse and set on B'.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c petsc-3.18.5+dfsg1/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c 2023-02-27 23:11:05.000000000 +0100
@@ -185,7 +185,7 @@
Developer Notes:
This should support the `PCSetErrorIfFailure()` flag set to `PETSC_TRUE` to allow
the factorization to continue even after a zero pivot is found resulting in a Nan and hence
- terminating `KSP` with a `KSP_DIVERGED_NANORIF` allowing
+ terminating `KSP` with a `KSP_DIVERGED_NANORINF` allowing
a nonlinear solver/ODE integrator to recover without stopping the program as currently happens.
Perhaps should provide an option that allows generation of a valid preconditioner
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/interface/precon.c petsc-3.18.5+dfsg1/src/ksp/pc/interface/precon.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/interface/precon.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ksp/pc/interface/precon.c 2023-02-27 23:11:05.000000000 +0100
@@ -1285,7 +1285,7 @@
.ve
The rationale for this support is so that when creating a `TS`, `SNES`, or `KSP` the hierarchy
- of underlying objects (i.e. `SNES`, `KSP`, `PC`, `Mat`) and their livespans can be completely
+ of underlying objects (i.e. `SNES`, `KSP`, `PC`, `Mat`) and their lifespans can be completely
managed by the top most level object (i.e. the `TS`, `SNES`, or `KSP`). Another way to look
at this is when you create a `SNES` you do not NEED to create a `KSP` and attach it to
the `SNES` object (the `SNES` object manages it for you). Similarly when you create a KSP
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ksp/pc/tests/ex6.c petsc-3.18.5+dfsg1/src/ksp/pc/tests/ex6.c
--- petsc-3.18.4+dfsg1/src/ksp/pc/tests/ex6.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ksp/pc/tests/ex6.c 2023-02-27 23:11:05.000000000 +0100
@@ -75,7 +75,7 @@
PetscCall(PCASMCreateSubdomains2D(m + 1, m + 1, x1, x2, 1, ol, &Nsub2, &is2, &islocal2));
PetscCall(PetscPrintf(PETSC_COMM_SELF, "flg == 1 => both index sets are same\n"));
- if (Nsub1 != Nsub2) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: No of indes sets don't match\n"));
+ if (Nsub1 != Nsub2) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Error: No of index sets don't match\n"));
for (i = 0; i < Nsub1; ++i) {
PetscCall(ISEqual(is1[i], is2[i], &flg));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/coarsen/impls/hem/hem.c petsc-3.18.5+dfsg1/src/mat/coarsen/impls/hem/hem.c
--- petsc-3.18.4+dfsg1/src/mat/coarsen/impls/hem/hem.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/coarsen/impls/hem/hem.c 2023-02-27 23:11:05.000000000 +0100
@@ -12,7 +12,7 @@
PetscCoarsenData *ail;
PetscFunctionBegin;
- /* alocate pool, partially */
+ /* allocate pool, partially */
PetscCall(PetscNew(&ail));
*a_out = ail;
ail->pool_list.next = NULL;
@@ -771,7 +771,7 @@
}
/* receive requests, send response, clear lists */
kk = nactive_edges;
- PetscCall(MPIU_Allreduce(&kk, &nactive_edges, 1, MPIU_INT, MPI_SUM, comm)); /* not correct syncronization and global */
+ PetscCall(MPIU_Allreduce(&kk, &nactive_edges, 1, MPIU_INT, MPI_SUM, comm)); /* not correct synchronization and global */
nSend2 = 0;
while (1) {
#define BF_SZ 10000
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/coarsen/impls/mis/mis.c petsc-3.18.5+dfsg1/src/mat/coarsen/impls/mis/mis.c
--- petsc-3.18.4+dfsg1/src/mat/coarsen/impls/mis/mis.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/coarsen/impls/mis/mis.c 2023-02-27 23:11:05.000000000 +0100
@@ -93,7 +93,7 @@
/* MIS */
nremoved = nDone = 0;
PetscCall(ISGetIndices(perm, &perm_ix));
- while (nDone < nloc || PETSC_TRUE) { /* asyncronous not implemented */
+ while (nDone < nloc || PETSC_TRUE) { /* asynchronous not implemented */
/* check all vertices */
for (kk = 0; kk < nloc; kk++) {
lid = perm_ix[kk];
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/f90-mod/ftn-auto-interfaces/petscmat.h90 petsc-3.18.5+dfsg1/src/mat/f90-mod/ftn-auto-interfaces/petscmat.h90
--- petsc-3.18.4+dfsg1/src/mat/f90-mod/ftn-auto-interfaces/petscmat.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/f90-mod/ftn-auto-interfaces/petscmat.h90 2023-02-27 23:28:35.000000000 +0100
@@ -69,7 +69,7 @@
PetscErrorCode z
end subroutine MatMPIAIJGetLocalMat
subroutine MatMPIAIJGetLocalMatMerge(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
MatReuse b ! MatReuse
IS c ! IS
@@ -632,7 +632,7 @@
PetscErrorCode z
end subroutine MatKAIJSetAIJ
subroutine MatCreateLocalRef(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -760,7 +760,7 @@
PetscErrorCode z
end subroutine MatNestGetSize
subroutine MatNestSetSubMats(a,b,c,d,e,f,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
PetscInt b ! PetscInt
IS c (*) ! IS
@@ -876,7 +876,7 @@
PetscErrorCode z
end subroutine MatIsShell
subroutine MatCreateSubMatrixVirtual(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -884,7 +884,7 @@
PetscErrorCode z
end subroutine MatCreateSubMatrixVirtual
subroutine MatSubMatrixVirtualUpdate(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
Mat b ! Mat
IS c ! IS
@@ -916,7 +916,7 @@
PetscErrorCode z
end subroutine MatCreateTranspose
subroutine MatNullSpaceCreateRigidBody(a,b,z)
- import tMatNullSpace,tVec
+ import tVec,tMatNullSpace
Vec a ! Vec
MatNullSpace b ! MatNullSpace
PetscErrorCode z
@@ -927,7 +927,7 @@
PetscErrorCode z
end subroutine MatNullSpaceDestroy
subroutine MatNullSpaceTest(a,b,c,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
MatNullSpace a ! MatNullSpace
Mat b ! Mat
PetscBool c ! PetscBool
@@ -997,7 +997,7 @@
PetscErrorCode z
end subroutine MatProductGetMats
subroutine MatSetRandom(a,b,z)
- import tMat,tPetscRandom
+ import tPetscRandom,tMat
Mat a ! Mat
PetscRandom b ! PetscRandom
PetscErrorCode z
@@ -1021,13 +1021,13 @@
PetscErrorCode z
end subroutine MatFactorClearError
subroutine MatFindNonzeroRows(a,b,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
PetscErrorCode z
end subroutine MatFindNonzeroRows
subroutine MatFindZeroRows(a,b,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
PetscErrorCode z
@@ -1221,14 +1221,14 @@
PetscErrorCode z
end subroutine MatMultHermitianTransposeAdd
subroutine MatQRFactor(a,b,c,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
MatFactorInfo c ! MatFactorInfo
PetscErrorCode z
end subroutine MatQRFactor
subroutine MatQRFactorSymbolic(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
Mat b ! Mat
IS c ! IS
@@ -1388,7 +1388,7 @@
PetscErrorCode z
end subroutine MatIsHermitianTranspose
subroutine MatPermute(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -1470,7 +1470,7 @@
PetscErrorCode z
end subroutine MatZeroRowsColumns
subroutine MatZeroRowsColumnsIS(a,b,c,d,e,z)
- import tIS,tMat,tVec
+ import tVec,tMat,tIS
Mat a ! Mat
IS b ! IS
PetscScalar c ! PetscScalar
@@ -1489,7 +1489,7 @@
PetscErrorCode z
end subroutine MatZeroRows
subroutine MatZeroRowsIS(a,b,c,d,e,z)
- import tIS,tMat,tVec
+ import tVec,tMat,tIS
Mat a ! Mat
IS b ! IS
PetscScalar c ! PetscScalar
@@ -1518,7 +1518,7 @@
PetscErrorCode z
end subroutine MatZeroRowsColumnsStencil
subroutine MatZeroRowsLocalIS(a,b,c,d,e,z)
- import tIS,tMat,tVec
+ import tVec,tMat,tIS
Mat a ! Mat
IS b ! IS
PetscScalar c ! PetscScalar
@@ -1537,7 +1537,7 @@
PetscErrorCode z
end subroutine MatZeroRowsColumnsLocal
subroutine MatZeroRowsColumnsLocalIS(a,b,c,d,e,z)
- import tIS,tMat,tVec
+ import tVec,tMat,tIS
Mat a ! Mat
IS b ! IS
PetscScalar c ! PetscScalar
@@ -1546,7 +1546,7 @@
PetscErrorCode z
end subroutine MatZeroRowsColumnsLocalIS
subroutine MatIncreaseOverlap(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
PetscInt b ! PetscInt
IS c (*) ! IS
@@ -1554,7 +1554,7 @@
PetscErrorCode z
end subroutine MatIncreaseOverlap
subroutine MatIncreaseOverlapSplit(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
PetscInt b ! PetscInt
IS c (*) ! IS
@@ -1622,7 +1622,7 @@
PetscErrorCode z
end subroutine MatSetUnfactored
subroutine MatCreateSubMatrix(a,b,c,d,e,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -1688,37 +1688,37 @@
PetscErrorCode z
end subroutine MatMatRestrict
subroutine MatGetNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
end subroutine MatGetNullSpace
subroutine MatSetNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
end subroutine MatSetNullSpace
subroutine MatGetTransposeNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
end subroutine MatGetTransposeNullSpace
subroutine MatSetTransposeNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
end subroutine MatSetTransposeNullSpace
subroutine MatSetNearNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
end subroutine MatSetNearNullSpace
subroutine MatGetNearNullSpace(a,b,z)
- import tMatNullSpace,tMat
+ import tMat,tMatNullSpace
Mat a ! Mat
MatNullSpace b ! MatNullSpace
PetscErrorCode z
@@ -1795,7 +1795,7 @@
PetscErrorCode z
end subroutine MatStashGetInfo
subroutine MatFactorSetSchurIS(a,b,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
PetscErrorCode z
@@ -1910,7 +1910,7 @@
PetscErrorCode z
end subroutine MatCreateRedundantMatrix
subroutine MatGetLocalSubMatrix(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -1918,7 +1918,7 @@
PetscErrorCode z
end subroutine MatGetLocalSubMatrix
subroutine MatRestoreLocalSubMatrix(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
IS c ! IS
@@ -1926,13 +1926,13 @@
PetscErrorCode z
end subroutine MatRestoreLocalSubMatrix
subroutine MatFindZeroDiagonals(a,b,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
PetscErrorCode z
end subroutine MatFindZeroDiagonals
subroutine MatFindOffBlockDiagonalEntries(a,b,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
IS b ! IS
PetscErrorCode z
@@ -1959,7 +1959,7 @@
PetscErrorCode z
end subroutine MatCreateMPIMatConcatenateSeqMat
subroutine MatSubdomainsCreateCoalesce(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
PetscInt b ! PetscInt
PetscInt c ! PetscInt
@@ -2004,7 +2004,7 @@
PetscErrorCode z
end subroutine MatFDColoringSetBlockSize
subroutine MatFDColoringSetUp(a,b,c,z)
- import tISColoring,tMat,tMatFDColoring
+ import tMat,tISColoring,tMatFDColoring
Mat a ! Mat
ISColoring b ! ISColoring
MatFDColoring c ! MatFDColoring
@@ -2016,7 +2016,7 @@
PetscErrorCode z
end subroutine MatFDColoringSetFromOptions
subroutine MatFDColoringCreate(a,b,c,z)
- import tISColoring,tMat,tMatFDColoring
+ import tMat,tISColoring,tMatFDColoring
Mat a ! Mat
ISColoring b ! ISColoring
MatFDColoring c ! MatFDColoring
@@ -2298,7 +2298,7 @@
PetscErrorCode z
end subroutine MatIsLinear
subroutine MatReorderForNonzeroDiagonal(a,b,c,d,z)
- import tIS,tMat
+ import tMat,tIS
Mat a ! Mat
PetscReal b ! PetscReal
IS c ! IS
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -480,7 +480,7 @@
unrelated places in Ca, so dstrowoffset is not in CSR-like format as srcrowoffset.
- C - the matrix made up by rows sent to me from other ranks, using global col ids
- TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide oppertunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX.
+ TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide opportunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX.
*/
static PetscErrorCode MatSeqAIJKokkosReduce(Mat A, MatReuse reuse, PetscBool local, PetscInt N, const ConstMatColIdxKokkosView &l2g, PetscSF ownerSF, PetscSF &reduceSF, MatScalarKokkosView &abuf, MatRowMapKokkosView &srcrowoffset, MatRowMapKokkosView &dstrowoffset, KokkosCsrMatrix &C)
{
@@ -917,7 +917,7 @@
/* C2 = Ao * B_other. B_other is a matrix consisting of needed rows of B gathered from other procs */
PetscCall(MatSeqAIJKokkosBcast(mm->B_local, MAT_INITIAL_MATRIX, N, l2g1, a->Mvctx, mm->sf, mm->abuf, mm->rows, mm->rowoffset, mm->B_other));
- /* Compact B_other to use local ids as we guess KK spgemm is more memroy scalable with that; We could skip the compaction to simplify code */
+ /* Compact B_other to use local ids as we guess KK spgemm is more memory scalable with that; We could skip the compaction to simplify code */
PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(mm->B_other, l2g2));
PetscCall(MatProductCreate(Ao, mm->B_other, NULL, &C2));
PetscCall(MatProductSetType(C2, MATPRODUCT_AB));
@@ -1568,7 +1568,7 @@
h_mat.diag.i = aijkokA->i_device_data();
h_mat.diag.j = aijkokA->j_device_data();
h_mat.diag.a = aijkokA->a_device_data();
- // copy pointers and metdata to device
+ // copy pointers and metadata to device
PetscCall(MatSeqAIJKokkosSetDeviceMat(Amat, &h_mat));
PetscCall(MatSeqAIJKokkosGetDeviceMat(Amat, &d_mat));
PetscCall(PetscInfo(A, "Create device Mat n=%" PetscInt_FMT " nnz=%" PetscInt_FMT "\n", h_mat.diag.n, nnz));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c 2023-02-27 23:11:05.000000000 +0100
@@ -584,7 +584,7 @@
mat_mkl_cpardiso->iparm[27] = 0;
#endif
- mat_mkl_cpardiso->iparm[0] = 1; /* Solver default parameters overriden with provided by iparm */
+ mat_mkl_cpardiso->iparm[0] = 1; /* Solver default parameters overridden with provided by iparm */
mat_mkl_cpardiso->iparm[1] = 2; /* Use METIS for fill-in reordering */
mat_mkl_cpardiso->iparm[5] = 0; /* Write solution into x */
mat_mkl_cpardiso->iparm[7] = 2; /* Max number of iterative refinement steps */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mpiaij.c petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mpiaij.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mpiaij.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mpiaij.c 2023-02-27 23:11:05.000000000 +0100
@@ -6397,7 +6397,7 @@
}
}
- /* Sort by row; after that, [0,k) have ignored entires, [k,rem) have local rows and [rem,n1) have remote rows */
+ /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
for (k = 0; k < n1; k++) {
if (i1[k] > PETSC_MIN_INT) break;
@@ -6686,7 +6686,7 @@
PetscCall(PetscSFReduceWithMemTypeBegin(mpiaij->coo_sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
/* Add local entries to A and B */
for (PetscCount i = 0; i < Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
- PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stablility */
+ PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */
for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
}
@@ -7367,7 +7367,7 @@
so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
- Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaing part stores i of nonzeros I will receive.
+ Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
*/
PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mpiov.c petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mpiov.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mpiov.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mpiov.c 2023-02-27 23:11:05.000000000 +0100
@@ -148,7 +148,7 @@
PetscFunctionReturn(0);
}
nto = 0;
- /* send sizes and ranks for building a two-sided communcation */
+ /* send sizes and ranks for building a two-sided communication */
for (i = 0; i < size; i++) {
if (tosizes_temp[i]) {
tosizes[nto * 2] = tosizes_temp[i] * 2; /* size */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mumps/mumps.c petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mumps/mumps.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/mpi/mumps/mumps.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/mpi/mumps/mumps.c 2023-02-27 23:11:05.000000000 +0100
@@ -183,7 +183,7 @@
/* stuff used by petsc/mumps OpenMP support*/
PetscBool use_petsc_omp_support;
- PetscOmpCtrl omp_ctrl; /* an OpenMP controler that blocked processes will release their CPU (MPI_Barrier does not have this guarantee) */
+ PetscOmpCtrl omp_ctrl; /* an OpenMP controller that blocked processes will release their CPU (MPI_Barrier does not have this guarantee) */
MPI_Comm petsc_comm, omp_comm; /* petsc_comm is petsc matrix's comm */
PetscInt64 *recvcount; /* a collection of nnz on omp_master */
PetscMPIInt tag, omp_comm_size;
@@ -1267,7 +1267,7 @@
} else { /* sparse B */
PetscCheck(X != B, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_IDN, "X and B must be different matrices");
PetscCall(PetscObjectTypeCompare((PetscObject)B, MATTRANSPOSEVIRTUAL, &flgT));
- if (flgT) { /* input B is transpose of actural RHS matrix,
+ if (flgT) { /* input B is transpose of actual RHS matrix,
because mumps requires sparse compressed COLUMN storage! See MatMatTransposeSolve_MUMPS() */
PetscCall(MatTransposeGetMat(B, &Bt));
} else SETERRQ(PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONG, "Matrix B must be MATTRANSPOSEVIRTUAL matrix");
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aij.c petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aij.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aij.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aij.c 2023-02-27 23:11:05.000000000 +0100
@@ -2476,7 +2476,7 @@
const PetscScalar *aa;
PetscInt nrows, ncols;
PetscInt *starts, *j_new, *i_new, *aj = a->j, *ai = a->i, ii, *ailen = a->ilen;
- MatScalar *a_new, *mat_a;
+ MatScalar *a_new, *mat_a, *c_a;
Mat C;
PetscBool stride;
@@ -2533,7 +2533,7 @@
c = (Mat_SeqAIJ *)C->data;
/* loop over rows inserting into submatrix */
- a_new = c->a;
+ PetscCall(MatSeqAIJGetArrayWrite(C, &a_new)); // Not 'a_new = c->a-new', since that raw usage ignores offload state of C
j_new = c->j;
i_new = c->i;
PetscCall(MatSeqAIJGetArrayRead(A, &aa));
@@ -2546,6 +2546,7 @@
i_new[i + 1] = i_new[i] + lensi;
c->ilen[i] = lensi;
}
+ PetscCall(MatSeqAIJRestoreArrayWrite(C, &a_new)); // Set C's offload state properly
PetscCall(MatSeqAIJRestoreArrayRead(A, &aa));
PetscCall(PetscFree2(lens, starts));
} else {
@@ -2587,14 +2588,16 @@
PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(C, 0, lens));
}
PetscCall(MatSeqAIJGetArrayRead(A, &aa));
+
c = (Mat_SeqAIJ *)(C->data);
+ PetscCall(MatSeqAIJGetArrayWrite(C, &c_a)); // Not 'c->a', since that raw usage ignores offload state of C
for (i = 0; i < nrows; i++) {
row = irow[i];
kstart = ai[row];
kend = kstart + a->ilen[row];
mat_i = c->i[i];
mat_j = c->j + mat_i;
- mat_a = c->a + mat_i;
+ mat_a = c_a + mat_i;
mat_ilen = c->ilen + i;
for (k = kstart; k < kend; k++) {
if ((tcol = smap[a->j[k]])) {
@@ -2615,10 +2618,11 @@
mat_i = c->i[i];
mat_j = c->j + mat_i;
- mat_a = c->a + mat_i;
+ mat_a = c_a + mat_i;
ilen = c->ilen[i];
PetscCall(PetscSortIntWithScalarArray(ilen, mat_j, mat_a));
}
+ PetscCall(MatSeqAIJRestoreArrayWrite(C, &c_a));
}
#if defined(PETSC_HAVE_DEVICE)
PetscCall(MatBindToCPU(C, A->boundtocpu));
@@ -3766,7 +3770,7 @@
$ endloop
Notes:
- Matrix must already be assemblied before calling this routine
+ Matrix must already be assembled before calling this routine
Must set the matrix option `MatSetOption`(mat,`MAT_NEW_NONZERO_LOCATIONS`,`PETSC_FALSE`); before
calling this routine.
@@ -5306,7 +5310,7 @@
- matype - matrix type
Options Database Key:
-. -mat_seqai_type <method> - for example seqaijcrl
+. -mat_seqaij_type <method> - for example seqaijcrl
Level: intermediate
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aijfact.c petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aijfact.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aijfact.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aijfact.c 2023-02-27 23:11:05.000000000 +0100
@@ -3412,7 +3412,7 @@
PetscFunctionReturn(0);
}
-/* a wraper of MatILUDTFactor_SeqAIJ() */
+/* a wrapper of MatILUDTFactor_SeqAIJ() */
/*
This will get a new name and become a variant of MatILUFactor_SeqAIJ() there is no longer separate functions in the matrix function table for dt factors
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aij.h petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aij.h
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/aij.h 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/aij.h 2023-02-27 23:11:05.000000000 +0100
@@ -554,7 +554,6 @@
{
__m512d vec_x, vec_y, vec_vals;
__m256i vec_idx;
- __mmask8 mask;
PetscInt j;
vec_y = _mm512_setzero_pd();
@@ -569,6 +568,7 @@
#if defined(__AVX512VL__)
/* masked load requires avx512vl, which is not supported by KNL */
if (n & 0x07) {
+ __mmask8 mask;
mask = (__mmask8)(0xff >> (8 - (n & 0x07)));
vec_idx = _mm256_mask_loadu_epi32(vec_idx, mask, aj);
vec_vals = _mm512_mask_loadu_pd(vec_vals, mask, aa);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/bas/spbas.h petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/bas/spbas.h
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/bas/spbas.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/bas/spbas.h 2023-02-27 23:11:05.000000000 +0100
@@ -19,7 +19,7 @@
Information about each row
row_nnz : number of nonzeros for each row
icol0 : column index offset (when needed, otherwise NULL)
- icols : array of diagonal offsets for each row, as descibed
+ icols : array of diagonal offsets for each row, as described
for col_idx_type, above
values : array of matrix entries for each row
when values == NULL, this matrix is really
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/essl/essl.c petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/essl/essl.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/essl/essl.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/essl/essl.c 2023-02-27 23:11:05.000000000 +0100
@@ -58,7 +58,7 @@
PetscFunctionBegin;
PetscCall(PetscBLASIntCast(A->rmap->n, &nessl));
- /* copy matrix data into silly ESSL data structure (1-based Frotran style) */
+ /* copy matrix data into silly ESSL data structure (1-based Fortran style) */
for (i = 0; i < A->rmap->n + 1; i++) essl->ia[i] = aa->i[i] + 1;
for (i = 0; i < aa->nz; i++) essl->ja[i] = aa->j[i] + 1;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -1384,7 +1384,7 @@
Kokkos::View<size_t, Kokkos::HostSpace> h_flops_k(&flops_h);
Kokkos::View<size_t> d_flops_k("flops");
const int conc = Kokkos::DefaultExecutionSpace().concurrency(), team_size = conc > 1 ? 16 : 1; // 8*32 = 256
- const int nloc = n / Nf, Ni = (conc > 8) ? 1 /* some intelegent number of SMs -- but need league_barrier */ : 1;
+ const int nloc = n / Nf, Ni = (conc > 8) ? 1 /* some intelligent number of SMs -- but need league_barrier */ : 1;
Kokkos::deep_copy(d_flops_k, h_flops_k);
Kokkos::deep_copy(d_r_k, h_r_k);
Kokkos::deep_copy(d_ic_k, h_ic_k);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c 2023-02-27 23:11:05.000000000 +0100
@@ -665,7 +665,7 @@
mat_mkl_pardiso->iparm[27] = 0;
#endif
/* Default options for both sym and unsym */
- mat_mkl_pardiso->iparm[0] = 1; /* Solver default parameters overriden with provided by iparm */
+ mat_mkl_pardiso->iparm[0] = 1; /* Solver default parameters overridden with provided by iparm */
mat_mkl_pardiso->iparm[1] = 2; /* Metis reordering */
mat_mkl_pardiso->iparm[5] = 0; /* Write solution into x */
mat_mkl_pardiso->iparm[7] = 0; /* Max number of iterative refinement steps */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu 2023-02-27 23:11:05.000000000 +0100
@@ -3363,7 +3363,7 @@
/* ScatterAdd the result from work vector into the full vector when A is compressed */
if (compressed) {
PetscCall(PetscLogGpuTimeBegin());
- /* I wanted to make this for_each asynchronous but failed. thrust::async::for_each() returns an event (internally registerred)
+ /* I wanted to make this for_each asynchronous but failed. thrust::async::for_each() returns an event (internally registered)
and in the destructor of the scope, it will call cudaStreamSynchronize() on this stream. One has to store all events to
prevent that. So I just add a ScatterAdd kernel.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp 2023-02-27 23:11:05.000000000 +0100
@@ -3152,7 +3152,7 @@
/* ScatterAdd the result from work vector into the full vector when A is compressed */
if (compressed) {
PetscCall(PetscLogGpuTimeBegin());
- /* I wanted to make this for_each asynchronous but failed. thrust::async::for_each() returns an event (internally registerred)
+ /* I wanted to make this for_each asynchronous but failed. thrust::async::for_each() returns an event (internally registered)
and in the destructor of the scope, it will call hipStreamSynchronize() on this stream. One has to store all events to
prevent that. So I just add a ScatterAdd kernel.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/superlu/superlu.c petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/superlu/superlu.c
--- petsc-3.18.4+dfsg1/src/mat/impls/aij/seq/superlu/superlu.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/aij/seq/superlu/superlu.c 2023-02-27 23:11:05.000000000 +0100
@@ -231,7 +231,7 @@
SCformat *Lstore;
PetscFunctionBegin;
- if (lu->flg == SAME_NONZERO_PATTERN) { /* successing numerical factorization */
+ if (lu->flg == SAME_NONZERO_PATTERN) { /* successive numerical factorization */
lu->options.Fact = SamePattern;
/* Ref: ~SuperLU_3.0/EXAMPLE/dlinsolx2.c */
Destroy_SuperMatrix_Store(&lu->A);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c petsc-3.18.5+dfsg1/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
--- petsc-3.18.4+dfsg1/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c 2023-02-27 23:11:05.000000000 +0100
@@ -27,19 +27,7 @@
}
/*@C
- MatCreateBAIJMKL - Creates a sparse parallel matrix in `MATBAIJMKL` format
- (block compressed row).
- This type inherits from `MATBAIJ` and is largely identical, but uses sparse BLAS
- routines from Intel MKL whenever possible.
- `MatMult()`, `MatMultAdd()`, `MatMultTranspose()`, and `MatMultTransposeAdd()`
- operations are currently supported.
- If the installed version of MKL supports the "SpMV2" sparse
- inspector-executor routines, then those are used by default.
- Default PETSc kernels are used otherwise.
- For good matrix assembly performance the user should preallocate the matrix
- storage by setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz).
- By setting these parameters accurately, performance can be increased by more
- than a factor of 50.
+ MatCreateBAIJMKL - Creates a sparse parallel matrix in `MATBAIJMKL` format (block compressed row).
Collective
@@ -79,6 +67,18 @@
[MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
Notes:
+ This type inherits from `MATBAIJ` and is largely identical, but uses sparse BLAS
+ routines from Intel MKL whenever possible.
+ `MatMult()`, `MatMultAdd()`, `MatMultTranspose()`, and `MatMultTransposeAdd()`
+ operations are currently supported.
+ If the installed version of MKL supports the "SpMV2" sparse
+ inspector-executor routines, then those are used by default.
+ Default PETSc kernels are used otherwise.
+ For good matrix assembly performance the user should preallocate the matrix
+ storage by setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
+ By setting these parameters accurately, performance can be increased by more
+ than a factor of 50.
+
If the *_nnz parameter is given then the *_nz parameter is ignored
A nonzero block is any block that as 1 or more nonzeros in it
@@ -96,10 +96,10 @@
local matrix (a rectangular submatrix).
The user can specify preallocated storage for the diagonal part of
- the local submatrix with either d_nz or d_nnz (not both). Set
- d_nz = `PETSC_DEFAULT` and d_nnz = NULL for PETSc to control dynamic
+ the local submatrix with either `d_nz` or `d_nnz` (not both). Set
+ `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
memory allocation. Likewise, specify preallocated storage for the
- off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
+ off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
the figure below we depict these three local rows and all columns (0-11).
@@ -118,10 +118,10 @@
o (off-diagonal) submatrix. Note that the d and the o submatrices are
stored simply in the `MATSEQBAIJMKL` format for compressed row storage.
- Now d_nz should indicate the number of block nonzeros per row in the d matrix,
- and o_nz should indicate the number of block nonzeros per row in the o matrix.
+ Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
+ and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
In general, for PDE problems in which most nonzeros are near the diagonal,
- one expects d_nz >> o_nz. For large problems you MUST preallocate memory
+ one expects `d_nz` >> `o_nz`. For large problems you MUST preallocate memory
or you will get TERRIBLE performance; see the users' manual chapter on
matrices.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/baij/mpi/mpibaij.c petsc-3.18.5+dfsg1/src/mat/impls/baij/mpi/mpibaij.c
--- petsc-3.18.4+dfsg1/src/mat/impls/baij/mpi/mpibaij.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/baij/mpi/mpibaij.c 2023-02-27 23:11:05.000000000 +0100
@@ -1228,7 +1228,7 @@
PetscCall(VecGetLocalSize(xx, &nt));
PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
PetscCall(VecGetLocalSize(yy, &nt));
- PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible parition of A and yy");
+ PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
PetscCall((*a->A->ops->mult)(a->A, xx, yy));
PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
@@ -2671,7 +2671,7 @@
Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
-.seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
+.seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
@*/
PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
{
@@ -2855,7 +2855,7 @@
`MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
-.seealso: MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ`
+.seealso: `Mat`, MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ`
M*/
PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
@@ -2951,33 +2951,30 @@
Level: beginner
-.seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
+.seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
M*/
/*@C
MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
- (block compressed row). For good matrix assembly performance
- the user should preallocate the matrix storage by setting the parameters
- d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately,
- performance can be increased by more than a factor of 50.
+ (block compressed row).
Collective
Input Parameters:
+ B - the matrix
. bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
- blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
+ blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
. d_nz - number of block nonzeros per block row in diagonal portion of local
submatrix (same for all local rows)
. d_nnz - array containing the number of block nonzeros in the various block rows
of the in diagonal portion of the local (possibly different for each block
- row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and
+ row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and
set it even if it is zero.
. o_nz - number of block nonzeros per block row in the off-diagonal portion of local
submatrix (same for all local rows).
- o_nnz - array containing the number of nonzeros in the various block rows of the
off-diagonal portion of the local submatrix (possibly different for
- each block row) or NULL.
+ each block row) or `NULL`.
If the *_nnz parameter is given then the *_nz parameter is ignored
@@ -2985,7 +2982,14 @@
+ -mat_block_size - size of the blocks to use
- -mat_use_hash_table <fact> - set hash table factor
+ Level: intermediate
+
Notes:
+ For good matrix assembly performance
+ the user should preallocate the matrix storage by setting the parameters
+ `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately,
+ performance can be increased by more than a factor of 50.
+
If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
than it must be used on all processors that share the object for that argument.
@@ -2996,10 +3000,10 @@
local matrix (a rectangular submatrix).
The user can specify preallocated storage for the diagonal part of
- the local submatrix with either d_nz or d_nnz (not both). Set
- d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
+ the local submatrix with either `d_nz` or `d_nnz` (not both). Set
+ `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
memory allocation. Likewise, specify preallocated storage for the
- off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
+ off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
the figure below we depict these three local rows and all columns (0-11).
@@ -3018,21 +3022,19 @@
o (off-diagonal) submatrix. Note that the d and the o submatrices are
stored simply in the `MATSEQBAIJ` format for compressed row storage.
- Now d_nz should indicate the number of block nonzeros per row in the d matrix,
- and o_nz should indicate the number of block nonzeros per row in the o matrix.
+ Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
+ and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
In general, for PDE problems in which most nonzeros are near the diagonal,
- one expects d_nz >> o_nz. For large problems you MUST preallocate memory
+ one expects `d_nz` >> `o_nz`. For large problems you MUST preallocate memory
or you will get TERRIBLE performance; see the users' manual chapter on
matrices.
You can call `MatGetInfo()` to get information on how effective the preallocation was;
for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
- You can also run with the option -info and look for messages with the string
+ You can also run with the option `-info` and look for messages with the string
malloc in them to see if additional memory allocation was needed.
- Level: intermediate
-
-.seealso: `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
+.seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
@*/
PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
{
@@ -3046,10 +3048,7 @@
/*@C
MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
- (block compressed row). For good matrix assembly performance
- the user should preallocate the matrix storage by setting the parameters
- d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately,
- performance can be increased by more than a factor of 50.
+ (block compressed row).
Collective
@@ -3084,11 +3083,18 @@
+ -mat_block_size - size of the blocks to use
- -mat_use_hash_table <fact> - set hash table factor
+ Level: intermediate
+
+ Notes:
+ For good matrix assembly performance
+ the user should preallocate the matrix storage by setting the parameters
+ `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately,
+ performance can be increased by more than a factor of 50.
+
It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
MatXXXXSetPreallocation() paradigm instead of this routine directly.
[MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
- Notes:
If the *_nnz parameter is given then the *_nz parameter is ignored
A nonzero block is any block that as 1 or more nonzeros in it
@@ -3107,9 +3113,9 @@
The user can specify preallocated storage for the diagonal part of
the local submatrix with either d_nz or d_nnz (not both). Set
- d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
+ `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
memory allocation. Likewise, specify preallocated storage for the
- off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
+ off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
the figure below we depict these three local rows and all columns (0-11).
@@ -3128,16 +3134,14 @@
o (off-diagonal) submatrix. Note that the d and the o submatrices are
stored simply in the `MATSEQBAIJ` format for compressed row storage.
- Now d_nz should indicate the number of block nonzeros per row in the d matrix,
- and o_nz should indicate the number of block nonzeros per row in the o matrix.
+ Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
+ and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
In general, for PDE problems in which most nonzeros are near the diagonal,
- one expects d_nz >> o_nz. For large problems you MUST preallocate memory
+ one expects `d_nz` >> `o_nz`. For large problems you MUST preallocate memory
or you will get TERRIBLE performance; see the users' manual chapter on
matrices.
- Level: intermediate
-
-.seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
+.seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
@*/
PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
{
@@ -3358,7 +3362,7 @@
Level: advanced
-.seealso: `MATMPIBAIJ`, `MatSetOption()`
+.seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
@*/
PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
{
@@ -3419,7 +3423,7 @@
Level: advanced
-.seealso: `MatSetValuesBlocked()`
+.seealso: `Mat`, `MatSetValuesBlocked()`
@*/
PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
{
@@ -3554,7 +3558,7 @@
Level: intermediate
Notes:
- The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
+ The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
thus you CANNOT change the matrix entries by changing the values of a[] after you have
called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
@@ -3563,9 +3567,9 @@
block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory
with column-major ordering within blocks.
- The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
+ The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array.
-.seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
+.seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
`MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
@*/
PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baij2.c petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baij2.c
--- petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baij2.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baij2.c 2023-02-27 23:11:05.000000000 +0100
@@ -169,7 +169,7 @@
PetscCall(ISGetLocalSize(isrow, &nrows));
PetscCall(ISGetLocalSize(iscol, &ncols));
- /* Verify if the indices corespond to each element in a block
+ /* Verify if the indices correspond to each element in a block
and form the IS with compressed IS */
maxmnbs = PetscMax(a->mbs, a->nbs);
PetscCall(PetscMalloc2(maxmnbs, &vary, maxmnbs, &iary));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baijfact.c petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baijfact.c
--- petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baijfact.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baijfact.c 2023-02-27 23:11:05.000000000 +0100
@@ -1194,7 +1194,7 @@
B->info.factor_mallocs = reallocs;
B->info.fill_ratio_given = fill;
if (ai[am] != 0.) {
- /* nonzeros in lower triangular part of A (includign diagonals)= (ai[am]+am)/2 */
+ /* nonzeros in lower triangular part of A (including diagonals)= (ai[am]+am)/2 */
B->info.fill_ratio_needed = ((PetscReal)2 * ui[am]) / (ai[am] + am);
} else {
B->info.fill_ratio_needed = 0.0;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baijmkl/baijmkl.c petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baijmkl/baijmkl.c
--- petsc-3.18.4+dfsg1/src/mat/impls/baij/seq/baijmkl/baijmkl.c 2022-10-26 15:00:16.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/baij/seq/baijmkl/baijmkl.c 2023-02-27 23:11:05.000000000 +0100
@@ -1,7 +1,7 @@
/*
Defines basic operations for the MATSEQBAIJMKL matrix class.
Uses sparse BLAS operations from the Intel Math Kernel Library (MKL)
- wherever possible. If used MKL verion is older than 11.3 PETSc default
+ wherever possible. If used MKL version is older than 11.3 PETSc default
code for sparse matrix operations is used.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/composite/mcomposite.c petsc-3.18.5+dfsg1/src/mat/impls/composite/mcomposite.c
--- petsc-3.18.4+dfsg1/src/mat/impls/composite/mcomposite.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/composite/mcomposite.c 2023-02-27 23:11:05.000000000 +0100
@@ -264,7 +264,7 @@
if (shell->Mvctx) { /* Have a merged Mvctx */
/* Suppose we want to compute y = sMx, where s is the scaling factor and A, B are matrix M's diagonal/off-diagonal part. We could do
- in y = s(Ax1 + Bx2) or y = sAx1 + sBx2. The former incurs less FLOPS than the latter, but the latter provides an oppertunity to
+ in y = s(Ax1 + Bx2) or y = sAx1 + sBx2. The former incurs less FLOPS than the latter, but the latter provides an opportunity to
overlap communication/computation since we can do sAx1 while communicating x2. Here, we use the former approach.
*/
PetscCall(VecScatterBegin(shell->Mvctx, in, shell->gvec, INSERT_VALUES, SCATTER_FORWARD));
@@ -714,7 +714,7 @@
Level: advanced
Note:
- The resulting matrix is the same regardles of the `MatCompositeMergeType`. Only the order of operation is changed.
+ The resulting matrix is the same regardless of the `MatCompositeMergeType`. Only the order of operation is changed.
If set to `MAT_COMPOSITE_MERGE_RIGHT` the order of the merge is mat[nmat-1]*(mat[nmat-2]*(...*(mat[1]*mat[0])))
otherwise the order is (((mat[nmat-1]*mat[nmat-2])*mat[nmat-3])*...)*mat[0].
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/dense/mpi/mpidense.c petsc-3.18.5+dfsg1/src/mat/impls/dense/mpi/mpidense.c
--- petsc-3.18.4+dfsg1/src/mat/impls/dense/mpi/mpidense.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/dense/mpi/mpidense.c 2023-02-27 23:11:05.000000000 +0100
@@ -305,7 +305,7 @@
PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */
/* No parallel redistribution currently supported! Should really check each index set
- to comfirm that it is OK. ... Currently supports only submatrix same partitioning as
+ to confirm that it is OK. ... Currently supports only submatrix same partitioning as
original matrix! */
PetscCall(MatGetLocalSize(A, &nlrows, &nlcols));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/dense/mpi/mpidense.h petsc-3.18.5+dfsg1/src/mat/impls/dense/mpi/mpidense.h
--- petsc-3.18.4+dfsg1/src/mat/impls/dense/mpi/mpidense.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/dense/mpi/mpidense.h 2023-02-27 23:11:05.000000000 +0100
@@ -2,7 +2,7 @@
#include <../src/mat/impls/dense/seq/dense.h>
#include <petscsf.h>
-/* Data stuctures for basic parallel dense matrix */
+/* Data structures for basic parallel dense matrix */
typedef struct { /* used by MatMatMultxxx_MPIDense_MPIDense() */
Mat Ae, Be, Ce; /* matrix in Elemental format */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/fft/fftw/fftw.c petsc-3.18.5+dfsg1/src/mat/impls/fft/fftw/fftw.c
--- petsc-3.18.4+dfsg1/src/mat/impls/fft/fftw/fftw.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/fft/fftw/fftw.c 2023-02-27 23:11:05.000000000 +0100
@@ -23,7 +23,7 @@
PetscInt partial_dim;
fftw_plan p_forward, p_backward;
unsigned p_flag; /* planner flags, FFTW_ESTIMATE,FFTW_MEASURE, FFTW_PATIENT, FFTW_EXHAUSTIVE */
- PetscScalar *finarray, *foutarray, *binarray, *boutarray; /* keep track of arrays becaue fftw plan should be
+ PetscScalar *finarray, *foutarray, *binarray, *boutarray; /* keep track of arrays because fftw plan should be
executed for the arrays with which the plan was created */
} Mat_FFTW;
@@ -699,7 +699,7 @@
}
/* fftw vectors have their data array allocated by fftw_malloc, such that v->array=xxx but
v->array_allocated=NULL. A regular replacearray call won't free the memory and only causes
- memory leaks. We void these pointers here to avoid acident uses.
+ memory leaks. We void these pointers here to avoid accident uses.
*/
if (fin) (*fin)->ops->replacearray = NULL;
if (fout) (*fout)->ops->replacearray = NULL;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/hypre/mhypre.c petsc-3.18.5+dfsg1/src/mat/impls/hypre/mhypre.c
--- petsc-3.18.4+dfsg1/src/mat/impls/hypre/mhypre.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/hypre/mhypre.c 2023-02-27 23:11:05.000000000 +0100
@@ -215,7 +215,7 @@
PetscFunctionBegin;
pdiag = (Mat_SeqAIJ *)pA->A->data;
poffd = (Mat_SeqAIJ *)pA->B->data;
- /* cstart is only valid for square MPIAIJ layed out in the usual way */
+ /* cstart is only valid for square MPIAIJ laid out in the usual way */
PetscCall(MatGetOwnershipRange(A, &cstart, NULL));
PetscCallExternal(HYPRE_IJMatrixGetObjectType, ij, &type);
@@ -625,7 +625,7 @@
}
/* we have to use hypre_Tfree to free the HYPRE arrays
- that PETSc now onws */
+ that PETSc now owns */
if (reuse == MAT_INPLACE_MATRIX) {
PetscInt nh;
void *ptrs[6] = {da, oa, dii, djj, oii, ojj};
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/is/matis.c petsc-3.18.5+dfsg1/src/mat/impls/is/matis.c
--- petsc-3.18.4+dfsg1/src/mat/impls/is/matis.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/is/matis.c 2023-02-27 23:11:05.000000000 +0100
@@ -870,7 +870,7 @@
lr[i] = l1;
lc[j] = l2;
- /* check compatibilty for local matrix reusage */
+ /* check compatibility for local matrix reusage */
if (rnest && !rnest[i][j] != !snest[ij]) lreuse = PETSC_FALSE;
}
}
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/mffd/mffd.c petsc-3.18.5+dfsg1/src/mat/impls/mffd/mffd.c
--- petsc-3.18.4+dfsg1/src/mat/impls/mffd/mffd.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/mffd/mffd.c 2023-02-27 23:11:05.000000000 +0100
@@ -93,7 +93,7 @@
/*@C
MatMFFDSetType - Sets the method that is used to compute the
- differencing parameter for finite differene matrix-free formulations.
+ differencing parameter for finite difference matrix-free formulations.
Input Parameters:
+ mat - the "matrix-free" matrix created via `MatCreateSNESMF()`, or `MatCreateMFFD()`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sbaij/mpi/mpisbaij.c petsc-3.18.5+dfsg1/src/mat/impls/sbaij/mpi/mpisbaij.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sbaij/mpi/mpisbaij.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/sbaij/mpi/mpisbaij.c 2023-02-27 23:11:05.000000000 +0100
@@ -221,7 +221,7 @@
}
/* Only add/insert a(i,j) with i<=j (blocks).
- Any a(i,j) with i>j input by user is ingored or generates an error
+ Any a(i,j) with i>j input by user is ignored or generates an error
*/
PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
{
@@ -2185,11 +2185,11 @@
and `MATMPISBAIJ` otherwise.
Options Database Key:
-. -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
+. -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
Level: beginner
-.seealso: `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ`
+.seealso: `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
M*/
/*@C
@@ -2223,7 +2223,7 @@
Notes:
- If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
+ If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
than it must be used on all processors that share the object for that argument.
If the *_nnz parameter is given then the *_nz parameter is ignored
@@ -2307,7 +2307,7 @@
. M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
. N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
. d_nz - number of block nonzeros per block row in diagonal portion of local
- submatrix (same for all local rows)
+ submatrix (same for all local rows)
. d_nnz - array containing the number of block nonzeros in the various block rows
in the upper triangular portion of the in diagonal portion of the local
(possibly different for each block block row) or NULL.
@@ -2340,7 +2340,7 @@
The user MUST specify either the local or global matrix dimensions
(possibly both).
- If` PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
+ If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
than it must be used on all processors that share the object for that argument.
If the *_nnz parameter is given then the *_nz parameter is ignored
@@ -2352,9 +2352,9 @@
local matrix (a rectangular submatrix).
The user can specify preallocated storage for the diagonal part of
- the local submatrix with either d_nz or d_nnz (not both). Set
+ the local submatrix with either d_nz or d_nnz (not both). Set
d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
- memory allocation. Likewise, specify preallocated storage for the
+ memory allocation. Likewise, specify preallocated storage for the
off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
@@ -2371,14 +2371,14 @@
Thus, any entries in the d locations are stored in the d (diagonal)
submatrix, and any entries in the o locations are stored in the
- o (off-diagonal) submatrix. Note that the d matrix is stored in
+ o (off-diagonal) submatrix. Note that the d matrix is stored in
MatSeqSBAIJ format and the o submatrix in `MATSEQBAIJ` format.
Now d_nz should indicate the number of block nonzeros per row in the upper triangular
plus the diagonal part of the d matrix,
and o_nz should indicate the number of block nonzeros per row in the o matrix.
In general, for PDE problems in which most nonzeros are near the diagonal,
- one expects d_nz >> o_nz. For large problems you MUST preallocate memory
+ one expects d_nz >> o_nz. For large problems you MUST preallocate memory
or you will get TERRIBLE performance; see the users' manual chapter on
matrices.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sbaij/mpi/sbaijov.c petsc-3.18.5+dfsg1/src/mat/impls/sbaij/mpi/sbaijov.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sbaij/mpi/sbaijov.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/sbaij/mpi/sbaijov.c 2023-02-27 23:11:05.000000000 +0100
@@ -461,7 +461,7 @@
PetscInt row, mbs, Mbs, *nidx_i, col, col_max, isz, isz0, *ai, *aj, *bi, *bj, *garray, rstart, l;
PetscInt a_start, a_end, b_start, b_end, i, j, k, is_max, *idx_i, n;
PetscBT table0; /* mark the indices of input is[] for look up */
- PetscBT table_i; /* poits to i-th table. When whose=OTHER, a single table is used for all is[] */
+ PetscBT table_i; /* points to i-th table. When whose=OTHER, a single table is used for all is[] */
PetscFunctionBegin;
Mbs = c->Mbs;
@@ -530,7 +530,7 @@
k++;
if (k >= isz0) break; /* for (row=0; row<mbs; row++) */
} else { /* row is not on input is[i]:
- do col serach: add row onto nidx_i if there is a col in nidx_i */
+ do col search: add row onto nidx_i if there is a col in nidx_i */
for (l = a_start; l < a_end; l++) { /* Amat */
col = aj[l] + rstart;
if (col > col_max) break;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaij2.c petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaij2.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaij2.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaij2.c 2023-02-27 23:11:05.000000000 +0100
@@ -64,7 +64,7 @@
}
k++;
if (k >= n) break; /* for (brow=0; brow<mbs; brow++) */
- } else { /* brow is not on nidx - col serach: add brow onto nidx if there is a bcol in nidx */
+ } else { /* brow is not on nidx - col search: add brow onto nidx if there is a bcol in nidx */
for (l = start; l < end; l++) {
bcol = aj[l];
if (bcol > bcol_max) break;
@@ -209,7 +209,7 @@
PetscCall(ISGetLocalSize(isrow, &nrows));
PetscCall(ISGetLocalSize(iscol, &ncols));
- /* Verify if the indices corespond to each element in a block
+ /* Verify if the indices correspond to each element in a block
and form the IS with compressed IS */
maxmnbs = PetscMax(a->mbs, a->nbs);
PetscCall(PetscMalloc2(maxmnbs, &vary, maxmnbs, &iary));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaij.c petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaij.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaij.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaij.c 2023-02-27 23:11:05.000000000 +0100
@@ -912,7 +912,7 @@
}
/* Only add/insert a(i,j) with i<=j (blocks).
- Any a(i,j) with i>j input by user is ingored.
+ Any a(i,j) with i>j input by user is ignored.
*/
PetscErrorCode MatSetValues_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaijfact.c petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaijfact.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sbaij/seq/sbaijfact.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/sbaij/seq/sbaijfact.c 2023-02-27 23:11:05.000000000 +0100
@@ -400,7 +400,7 @@
/*
This code originally uses Modified Sparse Row (MSR) storage
- (see page 85, "Iterative Methods ..." by Saad) for the output matrix B - bad choise!
+ (see page 85, "Iterative Methods ..." by Saad) for the output matrix B - bad choice!
Then it is rewritten so the factor B takes seqsbaij format. However the associated
MatCholeskyFactorNumeric_() have not been modified for the cases of bs>1 or !perm_identity,
thus the original code in MSR format is still used for these cases.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sell/mpi/mpisell.c petsc-3.18.5+dfsg1/src/mat/impls/sell/mpi/mpisell.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sell/mpi/mpisell.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/sell/mpi/mpisell.c 2023-02-27 23:11:05.000000000 +0100
@@ -19,7 +19,7 @@
Level: beginner
-.seealso: `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL`
+.seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL`
M*/
PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is)
@@ -40,7 +40,7 @@
number to the local number in the off-diagonal part of the local
storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at
a slightly higher hash table cost; without it it is not scalable (each processor
-has an order N integer array but is fast to acess.
+has an order N integer array but is fast to access.
*/
PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat)
{
@@ -1244,7 +1244,7 @@
/*@C
MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format.
For good matrix assembly performance the user should preallocate the matrix storage by
- setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz).
+ setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
Collective
@@ -1254,7 +1254,7 @@
(same value is used for all local rows)
. d_nnz - array containing the number of nonzeros in the various rows of the
DIAGONAL portion of the local submatrix (possibly different for each row)
- or NULL (`PETSC_NULL_INTEGER` in Fortran), if d_nz is used to specify the nonzero structure.
+ or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
The size of this array is equal to the number of local rows, i.e 'm'.
For matrices that will be factored, you must leave room for (and set)
the diagonal entry even if it is zero.
@@ -1262,41 +1262,15 @@
submatrix (same value is used for all local rows).
- o_nnz - array containing the number of nonzeros in the various rows of the
OFF-DIAGONAL portion of the local submatrix (possibly different for
- each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if o_nz is used to specify the nonzero
+ each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
structure. The size of this array is equal to the number
of local rows, i.e 'm'.
- If the *_nnz parameter is given then the *_nz parameter is ignored
-
- The stored row and column indices begin with zero.
-
- The parallel matrix is partitioned such that the first m0 rows belong to
- process 0, the next m1 rows belong to process 1, the next m2 rows belong
- to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
-
- The DIAGONAL portion of the local submatrix of a processor can be defined
- as the submatrix which is obtained by extraction the part corresponding to
- the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
- first row that belongs to the processor, r2 is the last row belonging to
- the this processor, and c1-c2 is range of indices of the local part of a
- vector suitable for applying the matrix to. This is an mxn matrix. In the
- common case of a square matrix, the row and column ranges are the same and
- the DIAGONAL part is also square. The remaining portion of the local
- submatrix (mxN) constitute the OFF-DIAGONAL portion.
-
- If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
-
- You can call `MatGetInfo()` to get information on how effective the preallocation was;
- for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
- You can also run with the option -info and look for messages with the string
- malloc in them to see if additional memory allocation was needed.
-
Example usage:
-
Consider the following 8x8 matrix with 34 non-zero values, that is
assembled across 3 processors. Lets assume that proc0 owns 3 rows,
proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
- as follows:
+ as follows
.vb
1 2 0 | 0 3 0 | 0 4
@@ -1333,10 +1307,10 @@
part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL
matrix, ans [DF] as another SeqSELL matrix.
- When d_nz, o_nz parameters are specified, d_nz storage elements are
+ When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
allocated for every row of the local diagonal submatrix, and o_nz
storage locations are allocated for every row of the OFF-DIAGONAL submat.
- One way to choose d_nz and o_nz is to use the max nonzerors per local
+ One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
In this case, the values of d_nz,o_nz are:
.vb
@@ -1349,7 +1323,7 @@
for proc3. i.e we are using 12+15+10=37 storage locations to store
34 values.
- When d_nnz, o_nnz parameters are specified, the storage is specified
+ When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
In the above case the values for d_nnz,o_nnz are:
.vb
@@ -1362,7 +1336,33 @@
Level: intermediate
-.seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`,
+ Notes:
+ If the *_nnz parameter is given then the *_nz parameter is ignored
+
+ The stored row and column indices begin with zero.
+
+ The parallel matrix is partitioned such that the first m0 rows belong to
+ process 0, the next m1 rows belong to process 1, the next m2 rows belong
+ to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
+
+ The DIAGONAL portion of the local submatrix of a processor can be defined
+ as the submatrix which is obtained by extraction the part corresponding to
+ the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
+ first row that belongs to the processor, r2 is the last row belonging to
+ the this processor, and c1-c2 is range of indices of the local part of a
+ vector suitable for applying the matrix to. This is an mxn matrix. In the
+ common case of a square matrix, the row and column ranges are the same and
+ the DIAGONAL part is also square. The remaining portion of the local
+ submatrix (mxN) constitute the OFF-DIAGONAL portion.
+
+ If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
+
+ You can call `MatGetInfo()` to get information on how effective the preallocation was;
+ for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
+ You can also run with the option -info and look for messages with the string
+ malloc in them to see if additional memory allocation was needed.
+
+.seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`,
`MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL`
@*/
PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
@@ -1383,7 +1383,7 @@
Level: beginner
-.seealso: `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
+.seealso: `Mat`, `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
M*/
/*@C
@@ -1476,7 +1476,7 @@
Consider the following 8x8 matrix with 34 non-zero values, that is
assembled across 3 processors. Lets assume that proc0 owns 3 rows,
proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
- as follows:
+ as follows
.vb
1 2 0 | 0 3 0 | 0 4
@@ -1542,7 +1542,7 @@
Level: intermediate
-.seealso: `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`,
+.seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`,
`MATMPISELL`, `MatCreateMPISELLWithArrays()`
@*/
PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A)
@@ -1585,14 +1585,15 @@
Input Parameters:
+ A - the matrix
. scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
-- row, col - index sets of rows and columns to extract (or NULL)
+. row - index sets of rows to extract (or `NULL`)
+- col - index sets of columns to extract (or `NULL`)
Output Parameter:
. A_loc - the local sequential matrix generated
Level: developer
-.seealso: `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()`
+.seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()`
@*/
PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
{
@@ -1812,7 +1813,7 @@
Level: beginner
-.seealso: `MATSELL`, `MATSEQSELL` `MatCreateSELL()`
+.seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()`
M*/
PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sell/seq/sell.c petsc-3.18.5+dfsg1/src/mat/impls/sell/seq/sell.c
--- petsc-3.18.4+dfsg1/src/mat/impls/sell/seq/sell.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/sell/seq/sell.c 2023-02-27 23:11:05.000000000 +0100
@@ -52,33 +52,34 @@
Input Parameters:
+ B - The `MATSEQSELL` matrix
- . nz - number of nonzeros per row (same for all rows)
- - nnz - array containing the number of nonzeros in the various rows
- (possibly different for each row) or NULL
+ . rlenmax - number of nonzeros per row (same for all rows)
+ - rlen - array containing the number of nonzeros in the various rows
+ (possibly different for each row) or `NULL`
+
+ Level: intermediate
Notes:
- If nnz is given then nz is ignored.
+ If `rlen` is given then `rlenmax` is ignored.
- Specify the preallocated storage with either nz or nnz (not both).
- Set nz = `PETSC_DEFAULT` and nnz = NULL for PETSc to control dynamic memory
+ Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
+ Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
allocation. For large problems you MUST preallocate memory or you
will get TERRIBLE performance, see the users' manual chapter on matrices.
You can call `MatGetInfo()` to get information on how effective the preallocation was;
for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
- You can also run with the option -info and look for messages with the string
+ You can also run with the option `-info` and look for messages with the string
malloc in them to see if additional memory allocation was needed.
- Developers: Use nz of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
+ Developers Note:
+ Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
entries or columns indices.
The maximum number of nonzeos in any row should be as accurate as possible.
If it is underestimated, you will get bad performance due to reallocation
- (MatSeqXSELLReallocateSELL).
-
- Level: intermediate
+ (`MatSeqXSELLReallocateSELL()`).
- .seealso: `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
+ .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
@*/
PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
{
@@ -335,7 +336,7 @@
vec_y3 = _mm512_setzero_pd();
vec_y4 = _mm512_setzero_pd();
- j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice columnn */
+ j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
case 3:
AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
@@ -551,7 +552,7 @@
vec_y3 = _mm512_setzero_pd();
vec_y4 = _mm512_setzero_pd();
- j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice columnn */
+ j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
case 3:
AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
@@ -1926,7 +1927,7 @@
Level: intermediate
- .seealso: `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()`
+ .seealso: `Mat`, `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()`
@*/
PetscErrorCode MatSeqSELLRestoreArray(Mat A, PetscScalar **array)
{
@@ -2071,7 +2072,7 @@
Level: beginner
-.seealso: `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
+.seealso: `Mat`, `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
M*/
/*MC
@@ -2126,7 +2127,7 @@
. * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512},
Proceedings of the 47th International Conference on Parallel Processing, 2018.
-.seealso: `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
+.seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
M*/
/*@C
@@ -2159,7 +2160,7 @@
Level: intermediate
- .seealso: `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL`
+ .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL`
@*/
PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt maxallocrow, const PetscInt rlen[], Mat *A)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/sell/seq/sell.h petsc-3.18.5+dfsg1/src/mat/impls/sell/seq/sell.h
--- petsc-3.18.4+dfsg1/src/mat/impls/sell/seq/sell.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/impls/sell/seq/sell.h 2023-02-27 23:11:05.000000000 +0100
@@ -82,7 +82,7 @@
PetscCall(PetscArraycpy(new_colidx + SIDX[SID + 1] + 8, COLIDX + SIDX[SID + 1], SIDX[AM >> 3] - SIDX[SID + 1])); \
/* update slice_idx */ \
for (ii = SID + 1; ii <= AM >> 3; ii++) SIDX[ii] += 8; \
- /* update pointers. Notice that they point to the FIRST postion of the row */ \
+ /* update pointers. Notice that they point to the FIRST position of the row */ \
CP = new_colidx + SIDX[SID] + (ROW & 0x07); \
VP = new_val + SIDX[SID] + (ROW & 0x07); \
/* free up old matrix storage */ \
@@ -133,7 +133,7 @@
PetscCall(PetscArraycpy(new_colidx, a->colidx, a->sliidx[row / 8 + 1])); \
PetscCall(PetscArraycpy(new_val + a->sliidx[row / 8 + 1] + 8, a->val + a->sliidx[row / 8 + 1], a->sliidx[a->totalslices] - a->sliidx[row / 8 + 1])); \
PetscCall(PetscArraycpy(new_colidx + a->sliidx[row / 8 + 1] + 8, a->colidx + a->sliidx[row / 8 + 1], a->sliidx[a->totalslices] - a->sliidx[row / 8 + 1])); \
- /* update pointers. Notice that they point to the FIRST postion of the row */ \
+ /* update pointers. Notice that they point to the FIRST position of the row */ \
cp = new_colidx + a->sliidx[row / 8] + (row & 0x07); \
vp = new_val + a->sliidx[row / 8] + (row & 0x07); \
/* free up old matrix storage */ \
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/impls/shell/shell.c petsc-3.18.5+dfsg1/src/mat/impls/shell/shell.c
--- petsc-3.18.4+dfsg1/src/mat/impls/shell/shell.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/impls/shell/shell.c 2023-02-27 23:11:05.000000000 +0100
@@ -1720,8 +1720,8 @@
A is the user provided function.
- `KSP`/`PC` uses changes in the` Mat`'s "state" to decide if preconditioners need to be rebuilt: `PCSetUp()` only calls the setup() for
- for the PC implementation if the Mat state has increased from the previous call. Thus to get changes in a `MATSHELL` to trigger
+ `KSP`/`PC` uses changes in the `Mat`'s "state" to decide if preconditioners need to be rebuilt: `PCSetUp()` only calls the setup() for
+ for the `PC` implementation if the `Mat` state has increased from the previous call. Thus to get changes in a `MATSHELL` to trigger
an update in the preconditioner you must call `MatAssemblyBegin()` and `MatAssemblyEnd()` or `PetscObjectStateIncrease`((`PetscObject`)mat);
each time the `MATSHELL` matrix has changed.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/interface/matproduct.c petsc-3.18.5+dfsg1/src/mat/interface/matproduct.c
--- petsc-3.18.4+dfsg1/src/mat/interface/matproduct.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/interface/matproduct.c 2023-02-27 23:11:05.000000000 +0100
@@ -216,7 +216,7 @@
If the type of any of the input matrices is different than what was previously used, or their symmetry flag changed but
the symbolic phase took advantage of their symmetry, the product is cleared and `MatProductSetFromOptions()` and `MatProductSymbolic()` are invoked again.
-.seealso: `MatProductCreate()`, `MatProductSetFromOptions()`, `MatProductSymbolic().` `MatProductClear()`
+.seealso: `Mat`, `MatProductCreate()`, `MatProductSetFromOptions()`, `MatProductSymbolic().` `MatProductClear()`
@*/
PetscErrorCode MatProductReplaceMats(Mat A, Mat B, Mat C, Mat D)
{
@@ -516,7 +516,7 @@
Level: intermediate
-.seealso: `MatSetFromOptions()`, `MatProductCreate()`, `MatProductCreateWithMat()`, `MatProductNumeric()`, `MatProductSetType()`, `MatProductSetAlgorithm()`
+.seealso: `Mat`, `MatSetFromOptions()`, `MatProductCreate()`, `MatProductCreateWithMat()`, `MatProductNumeric()`, `MatProductSetType()`, `MatProductSetAlgorithm()`
@*/
PetscErrorCode MatProductSetFromOptions(Mat mat)
{
@@ -538,12 +538,13 @@
Logically Collective
- Input Parameter:
-. mat - the matrix obtained with `MatProductCreate()` or `MatProductCreateWithMat()`
+ Input Parameters:
++ mat - the matrix obtained with `MatProductCreate()` or `MatProductCreateWithMat()`
+- viewer - where `mat` should be reviewed
Level: intermediate
-.seealso: `MatProductSetFromOptions()`, `MatView()`, `MatProductCreate()`, `MatProductCreateWithMat()`
+.seealso: `Mat`, `MatProductSetFromOptions()`, `MatView()`, `MatProductCreate()`, `MatProductCreateWithMat()`
@*/
PetscErrorCode MatProductView(Mat mat, PetscViewer viewer)
{
@@ -635,7 +636,7 @@
Note:
`MatProductSymbolic()` must have been called on mat before calling this function
-.seealso: `MatProductSetAlgorithm()`, `MatProductSetType()`, `MatProductCreate()`, `MatSetType()`, `MatProductSymbolic()`
+.seealso: `Mat`, `MatProductSetAlgorithm()`, `MatProductSetType()`, `MatProductCreate()`, `MatSetType()`, `MatProductSymbolic()`
@*/
PetscErrorCode MatProductNumeric(Mat mat)
{
@@ -754,7 +755,7 @@
Note:
`MatProductSetFromOptions()` must have been called on mat before calling this function
-.seealso: `MatProductCreate()`, `MatProductCreateWithMat()`, `MatProductSetFromOptions()`, `MatProductNumeric()`, `MatProductSetType()`, `MatProductSetAlgorithm()`
+.seealso: `Mat`, `MatProductCreate()`, `MatProductCreateWithMat()`, `MatProductSetFromOptions()`, `MatProductNumeric()`, `MatProductSetType()`, `MatProductSetAlgorithm()`
@*/
PetscErrorCode MatProductSymbolic(Mat mat)
{
@@ -819,7 +820,7 @@
Level: intermediate
-.seealso: `MatProductSetFromOptions()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductCreate()`
+.seealso: `Mat`, `MatProductSetFromOptions()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductCreate()`
@*/
PetscErrorCode MatProductSetFill(Mat mat, PetscReal fill)
{
@@ -846,7 +847,7 @@
Level: intermediate
-.seealso: `MatProductSetType()`, `MatProductSetFill()`, `MatProductCreate()`, `MatProductAlgorithm`, `MatProductType`
+.seealso: `Mat`, `MatProductSetType()`, `MatProductSetFill()`, `MatProductCreate()`, `MatProductAlgorithm`, `MatProductType`
@*/
PetscErrorCode MatProductSetAlgorithm(Mat mat, MatProductAlgorithm alg)
{
@@ -872,7 +873,7 @@
Note:
The small t represents the transpose operation.
-.seealso: `MatProductCreate()`, `MatProductType`, `MatProductType`,
+.seealso: `Mat`, `MatProductCreate()`, `MatProductType`, `MatProductType`,
`MATPRODUCT_AB`, `MATPRODUCT_AtB`, `MATPRODUCT_ABt`, `MATPRODUCT_PtAP`, `MATPRODUCT_RARt`, `MATPRODUCT_ABC`
@*/
PetscErrorCode MatProductSetType(Mat mat, MatProductType productype)
@@ -907,7 +908,7 @@
After having called this function, matrix-matrix operations can no longer be used on mat
-.seealso: `MatProductCreate()`
+.seealso: `Mat`, `MatProductCreate()`
@*/
PetscErrorCode MatProductClear(Mat mat)
{
@@ -964,22 +965,19 @@
Input Parameters:
+ A - the first matrix
. B - the second matrix
-. C - the third matrix (optional)
+. C - the third matrix (optional, use `NULL` if not needed)
- D - the matrix which will be used to hold the product
- Output Parameters:
-. D - the product matrix
+ Level: intermediate
Notes:
Use `MatProductCreate()` if the matrix you wish computed (the D matrix) does not already exist
See `MatProductCreate()` for details on the usage of the MatProduct routines
- Any product data currently attached to D will be cleared
-
- Level: intermediate
+ Any product data currently attached to `D` will be cleared
-.seealso: `MatProductCreate()`, `MatProductClear()`
+.seealso: `Mat`, `MatProductCreate()`, `MatProductClear()`
@*/
PetscErrorCode MatProductCreateWithMat(Mat A, Mat B, Mat C, Mat D)
{
@@ -1053,7 +1051,7 @@
It is undocumented what happens if the nonzero structure of the input matrices changes. Is the symbolic stage automatically redone? Does it crash?
Is there error checking for it?
-.seealso: `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductClear()`
+.seealso: `Mat`, `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductClear()`
@*/
PetscErrorCode MatProductCreate(Mat A, Mat B, Mat C, Mat *D)
{
@@ -1208,7 +1206,7 @@
Level: intermediate
-.seealso: `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductCreate()`, `MatProductType`, `MatProductAlgorithm`
+.seealso: `Mat`, `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductCreate()`, `MatProductType`, `MatProductAlgorithm`
@*/
PetscErrorCode MatProductGetType(Mat mat, MatProductType *mtype)
{
@@ -1235,7 +1233,7 @@
Level: intermediate
-.seealso: `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductCreate()`
+.seealso: `Mat`, `MatProductCreateWithMat()`, `MatProductSetType()`, `MatProductSetAlgorithm()`, `MatProductCreate()`
@*/
PetscErrorCode MatProductGetMats(Mat mat, Mat *A, Mat *B, Mat *C)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/interface/matreg.c petsc-3.18.5+dfsg1/src/mat/interface/matreg.c
--- petsc-3.18.4+dfsg1/src/mat/interface/matreg.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/interface/matreg.c 2023-02-27 23:11:05.000000000 +0100
@@ -254,8 +254,10 @@
Not Collective
Input Parameters:
-+ name - name of a new user-defined matrix type
-- routine_create - routine to create method context
++ sname - name of a new user-defined matrix type
+- function - routine to create method context
+
+ Level: advanced
Note:
`MatRegister()` may be called multiple times to add several user-defined solvers.
@@ -270,8 +272,6 @@
or at runtime via the option
$ -mat_type my_mat
- Level: advanced
-
.seealso: `Mat`, `MatType`, `MatSetType()`, `MatRegisterAll()`
@*/
PetscErrorCode MatRegister(const char sname[], PetscErrorCode (*function)(Mat))
@@ -294,6 +294,8 @@
. sname - the name of the sequential matrix type, for example, `MATSEQAIJ`
- mname - the name of the parallel matrix type, for example, `MATMPIAIJ`
+ Level: developer
+
Note:
The matrix rootname should not be confused with the base type of the function `PetscObjectBaseTypeCompare()`
@@ -303,8 +305,6 @@
appropriate creation routine. Why have two different ways of implementing the same functionality for different types of objects? It is
confusing.
- Level: developer
-
.seealso: `Mat`, `MatType`, `PetscObjectBaseTypeCompare()`
@*/
PetscErrorCode MatRegisterRootName(const char rname[], const char sname[], const char mname[])
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/interface/matrix.c petsc-3.18.5+dfsg1/src/mat/interface/matrix.c
--- petsc-3.18.4+dfsg1/src/mat/interface/matrix.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/interface/matrix.c 2023-02-27 23:11:05.000000000 +0100
@@ -48,14 +48,13 @@
const char *const MatFactorTypes[] = {"NONE", "LU", "CHOLESKY", "ILU", "ICC", "ILUDT", "QR", "MatFactorType", "MAT_FACTOR_", NULL};
/*@
- MatSetRandom - Sets all components of a matrix to random numbers. For sparse matrices that have been preallocated but not been assembled it randomly selects appropriate locations,
- for sparse matrices that already have locations it fills the locations with random numbers
+ MatSetRandom - Sets all components of a matrix to random numbers.
Logically Collective
Input Parameters:
+ x - the matrix
-- rctx - the `PetscRandom` object, formed by `PetscRandomCreate()`, or NULL and
+- rctx - the `PetscRandom` object, formed by `PetscRandomCreate()`, or `NULL` and
it will create one internally.
Output Parameter:
@@ -70,7 +69,12 @@
Level: intermediate
-.seealso: `PetscRandom`, `PetscRandomCreate()`, `MatZeroEntries()`, `MatSetValues()`, `PetscRandomCreate()`, `PetscRandomDestroy()`
+ Note:
+ For sparse matrices that have been preallocated but not been assembled it randomly selects appropriate locations,
+ for sparse matrices that already have locations it fills the locations with random numbers. It generates an error if used on sparse matrices that have
+ not been preallocated.
+
+.seealso: `Mat`, `PetscRandom`, `PetscRandomCreate()`, `MatZeroEntries()`, `MatSetValues()`, `PetscRandomCreate()`, `PetscRandomDestroy()`
@*/
PetscErrorCode MatSetRandom(Mat x, PetscRandom rctx)
{
@@ -122,7 +126,7 @@
This can be called on non-factored matrices that come from, for example, matrices used in SOR.
-.seealso: `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`,
+.seealso: `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`,
`MAT_FACTOR_NUMERIC_ZEROPIVOT`
@*/
PetscErrorCode MatFactorGetErrorZeroPivot(Mat mat, PetscReal *pivot, PetscInt *row)
@@ -152,7 +156,7 @@
Note:
This can also be called on non-factored matrices that come from, for example, matrices used in SOR.
-.seealso: `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`,
+.seealso: `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`,
`MatFactorError`
@*/
PetscErrorCode MatFactorGetError(Mat mat, MatFactorError *err)
@@ -177,7 +181,7 @@
Note:
This can also be called on non-factored matrices that come from, for example, matrices used in SOR.
-.seealso: `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`,
+.seealso: `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`,
`MatGetErrorCode()`, `MatFactorError`
@*/
PetscErrorCode MatFactorClearError(Mat mat)
@@ -254,11 +258,11 @@
Output Parameter:
. keptrows - the rows that are not completely zero
- Note:
- keptrows is set to NULL if all rows are nonzero.
-
Level: intermediate
+ Note:
+ `keptrows` is set to `NULL` if all rows are nonzero.
+
.seealso: `Mat`, `MatFindZeroRows()`
@*/
PetscErrorCode MatFindNonzeroRows(Mat mat, IS *keptrows)
@@ -283,11 +287,11 @@
Output Parameter:
. zerorows - the rows that are completely zero
- Note:
- zerorows is set to NULL if no rows are zero.
-
Level: intermediate
+ Note:
+ `zerorows` is set to `NULL` if no rows are zero.
+
.seealso: `Mat`, `MatFindNonzeroRows()`
@*/
PetscErrorCode MatFindZeroRows(Mat mat, IS *zerorows)
@@ -324,14 +328,14 @@
Output Parameters:
. a - the diagonal part (which is a SEQUENTIAL matrix)
+ Level: advanced
+
Notes:
See the manual page for `MatCreateAIJ()` for more information on the "diagonal part" of the matrix.
- Use caution, as the reference count on the returned matrix is not incremented and it is used as part of the containing MPI Mat's normal operation.
+ Use caution, as the reference count on the returned matrix is not incremented and it is used as part of `A`'s normal operation.
- Level: advanced
-
-.seelaso: `MatCreateAIJ()`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`
+.seealso: `Mat`, `MatCreateAIJ()`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`
@*/
PetscErrorCode MatGetDiagonalBlock(Mat A, Mat *a)
{
@@ -390,7 +394,7 @@
Level: advanced
-.seealso: `MatImaginaryPart()`
+.seealso: `Mat`, `MatImaginaryPart()`
@*/
PetscErrorCode MatRealPart(Mat mat)
{
@@ -416,11 +420,11 @@
+ nghosts - number of ghosts (note for `MATBAIJ` and `MATSBAIJ` matrices there is one ghost for each block)
- ghosts - the global indices of the ghost points
- Note:
- the nghosts and ghosts are suitable to pass into `VecCreateGhost()`
-
Level: advanced
+ Note:
+ `nghosts` and `ghosts` are suitable to pass into `VecCreateGhost()`
+
.seealso: `Mat`, `VecCreateGhost()`
@*/
PetscErrorCode MatGetGhosts(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
@@ -448,7 +452,7 @@
Level: advanced
-.seealso: `MatRealPart()`
+.seealso: `Mat`, `MatRealPart()`
@*/
PetscErrorCode MatImaginaryPart(Mat mat)
{
@@ -502,9 +506,11 @@
- row - the row to get
Output Parameters:
-+ ncols - if not NULL, the number of nonzeros in the row
-. cols - if not NULL, the column numbers
-- vals - if not NULL, the values
++ ncols - if not `NULL`, the number of nonzeros in the row
+. cols - if not `NULL`, the column numbers
+- vals - if not `NULL`, the values
+
+ Level: advanced
Notes:
This routine is provided for people who need to have direct access
@@ -514,7 +520,7 @@
`MatGetRow()` always returns 0-based column indices, regardless of
whether the internal representation is 0-based (default) or 1-based.
- For better efficiency, set cols and/or vals to NULL if you do
+ For better efficiency, set cols and/or vals to `NULL` if you do
not wish to extract these quantities.
The user can only examine the values extracted with `MatGetRow()`;
@@ -533,7 +539,7 @@
Use `MatSeqAIJGetArray()` and similar functions to access the numerical values for certain matrix types directly.
Fortran Note:
- The calling sequence from Fortran is
+ The calling sequence is
.vb
MatGetRow(matrix,row,ncols,cols,values,ierr)
Mat matrix (input)
@@ -548,9 +554,7 @@
Do not try to change the contents of the output arrays (cols and vals).
In some cases, this may corrupt the matrix.
- Level: advanced
-
-.seealso: `MatRestoreRow()`, `MatSetValues()`, `MatGetValues()`, `MatCreateSubMatrices()`, `MatGetDiagonal()`, `MatGetRowIJ()`, `MatRestoreRowIJ()`
+.seealso: `Mat`, `MatRestoreRow()`, `MatSetValues()`, `MatGetValues()`, `MatCreateSubMatrices()`, `MatGetDiagonal()`, `MatGetRowIJ()`, `MatRestoreRowIJ()`
@*/
PetscErrorCode MatGetRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[])
{
@@ -580,7 +584,7 @@
Level: advanced
-.seealso: `MatRealPart()`, `MatImaginaryPart()`, `VecConjugate()`, `MatTranspose()`
+.seealso: `Mat`, `MatRealPart()`, `MatImaginaryPart()`, `VecConjugate()`, `MatTranspose()`
@*/
PetscErrorCode MatConjugate(Mat mat)
{
@@ -605,15 +609,17 @@
. ncols, cols - the number of nonzeros and their columns
- vals - if nonzero the column values
+ Level: advanced
+
Notes:
This routine should be called after you have finished examining the entries.
- This routine zeros out ncols, cols, and vals. This is to prevent accidental
- us of the array after it has been restored. If you pass NULL, it will
- not zero the pointers. Use of cols or vals after `MatRestoreRow()` is invalid.
+ This routine zeros out `ncols`, `cols`, and `vals`. This is to prevent accidental
+ us of the array after it has been restored. If you pass `NULL`, it will
+ not zero the pointers. Use of `cols` or `vals` after `MatRestoreRow()` is invalid.
Fortran Notes:
- The calling sequence from Fortran is
+ The calling sequence is
.vb
MatRestoreRow(matrix,row,ncols,cols,values,ierr)
Mat matrix (input)
@@ -627,9 +633,7 @@
In Fortran `MatRestoreRow()` MUST be called after `MatGetRow()`
before another call to `MatGetRow()` can be made.
- Level: advanced
-
-.seealso: `MatGetRow()`
+.seealso: `Mat`, `MatGetRow()`
@*/
PetscErrorCode MatRestoreRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[])
{
@@ -654,12 +658,12 @@
Input Parameters:
. mat - the matrix
+ Level: advanced
+
Note:
The flag is to ensure that users are aware that `MatGetRow()` only provides the upper triangular part of the row for the matrices in `MATSBAIJ` format.
- Level: advanced
-
-.seealso: `MATSBAIJ`, `MatRestoreRowUpperTriangular()`
+.seealso: `Mat`, `MATSBAIJ`, `MatRestoreRowUpperTriangular()`
@*/
PetscErrorCode MatGetRowUpperTriangular(Mat mat)
{
@@ -682,12 +686,12 @@
Input Parameters:
. mat - the matrix
+ Level: advanced
+
Note:
This routine should be called after you have finished calls to `MatGetRow()` and `MatRestoreRow()`.
- Level: advanced
-
-.seealso: `MATSBAIJ`, `MatGetRowUpperTriangular()`
+.seealso: `Mat`, `MATSBAIJ`, `MatGetRowUpperTriangular()`
@*/
PetscErrorCode MatRestoreRowUpperTriangular(Mat mat)
{
@@ -706,12 +710,14 @@
MatSetOptionsPrefix - Sets the prefix used for searching for all
`Mat` options in the database.
- Logically Collective on A
+ Logically Collective
Input Parameters:
+ A - the matrix
- prefix - the prefix to prepend to all option names
+ Level: advanced
+
Notes:
A hyphen (-) must NOT be given at the beginning of the prefix name.
The first character of all runtime options is AUTOMATICALLY the hyphen.
@@ -720,9 +726,7 @@
prefix is automatically passed in from the PC calling the factorization. To set
it directly use `MatSetOptionsPrefixFactor()`
- Level: advanced
-
-.seealso: `MatSetFromOptions()`, `MatSetOptionsPrefixFactor()`
+.seealso: `Mat`, `MatSetFromOptions()`, `MatSetOptionsPrefixFactor()`
@*/
PetscErrorCode MatSetOptionsPrefix(Mat A, const char prefix[])
{
@@ -736,12 +740,14 @@
MatSetOptionsPrefixFactor - Sets the prefix used for searching for all matrix factor options in the database for
for matrices created with `MatGetFactor()`
- Logically Collective on A
+ Logically Collective
Input Parameters:
+ A - the matrix
- prefix - the prefix to prepend to all option names for the factored matrix
+ Level: developer
+
Notes:
A hyphen (-) must NOT be given at the beginning of the prefix name.
The first character of all runtime options is AUTOMATICALLY the hyphen.
@@ -749,9 +755,7 @@
Normally the prefix is automatically passed in from the `PC` calling the factorization. To set
it directly when not using `KSP`/`PC` use `MatSetOptionsPrefixFactor()`
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSetFromOptions()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSetFromOptions()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`
@*/
PetscErrorCode MatSetOptionsPrefixFactor(Mat A, const char prefix[])
{
@@ -772,12 +776,14 @@
MatAppendOptionsPrefixFactor - Appends to the prefix used for searching for all matrix factor options in the database for
for matrices created with `MatGetFactor()`
- Logically Collective on A
+ Logically Collective
Input Parameters:
+ A - the matrix
- prefix - the prefix to prepend to all option names for the factored matrix
+ Level: developer
+
Notes:
A hyphen (-) must NOT be given at the beginning of the prefix name.
The first character of all runtime options is AUTOMATICALLY the hyphen.
@@ -785,9 +791,7 @@
Normally the prefix is automatically passed in from the `PC` calling the factorization. To set
it directly when not using `KSP`/`PC` use `MatAppendOptionsPrefixFactor()`
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, PetscOptionsCreate()`, `PetscOptionsDestroy()`, `PetscObjectSetOptionsPrefix()`, `PetscObjectPrependOptionsPrefix()`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, PetscOptionsCreate()`, `PetscOptionsDestroy()`, `PetscObjectSetOptionsPrefix()`, `PetscObjectPrependOptionsPrefix()`,
`PetscObjectGetOptionsPrefix()`, `TSAppendOptionsPrefix()`, `SNESAppendOptionsPrefix()`, `KSPAppendOptionsPrefix()`, `MatSetOptionsPrefixFactor()`,
`MatSetOptionsPrefix()`
@*/
@@ -818,18 +822,18 @@
MatAppendOptionsPrefix - Appends to the prefix used for searching for all
matrix options in the database.
- Logically Collective on A
+ Logically Collective
Input Parameters:
+ A - the matrix
- prefix - the prefix to prepend to all option names
+ Level: advanced
+
Note:
A hyphen (-) must NOT be given at the beginning of the prefix name.
The first character of all runtime options is AUTOMATICALLY the hyphen.
- Level: advanced
-
.seealso: `Mat`, `MatGetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefix()`
@*/
PetscErrorCode MatAppendOptionsPrefix(Mat A, const char prefix[])
@@ -855,10 +859,10 @@
Level: advanced
Fortran Note:
- On the fortran side, the user should pass in a string 'prefix' of
+ On the fortran side, the user should pass in a string `prefix` of
sufficient length to hold the prefix.
-.seealso: `MatAppendOptionsPrefix()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefixFactor()`
+.seealso: `Mat`, `MatAppendOptionsPrefix()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefixFactor()`
@*/
PetscErrorCode MatGetOptionsPrefix(Mat A, const char *prefix[])
{
@@ -872,11 +876,13 @@
/*@
MatResetPreallocation - Reset matrix to use the original nonzero pattern provided by users.
- Collective on A
+ Collective
Input Parameters:
. A - the matrix
+ Level: beginner
+
Notes:
The allocated memory will be shrunk after calling `MatAssemblyBegin()` and `MatAssemblyEnd()` with `MAT_FINAL_ASSEMBLY`.
@@ -884,9 +890,7 @@
Currently only supported for `MATMPIAIJ` and `MATSEQAIJ` matrices.
- Level: beginner
-
-.seealso: `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatXAIJSetPreallocation()`
+.seealso: `Mat`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatXAIJSetPreallocation()`
@*/
PetscErrorCode MatResetPreallocation(Mat A)
{
@@ -900,11 +904,13 @@
/*@
MatSetUp - Sets up the internal matrix data structures for later use.
- Collective on A
+ Collective
Input Parameters:
. A - the matrix
+ Level: intermediate
+
Notes:
If the user has not set preallocation for this matrix then a default preallocation that is likely to be inefficient is used.
@@ -914,8 +920,6 @@
This routine is called internally by other matrix functions when needed so rarely needs to be called by users
- Level: intermediate
-
.seealso: `Mat`, `MatMult()`, `MatCreate()`, `MatDestroy()`
@*/
PetscErrorCode MatSetUp(Mat A)
@@ -945,7 +949,7 @@
/*@C
MatViewFromOptions - View properties of the matrix from the options database
- Collective on A
+ Collective
Input Parameters:
+ A - the matrix
@@ -955,6 +959,8 @@
Options Database Key:
. -mat_view [viewertype]:... - the viewer and its options
+ Level: intermediate
+
Notes:
.vb
If no value is provided ascii:stdout is used
@@ -967,8 +973,6 @@
saws[:communicatorname] publishes object to the Scientific Application Webserver (SAWs)
.ve
- Level: intermediate
-
.seealso: `Mat`, `MatView()`, `PetscObjectViewFromOptions()`, `MatCreate()`
@*/
PetscErrorCode MatViewFromOptions(Mat A, PetscObject obj, const char name[])
@@ -1056,7 +1060,7 @@
right mouse: continue with the simulation
.ve
-.seealso: `PetscViewerPushFormat()`, `PetscViewerASCIIOpen()`, `PetscViewerDrawOpen()`, `PetscViewer`, `Mat`,
+.seealso: `Mat`, `PetscViewerPushFormat()`, `PetscViewerASCIIOpen()`, `PetscViewerDrawOpen()`, `PetscViewer`,
`PetscViewerSocketOpen()`, `PetscViewerBinaryOpen()`, `MatLoad()`, `MatViewFromOptions()`
@*/
PetscErrorCode MatView(Mat mat, PetscViewer viewer)
@@ -1284,7 +1288,7 @@
References:
. * - MATLAB(R) Documentation, manual page of save(), https://www.mathworks.com/help/matlab/ref/save.html#btox10b-1-version
-.seealso: `PetscViewerBinaryOpen()`, `PetscViewerSetType()`, `MatView()`, `VecLoad()`
+.seealso: `Mat`, `PetscViewerBinaryOpen()`, `PetscViewerSetType()`, `MatView()`, `VecLoad()`
@*/
PetscErrorCode MatLoad(Mat mat, PetscViewer viewer)
{
@@ -1342,7 +1346,7 @@
/*@C
MatDestroy - Frees space taken by a matrix.
- Collective on A
+ Collective
Input Parameter:
. A - the matrix
@@ -1404,6 +1408,8 @@
. n, idxn - the number of columns and their global indices
- addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
+ Level: beginner
+
Notes:
If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call MatXXXXSetPreallocation() or
`MatSetUp()` before using this routine
@@ -1426,8 +1432,6 @@
The routine `MatSetValuesBlocked()` may offer much better efficiency
for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`).
- Level: beginner
-
Developer Note:
This is labeled with C so does not automatically generate Fortran stubs and interfaces
because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
@@ -1520,7 +1524,7 @@
This is labeled with C so does not automatically generate Fortran stubs and interfaces
because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
-.seealso: `MatSetOption()`, `MatSetValues()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
+.seealso: `Mat`, `MatSetOption()`, `MatSetValues()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
`InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`
@*/
PetscErrorCode MatSetValuesIS(Mat mat, IS ism, IS isn, const PetscScalar v[], InsertMode addv)
@@ -1551,8 +1555,10 @@
. row - the (block) row to set
- v - a logically two-dimensional array of values
+ Level: intermediate
+
Notes:
- By the values, v, are column-oriented (for the block version) and sorted
+ The values, `v`, are column-oriented (for the block version) and sorted
All the nonzeros in the row must be provided
@@ -1560,9 +1566,7 @@
The row must belong to this process
- Level: intermediate
-
-.seealso: `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
+.seealso: `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
`InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetValuesRow()`, `MatSetLocalToGlobalMapping()`
@*/
PetscErrorCode MatSetValuesRowLocal(Mat mat, PetscInt row, const PetscScalar v[])
@@ -1589,8 +1593,10 @@
. row - the (block) row to set
- v - a logically two-dimensional (column major) array of values for block matrices with blocksize larger than one, otherwise a one dimensional array of values
+ Level: advanced
+
Notes:
- The values, v, are column-oriented for the block version.
+ The values, `v`, are column-oriented for the block version.
All the nonzeros in the row must be provided
@@ -1598,9 +1604,7 @@
The row must belong to this process
- Level: advanced
-
-.seealso: `MatSetValues()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
+.seealso: `Mat`, `MatSetValues()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
`InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`
@*/
PetscErrorCode MatSetValuesRow(Mat mat, PetscInt row, const PetscScalar v[])
@@ -1642,7 +1646,7 @@
Level: beginner
Notes:
- By default the values, v, are row-oriented. See `MatSetOption()` for other options.
+ By default the values, `v`, are row-oriented. See `MatSetOption()` for other options.
Calls to `MatSetValuesStencil()` with the `INSERT_VALUES` and `ADD_VALUES`
options cannot be mixed without intervening calls to the assembly
@@ -1758,7 +1762,7 @@
Level: beginner
Notes:
- By default the values, v, are row-oriented and unsorted.
+ By default the values, `v`, are row-oriented and unsorted.
See `MatSetOption()` for other options.
Calls to `MatSetValuesBlockedStencil()` with the `INSERT_VALUES` and `ADD_VALUES`
@@ -1864,6 +1868,8 @@
. starts - starting point of ghost nodes on your processor in x, y, and z direction
- dof - number of degrees of freedom per node
+ Level: beginner
+
Notes:
Inspired by the structured grid interface to the HYPRE package
(www.llnl.gov/CASC/hyper)
@@ -1871,8 +1877,6 @@
For matrices generated with `DMCreateMatrix()` this routine is automatically called and so not needed by the
user.
- Level: beginner
-
.seealso: `Mat`, `MatStencil`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`
`MatSetValues()`, `MatSetValuesBlockedStencil()`, `MatSetValuesStencil()`
@*/
@@ -1902,8 +1906,10 @@
Input Parameters:
+ mat - the matrix
. v - a logically two-dimensional array of values
-. m, idxm - the number of block rows and their global block indices
-. n, idxn - the number of block columns and their global block indices
+. m - the number of block rows
+. idxm - the global block indices
+. n - the number of block columns
+. idxn - the global block indices
- addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` replaces existing entries with new values
Level: intermediate
@@ -1912,7 +1918,7 @@
If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call
MatXXXXSetPreallocation() or `MatSetUp()` before using this routine.
- The m and n count the NUMBER of blocks in the row direction and column direction,
+ The `m` and `n` count the NUMBER of blocks in the row direction and column direction,
NOT the total number of rows/columns; for example, if the block size is 2 and
you are passing in values for rows 2,3,4,5 then m would be 2 (not 4).
The values in idxm would be 1 2; that is the first index for each block divided by
@@ -1921,8 +1927,8 @@
Note that you must call `MatSetBlockSize()` when constructing this matrix (before
preallocating it).
- By default the values, v, are row-oriented, so the layout of
- v is the same as for `MatSetValues()`. See `MatSetOption()` for other options.
+ By default the values, `v`, are row-oriented, so the layout of
+ `v` is the same as for `MatSetValues()`. See `MatSetOption()` for other options.
Calls to `MatSetValuesBlocked()` with the `INSERT_VALUES` and `ADD_VALUES`
options cannot be mixed without intervening calls to the assembly
@@ -1931,7 +1937,7 @@
`MatSetValuesBlocked()` uses 0-based row and column numbers in Fortran
as well as in C.
- Negative indices may be passed in idxm and idxn, these rows and columns are
+ Negative indices may be passed in `idxm` and `idxn`, these rows and columns are
simply ignored. This allows easily inserting element stiffness matrices
with homogeneous Dirchlet boundary conditions that you don't want represented
in the matrix.
@@ -2026,12 +2032,16 @@
Input Parameters:
+ mat - the matrix
. v - a logically two-dimensional array for storing the values
-. m, idxm - the number of rows and their global indices
-- n, idxn - the number of columns and their global indices
+. m - the number of rows
+. idxm - the global indices of the rows
+. n - the number of columns
+- idxn - the global indices of the columns
+
+ Level: advanced
Notes:
- The user must allocate space (m*n `PetscScalar`s) for the values, v.
- The values, v, are then returned in a row-oriented format,
+ The user must allocate space (m*n `PetscScalar`s) for the values, `v`.
+ The values, `v`, are then returned in a row-oriented format,
analogous to that used by default in `MatSetValues()`.
`MatGetValues()` uses 0-based row and column numbers in
@@ -2042,15 +2052,13 @@
`MatSetValues()` and `MatGetValues()` CANNOT be made in succession
without intermediate matrix assembly.
- Negative row or column indices will be ignored and those locations in v[] will be
+ Negative row or column indices will be ignored and those locations in `v` will be
left unchanged.
- For the standard row-based matrix formats, idxm[] can only contain rows owned by the requesting MPI rank.
+ For the standard row-based matrix formats, `idxm` can only contain rows owned by the requesting MPI rank.
That is, rows with global index greater than or equal to rstart and less than rend where rstart and rend are obtainable
from `MatGetOwnershipRange`(mat,&rstart,&rend).
- Level: advanced
-
.seealso: `Mat`, `MatGetRow()`, `MatCreateSubMatrices()`, `MatSetValues()`, `MatGetOwnershipRange()`, `MatGetValuesLocal()`, `MatGetValue()`
@*/
PetscErrorCode MatGetValues(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
@@ -2080,8 +2088,10 @@
Input Parameters:
+ mat - the matrix
-. nrow, irow - number of rows and their local indices
-- ncol, icol - number of columns and their local indices
+. nrow - number of rows
+. irow - the row local indices
+. ncol - number of columns
+- icol - the column local indices
Output Parameter:
. y - a logically two-dimensional array of values
@@ -2153,13 +2163,13 @@
. rows - a concatenation of the rows for each block
- v - a concatenation of logically two-dimensional arrays of values
+ Level: advanced
+
Note:
`MatSetPreallocationCOO()` and `MatSetValuesCOO()` may be a better way to provide the values
In the future, we will extend this routine to handle rectangular blocks, and to allow multiple calls for a given matrix.
- Level: advanced
-
.seealso: `Mat`, `Mat`MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
`InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
@*/
@@ -2250,7 +2260,7 @@
/*@
MatSetLayouts - Sets the `PetscLayout` objects for rows and columns of a matrix
- Logically Collective on A
+ Logically Collective
Input Parameters:
+ A - the matrix
@@ -2262,7 +2272,7 @@
Note:
The `PetscLayout` objects are usually created automatically for the matrix so this routine rarely needs to be called.
-.seealso: `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatGetLayouts()`
+.seealso: `Mat`, `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatGetLayouts()`
@*/
PetscErrorCode MatSetLayouts(Mat A, PetscLayout rmap, PetscLayout cmap)
{
@@ -2287,7 +2297,7 @@
Level: advanced
-.seealso: [Matrix Layouts](sec_matlayout), `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatSetLayouts()`
+.seealso: `Mat`, [Matrix Layouts](sec_matlayout), `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatSetLayouts()`
@*/
PetscErrorCode MatGetLayouts(Mat A, PetscLayout *rmap, PetscLayout *cmap)
{
@@ -2313,11 +2323,15 @@
Input Parameters:
+ mat - the matrix
-. nrow, irow - number of rows and their local indices
-. ncol, icol - number of columns and their local indices
+. nrow - number of rows
+. irow - the row local indices
+. ncol - number of columns
+. icol - the column local indices
. y - a logically two-dimensional array of values
- addv - either `INSERT_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
+ Level: intermediate
+
Notes:
If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call MatXXXXSetPreallocation() or
`MatSetUp()` before using this routine
@@ -2331,13 +2345,11 @@
These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
MUST be called after all calls to `MatSetValuesLocal()` have been completed.
- Level: intermediate
-
Developer Note:
This is labeled with C so does not automatically generate Fortran stubs and interfaces
because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
-.seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`,
+.seealso: `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`,
`MatGetValuesLocal()`
@*/
PetscErrorCode MatSetValuesLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], const PetscScalar y[], InsertMode addv)
@@ -2398,11 +2410,15 @@
Input Parameters:
+ x - the matrix
-. nrow, irow - number of rows and their local indices
-. ncol, icol - number of columns and their local indices
+. nrow - number of rows
+. irow - the row local indices
+. ncol - number of columns
+. icol - the column local indices
. y - a logically two-dimensional array of values
- addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
+ Level: intermediate
+
Notes:
If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call MatXXXXSetPreallocation() or
`MatSetUp()` before using this routine
@@ -2417,8 +2433,6 @@
These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
MUST be called after all calls to `MatSetValuesBlockedLocal()` have been completed.
- Level: intermediate
-
Developer Note:
This is labeled with C so does not automatically generate Fortran stubs and interfaces
because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
@@ -2500,12 +2514,12 @@
Output Parameters:
. y - the result
+ Level: developer
+
Note:
- The vectors x and y cannot be the same. I.e., one cannot
+ The vectors `x` and `y` cannot be the same. I.e., one cannot
call `MatMultDiagonalBlock`(A,y,y).
- Level: developer
-
.seealso: `Mat`, `MatMult()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
@*/
PetscErrorCode MatMultDiagonalBlock(Mat mat, Vec x, Vec y)
@@ -2526,7 +2540,6 @@
PetscFunctionReturn(0);
}
-/* --------------------------------------------------------*/
/*@
MatMult - Computes the matrix-vector product, y = Ax.
@@ -2539,12 +2552,12 @@
Output Parameters:
. y - the result
+ Level: beginner
+
Note:
- The vectors x and y cannot be the same. I.e., one cannot
+ The vectors `x` and `y` cannot be the same. I.e., one cannot
call `MatMult`(A,y,y).
- Level: beginner
-
.seealso: `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
@*/
PetscErrorCode MatMult(Mat mat, Vec x, Vec y)
@@ -2586,15 +2599,15 @@
Output Parameters:
. y - the result
+ Level: beginner
+
Notes:
- The vectors x and y cannot be the same. I.e., one cannot
+ The vectors `x` and `y` cannot be the same. I.e., one cannot
call `MatMultTranspose`(A,y,y).
For complex numbers this does NOT compute the Hermitian (complex conjugate) transpose multiple,
use `MatMultHermitianTranspose()`
- Level: beginner
-
.seealso: `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatMultHermitianTranspose()`, `MatTranspose()`
@*/
PetscErrorCode MatMultTranspose(Mat mat, Vec x, Vec y)
@@ -2643,16 +2656,16 @@
Output Parameters:
. y - the result
+ Level: beginner
+
Notes:
- The vectors x and y cannot be the same. I.e., one cannot
+ The vectors `x` and `y` cannot be the same. I.e., one cannot
call `MatMultHermitianTranspose`(A,y,y).
Also called the conjugate transpose, complex conjugate transpose, or adjoint.
For real numbers `MatMultTranspose()` and `MatMultHermitianTranspose()` are identical.
- Level: beginner
-
.seealso: `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultHermitianTransposeAdd()`, `MatMultTranspose()`
@*/
PetscErrorCode MatMultHermitianTranspose(Mat mat, Vec x, Vec y)
@@ -2708,12 +2721,12 @@
Output Parameters:
. v3 - the result
+ Level: beginner
+
Note:
- The vectors v1 and v3 cannot be the same. I.e., one cannot
+ The vectors `v1` and `v3` cannot be the same. I.e., one cannot
call `MatMultAdd`(A,v1,v2,v1).
- Level: beginner
-
.seealso: `Mat`, `MatMultTranspose()`, `MatMult()`, `MatMultTransposeAdd()`
@*/
PetscErrorCode MatMultAdd(Mat mat, Vec v1, Vec v2, Vec v3)
@@ -2756,12 +2769,12 @@
Output Parameters:
. v3 - the result
+ Level: beginner
+
Note:
- The vectors v1 and v3 cannot be the same. I.e., one cannot
+ The vectors `v1` and `v3` cannot be the same. I.e., one cannot
call `MatMultTransposeAdd`(A,v1,v2,v1).
- Level: beginner
-
.seealso: `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()`
@*/
PetscErrorCode MatMultTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3)
@@ -2805,12 +2818,12 @@
Output Parameters:
. v3 - the result
+ Level: beginner
+
Note:
- The vectors v1 and v3 cannot be the same. I.e., one cannot
+ The vectors `v1` and `v3` cannot be the same. I.e., one cannot
call `MatMultHermitianTransposeAdd`(A,v1,v2,v1).
- Level: beginner
-
.seealso: `Mat`, `MatMultHermitianTranspose()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()`
@*/
PetscErrorCode MatMultHermitianTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3)
@@ -2868,7 +2881,7 @@
Level: intermediate
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatSetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatSetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
`MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
@*/
PetscErrorCode MatGetFactorType(Mat mat, MatFactorType *t)
@@ -2892,7 +2905,7 @@
Level: intermediate
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatGetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatGetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
`MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
@*/
PetscErrorCode MatSetFactorType(Mat mat, MatFactorType t)
@@ -2904,21 +2917,18 @@
PetscFunctionReturn(0);
}
-/* ------------------------------------------------------------*/
/*@C
MatGetInfo - Returns information about matrix storage (number of
nonzeros, memory, etc.).
Collective if `MAT_GLOBAL_MAX` or `MAT_GLOBAL_SUM` is used as the flag
- Input Parameter:
-. mat - the matrix
+ Input Parameters:
++ mat - the matrix
+- flag - flag indicating the type of parameters to be returned (`MAT_LOCAL` - local matrix, `MAT_GLOBAL_MAX` - maximum over all processors, `MAT_GLOBAL_SUM` - sum over all processors)
Output Parameters:
-+ flag - flag indicating the type of parameters to be returned
- (`MAT_LOCAL` - local matrix, `MAT_GLOBAL_MAX` - maximum over all processors,
- MAT_GLOBAL_SUM - sum over all processors)
-- info - matrix information context
+. info - matrix information context
Notes:
The `MatInfo` context contains a variety of matrix data, including
@@ -2964,7 +2974,7 @@
Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to MatInfo]
-.seealso: `MatInfo`, `MatStashGetInfo()`
+.seealso: `Mat`, `MatInfo`, `MatStashGetInfo()`
@*/
PetscErrorCode MatGetInfo(Mat mat, MatInfoType flag, MatInfo *info)
{
@@ -2988,8 +2998,6 @@
PetscFunctionReturn(0);
}
-/* ----------------------------------------------------------*/
-
/*@C
MatLUFactor - Performs in-place LU factorization of matrix.
@@ -3000,9 +3008,12 @@
. row - row permutation
. col - column permutation
- info - options for factorization, includes
-$ fill - expected fill as ratio of original fill.
-$ dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
-$ Run with the option -info to determine an optimal value to use
+.vb
+ fill - expected fill as ratio of original fill.
+ dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
+ Run with the option -info to determine an optimal value to use
+.ve
+ Level: developer
Notes:
Most users should employ the `KSP` interface for linear solvers
@@ -3012,11 +3023,9 @@
This changes the state of the matrix to a factored matrix; it cannot be used
for example with `MatSetValues()` unless one first calls `MatSetUnfactored()`.
- This is really in-place only for dense matrices, the prefered approach is to use `MatGetFactor()`, `MatLUFactorSymbolic()`, and `MatLUFactorNumeric()`
+ This is really in-place only for dense matrices, the preferred approach is to use `MatGetFactor()`, `MatLUFactorSymbolic()`, and `MatLUFactorNumeric()`
when not using `KSP`.
- Level: developer
-
Developer Note:
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
@@ -3059,10 +3068,12 @@
. row - row permutation
. col - column permutation
- info - structure containing
-$ levels - number of levels of fill.
-$ expected fill - as ratio of original fill.
-$ 1 or 0 - indicating force fill on diagonal (improves robustness for matrices
+.vb
+ levels - number of levels of fill.
+ expected fill - as ratio of original fill.
+ 1 or 0 - indicating force fill on diagonal (improves robustness for matrices
missing diagonal entries)
+.ve
Level: developer
@@ -3072,14 +3083,14 @@
See, e.g., `KSPCreate()`.
Probably really in-place only when level of fill is zero, otherwise allocates
- new space to store factored matrix and deletes previous memory. The prefered approach is to use `MatGetFactor()`, `MatILUFactorSymbolic()`, and `MatILUFactorNumeric()`
+ new space to store factored matrix and deletes previous memory. The preferred approach is to use `MatGetFactor()`, `MatILUFactorSymbolic()`, and `MatILUFactorNumeric()`
when not using `KSP`.
Developer Note:
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to MatFactorInfo]
-.seealso: [Matrix Factorization](sec_matfactor), `MatILUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatILUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
@*/
PetscErrorCode MatILUFactor(Mat mat, IS row, IS col, const MatFactorInfo *info)
{
@@ -3130,7 +3141,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()`
@*/
PetscErrorCode MatLUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info)
{
@@ -3188,7 +3199,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactorSymbolic()`, `MatLUFactor()`, `MatCholeskyFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactorSymbolic()`, `MatLUFactor()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatLUFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
{
@@ -3245,7 +3256,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactorNumeric()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactorNumeric()`
`MatGetOrdering()`
@*/
PetscErrorCode MatCholeskyFactor(Mat mat, IS perm, const MatFactorInfo *info)
@@ -3304,7 +3315,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactor()`, `MatCholeskyFactorNumeric()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactor()`, `MatCholeskyFactorNumeric()`
`MatGetOrdering()`
@*/
PetscErrorCode MatCholeskyFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info)
@@ -3362,7 +3373,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactor()`, `MatLUFactorNumeric()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactor()`, `MatLUFactorNumeric()`
@*/
PetscErrorCode MatCholeskyFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
{
@@ -3422,7 +3433,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to MatFactorInfo]
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactorSymbolic()`, `MatQRFactorNumeric()`, `MatLUFactor()`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactorSymbolic()`, `MatQRFactorNumeric()`, `MatLUFactor()`,
`MatSetUnfactored()`, `MatFactorInfo`, `MatGetFactor()`
@*/
PetscErrorCode MatQRFactor(Mat mat, IS col, const MatFactorInfo *info)
@@ -3470,7 +3481,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatQRFactor()`, `MatQRFactorNumeric()`, `MatLUFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatQRFactor()`, `MatQRFactorNumeric()`, `MatLUFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()`
@*/
PetscErrorCode MatQRFactorSymbolic(Mat fact, Mat mat, IS col, const MatFactorInfo *info)
{
@@ -3521,7 +3532,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactor()`, `MatQRFactorSymbolic()`, `MatLUFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactor()`, `MatQRFactorSymbolic()`, `MatLUFactor()`
@*/
PetscErrorCode MatQRFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
{
@@ -3552,7 +3563,6 @@
PetscFunctionReturn(0);
}
-/* ----------------------------------------------------------------*/
/*@
MatSolve - Solves A x = b, given a factored matrix.
@@ -3565,17 +3575,17 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Notes:
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatSolve`(A,x,x).
Most users should employ the `KSP` interface for linear solvers
instead of working directly with matrix algebra routines such as this.
See, e.g., `KSPCreate()`.
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
@*/
PetscErrorCode MatSolve(Mat mat, Vec b, Vec x)
{
@@ -3646,7 +3656,7 @@
/*@
MatMatSolve - Solves A X = B, given a factored matrix.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the factored matrix
@@ -3655,13 +3665,13 @@
Output Parameter:
. X - the result matrix (dense matrix)
- Note:
- If B is a `MATDENSE` matrix then one can call `MatMatSolve`(A,B,B) except with MKL_CPARDISO;
- otherwise, B and X cannot be the same.
-
Level: developer
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
+ Note:
+ If `B` is a `MATDENSE` matrix then one can call `MatMatSolve`(A,B,B) except with `MATSOLVERMKL_CPARDISO`;
+ otherwise, `B` and `X` cannot be the same.
+
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatMatSolve(Mat A, Mat B, Mat X)
{
@@ -3692,7 +3702,7 @@
/*@
MatMatSolveTranspose - Solves A^T X = B, given a factored matrix.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the factored matrix
@@ -3701,13 +3711,13 @@
Output Parameter:
. X - the result matrix (dense matrix)
+ Level: developer
+
Note:
- The matrices B and X cannot be the same. I.e., one cannot
+ The matrices `B` and `X` cannot be the same. I.e., one cannot
call `MatMatSolveTranspose`(A,X,X).
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolveTranspose()`, `MatMatSolve()`, `MatLUFactor()`, `MatCholeskyFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolveTranspose()`, `MatMatSolve()`, `MatLUFactor()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatMatSolveTranspose(Mat A, Mat B, Mat X)
{
@@ -3740,7 +3750,7 @@
/*@
MatMatTransposeSolve - Solves A X = B^T, given a factored matrix.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the factored matrix
@@ -3749,13 +3759,13 @@
Output Parameter:
. X - the result matrix (dense matrix)
+ Level: developer
+
Note:
For MUMPS, it only supports centralized sparse compressed column format on the host processor for right hand side matrix. User must create B^T in sparse compressed row
format on the host processor and call `MatMatTransposeSolve()` to implement MUMPS' `MatMatSolve()`.
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatMatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatMatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatMatTransposeSolve(Mat A, Mat Bt, Mat X)
{
@@ -3795,11 +3805,13 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Notes:
`MatSolve()` should be used for most applications, as it performs
a forward solve followed by a backward solve.
- The vectors b and x cannot be the same, i.e., one cannot
+ The vectors `b` and `x` cannot be the same, i.e., one cannot
call `MatForwardSolve`(A,x,x).
For matrix in `MATSEQBAIJ` format with block size larger than 1,
@@ -3808,9 +3820,7 @@
`MatBackwardSolve()` solves U x = y.
Thus they do not provide a symmetric preconditioner.
- Level: developer
-
-.seealso: `MatBackwardSolve()`, `MatGetFactor()`, `MatSolve()`, `MatBackwardSolve()`
+.seealso: `Mat`, `MatBackwardSolve()`, `MatGetFactor()`, `MatSolve()`, `MatBackwardSolve()`
@*/
PetscErrorCode MatForwardSolve(Mat mat, Vec b, Vec x)
{
@@ -3848,11 +3858,13 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Notes:
`MatSolve()` should be used for most applications, as it performs
a forward solve followed by a backward solve.
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatBackwardSolve`(A,x,x).
For matrix in `MATSEQBAIJ` format with block size larger than 1,
@@ -3861,9 +3873,7 @@
`MatBackwardSolve()` solves U x = y.
Thus they do not provide a symmetric preconditioner.
- Level: developer
-
-.seealso: `MatForwardSolve()`, `MatGetFactor()`, `MatSolve()`, `MatForwardSolve()`
+.seealso: `Mat`, `MatForwardSolve()`, `MatGetFactor()`, `MatSolve()`, `MatForwardSolve()`
@*/
PetscErrorCode MatBackwardSolve(Mat mat, Vec b, Vec x)
{
@@ -3901,13 +3911,13 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Note:
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatSolveAdd`(A,x,y,x).
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatSolve()`, `MatGetFactor()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatSolve()`, `MatGetFactor()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
@*/
PetscErrorCode MatSolveAdd(Mat mat, Vec b, Vec y, Vec x)
{
@@ -3968,17 +3978,17 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Notes:
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatSolveTranspose`(A,x,x).
Most users should employ the `KSP` interface for linear solvers
instead of working directly with matrix algebra routines such as this.
See, e.g., `KSPCreate()`.
- Level: developer
-
-.seealso: `MatGetFactor()`, `KSP`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTransposeAdd()`
+.seealso: `Mat`, `MatGetFactor()`, `KSP`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTransposeAdd()`
@*/
PetscErrorCode MatSolveTranspose(Mat mat, Vec b, Vec x)
{
@@ -4023,13 +4033,13 @@
Output Parameter:
. x - the result vector
+ Level: developer
+
Note:
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatSolveTransposeAdd`(A,x,y,x).
- Level: developer
-
-.seealso: `MatGetFactor()`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTranspose()`
+.seealso: `Mat`, `MatGetFactor()`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTranspose()`
@*/
PetscErrorCode MatSolveTransposeAdd(Mat mat, Vec b, Vec y, Vec x)
{
@@ -4077,7 +4087,6 @@
PetscCall(PetscObjectStateIncrease((PetscObject)x));
PetscFunctionReturn(0);
}
-/* ----------------------------------------------------------------*/
/*@
MatSOR - Computes relaxation (SOR, Gauss-Seidel) sweeps.
@@ -4109,6 +4118,8 @@
vector (with omega)
- `SOR_ZERO_INITIAL_GUESS` - zero initial guess
+ Level: developer
+
Notes:
`SOR_LOCAL_FORWARD_SWEEP`, `SOR_LOCAL_BACKWARD_SWEEP`, and
`SOR_LOCAL_SYMMETRIC_SWEEP` perform separate independent smoothings
@@ -4123,7 +4134,7 @@
instead of working directly with matrix algebra routines such as this.
See, e.g., `KSPCreate()`.
- Vectors x and b CANNOT be the same
+ Vectors `x` and `b` CANNOT be the same
Notes for Advanced Users:
The flags are implemented as bitwise inclusive or operations.
@@ -4133,8 +4144,6 @@
Developer Note:
We should add block SOR support for `MATAIJ` matrices with block size set to great than one and no inodes
- Level: developer
-
.seealso: `Mat`, `MatMult()`, `KSP`, `PC`, `MatGetFactor()`
@*/
PetscErrorCode MatSOR(Mat mat, Vec b, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec x)
@@ -4192,7 +4201,7 @@
/*@
MatCopy - Copies a matrix to another matrix.
- Collective on A
+ Collective
Input Parameters:
+ A - the matrix
@@ -4201,6 +4210,8 @@
Output Parameter:
. B - where the copy is put
+ Level: intermediate
+
Notes:
If you use `SAME_NONZERO_PATTERN `then the two matrices must have the same nonzero pattern or the routine will crash.
@@ -4208,8 +4219,6 @@
matrix (after first zeroing the second matrix). A related routine is
`MatConvert()`, which first creates a new matrix and then copies the data.
- Level: intermediate
-
.seealso: `Mat`, `MatConvert()`, `MatDuplicate()`
@*/
PetscErrorCode MatCopy(Mat A, Mat B, MatStructure str)
@@ -4263,6 +4272,8 @@
Output Parameter:
. M - pointer to place new matrix
+ Level: intermediate
+
Notes:
`MatConvert()` first creates a new matrix and then copies the data from
the first matrix. A related routine is `MatCopy()`, which copies the matrix
@@ -4272,8 +4283,6 @@
the MPI communicator of the generated matrix is always the same as the communicator
of the input matrix.
- Level: intermediate
-
.seealso: `Mat`, `MatCopy()`, `MatDuplicate()`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
@*/
PetscErrorCode MatConvert(Mat mat, MatType newtype, MatReuse reuse, Mat *M)
@@ -4438,11 +4447,10 @@
Level: intermediate
- Note:
- In Fortran you pass in a empty string and the package name will be copied into it.
- (Make sure the string is long enough)
+ Fortran Note:
+ Pass in an empty string and the package name will be copied into it. Make sure the string is long enough.
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolverType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolverType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`
@*/
PetscErrorCode MatFactorGetSolverType(Mat mat, MatSolverType *type)
{
@@ -4487,7 +4495,7 @@
Level: developer
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorGetSolverType()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorGetSolverType()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`
@*/
PetscErrorCode MatSolverTypeRegister(MatSolverType package, MatType mtype, MatFactorType ftype, PetscErrorCode (*createfactor)(Mat, MatFactorType, Mat *))
{
@@ -4546,11 +4554,11 @@
Output Parameters:
+ foundtype - `PETSC_TRUE` if the type was registered
. foundmtype - `PETSC_TRUE` if the type supports the requested mtype
-- createfactor - routine that will create the factored matrix ready to be used or NULL if not found
+- createfactor - routine that will create the factored matrix ready to be used or `NULL` if not found
Level: developer
-.seealso: `MatFactorType`, `MatType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`, `MatGetFactor()`
+.seealso: `Mat`, `MatFactorType`, `MatType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`, `MatGetFactor()`
@*/
PetscErrorCode MatSolverTypeGet(MatSolverType type, MatType mtype, MatFactorType ftype, PetscBool *foundtype, PetscBool *foundmtype, PetscErrorCode (**createfactor)(Mat, MatFactorType, Mat *))
{
@@ -4650,13 +4658,13 @@
Output Parameters:
. flg - `PETSC_TRUE` if uses the ordering
+ Level: developer
+
Note:
Most internal PETSc factorizations use the ordering passed to the factorization routine but external
packages do not, thus we want to skip generating the ordering when it is not needed or used.
- Level: developer
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
@*/
PetscErrorCode MatFactorGetCanUseOrdering(Mat mat, PetscBool *flg)
{
@@ -4678,7 +4686,7 @@
Level: developer
-.seealso: [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatOrderingType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatOrderingType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
@*/
PetscErrorCode MatFactorGetPreferredOrdering(Mat mat, MatFactorType ftype, MatOrderingType *otype)
{
@@ -4705,6 +4713,8 @@
. -mat_factor_bind_factorization <host, device> - Where to do matrix factorization? Default is device (might consume more device memory.
One can choose host to save device memory). Currently only supported with `MATSEQAIJCUSPARSE` matrices.
+ Level: intermediate
+
Notes:
Users usually access the factorization solvers via `KSP`
@@ -4720,9 +4730,7 @@
Developer Note:
This should actually be called `MatCreateFactor()` since it creates a new factor object
- Level: intermediate
-
-.seealso: [Matrix Factorization](sec_matfactor), `KSP`, `MatSolverType`, `MatFactorType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatFactorGetCanUseOrdering()`, `MatSolverTypeRegister()`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `KSP`, `MatSolverType`, `MatFactorType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatFactorGetCanUseOrdering()`, `MatSolverTypeRegister()`,
`MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
@*/
PetscErrorCode MatGetFactor(Mat mat, MatSolverType type, MatFactorType ftype, Mat *f)
@@ -4767,6 +4775,8 @@
Output Parameter:
. flg - PETSC_TRUE if the factorization is available
+ Level: intermediate
+
Notes:
Some PETSc matrix formats have alternative solvers available that are contained in alternative packages
such as pastix, superlu, mumps etc.
@@ -4776,9 +4786,7 @@
Developer Note:
This should actually be called MatCreateFactorAvailable() since MatGetFactor() creates a new factor object
- Level: intermediate
-
-.seealso: [Matrix Factorization](sec_matfactor), `MatSolverType`, `MatFactorType`, `MatGetFactor()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactor()`, `MatSolverTypeRegister()`,
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatSolverType`, `MatFactorType`, `MatGetFactor()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactor()`, `MatSolverTypeRegister()`,
`MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
@*/
PetscErrorCode MatGetFactorAvailable(Mat mat, MatSolverType type, MatFactorType ftype, PetscBool *flg)
@@ -4822,7 +4830,7 @@
is duplicated and the internal data structures created for the reuse of previous matrix operations are not duplicated.
User should not use `MatDuplicate()` to create new matrix M if M is intended to be reused as the product of matrix operation.
-.seealso: `MatCopy()`, `MatConvert()`, `MatDuplicateOption`
+.seealso: `Mat`, `MatCopy()`, `MatConvert()`, `MatDuplicateOption`
@*/
PetscErrorCode MatDuplicate(Mat mat, MatDuplicateOption op, Mat *M)
{
@@ -4921,7 +4929,7 @@
This code is only implemented for a couple of matrix formats.
-.seealso: `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`,
+.seealso: `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`,
`MatGetRowMax()`
@*/
PetscErrorCode MatGetRowMin(Mat mat, Vec v, PetscInt idx[])
@@ -4957,7 +4965,7 @@
Output Parameters:
+ v - the vector for storing the minimums
-- idx - the indices of the column found for each row (or NULL if not needed)
+- idx - the indices of the column found for each row (or `NULL` if not needed)
Level: intermediate
@@ -4967,7 +4975,7 @@
This code is only implemented for a couple of matrix formats.
-.seealso: `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`
+.seealso: `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`
@*/
PetscErrorCode MatGetRowMinAbs(Mat mat, Vec v, PetscInt idx[])
{
@@ -5014,7 +5022,7 @@
This code is only implemented for a couple of matrix formats.
-.seealso: `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
+.seealso: `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
@*/
PetscErrorCode MatGetRowMax(Mat mat, Vec v, PetscInt idx[])
{
@@ -5049,7 +5057,7 @@
Output Parameters:
+ v - the vector for storing the maximums
-- idx - the indices of the column found for each row (or NULL if not needed)
+- idx - the indices of the column found for each row (or `NULL` if not needed)
Level: intermediate
@@ -5059,7 +5067,7 @@
This code is only implemented for a couple of matrix formats.
-.seealso: `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
+.seealso: `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
@*/
PetscErrorCode MatGetRowMaxAbs(Mat mat, Vec v, PetscInt idx[])
{
@@ -5100,7 +5108,7 @@
Notes:
This code is slow since it is not currently specialized for different formats
-.seealso: `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`
+.seealso: `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`
@*/
PetscErrorCode MatGetRowSum(Mat mat, Vec v)
{
@@ -5137,7 +5145,7 @@
Normally he use of `MatTranspose`(A,`MAT_REUSE_MATRIX`,&B) requires that B was obtained with a call to `MatTranspose`(A,`MAT_INITIAL_MATRIX`,&B). This
routine allows bypassing that call.
-.seealso: `MatTransposeSymbolic()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
+.seealso: `Mat`, `MatTransposeSymbolic()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
@*/
PetscErrorCode MatTransposeSetPrecursor(Mat mat, Mat B)
{
@@ -5169,6 +5177,8 @@
Output Parameter:
. B - the transpose
+ Level: intermediate
+
Notes:
If you use `MAT_INPLACE_MATRIX` then you must pass in &mat for B
@@ -5183,9 +5193,7 @@
If you only need the symbolic transpose, and not the numerical values, use `MatTransposeSymbolic()`
- Level: intermediate
-
-.seealso: `MatTransposeSetPrecursor()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`,
+.seealso: `Mat`, `MatTransposeSetPrecursor()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`,
`MatTransposeSymbolic()`
@*/
PetscErrorCode MatTranspose(Mat mat, MatReuse reuse, Mat *B)
@@ -5229,7 +5237,7 @@
/*@
MatTransposeSymbolic - Computes the symbolic part of the transpose of a matrix.
- Collective on A
+ Collective
Input Parameters:
. A - the matrix to transpose
@@ -5243,7 +5251,7 @@
Note:
This is not supported for many matrix types, use `MatTranspose()` in those cases
-.seealso: `MatTransposeSetPrecursor()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
+.seealso: `Mat`, `MatTransposeSetPrecursor()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
@*/
PetscErrorCode MatTransposeSymbolic(Mat A, Mat *B)
{
@@ -5283,7 +5291,7 @@
MatIsTranspose - Test whether a matrix is another one's transpose,
or its own, in which case it tests symmetry.
- Collective on A
+ Collective
Input Parameters:
+ A - the matrix to test
@@ -5292,15 +5300,15 @@
Output Parameters:
. flg - the result
+ Level: intermediate
+
Notes:
Only available for `MATAIJ` matrices.
The sequential algorithm has a running time of the order of the number of nonzeros; the parallel
test involves parallel copies of the block-offdiagonal parts of the matrix.
- Level: intermediate
-
-.seealso: `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`
+.seealso: `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`
@*/
PetscErrorCode MatIsTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg)
{
@@ -5339,7 +5347,7 @@
Level: intermediate
-.seealso: `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`
+.seealso: `Mat`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`
@*/
PetscErrorCode MatHermitianTranspose(Mat mat, MatReuse reuse, Mat *B)
{
@@ -5354,7 +5362,7 @@
/*@
MatIsHermitianTranspose - Test whether a matrix is another one's Hermitian transpose,
- Collective on A
+ Collective
Input Parameters:
+ A - the matrix to test
@@ -5363,6 +5371,8 @@
Output Parameters:
. flg - the result
+ Level: intermediate
+
Notes:
Only available for `MATAIJ` matrices.
@@ -5370,9 +5380,7 @@
has a running time of the order of the number of nonzeros; the parallel
test involves parallel copies of the block-offdiagonal parts of the matrix.
- Level: intermediate
-
-.seealso: `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsTranspose()`
+.seealso: `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsTranspose()`
@*/
PetscErrorCode MatIsHermitianTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg)
{
@@ -5416,7 +5424,7 @@
exploit the fact that row and col are permutations, consider implementing the
more general `MatCreateSubMatrix()` instead.
-.seealso: `MatGetOrdering()`, `ISAllGather()`, `MatCreateSubMatrix()`
+.seealso: `Mat`, `MatGetOrdering()`, `ISAllGather()`, `MatCreateSubMatrix()`
@*/
PetscErrorCode MatPermute(Mat mat, IS row, IS col, Mat *B)
{
@@ -5445,7 +5453,7 @@
/*@
MatEqual - Compares two matrices.
- Collective on A
+ Collective
Input Parameters:
+ A - the first matrix
@@ -5484,22 +5492,22 @@
/*@
MatDiagonalScale - Scales a matrix on the left and right by diagonal
matrices that are stored as vectors. Either of the two scaling
- matrices can be NULL.
+ matrices can be `NULL`.
Collective
Input Parameters:
+ mat - the matrix to be scaled
-. l - the left scaling vector (or NULL)
-- r - the right scaling vector (or NULL)
+. l - the left scaling vector (or `NULL`)
+- r - the right scaling vector (or `NULL`)
+
+ Level: intermediate
Note:
`MatDiagonalScale()` computes A = LAR, where
L = a diagonal matrix (stored as a vector), R = a diagonal matrix (stored as a vector)
The L scales the rows of the matrix, the R scales the columns of the matrix.
- Level: intermediate
-
.seealso: `Mat`, `MatScale()`, `MatShift()`, `MatDiagonalSet()`
@*/
PetscErrorCode MatDiagonalScale(Mat mat, Vec l, Vec r)
@@ -5610,6 +5618,8 @@
+ mat - the matrix
- type - type of assembly, either `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY`
+ Level: beginner
+
Notes:
`MatSetValues()` generally caches the values that belong to other MPI ranks. The matrix is ready to
use only after `MatAssemblyBegin()` and `MatAssemblyEnd()` have been called.
@@ -5626,8 +5636,6 @@
out by assembly. If you intend to use that extra space on a subsequent assembly, be sure to insert explicit zeros
before `MAT_FINAL_ASSEMBLY` so the space is not compressed out.
- Level: beginner
-
.seealso: `Mat`, `MatAssemblyEnd()`, `MatSetValues()`, `MatAssembled()`
@*/
PetscErrorCode MatAssemblyBegin(Mat mat, MatAssemblyType type)
@@ -5802,6 +5810,8 @@
of the off-process entries required for all subsequent assemblies. This avoids a rendezvous step in the MatAssembly
functions, instead sending only neighbor messages.
+ Level: intermediate
+
Notes:
Except for `MAT_UNUSED_NONZERO_LOCATION_ERR` and `MAT_ROW_ORIENTED` all processes that share the matrix must pass the same value in flg!
@@ -5815,7 +5825,7 @@
`MAT_NEW_NONZERO_LOCATIONS` set to `PETSC_FALSE` indicates that any add or insertion
that would generate a new entry in the nonzero structure is instead
- ignored. Thus, if memory has not alredy been allocated for this particular
+ ignored. Thus, if memory has not already been allocated for this particular
data, then the insertion is ignored. For dense matrices, in which
the entire array is allocated, no entries are ever ignored.
Set after the first `MatAssemblyEnd()`. If this option is set then the MatAssemblyBegin/End() processes has one less global reduction
@@ -5839,10 +5849,10 @@
`MAT_USE_HASH_TABLE` indicates that a hash table be used to improve the
searches during matrix assembly. When this flag is set, the hash table
is created during the first matrix assembly. This hash table is
- used the next time through, during `MatSetVaules()`/`MatSetVaulesBlocked()`
+ used the next time through, during `MatSetValues()`/`MatSetValuesBlocked()`
to improve the searching of indices. `MAT_NEW_NONZERO_LOCATIONS` flag
should be used with `MAT_USE_HASH_TABLE` flag. This option is currently
- supported by` MATMPIBAIJ` format only.
+ supported by `MATMPIBAIJ` format only.
`MAT_KEEP_NONZERO_PATTERN` indicates when `MatZeroRows()` is called the zeroed entries
are kept in the nonzero structure
@@ -5868,8 +5878,6 @@
to `PETSC_BOOL3_UNKNOWN` because the matrix values had changed so the code cannot be certain that the related property had
not changed.
- Level: intermediate
-
.seealso: `MatOption`, `Mat`, `MatGetOption()`
@*/
PetscErrorCode MatSetOption(Mat mat, MatOption op, PetscBool flg)
@@ -5970,15 +5978,15 @@
Output Parameter:
. flg - turn the option on (`PETSC_TRUE`) or off (`PETSC_FALSE`)
+ Level: intermediate
+
Notes:
Can only be called after `MatSetSizes()` and `MatSetType()` have been set.
Certain option values may be unknown, for those use the routines `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, or
`MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()`
- Level: intermediate
-
-.seealso: `MatOption`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`,
+.seealso: `Mat`, `MatOption`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`,
`MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()`
@*/
PetscErrorCode MatGetOption(Mat mat, MatOption op, PetscBool *flg)
@@ -6062,17 +6070,19 @@
Input Parameters:
+ mat - the matrix
-. numRows - the number of rows to remove
+. numRows - the number of rows/columns to zero
. rows - the global row indices
. diag - value put in the diagonal of the eliminated rows
-. x - optional vector of solutions for zeroed rows (other entries in vector are not used), these must be set before this call
-- b - optional vector of right hand side, that will be adjusted by provided solution
+. x - optional vector of the solution for zeroed rows (other entries in vector are not used), these must be set before this call
+- b - optional vector of the right hand side, that will be adjusted by provided solution entries
+
+ Level: intermediate
Notes:
This routine, along with `MatZeroRows()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system.
- For each zeroed row, the value of the corresponding b is set to diag times the value of the corresponding x.
- The other entries of b will be adjusted by the known values of x times the corresponding matrix entries in the columns that are being eliminated
+ For each zeroed row, the value of the corresponding `b` is set to diag times the value of the corresponding `x`.
+ The other entries of `b` will be adjusted by the known values of `x` times the corresponding matrix entries in the columns that are being eliminated
If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the
Krylov method to take advantage of the known solution on the zeroed rows.
@@ -6089,9 +6099,7 @@
The option `MAT_NO_OFF_PROC_ZERO_ROWS` does not apply to this routine.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRows()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRows()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsColumns(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
@@ -6123,12 +6131,12 @@
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Note:
See `MatZeroRowsColumns()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRows()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsColumnsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
@@ -6156,21 +6164,23 @@
Input Parameters:
+ mat - the matrix
-. numRows - the number of rows to remove
+. numRows - the number of rows to zero
. rows - the global row indices
-. diag - value put in the diagonal of the eliminated rows
+. diag - value put in the diagonal of the zeroed rows
. x - optional vector of solutions for zeroed rows (other entries in vector are not used), these must be set before this call
-- b - optional vector of right hand side, that will be adjusted by provided solution
+- b - optional vector of right hand side, that will be adjusted by provided solution entries
+
+ Level: intermediate
Notes:
This routine, along with `MatZeroRowsColumns()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system.
- For each zeroed row, the value of the corresponding b is set to diag times the value of the corresponding x.
+ For each zeroed row, the value of the corresponding `b` is set to `diag` times the value of the corresponding `x`.
If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the
Krylov method to take advantage of the known solution on the zeroed rows.
- May be followed by using a `PC` of type `PCREDISTRIBUTE` to solve the reducing problem (after completely eliminating the zeroed rows and their corresponding columns)
+ May be followed by using a `PC` of type `PCREDISTRIBUTE` to solve the reduced problem (`PCDISTRIBUTE` completely eliminates the zeroed rows and their corresponding columns)
from the matrix.
Unlike `MatZeroRowsColumns()` for the `MATAIJ` and `MATBAIJ` matrix formats this removes the old nonzero structure, from the eliminated rows of the matrix
@@ -6196,8 +6206,6 @@
You can call `MatSetOption`(mat,`MAT_NO_OFF_PROC_ZERO_ROWS`,`PETSC_TRUE`) if each process indicates only rows it
owns that are to be zeroed. This saves a global synchronization in the implementation.
- Level: intermediate
-
.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`, `PCREDISTRIBUTE`
@*/
@@ -6225,17 +6233,17 @@
Input Parameters:
+ mat - the matrix
-. is - index set of rows to remove (if NULL then no row is removed)
+. is - index set of rows to remove (if `NULL` then no row is removed)
. diag - value put in all diagonals of eliminated rows
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Note:
See `MatZeroRows()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRows()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRows()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
@@ -6297,7 +6305,7 @@
etc
.ve
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsl()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsl()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b)
@@ -6378,7 +6386,7 @@
etc
.ve
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRows()`
@*/
PetscErrorCode MatZeroRowsColumnsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b)
@@ -6432,15 +6440,15 @@
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Notes:
Before calling `MatZeroRowsLocal()`, the user must first set the
local-to-global mapping by calling MatSetLocalToGlobalMapping(), this is often already set for matrices obtained with `DMCreateMatrix()`.
See `MatZeroRows()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRows()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRows()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
@@ -6485,15 +6493,15 @@
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Notes:
Before calling `MatZeroRowsLocalIS()`, the user must first set the
local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
See `MatZeroRows()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRows()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRows()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
@@ -6530,15 +6538,15 @@
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Notes:
Before calling `MatZeroRowsColumnsLocal()`, the user must first set the
local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
See `MatZeroRowsColumns()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRows()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsColumnsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
@@ -6579,15 +6587,15 @@
. x - optional vector of solutions for zeroed rows (other entries in vector are not used)
- b - optional vector of right hand side, that will be adjusted by provided solution
+ Level: intermediate
+
Notes:
Before calling `MatZeroRowsColumnsLocalIS()`, the user must first set the
local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
See `MatZeroRowsColumns()` for details on how this routine operates.
- Level: intermediate
-
-.seealso: `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
+.seealso: `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
`MatZeroRowsColumnsLocal()`, `MatZeroRows()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
@*/
PetscErrorCode MatZeroRowsColumnsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
@@ -6618,13 +6626,14 @@
Input Parameter:
. mat - the matrix
+ Level: beginner
+
Output Parameters:
+ m - the number of global rows
- n - the number of global columns
- Note: both output parameters can be NULL on input.
-
- Level: beginner
+ Note:
+ Both output parameters can be `NULL` on input.
.seealso: `Mat`, `MatSetSizes()`, `MatGetLocalSize()`
@*/
@@ -6709,14 +6718,14 @@
+ m - the global index of the first local row, use `NULL` to not obtain this value
- n - one more than the global index of the last local row, use `NULL` to not obtain this value
+ Level: beginner
+
Note:
This function requires that the matrix be preallocated. If you have not preallocated, consider using
`PetscSplitOwnership`(`MPI_Comm` comm, `PetscInt` *n, `PetscInt` *N)
and then `MPI_Scan()` to calculate prefix sums of the local sizes.
- Level: beginner
-
-.seealso: `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscSplitOwnership()`, `PetscSplitOwnershipBlock()`,
+.seealso: `Mat`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscSplitOwnership()`, `PetscSplitOwnershipBlock()`,
`PetscLayout`
@*/
PetscErrorCode MatGetOwnershipRange(Mat mat, PetscInt *m, PetscInt *n)
@@ -6801,7 +6810,7 @@
Level: intermediate
-.seealso: `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatSetValues()`, ``MATELEMENTAL``, ``MATSCALAPACK``
+.seealso: `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatSetValues()`, ``MATELEMENTAL``, ``MATSCALAPACK``
@*/
PetscErrorCode MatGetOwnershipIS(Mat A, IS *rows, IS *cols)
{
@@ -6832,10 +6841,12 @@
. row - row permutation
. column - column permutation
- info - structure containing
-$ levels - number of levels of fill.
-$ expected fill - as ratio of original fill.
-$ 1 or 0 - indicating force fill on diagonal (improves robustness for matrices
+.vb
+ levels - number of levels of fill.
+ expected fill - as ratio of original fill.
+ 1 or 0 - indicating force fill on diagonal (improves robustness for matrices
missing diagonal entries)
+.ve
Output Parameters:
. fact - new matrix that has been symbolically factored
@@ -6858,7 +6869,7 @@
References:
. * - Y. Saad, Iterative methods for sparse linear systems Philadelphia: Society for Industrial and Applied Mathematics, 2003
-.seealso: [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
+.seealso: `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
`MatGetOrdering()`, `MatFactorInfo`
@*/
PetscErrorCode MatILUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info)
@@ -6899,8 +6910,10 @@
. mat - the matrix to be factored
. perm - row and column permutation
- info - structure containing
-$ levels - number of levels of fill.
-$ expected fill - as ratio of original fill.
+.vb
+ levels - number of levels of fill.
+ expected fill - as ratio of original fill.
+.ve
Output Parameter:
. fact - the factored matrix
@@ -6921,7 +6934,7 @@
References:
. * - Y. Saad, Iterative methods for sparse linear systems Philadelphia: Society for Industrial and Applied Mathematics, 2003
-.seealso: `MatGetFactor()`, `MatCholeskyFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
+.seealso: `Mat`, `MatGetFactor()`, `MatCholeskyFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
@*/
PetscErrorCode MatICCFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info)
{
@@ -6964,6 +6977,8 @@
Output Parameter:
. submat - the array of submatrices
+ Level: advanced
+
Notes:
`MatCreateSubMatrices()` can extract ONLY sequential submatrices
(from both sequential and parallel matrices). Use `MatCreateSubMatrix()`
@@ -6996,8 +7011,6 @@
The Fortran interface is slightly different from that given below; it
requires one to pass in as submat a `Mat` (integer) array of size at least n+1.
- Level: advanced
-
.seealso: `Mat`, `MatDestroySubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse`
@*/
PetscErrorCode MatCreateSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
@@ -7058,7 +7071,7 @@
Note:
This is used by `PCGASM`
-.seealso: `PCGASM`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse`
+.seealso: `Mat`, `PCGASM`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse`
@*/
PetscErrorCode MatCreateSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
{
@@ -7106,7 +7119,9 @@
Note:
Frees not only the matrices, but also the array that contains the matrices
- In Fortran will not free the array.
+
+ Fortran Note:
+ Will not free the array.
.seealso: `Mat`, `MatCreateSubMatrices()` `MatDestroySubMatrices()`
@*/
@@ -7140,9 +7155,11 @@
Note:
Frees not only the matrices, but also the array that contains the matrices
- In Fortran will not free the array.
-.seealso: `MatCreateSubMatrices()`, `MatDestroyMatrices()`
+ Fortran Note:
+ Will not free the array.
+
+.seealso: `Mat`, `MatCreateSubMatrices()`, `MatDestroyMatrices()`
@*/
PetscErrorCode MatDestroySubMatrices(PetscInt n, Mat *mat[])
{
@@ -7291,7 +7308,7 @@
Level: developer
-.seealso: `MatCreateSubMatrices()`, `MatIncreaseOverlap()`
+.seealso: `Mat`, `MatCreateSubMatrices()`, `MatIncreaseOverlap()`
@*/
PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov)
{
@@ -7326,14 +7343,14 @@
Output Parameter:
. bs - block size
+ Level: intermediate
+
Notes:
Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix.
If the block size has not been set yet this routine returns 1.
- Level: intermediate
-
-.seealso: `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSizes()`
+.seealso: `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSizes()`
@*/
PetscErrorCode MatGetBlockSize(Mat mat, PetscInt *bs)
{
@@ -7356,15 +7373,15 @@
+ rbs - row block size
- cbs - column block size
+ Level: intermediate
+
Notes:
Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix.
If you pass a different block size for the columns than the rows, the row block size determines the square block storage.
If a block size has not been set yet this routine returns 1.
- Level: intermediate
-
-.seealso: `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatSetBlockSizes()`
+.seealso: `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatSetBlockSizes()`
@*/
PetscErrorCode MatGetBlockSizes(Mat mat, PetscInt *rbs, PetscInt *cbs)
{
@@ -7386,6 +7403,8 @@
+ mat - the matrix
- bs - block size
+ Level: intermediate
+
Notes:
Block row formats are `MATBAIJ` and `MATSBAIJ` formats ALWAYS have square block storage in the matrix.
This must be called before `MatSetUp()` or MatXXXSetPreallocation() (or will default to 1) and the block size cannot be changed later.
@@ -7393,9 +7412,7 @@
For `MATAIJ` matrix format, this function can be called at a later stage, provided that the specified block size
is compatible with the matrix local sizes.
- Level: intermediate
-
-.seealso: `MATBAIJ`, `MATSBAIJ`, `MATAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`
+.seealso: `Mat`, `MATBAIJ`, `MATSBAIJ`, `MATAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`
@*/
PetscErrorCode MatSetBlockSize(Mat mat, PetscInt bs)
{
@@ -7582,7 +7599,7 @@
/*@
MatInvertVariableBlockEnvelope - set matrix C to be the inverted block diagonal of matrix A
- Collective on A
+ Collective
Input Parameters:
. A - the matrix
@@ -7590,12 +7607,12 @@
Output Parameters:
. C - matrix with inverted block diagonal of A. This matrix should be created and may have its type set.
+ Level: advanced
+
Note:
For efficiency the matrix A should have all the nonzero entries clustered in smallish blocks along the diagonal.
- Level: advanced
-
-.seealso: `MatInvertBlockDiagonal()`, `MatComputeBlockDiagonal()`
+.seealso: `Mat`, `MatInvertBlockDiagonal()`, `MatComputeBlockDiagonal()`
@*/
PetscErrorCode MatInvertVariableBlockEnvelope(Mat A, MatReuse reuse, Mat *C)
{
@@ -7644,14 +7661,14 @@
. nblocks - the number of blocks on this process, each block can only exist on a single process
- bsizes - the block sizes
+ Level: intermediate
+
Notes:
Currently used by `PCVPBJACOBI` for `MATAIJ` matrices
Each variable point-block set of degrees of freedom must live on a single MPI rank. That is a point block cannot straddle two MPI ranks.
- Level: intermediate
-
-.seealso: `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatGetVariableBlockSizes()`,
+.seealso: `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatGetVariableBlockSizes()`,
`MatComputeVariableBlockEnvelope()`, `PCVPBJACOBI`
@*/
PetscErrorCode MatSetVariableBlockSizes(Mat mat, PetscInt nblocks, PetscInt *bsizes)
@@ -7685,7 +7702,7 @@
Level: intermediate
-.seealso: `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatSetVariableBlockSizes()`, `MatComputeVariableBlockEnvelope()`
+.seealso: `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatSetVariableBlockSizes()`, `MatComputeVariableBlockEnvelope()`
@*/
PetscErrorCode MatGetVariableBlockSizes(Mat mat, PetscInt *nblocks, const PetscInt **bsizes)
{
@@ -7706,6 +7723,8 @@
. rbs - row block size
- cbs - column block size
+ Level: intermediate
+
Notes:
Block row formats are `MATBAIJ` and `MATSBAIJ`. These formats ALWAYS have square block storage in the matrix.
If you pass a different block size for the columns than the rows, the row block size determines the square block storage.
@@ -7716,9 +7735,7 @@
The row and column block size determine the blocksize of the "row" and "column" vectors returned by `MatCreateVecs()`.
- Level: intermediate
-
-.seealso: `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatGetBlockSizes()`
+.seealso: `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatGetBlockSizes()`
@*/
PetscErrorCode MatSetBlockSizes(Mat mat, PetscInt rbs, PetscInt cbs)
{
@@ -7764,7 +7781,7 @@
Level: developer
-.seealso: `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`
+.seealso: `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`
@*/
PetscErrorCode MatSetBlockSizesFromMats(Mat mat, Mat fromRow, Mat fromCol)
{
@@ -7828,9 +7845,9 @@
always used.
Output Parameters:
-+ n - number of local rows in the (possibly compressed) matrix, use NULL if not needed
-. ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix, use NULL if not needed
-. ja - the column indices, use NULL if not needed
++ n - number of local rows in the (possibly compressed) matrix, use `NULL` if not needed
+. ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix, use `NULL` if not needed
+. ja - the column indices, use `NULL` if not needed
- done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers
are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set
@@ -7900,7 +7917,7 @@
Level: developer
-.seealso: `MatGetRowIJ()`, `MatRestoreColumnIJ()`
+.seealso: `Mat`, `MatGetRowIJ()`, `MatRestoreColumnIJ()`
@*/
PetscErrorCode MatGetColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
{
@@ -7939,14 +7956,14 @@
Output Parameters:
. done - `PETSC_TRUE` or `PETSC_FALSE` indicated that the values have been returned
+ Level: developer
+
Note:
- This routine zeros out n, ia, and ja. This is to prevent accidental
- us of the array after it has been restored. If you pass NULL, it will
+ This routine zeros out `n`, `ia`, and `ja`. This is to prevent accidental
+ us of the array after it has been restored. If you pass `NULL`, it will
not zero the pointers. Use of ia or ja after `MatRestoreRowIJ()` is invalid.
- Level: developer
-
-.seealso: `MatGetRowIJ()`, `MatRestoreColumnIJ()`
+.seealso: `Mat`, `MatGetRowIJ()`, `MatRestoreColumnIJ()`
@*/
PetscErrorCode MatRestoreRowIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
{
@@ -7990,7 +8007,7 @@
Level: developer
-.seealso: `MatGetColumnIJ()`, `MatRestoreRowIJ()`
+.seealso: `Mat`, `MatGetColumnIJ()`, `MatRestoreRowIJ()`
@*/
PetscErrorCode MatRestoreColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
{
@@ -8029,7 +8046,7 @@
Level: developer
-.seealso: `MatGetRowIJ()`, `MatGetColumnIJ()`
+.seealso: `Mat`, `MatGetRowIJ()`, `MatGetColumnIJ()`
@*/
PetscErrorCode MatColoringPatch(Mat mat, PetscInt ncolors, PetscInt n, ISColoringValue colorarray[], ISColoring *iscoloring)
{
@@ -8056,6 +8073,8 @@
Input Parameter:
. mat - the factored matrix to be reset
+ Level: developer
+
Notes:
This routine should be used only with factored matrices formed by in-place
factorization via ILU(0) (or by in-place LU factorization for the `MATSEQDENSE`
@@ -8079,9 +8098,7 @@
instead of working directly with matrix algebra routines such as this.
See, e.g., `KSPCreate()`.
- Level: developer
-
-.seealso: `PCFactorSetUseInPlace()`, `PCFactorGetUseInPlace()`
+.seealso: `Mat`, `PCFactorSetUseInPlace()`, `PCFactorGetUseInPlace()`
@*/
PetscErrorCode MatSetUnfactored(Mat mat)
{
@@ -8121,8 +8138,7 @@
Level: advanced
-.seealso: `MatDenseRestoreArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJGetArrayF90()`
-
+.seealso: `Mat`, `MatDenseRestoreArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJGetArrayF90()`
M*/
/*MC
@@ -8152,8 +8168,7 @@
Level: advanced
-.seealso: `MatDenseGetArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJRestoreArrayF90()`
-
+.seealso: `Mat`, `MatDenseGetArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJRestoreArrayF90()`
M*/
/*MC
@@ -8182,8 +8197,7 @@
Level: advanced
-.seealso: `MatSeqAIJRestoreArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseGetArrayF90()`
-
+.seealso: `Mat`, `MatSeqAIJRestoreArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseGetArrayF90()`
M*/
/*MC
@@ -8213,8 +8227,7 @@
Level: advanced
-.seealso: `MatSeqAIJGetArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseRestoreArrayF90()`
-
+.seealso: `Mat`, `MatSeqAIJGetArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseRestoreArrayF90()`
M*/
/*@
@@ -8252,7 +8265,7 @@
The communicator of the newly obtained matrix is ALWAYS the same as the communicator of
the input matrix.
- If iscol is NULL then all columns are obtained (not supported in Fortran).
+ If iscol is `NULL` then all columns are obtained (not supported in Fortran).
Example usage:
Consider the following 8x8 matrix with 34 non-zero values, that is
@@ -8391,7 +8404,7 @@
Note:
Propagates the options associated to `MAT_SYMMETRY_ETERNAL`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_HERMITIAN`, `MAT_SPD`, `MAT_SYMMETRIC`, and `MAT_STRUCTURAL_SYMMETRY_ETERNAL`
-.seealso: `MatSetOption()`, `MatIsSymmetricKnown()`, `MatIsSPDKnown()`, `MatIsHermitianKnown()`, MatIsStructurallySymmetricKnown()`
+.seealso: `Mat`, `MatSetOption()`, `MatIsSymmetricKnown()`, `MatIsSPDKnown()`, `MatIsHermitianKnown()`, MatIsStructurallySymmetricKnown()`
@*/
PetscErrorCode MatPropagateSymmetryOptions(Mat A, Mat B)
{
@@ -8461,12 +8474,12 @@
Level: intermediate
Notes:
- w may be the same vector as y.
+ `w` may be the same vector as `y`.
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the interpolation
-.seealso: `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
+.seealso: `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
@*/
PetscErrorCode MatInterpolateAdd(Mat A, Vec x, Vec y, Vec w)
{
@@ -8503,7 +8516,7 @@
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the interpolation
-.seealso: `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
+.seealso: `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
@*/
PetscErrorCode MatInterpolate(Mat A, Vec x, Vec y)
{
@@ -8538,7 +8551,7 @@
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the restriction
-.seealso: `MatMultAdd()`, `MatMultTransposeAdd()`, `MatInterpolate()`, `PCMG`
+.seealso: `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatInterpolate()`, `PCMG`
@*/
PetscErrorCode MatRestrict(Mat A, Vec x, Vec y)
{
@@ -8575,9 +8588,9 @@
Note:
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the interpolation. y matrix can be reused if already created with the proper sizes,
- otherwise it will be recreated. y must be initialized to NULL if not supplied.
+ otherwise it will be recreated. y must be initialized to `NULL` if not supplied.
-.seealso: `MatInterpolateAdd()`, `MatMatInterpolate()`, `MatMatRestrict()`, `PCMG`
+.seealso: `Mat`, `MatInterpolateAdd()`, `MatMatInterpolate()`, `MatMatRestrict()`, `PCMG`
@*/
PetscErrorCode MatMatInterpolateAdd(Mat A, Mat x, Mat w, Mat *y)
{
@@ -8652,9 +8665,9 @@
Note:
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the interpolation. y matrix can be reused if already created with the proper sizes,
- otherwise it will be recreated. y must be initialized to NULL if not supplied.
+ otherwise it will be recreated. y must be initialized to `NULL` if not supplied.
-.seealso: `MatInterpolate()`, `MatRestrict()`, `MatMatRestrict()`, `PCMG`
+.seealso: `Mat`, `MatInterpolate()`, `MatRestrict()`, `MatMatRestrict()`, `PCMG`
@*/
PetscErrorCode MatMatInterpolate(Mat A, Mat x, Mat *y)
{
@@ -8680,9 +8693,9 @@
Note:
This allows one to use either the restriction or interpolation (its transpose)
matrix to do the restriction. y matrix can be reused if already created with the proper sizes,
- otherwise it will be recreated. y must be initialized to NULL if not supplied.
+ otherwise it will be recreated. y must be initialized to `NULL` if not supplied.
-.seealso: `MatRestrict()`, `MatInterpolate()`, `MatMatInterpolate()`, `PCMG`
+.seealso: `Mat`, `MatRestrict()`, `MatInterpolate()`, `MatMatInterpolate()`, `PCMG`
@*/
PetscErrorCode MatMatRestrict(Mat A, Mat x, Mat *y)
{
@@ -8702,7 +8715,7 @@
Level: developer
-.seealso: `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetNullSpace()`, `MatNullSpace`
+.seealso: `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetNullSpace()`, `MatNullSpace`
@*/
PetscErrorCode MatGetNullSpace(Mat mat, MatNullSpace *nullsp)
{
@@ -8727,7 +8740,7 @@
Notes:
This null space is used by the `KSP` linear solvers to solve singular systems.
- Overwrites any previous null space that may have been attached. You can remove the null space from the matrix object by calling this routine with an nullsp of NULL
+ Overwrites any previous null space that may have been attached. You can remove the null space from the matrix object by calling this routine with an nullsp of `NULL`
For inconsistent singular systems (linear systems where the right hand side is not in the range of the operator) the `KSP` residuals will not converge to
to zero but the linear system will still be solved in a least squares sense.
@@ -8745,7 +8758,7 @@
The user should call `MatNullSpaceDestroy()`.
-.seealso: `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetTransposeNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`,
+.seealso: `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetTransposeNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`,
`KSPSetPCSide()`
@*/
PetscErrorCode MatSetNullSpace(Mat mat, MatNullSpace nullsp)
@@ -8771,7 +8784,7 @@
Level: developer
-.seealso: `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetTransposeNullSpace()`, `MatSetNullSpace()`, `MatGetNullSpace()`
+.seealso: `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetTransposeNullSpace()`, `MatSetNullSpace()`, `MatGetNullSpace()`
@*/
PetscErrorCode MatGetTransposeNullSpace(Mat mat, MatNullSpace *nullsp)
{
@@ -8799,7 +8812,7 @@
See `MatSetNullSpace()`
-.seealso: `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`, `KSPSetPCSide()`
+.seealso: `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`, `KSPSetPCSide()`
@*/
PetscErrorCode MatSetTransposeNullSpace(Mat mat, MatNullSpace nullsp)
{
@@ -8827,9 +8840,9 @@
Notes:
Overwrites any previous near null space that may have been attached
- You can remove the null space by calling this routine with an nullsp of NULL
+ You can remove the null space by calling this routine with an nullsp of `NULL`
-.seealso: `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNullSpace()`, `MatNullSpaceCreateRigidBody()`, `MatGetNearNullSpace()`
+.seealso: `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNullSpace()`, `MatNullSpaceCreateRigidBody()`, `MatGetNearNullSpace()`
@*/
PetscErrorCode MatSetNearNullSpace(Mat mat, MatNullSpace nullsp)
{
@@ -8853,11 +8866,11 @@
. mat - the matrix
Output Parameter:
-. nullsp - the null space object, NULL if not set
+. nullsp - the null space object, `NULL` if not set
Level: advanced
-.seealso: `MatNullSpace`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatNullSpaceCreate()`
+.seealso: `Mat`, `MatNullSpace`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatNullSpaceCreate()`
@*/
PetscErrorCode MatGetNearNullSpace(Mat mat, MatNullSpace *nullsp)
{
@@ -8895,7 +8908,7 @@
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: `MatGetFactor()`, `MatICCFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
+.seealso: `Mat`, `MatGetFactor()`, `MatICCFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatICCFactor(Mat mat, IS row, const MatFactorInfo *info)
{
@@ -8930,7 +8943,7 @@
This allows one to avoid during communication to perform the scaling that must be done with `MatDiagonalScale()`
-.seealso: `MatDiagonalScale()`
+.seealso: `Mat`, `MatDiagonalScale()`
@*/
PetscErrorCode MatDiagonalScaleLocal(Mat mat, Vec diag)
{
@@ -8977,7 +8990,7 @@
Note:
Matrix must have been factored by `MatCholeskyFactor()`
-.seealso: `MatGetFactor()`, `MatCholeskyFactor()`
+.seealso: `Mat`, `MatGetFactor()`, `MatCholeskyFactor()`
@*/
PetscErrorCode MatGetInertia(Mat mat, PetscInt *nneg, PetscInt *nzero, PetscInt *npos)
{
@@ -8990,7 +9003,6 @@
PetscFunctionReturn(0);
}
-/* ----------------------------------------------------------------*/
/*@C
MatSolves - Solves A x = b, given a factored matrix, for a collection of vectors
@@ -9003,13 +9015,13 @@
Output Parameter:
. x - the result vectors
+ Level: developer
+
Note:
- The vectors b and x cannot be the same. I.e., one cannot
+ The vectors `b` and `x` cannot be the same. I.e., one cannot
call `MatSolves`(A,x,x).
- Level: developer
-
-.seealso: `Vecs`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`, `MatSolve()`
+.seealso: `Mat`, `Vecs`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`, `MatSolve()`
@*/
PetscErrorCode MatSolves(Mat mat, Vecs b, Vecs x)
{
@@ -9039,6 +9051,8 @@
Output Parameters:
. flg - the result
+ Level: intermediate
+
Notes:
For real numbers `MatIsSymmetric()` and `MatIsHermitian()` return identical results
@@ -9047,9 +9061,7 @@
One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric
after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
- Level: intermediate
-
-.seealso: `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetricKnown()`,
+.seealso: `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetricKnown()`,
`MAT_SYMMETRIC`, `MAT_SYMMETRY_ETERNAL`, `MatSetOption()`
@*/
PetscErrorCode MatIsSymmetric(Mat A, PetscReal tol, PetscBool *flg)
@@ -9094,7 +9106,7 @@
One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian
after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMEMTRY_ETERNAL`,`PETSC_TRUE`)
-.seealso: `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetric()`, `MatSetOption()`,
+.seealso: `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetric()`, `MatSetOption()`,
`MatIsSymmetricKnown()`, `MatIsSymmetric()`, `MAT_HERMITIAN`, `MAT_SYMMETRY_ETERNAL`, `MatSetOption()`
@*/
PetscErrorCode MatIsHermitian(Mat A, PetscReal tol, PetscBool *flg)
@@ -9138,7 +9150,7 @@
One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric
after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
-.seealso: `MAT_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
+.seealso: `Mat`, `MAT_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
@*/
PetscErrorCode MatIsSymmetricKnown(Mat A, PetscBool *set, PetscBool *flg)
{
@@ -9175,7 +9187,7 @@
One can declare that a matrix is SPD with `MatSetOption`(mat,`MAT_SPD`,`PETSC_TRUE`) and if it is known to remain SPD
after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SPD_ETERNAL`,`PETSC_TRUE`)
-.seealso: `MAT_SPD_ETERNAL`, `MAT_SPD`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
+.seealso: `Mat`, `MAT_SPD_ETERNAL`, `MAT_SPD`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
@*/
PetscErrorCode MatIsSPDKnown(Mat A, PetscBool *set, PetscBool *flg)
{
@@ -9213,7 +9225,7 @@
One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian
after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
-.seealso: `MAT_SYMMETRY_ETERNAL`, `MAT_HERMITIAN`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`
+.seealso: `Mat`, `MAT_SYMMETRY_ETERNAL`, `MAT_HERMITIAN`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`
@*/
PetscErrorCode MatIsHermitianKnown(Mat A, PetscBool *set, PetscBool *flg)
{
@@ -9241,15 +9253,15 @@
Output Parameters:
. flg - the result
+ Level: intermediate
+
Notes:
If the matrix does yet know it is structurally symmetric this can be an expensive operation, also available `MatIsStructurallySymmetricKnown()`
One can declare that a matrix is structurally symmetric with `MatSetOption`(mat,`MAT_STRUCTURALLY_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain structurally
symmetric after changes to the matrices values one can call `MatSetOption`(mat,`MAT_STRUCTURAL_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
- Level: intermediate
-
-.seealso: `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsSymmetric()`, `MatSetOption()`, `MatIsStructurallySymmetricKnown()`
+.seealso: `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsSymmetric()`, `MatSetOption()`, `MatIsStructurallySymmetricKnown()`
@*/
PetscErrorCode MatIsStructurallySymmetric(Mat A, PetscBool *flg)
{
@@ -9285,7 +9297,7 @@
Use `MatIsStructurallySymmetric()` to explicitly check if a matrix is structurally symmetric (this is an expensive operation)
-.seealso: `MAT_STRUCTURALLY_SYMMETRIC`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
+.seealso: `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
@*/
PetscErrorCode MatIsStructurallySymmetricKnown(Mat A, PetscBool *set, PetscBool *flg)
{
@@ -9342,13 +9354,13 @@
+ right - (optional) vector that the matrix can be multiplied against
- left - (optional) vector that the matrix vector product can be stored in
+ Level: advanced
+
Notes:
The blocksize of the returned vectors is determined by the row and column block sizes set with `MatSetBlockSizes()` or the single blocksize (same for both) set by `MatSetBlockSize()`.
These are new vectors which are not owned by the mat, they should be destroyed in `VecDestroy()` when no longer needed
- Level: advanced
-
.seealso: `Mat`, `Vec`, `VecCreate()`, `VecDestroy()`, `DMCreateGlobalVector()`
@*/
PetscErrorCode MatCreateVecs(Mat mat, Vec *right, Vec *left)
@@ -9402,19 +9414,19 @@
Input Parameters:
. info - the `MatFactorInfo` data structure
+ Level: developer
+
Notes:
The solvers are generally used through the `KSP` and `PC` objects, for example
`PCLU`, `PCILU`, `PCCHOLESKY`, `PCICC`
Once the data structure is initialized one may change certain entries as desired for the particular factorization to be performed
- Level: developer
-
Developer Note:
The Fortran interface is not autogenerated as the
interface definition cannot be generated correctly [due to `MatFactorInfo`]
-.seealso: `MatGetFactor()`, `MatFactorInfo`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorInfo`
@*/
PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *info)
{
@@ -9432,6 +9444,8 @@
+ mat - the factored matrix
- is - the index set defining the Schur indices (0-based)
+ Level: advanced
+
Notes:
Call `MatFactorSolveSchurComplement()` or `MatFactorSolveSchurComplementTranspose()` after this call to solve a Schur complement system.
@@ -9439,11 +9453,8 @@
This functionality is only supported for `MATSOLVERMUMPS` and `MATSOLVERMKL_PARDISO`
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorGetSchurComplement()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSolveSchurComplement()`,
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorGetSchurComplement()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSolveSchurComplement()`,
`MatFactorSolveSchurComplementTranspose()`, `MatFactorSolveSchurComplement()`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO`
-
@*/
PetscErrorCode MatFactorSetSchurIS(Mat mat, IS is)
{
@@ -9471,8 +9482,10 @@
Input Parameters:
+ F - the factored matrix obtained by calling `MatGetFactor()`
-. S - location where to return the Schur complement, can be NULL
-- status - the status of the Schur complement matrix, can be NULL
+. S - location where to return the Schur complement, can be `NULL`
+- status - the status of the Schur complement matrix, can be `NULL`
+
+ Level: advanced
Notes:
You must call `MatFactorSetSchurIS()` before calling this routine.
@@ -9491,9 +9504,7 @@
The reason this routine exists is because the representation of the Schur complement within the factor matrix may be different than a standard PETSc
matrix representation and we normally do not want to use the time or memory to make a copy as a regular PETSc matrix.
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorSchurStatus`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorSchurStatus`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO`
@*/
PetscErrorCode MatFactorCreateSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status)
{
@@ -9522,15 +9533,17 @@
Input Parameters:
+ F - the factored matrix obtained by calling `MatGetFactor()`
-. *S - location where to return the Schur complement, can be NULL
-- status - the status of the Schur complement matrix, can be NULL
+. *S - location where to return the Schur complement, can be `NULL`
+- status - the status of the Schur complement matrix, can be `NULL`
+
+ Level: advanced
Notes:
You must call `MatFactorSetSchurIS()` before calling this routine.
Schur complement mode is currently implemented for sequential matrices with factor type of `MATSOLVERMUMPS`
- The routine returns a the Schur Complement stored within the data strutures of the solver.
+ The routine returns a the Schur Complement stored within the data structures of the solver.
If `MatFactorInvertSchurComplement()` has previously been called, the returned matrix is actually the inverse of the Schur complement.
@@ -9540,9 +9553,7 @@
See `MatCreateSchurComplement()` or `MatGetSchurComplement()` for ways to create virtual or approximate Schur complements.
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
@*/
PetscErrorCode MatFactorGetSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status)
{
@@ -9567,7 +9578,7 @@
Level: advanced
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
@*/
PetscErrorCode MatFactorRestoreSchurComplement(Mat F, Mat *S, MatFactorSchurStatus status)
{
@@ -9592,14 +9603,14 @@
. rhs - location where the right hand side of the Schur complement system is stored
- sol - location where the solution of the Schur complement system has to be returned
+ Level: advanced
+
Notes:
The sizes of the vectors should match the size of the Schur complement
Must be called after `MatFactorSetSchurIS()`
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplement()`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplement()`
@*/
PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat F, Vec rhs, Vec sol)
{
@@ -9636,14 +9647,14 @@
. rhs - location where the right hand side of the Schur complement system is stored
- sol - location where the solution of the Schur complement system has to be returned
+ Level: advanced
+
Notes:
The sizes of the vectors should match the size of the Schur complement
Must be called after `MatFactorSetSchurIS()`
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplementTranspose()`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplementTranspose()`
@*/
PetscErrorCode MatFactorSolveSchurComplement(Mat F, Vec rhs, Vec sol)
{
@@ -9678,14 +9689,14 @@
Input Parameters:
. F - the factored matrix obtained by calling `MatGetFactor()`
+ Level: advanced
+
Notes:
Must be called after `MatFactorSetSchurIS()`.
Call `MatFactorGetSchurComplement()` or `MatFactorCreateSchurComplement()` AFTER this call to actually compute the inverse and get access to it.
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorCreateSchurComplement()`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorCreateSchurComplement()`
@*/
PetscErrorCode MatFactorInvertSchurComplement(Mat F)
{
@@ -9707,12 +9718,12 @@
Input Parameters:
. F - the factored matrix obtained by calling `MatGetFactor()`
+ Level: advanced
+
Note:
Must be called after `MatFactorSetSchurIS()`
- Level: advanced
-
-.seealso: `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorInvertSchurComplement()`
+.seealso: `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorInvertSchurComplement()`
@*/
PetscErrorCode MatFactorFactorizeSchurComplement(Mat F)
{
@@ -9728,7 +9739,7 @@
/*@
MatPtAP - Creates the matrix product C = P^T * A * P
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the matrix
@@ -9740,6 +9751,8 @@
Output Parameters:
. C - the product matrix
+ Level: intermediate
+
Notes:
C will be created and must be destroyed by the user with `MatDestroy()`.
@@ -9748,9 +9761,7 @@
Developer Note:
For matrix types without special implementation the function fallbacks to `MatMatMult()` followed by `MatTransposeMatMult()`.
- Level: intermediate
-
-.seealso: `MatProductCreate()`, `MatMatMult()`, `MatRARt()`
+.seealso: `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatRARt()`
@*/
PetscErrorCode MatPtAP(Mat A, Mat P, MatReuse scall, PetscReal fill, Mat *C)
{
@@ -9781,7 +9792,7 @@
/*@
MatRARt - Creates the matrix product C = R * A * R^T
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the matrix
@@ -9793,6 +9804,8 @@
Output Parameters:
. C - the product matrix
+ Level: intermediate
+
Notes:
C will be created and must be destroyed by the user with `MatDestroy()`.
@@ -9803,9 +9816,7 @@
parallel MatRARt is implemented via explicit transpose of R, which could be very expensive.
We recommend using MatPtAP().
- Level: intermediate
-
-.seealso: `MatProductCreate()`, `MatMatMult()`, `MatPtAP()`
+.seealso: `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatPtAP()`
@*/
PetscErrorCode MatRARt(Mat A, Mat R, MatReuse scall, PetscReal fill, Mat *C)
{
@@ -9881,7 +9892,7 @@
/*@
MatMatMult - Performs matrix-matrix multiplication C=A*B.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the left matrix
@@ -9918,7 +9929,7 @@
Level: intermediate
-.seealso: `MatProductType`, `MATPRODUCT_AB`, `MatTransposeMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`, `MatProductCreate()`, `MatProductSymbolic()`, `MatProductReplaceMats()`, `MatProductNumeric()`
+.seealso: `Mat`, `MatProductType`, `MATPRODUCT_AB`, `MatTransposeMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`, `MatProductCreate()`, `MatProductSymbolic()`, `MatProductReplaceMats()`, `MatProductNumeric()`
@*/
PetscErrorCode MatMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
{
@@ -9930,7 +9941,7 @@
/*@
MatMatTransposeMult - Performs matrix-matrix multiplication C=A*B^T.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the left matrix
@@ -9941,6 +9952,8 @@
Output Parameters:
. C - the product matrix
+ Level: intermediate
+
Notes:
C will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`.
@@ -9959,9 +9972,7 @@
first redundantly copies the transposed B matrix on each process and requiers O(log P) communication complexity;
the second never stores more than one portion of the B matrix at a time by requires O(P) communication complexity.
- Level: intermediate
-
-.seealso: `MatProductCreate()`, `MATPRODUCT_ABt`, `MatMatMult()`, `MatTransposeMatMult()` `MatPtAP()`, `MatProductCreate()`, `MatProductAlgorithm`, `MatProductType`, `MATPRODUCT_ABt`
+.seealso: `Mat`, `MatProductCreate()`, `MATPRODUCT_ABt`, `MatMatMult()`, `MatTransposeMatMult()` `MatPtAP()`, `MatProductCreate()`, `MatProductAlgorithm`, `MatProductType`, `MATPRODUCT_ABt`
@*/
PetscErrorCode MatMatTransposeMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
{
@@ -9974,7 +9985,7 @@
/*@
MatTransposeMatMult - Performs matrix-matrix multiplication C=A^T*B.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the left matrix
@@ -9985,6 +9996,8 @@
Output Parameters:
. C - the product matrix
+ Level: intermediate
+
Notes:
C will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`.
@@ -9998,9 +10011,7 @@
This routine is currently implemented for pairs of `MATAIJ` matrices and pairs of `MATSEQDENSE` matrices and classes
which inherit from `MATSEQAIJ`. C will be of the same type as the input matrices.
- Level: intermediate
-
-.seealso: `MatProductCreate()`, `MATPRODUCT_AtB`, `MatMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`
+.seealso: `Mat`, `MatProductCreate()`, `MATPRODUCT_AtB`, `MatMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`
@*/
PetscErrorCode MatTransposeMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
{
@@ -10012,7 +10023,7 @@
/*@
MatMatMatMult - Performs matrix-matrix-matrix multiplication D=A*B*C.
- Neighbor-wise Collective on A
+ Neighbor-wise Collective
Input Parameters:
+ A - the left matrix
@@ -10025,6 +10036,8 @@
Output Parameters:
. D - the product matrix
+ Level: intermediate
+
Notes:
Unless scall is `MAT_REUSE_MATRIX` D will be created.
@@ -10038,9 +10051,7 @@
If you have many matrices with the same non-zero structure to multiply, you
should use `MAT_REUSE_MATRIX` in all calls but the first
- Level: intermediate
-
-.seealso: `MatProductCreate()`, `MATPRODUCT_ABC`, `MatMatMult`, `MatPtAP()`, `MatMatTransposeMult()`, `MatTransposeMatMult()`
+.seealso: `Mat`, `MatProductCreate()`, `MATPRODUCT_ABC`, `MatMatMult`, `MatPtAP()`, `MatMatTransposeMult()`, `MatTransposeMatMult()`
@*/
PetscErrorCode MatMatMatMult(Mat A, Mat B, Mat C, MatReuse scall, PetscReal fill, Mat *D)
{
@@ -10080,6 +10091,8 @@
Output Parameter:
. matredundant - redundant matrix
+ Level: advanced
+
Notes:
`MAT_REUSE_MATRIX` can only be used when the nonzero structure of the
original matrix has not changed from that last call to MatCreateRedundantMatrix().
@@ -10089,9 +10102,7 @@
`PetscSubcommCreate()` can be used to manage the creation of the subcomm but need not be.
- Level: advanced
-
-.seealso: `MatDestroy()`, `PetscSubcommCreate()`, `PetscSubComm`
+.seealso: `Mat`, `MatDestroy()`, `PetscSubcommCreate()`, `PetscSubComm`
@*/
PetscErrorCode MatCreateRedundantMatrix(Mat mat, PetscInt nsubcomm, MPI_Comm subcomm, MatReuse reuse, Mat *matredundant)
{
@@ -10205,29 +10216,29 @@
Input Parameters:
+ mat - the matrix
-. subcomm - the subcommunicator obtained by MPI_Com_split(comm)
+. subcomm - the sub communicator obtained as if by `MPI_Comm_split(PetscObjectComm((PetscObject)mat))`
- scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
Output Parameter:
-. subMat - 'parallel submatrices each spans a given subcomm
+. subMat - parallel sub-matrices each spanning a given `subcomm`
+
+ Level: advanced
Notes:
- The submatrix partition across processors is dictated by 'subComm' a
- communicator obtained by MPI_comm_split() or via `PetscSubcommCreate()`. The subComm
- is not restriced to be grouped with consecutive original ranks.
+ The submatrix partition across processors is dictated by `subComm` a
+ communicator obtained by `MPI_comm_split()` or via `PetscSubcommCreate()`. The `subComm`
+ is not restricted to be grouped with consecutive original ranks.
- Due the MPI_Comm_split() usage, the parallel layout of the submatrices
+ Due the `MPI_Comm_split()` usage, the parallel layout of the submatrices
map directly to the layout of the original matrix [wrt the local
row,col partitioning]. So the original 'DiagonalMat' naturally maps
- into the 'DiagonalMat' of the subMat, hence it is used directly from
- the subMat. However the offDiagMat looses some columns - and this is
+ into the 'DiagonalMat' of the `subMat`, hence it is used directly from
+ the `subMat`. However the offDiagMat looses some columns - and this is
reconstructed with `MatSetValues()`
This is used by `PCBJACOBI` when a single block spans multiple MPI ranks
- Level: advanced
-
-.seealso: `MatCreateRedundantMatrix()`, `MatCreateSubMatrices()`, `PCBJACOBI`
+.seealso: `Mat`, `MatCreateRedundantMatrix()`, `MatCreateSubMatrices()`, `PCBJACOBI`
@*/
PetscErrorCode MatGetMultiProcBlock(Mat mat, MPI_Comm subComm, MatReuse scall, Mat *subMat)
{
@@ -10261,18 +10272,18 @@
Level: intermediate
Notes:
- The submat should be returned with `MatRestoreLocalSubMatrix()`.
+ `submat` should be disposed of with `MatRestoreLocalSubMatrix()`.
- Depending on the format of mat, the returned submat may not implement `MatMult()`. Its communicator may be
- the same as mat, it may be `PETSC_COMM_SELF`, or some other subcomm of mat's.
+ Depending on the format of `mat`, the returned submat may not implement `MatMult()`. Its communicator may be
+ the same as mat, it may be `PETSC_COMM_SELF`, or some other subcomm of `mat`'s.
- The submat always implements `MatSetValuesLocal()`. If isrow and iscol have the same block size, then
+ `submat` always implements `MatSetValuesLocal()`. If `isrow` and `iscol` have the same block size, then
`MatSetValuesBlockedLocal()` will also be implemented.
- The mat must have had a `ISLocalToGlobalMapping` provided to it with `MatSetLocalToGlobalMapping()`.
- Matrices obtained with DMCreateMatrix() generally already have the local to global mapping provided.
+ `mat` must have had a `ISLocalToGlobalMapping` provided to it with `MatSetLocalToGlobalMapping()`.
+ Matrices obtained with `DMCreateMatrix()` generally already have the local to global mapping provided.
-.seealso: `MatRestoreLocalSubMatrix()`, `MatCreateLocalRef()`, `MatSetLocalToGlobalMapping()`
+.seealso: `Mat`, `MatRestoreLocalSubMatrix()`, `MatCreateLocalRef()`, `MatSetLocalToGlobalMapping()`
@*/
PetscErrorCode MatGetLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat)
{
@@ -10305,7 +10316,7 @@
Level: intermediate
-.seealso: `MatGetLocalSubMatrix()`
+.seealso: `Mat`, `MatGetLocalSubMatrix()`
@*/
PetscErrorCode MatRestoreLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat)
{
@@ -10326,7 +10337,6 @@
PetscFunctionReturn(0);
}
-/* --------------------------------------------------------*/
/*@
MatFindZeroDiagonals - Finds all the rows of a matrix that have zero or no diagonal entry in the matrix
@@ -10340,7 +10350,7 @@
Level: developer
-.seealso: `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
+.seealso: `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
@*/
PetscErrorCode MatFindZeroDiagonals(Mat mat, IS *is)
{
@@ -10388,7 +10398,7 @@
Level: developer
-.seealso: `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
+.seealso: `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
@*/
PetscErrorCode MatFindOffBlockDiagonalEntries(Mat mat, IS *is)
{
@@ -10454,7 +10464,7 @@
The blocks never overlap between two MPI ranks, use `MatInvertVariableBlockEnvelope()` for that case
-.seealso: `MatInvertBlockDiagonal()`, `MatSetVariableBlockSizes()`, `MatInvertVariableBlockEnvelope()`
+.seealso: `Mat`, `MatInvertBlockDiagonal()`, `MatSetVariableBlockSizes()`, `MatInvertVariableBlockEnvelope()`
@*/
PetscErrorCode MatInvertVariableBlockDiagonal(Mat mat, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *values)
{
@@ -10473,14 +10483,14 @@
Input Parameters:
+ A - the matrix
-- C - matrix with inverted block diagonal of A. This matrix should be created and may have its type set.
-
- Note:
- The blocksize of the matrix is used to determine the blocks on the diagonal of C
+- C - matrix with inverted block diagonal of `A`. This matrix should be created and may have its type set.
Level: advanced
-.seealso: `MatInvertBlockDiagonal()`
+ Note:
+ The blocksize of the matrix is used to determine the blocks on the diagonal of `C`
+
+.seealso: `Mat`, `MatInvertBlockDiagonal()`
@*/
PetscErrorCode MatInvertBlockDiagonalMat(Mat A, Mat C)
{
@@ -10517,7 +10527,7 @@
Level: intermediate
-.seealso: `MatTransposeColoringCreate()`
+.seealso: `Mat`, `MatTransposeColoringCreate()`
@*/
PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *c)
{
@@ -10560,8 +10570,7 @@
Note:
These are used internally for some implementations of `MatRARt()`
-.seealso: `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplyDenToSp()`
-
+.seealso: `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplyDenToSp()`
@*/
PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring coloring, Mat B, Mat Btdense)
{
@@ -10594,8 +10603,7 @@
Note:
These are used internally for some implementations of `MatRARt()`
-.seealso: `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`
-
+.seealso: `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`
@*/
PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring matcoloring, Mat Cden, Mat Csp)
{
@@ -10624,7 +10632,7 @@
Level: intermediate
-.seealso: `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`,
+.seealso: `Mat`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`,
`MatTransColoringApplyDenToSp()`
@*/
PetscErrorCode MatTransposeColoringCreate(Mat mat, ISColoring iscoloring, MatTransposeColoring *color)
@@ -10660,6 +10668,8 @@
Output Parameter:
. state - the current state
+ Level: intermediate
+
Notes:
You can only compare states from two different calls to the SAME matrix, you cannot compare calls between
different matrices
@@ -10668,9 +10678,7 @@
Use the result of `PetscObjectGetId()` to compare if a previously checked matrix is the same as the current matrix, do not compare object pointers.
- Level: intermediate
-
-.seealso: `PetscObjectStateGet()`, `PetscObjectGetId()`
+.seealso: `Mat`, `PetscObjectStateGet()`, `PetscObjectGetId()`
@*/
PetscErrorCode MatGetNonzeroState(Mat mat, PetscObjectState *state)
{
@@ -10728,7 +10736,7 @@
/*@
MatSubdomainsCreateCoalesce - Creates index subdomains by coalescing adjacent ranks' ownership ranges.
- Collective on A
+ Collective
Input Parameters:
+ A - the matrix to create subdomains from
@@ -10792,7 +10800,7 @@
Level: developer
-.seealso: `MatPtAP()`, `MatMatMatMult()`
+.seealso: `Mat`, `MatPtAP()`, `MatMatMatMult()`
@*/
PetscErrorCode MatGalerkin(Mat restrct, Mat dA, Mat interpolate, MatReuse reuse, PetscReal fill, Mat *A)
{
@@ -10839,28 +10847,33 @@
Level: developer
Usage:
-$ extern PetscErrorCode usermult(Mat,Vec,Vec);
-$ PetscCall(MatCreateXXX(comm,...&A);
-$ PetscCall(MatSetOperation(A,MATOP_MULT,(void(*)(void))usermult);
+.vb
+ extern PetscErrorCode usermult(Mat, Vec, Vec);
+
+ PetscCall(MatCreateXXX(comm, ..., &A));
+ PetscCall(MatSetOperation(A, MATOP_MULT, (PetscVoidFunction)usermult));
+.ve
Notes:
- See the file include/petscmat.h for a complete list of matrix
+ See the file `include/petscmat.h` for a complete list of matrix
operations, which all have the form MATOP_<OPERATION>, where
<OPERATION> is the name (in all capital letters) of the
- user interface routine (e.g., MatMult() -> MATOP_MULT).
+ user interface routine (e.g., `MatMult()` -> `MATOP_MULT`).
All user-provided functions (except for `MATOP_DESTROY`) should have the same calling
sequence as the usual matrix interface routines, since they
are intended to be accessed via the usual matrix interface
routines, e.g.,
-$ MatMult(Mat,Vec,Vec) -> usermult(Mat,Vec,Vec)
+.vb
+ MatMult(Mat, Vec, Vec) -> usermult(Mat, Vec, Vec)
+.ve
- In particular each function MUST return an error code of 0 on success and
+ In particular each function MUST return `PETSC_SUCCESS` on success and
nonzero on failure.
This routine is distinct from `MatShellSetOperation()` in that it can be called on any matrix type.
-.seealso: `MatGetOperation()`, `MatCreateShell()`, `MatShellSetContext()`, `MatShellSetOperation()`
+.seealso: `Mat`, `MatGetOperation()`, `MatCreateShell()`, `MatShellSetContext()`, `MatShellSetOperation()`
@*/
PetscErrorCode MatSetOperation(Mat mat, MatOperation op, void (*f)(void))
{
@@ -10897,7 +10910,7 @@
This routine is distinct from `MatShellGetOperation()` in that it can be called on any matrix type.
-.seealso: `MatSetOperation()`, `MatCreateShell()`, `MatShellGetContext()`, `MatShellGetOperation()`
+.seealso: `Mat`, `MatSetOperation()`, `MatCreateShell()`, `MatShellGetContext()`, `MatShellGetOperation()`
@*/
PetscErrorCode MatGetOperation(Mat mat, MatOperation op, void (**f)(void))
{
@@ -10922,12 +10935,9 @@
Level: advanced
Note:
- See the file include/petscmat.h for a complete list of matrix
- operations, which all have the form MATOP_<OPERATION>, where
- <OPERATION> is the name (in all capital letters) of the
- user-level routine. E.g., `MatNorm()` -> `MATOP_NORM`.
+ See `MatSetOperation()` for additional discussion on naming convention and usage of `op`.
-.seealso: `MatCreateShell()`, `MatGetOperation()`, `MatSetOperation()`
+.seealso: `Mat`, `MatCreateShell()`, `MatGetOperation()`, `MatSetOperation()`
@*/
PetscErrorCode MatHasOperation(Mat mat, MatOperation op, PetscBool *has)
{
@@ -10964,7 +10974,7 @@
Level: beginner
-.seealso: `MatCreate()`, `MatSetSizes()`, `PetscLayout`
+.seealso: `Mat`, `MatCreate()`, `MatSetSizes()`, `PetscLayout`
@*/
PetscErrorCode MatHasCongruentLayouts(Mat mat, PetscBool *cong)
{
@@ -11010,7 +11020,7 @@
Level: advanced
-.seealso: `MatCreate()`, `PCGAMG`
+.seealso: `Mat`, `MatCreate()`, `PCGAMG`
*/
PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat A, PetscBool sym, PetscBool scale, PetscReal filter, Mat *graph)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/matfd/fdmatrix.c petsc-3.18.5+dfsg1/src/mat/matfd/fdmatrix.c
--- petsc-3.18.4+dfsg1/src/mat/matfd/fdmatrix.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/matfd/fdmatrix.c 2023-02-27 23:11:05.000000000 +0100
@@ -92,7 +92,7 @@
involves more than 33 then some seemingly identical colors are displayed making it look
like an illegal coloring. This is just a graphical artifact.
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`
@*/
PetscErrorCode MatFDColoringView(MatFDColoring c, PetscViewer viewer)
{
@@ -158,13 +158,13 @@
.ve
Input Parameters:
-+ coloring - the coloring context
-. error_rel - relative error
++ matfd - the coloring context
+. error - relative error
- umin - minimum allowable u-value magnitude
Level: advanced
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFromOptions()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFromOptions()`
@*/
PetscErrorCode MatFDColoringSetParameters(MatFDColoring matfd, PetscReal error, PetscReal umin)
{
@@ -189,7 +189,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFromOptions()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFromOptions()`
@*/
PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring matfd, PetscInt brows, PetscInt bcols)
{
@@ -217,7 +217,7 @@
Notes:
When the coloring type is `IS_COLORING_LOCAL` the coloring is in the local ordering of the unknowns.
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`
@*/
PetscErrorCode MatFDColoringSetUp(Mat mat, ISColoring iscoloring, MatFDColoring color)
{
@@ -252,7 +252,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatFDColoringSetFromOptions()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatFDColoringSetFromOptions()`
@*/
PetscErrorCode MatFDColoringGetFunction(MatFDColoring matfd, PetscErrorCode (**f)(void), void **fctx)
{
@@ -288,7 +288,7 @@
In Fortran you must call `MatFDColoringSetFunction()` for a coloring object to
be used without `SNES` or within the `SNES` solvers.
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringGetFunction()`, `MatFDColoringSetFromOptions()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringGetFunction()`, `MatFDColoringSetFromOptions()`
@*/
PetscErrorCode MatFDColoringSetFunction(MatFDColoring matfd, PetscErrorCode (*f)(void), void *fctx)
{
@@ -326,7 +326,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringView()`, `MatFDColoringSetParameters()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringView()`, `MatFDColoringSetParameters()`
@*/
PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring matfd)
{
@@ -370,14 +370,14 @@
Options Database Keys:
. -mat_fd_type - "wp" or "ds"
+ Level: intermediate
+
Note:
It is goofy that the argument type is `MatMFFDType` since the `MatFDColoring` actually computes the matrix entries
but the process of computing the entries is the same as as with the `MATMFFD` operation so we should reuse the names instead of
introducing another one.
- Level: intermediate
-
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringView()`, `MatFDColoringSetParameters()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringView()`, `MatFDColoringSetParameters()`
@*/
PetscErrorCode MatFDColoringSetType(MatFDColoring matfd, MatMFFDType type)
{
@@ -385,7 +385,7 @@
PetscValidHeaderSpecific(matfd, MAT_FDCOLORING_CLASSID, 1);
/*
It is goofy to handle the strings this way but currently there is no code to free a dynamically created matfd->htype
- and this function is being provided as patch for a release so it shouldn't change the implementaton
+ and this function is being provided as patch for a release so it shouldn't change the implementation
*/
if (type[0] == 'w' && type[1] == 'p') matfd->htype = "wp";
else if (type[0] == 'd' && type[1] == 's') matfd->htype = "ds";
@@ -429,7 +429,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringDestroy()`, `SNESComputeJacobianDefaultColor()`, `ISColoringCreate()`,
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringDestroy()`, `SNESComputeJacobianDefaultColor()`, `ISColoringCreate()`,
`MatFDColoringSetFunction()`, `MatFDColoringSetFromOptions()`, `MatFDColoringApply()`,
`MatFDColoringView()`, `MatFDColoringSetParameters()`, `MatColoringCreate()`, `DMCreateColoring()`, `MatFDColoringSetValues()`
@*/
@@ -484,7 +484,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`
@*/
PetscErrorCode MatFDColoringDestroy(MatFDColoring *c)
{
@@ -537,16 +537,18 @@
Fortran Note:
This routine has a different interface for Fortran
-$ #include <petsc/finclude/petscmat.h>
-$ use petscmat
-$ PetscInt, pointer :: array(:)
-$ PetscErrorCode ierr
-$ MatFDColoring i
-$ call MatFDColoringGetPerturbedColumnsF90(i,array,ierr)
-$ use the entries of array ...
-$ call MatFDColoringRestorePerturbedColumnsF90(i,array,ierr)
+.vb
+ #include <petsc/finclude/petscmat.h>
+ use petscmat
+ PetscInt, pointer :: array(:)
+ PetscErrorCode ierr
+ MatFDColoring i
+ call MatFDColoringGetPerturbedColumnsF90(i,array,ierr)
+ use the entries of array ...
+ call MatFDColoringRestorePerturbedColumnsF90(i,array,ierr)
+.ve
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`, `MatFDColoringView()`, `MatFDColoringApply()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`, `MatFDColoringView()`, `MatFDColoringApply()`
@*/
PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring coloring, PetscInt *n, const PetscInt *cols[])
{
@@ -580,7 +582,7 @@
Level: intermediate
-.seealso: `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`, `MatFDColoringView()`, `MatFDColoringSetFunction()`, `MatFDColoringSetValues()`
+.seealso: `Mat`, `MatFDColoring`, `MatFDColoringCreate()`, `MatFDColoringDestroy()`, `MatFDColoringView()`, `MatFDColoringSetFunction()`, `MatFDColoringSetValues()`
@*/
PetscErrorCode MatFDColoringApply(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/order/degree.c petsc-3.18.5+dfsg1/src/mat/order/degree.c
--- petsc-3.18.4+dfsg1/src/mat/order/degree.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/order/degree.c 2023-02-27 23:11:05.000000000 +0100
@@ -19,7 +19,7 @@
/* OUTPUT PARAMETERS -*/
/* DEG - ARRAY CONTAINING THE DEGREES OF THE NODES IN*/
/* THE COMPONENT.*/
-/* CCSIZE-SIZE OF THE COMPONENT SPECIFED BY MASK AND ROOT*/
+/* CCSIZE-SIZE OF THE COMPONENT SPECIFIED BY MASK AND ROOT*/
/* WORKING PARAMETER -*/
/* LS - A TEMPORARY VECTOR USED TO STORE THE NODES OF THE*/
/* COMPONENT LEVEL BY LEVEL.*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/order/wbm.c petsc-3.18.5+dfsg1/src/mat/order/wbm.c
--- petsc-3.18.4+dfsg1/src/mat/order/wbm.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/order/wbm.c 2023-02-27 23:11:05.000000000 +0100
@@ -10,7 +10,7 @@
corresponds to the PETSc BLAS/LAPACK mangling flag (we pass this flag to configure SuperLU_dist)
*/
- /* Why not include superlu_dist inludes? */
+ /* Why not include superlu_dist includes? */
#if defined(PETSC_BLASLAPACK_CAPS)
#define mc64id_dist MC64ID_DIST
#define mc64ad_dist MC64AD_DIST
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tests/ex199.c petsc-3.18.5+dfsg1/src/mat/tests/ex199.c
--- petsc-3.18.4+dfsg1/src/mat/tests/ex199.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tests/ex199.c 2023-02-27 23:11:05.000000000 +0100
@@ -1,5 +1,5 @@
-static char help[] = "Tests the different MatColoring implementatons.\n\n";
+static char help[] = "Tests the different MatColoring implementations.\n\n";
#include <petscmat.h>
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tests/ex1.c petsc-3.18.5+dfsg1/src/mat/tests/ex1.c
--- petsc-3.18.4+dfsg1/src/mat/tests/ex1.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tests/ex1.c 2023-02-27 23:11:05.000000000 +0100
@@ -200,7 +200,7 @@
PetscCall(VecDestroy(&ytmp));
if (qr) {
- /* setup rectanglar */
+ /* setup rectangular */
PetscCall(createMatsAndVecs(m, n, nrhs, full, &mat, &RHS, &SOLU, &x, &y, &b));
PetscCall(VecDuplicate(y, &ytmp));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tests/ex24.c petsc-3.18.5+dfsg1/src/mat/tests/ex24.c
--- petsc-3.18.4+dfsg1/src/mat/tests/ex24.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tests/ex24.c 2023-02-27 23:11:05.000000000 +0100
@@ -1,6 +1,6 @@
-static char help[] = "Tests the different MatColoring implementatons and ISColoringTestValid() \n\
- Modifed from the code contributed by Ali Berk Kahraman. \n\n";
+static char help[] = "Tests the different MatColoring implementations and ISColoringTestValid() \n\
+ Modified from the code contributed by Ali Berk Kahraman. \n\n";
#include <petscmat.h>
PetscErrorCode FormJacobian(Mat A)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tests/ex42.c petsc-3.18.5+dfsg1/src/mat/tests/ex42.c
--- petsc-3.18.4+dfsg1/src/mat/tests/ex42.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tests/ex42.c 2023-02-27 23:11:05.000000000 +0100
@@ -61,7 +61,7 @@
/* Create the random Index Sets */
for (i = 0; i < nd; i++) {
- /* Skip a few,so that the IS on different procs are diffeent*/
+ /* Skip a few,so that the IS on different procs are different*/
for (j = 0; j < rank; j++) PetscCall(PetscRandomGetValue(r, &rand));
PetscCall(PetscRandomGetValue(r, &rand));
lsize = (PetscInt)(rand * (m / bs));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tests/ex72mmio.h petsc-3.18.5+dfsg1/src/mat/tests/ex72mmio.h
--- petsc-3.18.4+dfsg1/src/mat/tests/ex72mmio.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tests/ex72mmio.h 2023-02-27 23:11:05.000000000 +0100
@@ -83,7 +83,7 @@
MM_matrix_typecode: 4-character sequence
- ojbect sparse/ data storage
+ object sparse/ data storage
dense type scheme
string position: [0] [1] [2] [3]
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tutorials/ex18.c petsc-3.18.5+dfsg1/src/mat/tutorials/ex18.c
--- petsc-3.18.4+dfsg1/src/mat/tutorials/ex18.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/mat/tutorials/ex18.c 2023-02-27 23:11:05.000000000 +0100
@@ -53,7 +53,7 @@
PetscCall(MatSetSizes(*A, fe->n, fe->n, PETSC_DECIDE, PETSC_DECIDE));
PetscCall(MatSetFromOptions(*A));
- /* determine for each entry in each element stiffness matrix the global row and colum */
+ /* determine for each entry in each element stiffness matrix the global row and column */
/* since the element is triangular with piecewise linear basis functions there are three degrees of freedom per element, one for each vertex */
PetscCall(PetscMalloc2(3 * 3 * fe->Ne, &oor, 3 * 3 * fe->Ne, &ooc));
for (PetscInt e = 0; e < fe->Ne; e++) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/tutorials/ex5cu.cu petsc-3.18.5+dfsg1/src/mat/tutorials/ex5cu.cu
--- petsc-3.18.4+dfsg1/src/mat/tutorials/ex5cu.cu 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/tutorials/ex5cu.cu 2023-02-27 23:11:05.000000000 +0100
@@ -22,7 +22,7 @@
PetscErrorCode ierr;
for (i = start + my0; i < end + 1; i += inc) {
- PetscInt js[] = {i - 1, i}, nn = (i == N) ? 1 : 2; // negative indices are igored but >= N are not, so clip end
+ PetscInt js[] = {i - 1, i}, nn = (i == N) ? 1 : 2; // negative indices are ignored but >= N are not, so clip end
PetscScalar values[] = {1, 1, 1, 1};
ierr = MatSetValuesDevice(d_mat, nn, js, nn, js, values, ADD_VALUES);
if (ierr) assert(0);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/mat/utils/matstash.c petsc-3.18.5+dfsg1/src/mat/utils/matstash.c
--- petsc-3.18.4+dfsg1/src/mat/utils/matstash.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/mat/utils/matstash.c 2023-02-27 23:11:05.000000000 +0100
@@ -352,7 +352,7 @@
space->idy[l] = idxn[i];
/* Now copy over the block of values. Store the values column oriented.
This enables inserting multiple blocks belonging to a row with a single
- funtion call */
+ function call */
array = space->val + bs2 * l;
vals = values + idx * bs2 * n + bs * i;
for (j = 0; j < bs; j++) {
@@ -403,7 +403,7 @@
space->idy[l] = idxn[i];
/* Now copy over the block of values. Store the values column oriented.
This enables inserting multiple blocks belonging to a row with a single
- funtion call */
+ function call */
array = space->val + bs2 * l;
vals = values + idx * bs2 * n + bs * i;
for (j = 0; j < bs; j++) {
@@ -779,7 +779,7 @@
PetscFunctionReturn(0);
}
-/* Callback invoked after target rank has initiatied receive of rendezvous message.
+/* Callback invoked after target rank has initiated receive of rendezvous message.
* Here we post the main sends.
*/
static PetscErrorCode MatStashBTSSend_Private(MPI_Comm comm, const PetscMPIInt tag[], PetscMPIInt rankid, PetscMPIInt rank, void *sdata, MPI_Request req[], void *ctx)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnesfas.h90 petsc-3.18.5+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnesfas.h90
--- petsc-3.18.4+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnesfas.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnesfas.h90 2023-02-27 23:28:35.000000000 +0100
@@ -1,11 +1,11 @@
subroutine SNESFASCreateCoarseVec(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
end subroutine SNESFASCreateCoarseVec
subroutine SNESFASRestrict(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
@@ -104,25 +104,25 @@
PetscErrorCode z
end subroutine SNESFASCycleGetCorrection
subroutine SNESFASCycleGetInterpolation(a,b,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
Mat b ! Mat
PetscErrorCode z
end subroutine SNESFASCycleGetInterpolation
subroutine SNESFASCycleGetRestriction(a,b,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
Mat b ! Mat
PetscErrorCode z
end subroutine SNESFASCycleGetRestriction
subroutine SNESFASCycleGetInjection(a,b,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
Mat b ! Mat
PetscErrorCode z
end subroutine SNESFASCycleGetInjection
subroutine SNESFASCycleGetRScale(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
@@ -134,49 +134,49 @@
PetscErrorCode z
end subroutine SNESFASCycleIsFine
subroutine SNESFASSetInterpolation(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASSetInterpolation
subroutine SNESFASGetInterpolation(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASGetInterpolation
subroutine SNESFASSetRestriction(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASSetRestriction
subroutine SNESFASGetRestriction(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASGetRestriction
subroutine SNESFASSetInjection(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASSetInjection
subroutine SNESFASGetInjection(a,b,c,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine SNESFASGetInjection
subroutine SNESFASSetRScale(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Vec c ! Vec
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnes.h90 petsc-3.18.5+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnes.h90
--- petsc-3.18.4+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnes.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/f90-mod/ftn-auto-interfaces/petscsnes.h90 2023-02-27 23:28:35.000000000 +0100
@@ -57,7 +57,7 @@
PetscErrorCode z
end subroutine SNESMultiblockSetFields
subroutine SNESMultiblockSetIS(a,b,c,z)
- import tSNES,tIS
+ import tIS,tSNES
SNES a ! SNES
character b (*) ! char
IS c ! IS
@@ -88,7 +88,7 @@
PetscErrorCode z
end subroutine SNESNASMGetType
subroutine SNESNASMSetSubdomains(a,b,c,d,e,f,z)
- import tSNES,tVecScatter
+ import tVecScatter,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
SNES c (*) ! SNES
@@ -98,7 +98,7 @@
PetscErrorCode z
end subroutine SNESNASMSetSubdomains
subroutine SNESNASMGetSubdomains(a,b,c,d,e,f,z)
- import tSNES,tVecScatter
+ import tVecScatter,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
SNES c (*) ! SNES
@@ -108,7 +108,7 @@
PetscErrorCode z
end subroutine SNESNASMGetSubdomains
subroutine SNESNASMGetSubdomainVecs(a,b,c,d,e,f,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
PetscInt b ! PetscInt
Vec c ! Vec
@@ -149,7 +149,7 @@
PetscErrorCode z
end subroutine SNESNASMGetNumber
subroutine SNESNASMSetWeight(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
@@ -203,20 +203,20 @@
PetscErrorCode z
end subroutine SNESQNSetType
subroutine SNESVISetVariableBounds(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
PetscErrorCode z
end subroutine SNESVISetVariableBounds
subroutine SNESVIGetInactiveSet(a,b,z)
- import tSNES,tIS
+ import tIS,tSNES
SNES a ! SNES
IS b ! IS
PetscErrorCode z
end subroutine SNESVIGetInactiveSet
subroutine DMSetVI(a,b,z)
- import tIS,tDM
+ import tDM,tIS
DM a ! DM
IS b ! IS
PetscErrorCode z
@@ -382,7 +382,7 @@
PetscErrorCode z
end subroutine SNESSetCountersReset
subroutine SNESSetKSP(a,b,z)
- import tSNES,tKSP
+ import tKSP,tSNES
SNES a ! SNES
KSP b ! KSP
PetscErrorCode z
@@ -430,28 +430,28 @@
PetscErrorCode z
end subroutine SNESGetSolutionNorm
subroutine SNESComputeFunction(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
PetscErrorCode z
end subroutine SNESComputeFunction
subroutine SNESComputeMFFunction(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
PetscErrorCode z
end subroutine SNESComputeMFFunction
subroutine SNESComputeNGS(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
PetscErrorCode z
end subroutine SNESComputeNGS
subroutine SNESComputeJacobian(a,b,c,d,z)
- import tSNES,tMat,tVec
+ import tMat,tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Mat c ! Mat
@@ -610,26 +610,26 @@
PetscErrorCode z
end subroutine SNESConvergedReasonViewFromOptions
subroutine SNESSolve(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
PetscErrorCode z
end subroutine SNESSolve
subroutine SNESSetSolution(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
end subroutine SNESSetSolution
subroutine SNESGetSolution(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
end subroutine SNESGetSolution
subroutine SNESGetSolutionUpdate(a,b,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscErrorCode z
@@ -671,19 +671,19 @@
PetscErrorCode z
end subroutine SNESKSPGetParametersEW
subroutine SNESGetKSP(a,b,z)
- import tSNES,tKSP
+ import tKSP,tSNES
SNES a ! SNES
KSP b ! KSP
PetscErrorCode z
end subroutine SNESGetKSP
subroutine SNESSetDM(a,b,z)
- import tSNES,tDM
+ import tDM,tSNES
SNES a ! SNES
DM b ! DM
PetscErrorCode z
end subroutine SNESSetDM
subroutine SNESGetDM(a,b,z)
- import tSNES,tDM
+ import tDM,tSNES
SNES a ! SNES
DM b ! DM
PetscErrorCode z
@@ -731,7 +731,7 @@
PetscErrorCode z
end subroutine SNESGetLineSearch
subroutine SNESApplyNPC(a,b,c,d,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
Vec c ! Vec
@@ -739,7 +739,7 @@
PetscErrorCode z
end subroutine SNESApplyNPC
subroutine SNESGetNPCFunction(a,b,c,z)
- import tSNES,tVec
+ import tVec,tSNES
SNES a ! SNES
Vec b ! Vec
PetscReal c ! PetscReal
@@ -945,7 +945,7 @@
PetscErrorCode z
end subroutine SNESLineSearchSetReason
subroutine MatSNESMFGetSNES(a,b,z)
- import tSNES,tMat
+ import tMat,tSNES
Mat a ! Mat
SNES b ! SNES
PetscErrorCode z
@@ -963,7 +963,7 @@
PetscErrorCode z
end subroutine MatSNESMFGetReuseBase
subroutine MatCreateSNESMF(a,b,z)
- import tSNES,tMat
+ import tMat,tSNES
SNES a ! SNES
Mat b ! Mat
PetscErrorCode z
@@ -979,7 +979,7 @@
PetscErrorCode z
end subroutine PetscConvEstSetFromOptions
subroutine PetscConvEstView(a,b,z)
- import tPetscViewer,tPetscConvEst
+ import tPetscConvEst,tPetscViewer
PetscConvEst a ! PetscConvEst
PetscViewer b ! PetscViewer
PetscErrorCode z
@@ -1014,7 +1014,7 @@
PetscErrorCode z
end subroutine PetscConvEstGetConvRate
subroutine PetscConvEstRateView(a,b,c,z)
- import tPetscViewer,tPetscConvEst
+ import tPetscConvEst,tPetscViewer
PetscConvEst a ! PetscConvEst
PetscReal b (*) ! PetscReal
PetscViewer c ! PetscViewer
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/impls/fas/fasgalerkin.c petsc-3.18.5+dfsg1/src/snes/impls/fas/fasgalerkin.c
--- petsc-3.18.4+dfsg1/src/snes/impls/fas/fasgalerkin.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/impls/fas/fasgalerkin.c 2023-02-27 23:11:05.000000000 +0100
@@ -65,7 +65,7 @@
. F - output vector
Note:
- The Galerkin FAS function evalutation is defined as
+ The Galerkin FAS function evaluation is defined as
$ F^l(x^l) = I^l_0 F^0(P^0_l x^l)
Level: developer
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/impls/ngmres/snesngmres.c petsc-3.18.5+dfsg1/src/snes/impls/ngmres/snesngmres.c
--- petsc-3.18.4+dfsg1/src/snes/impls/ngmres/snesngmres.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/impls/ngmres/snesngmres.c 2023-02-27 23:11:05.000000000 +0100
@@ -384,7 +384,7 @@
+ snes - the iterative context
- rtype - restart type
- Options Databas Keys:
+ Options Database Keys:
+ -snes_ngmres_restart_type<difference,periodic,none> - set the restart type
- -snes_ngmres_restart[30] - sets the number of iterations before restart for periodic
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/impls/ntrdc/ntrdcimpl.h petsc-3.18.5+dfsg1/src/snes/impls/ntrdc/ntrdcimpl.h
--- petsc-3.18.4+dfsg1/src/snes/impls/ntrdc/ntrdcimpl.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/impls/ntrdc/ntrdcimpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -28,11 +28,11 @@
/* PetscReal *inorms; Heeho's new TR-dogleg, stores largest inf norm */
/* PetscInt bs; Heeho's new TR-dogleg, solution vector block size */
- PetscReal sigma; /* used to detemine termination */
+ PetscReal sigma; /* used to determine termination */
PetscBool itflag; /* flag for convergence testing */
PetscBool use_cauchy; /* flag to use/not use Cauchy step and direction (S&D) */
PetscBool auto_scale_multiphase; /* flag to use/not use autoscaling for Cauchy S&D for multiphase*/
- PetscReal auto_scale_max; /* max cap value for auto-scaling muste be > 1 */
+ PetscReal auto_scale_max; /* max cap value for auto-scaling must be > 1 */
PetscBool rho_satisfied; /* flag for whether inner iteration satisfied rho */
PetscReal rnorm0, ttol; /* used for KSP convergence test */
PetscErrorCode (*precheck)(SNES, Vec, Vec, PetscBool *, void *);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/impls/tr/trimpl.h petsc-3.18.5+dfsg1/src/snes/impls/tr/trimpl.h
--- petsc-3.18.4+dfsg1/src/snes/impls/tr/trimpl.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/impls/tr/trimpl.h 2023-02-27 23:11:05.000000000 +0100
@@ -17,7 +17,7 @@
PetscReal delta1; /* used to compute trust region parameter */
PetscReal delta2; /* used to compute trust region parameter */
PetscReal delta3; /* used to compute trust region parameter */
- PetscReal sigma; /* used to detemine termination */
+ PetscReal sigma; /* used to determine termination */
PetscBool itflag; /* flag for convergence testing */
PetscReal rnorm0, ttol; /* used for KSP convergence test */
PetscErrorCode (*precheck)(SNES, Vec, Vec, PetscBool *, void *);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tests/ex1.c petsc-3.18.5+dfsg1/src/snes/tests/ex1.c
--- petsc-3.18.4+dfsg1/src/snes/tests/ex1.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tests/ex1.c 2023-02-27 23:11:05.000000000 +0100
@@ -392,7 +392,7 @@
*/
PetscErrorCode FormJacobian(SNES snes, Vec X, Mat J, Mat jac, void *ptr)
{
- AppCtx *user = (AppCtx *)ptr; /* user-defined applicatin context */
+ AppCtx *user = (AppCtx *)ptr; /* user-defined application context */
PetscInt i, j, row, mx, my, col[5];
PetscScalar two = 2.0, one = 1.0, lambda, v[5], sc;
const PetscScalar *x;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex10d/ex10.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex10d/ex10.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex10d/ex10.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex10d/ex10.c 2023-02-27 23:11:05.000000000 +0100
@@ -591,7 +591,7 @@
/*
Now compute the f(x). As mentioned earlier, the computed Laplacian is just an
approximate one chosen for illustrative purpose only. Another point to notice
- is that this is a local (completly parallel) calculation. In practical application
+ is that this is a local (completely parallel) calculation. In practical application
codes, function calculation time is a dominat portion of the overall execution time.
*/
for (i = 0; i < Nvlocal; i++) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex12.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex12.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex12.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex12.c 2023-02-27 23:11:05.000000000 +0100
@@ -436,7 +436,7 @@
PetscCall(PetscOptionsEList("-bc_type", "Type of boundary condition", "ex12.c", bcTypes, 3, bcTypes[options->bcType], &bc, NULL));
options->bcType = (BCType)bc;
coeff = options->variableCoefficient;
- PetscCall(PetscOptionsEList("-variable_coefficient", "Type of variable coefficent", "ex12.c", coeffTypes, 8, coeffTypes[options->variableCoefficient], &coeff, NULL));
+ PetscCall(PetscOptionsEList("-variable_coefficient", "Type of variable coefficient", "ex12.c", coeffTypes, 8, coeffTypes[options->variableCoefficient], &coeff, NULL));
options->variableCoefficient = (CoeffType)coeff;
PetscCall(PetscOptionsBool("-field_bc", "Use a field representation for the BC", "ex12.c", options->fieldBC, &options->fieldBC, NULL));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex13.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex13.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex13.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex13.c 2023-02-27 23:11:05.000000000 +0100
@@ -14,7 +14,7 @@
PetscBool spectral; /* Look at the spectrum along planes in the solution */
PetscBool shear; /* Shear the domain */
PetscBool adjoint; /* Solve the adjoint problem */
- PetscBool homogeneous; /* Use homogeneous boudnary conditions */
+ PetscBool homogeneous; /* Use homogeneous boundary conditions */
PetscBool viewError; /* Output the solution error */
} AppCtx;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex16.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex16.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex16.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex16.c 2023-02-27 23:11:05.000000000 +0100
@@ -12,7 +12,7 @@
F is the deformation gradient, and S is the second Piola-Kirchhoff tensor from the Saint Venant-Kirchhoff model of
hyperelasticity. \Omega is a (arc) angle subsection of a cylindrical shell of thickness (height), inner radius
(rad) and width (width). The problem is discretized using Q1 finite elements on a logically structured grid.
- Homogenous Dirichlet boundary conditions are applied at the centers of the ends of the sphere.
+ Homogeneous Dirichlet boundary conditions are applied at the centers of the ends of the sphere.
This example is tunable with the following options:
-rad : the radius of the circle
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex19.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex19.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex19.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex19.c 2023-02-27 23:11:05.000000000 +0100
@@ -4,7 +4,7 @@
static char help[] = "Nonlinear driven cavity with multigrid in 2d.\n \
\n\
The 2D driven cavity problem is solved in a velocity-vorticity formulation.\n\
-The flow can be driven with the lid or with bouyancy or both:\n\
+The flow can be driven with the lid or with buoyancy or both:\n\
-lidvelocity <lid>, where <lid> = dimensionless velocity of lid\n\
-grashof <gr>, where <gr> = dimensionless temperature gradent\n\
-prandtl <pr>, where <pr> = dimensionless thermal/momentum diffusity ratio\n\
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex28.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex28.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex28.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex28.c 2023-02-27 23:11:05.000000000 +0100
@@ -470,10 +470,30 @@
nsize: 3
args: -u_da_grid_x 20 -snes_converged_reason -snes_monitor_short -problem_type 2
- test:
+ testset:
suffix: 3
nsize: 3
- args: -u_da_grid_x 20 -snes_converged_reason -snes_monitor_short -ksp_monitor_short -problem_type 2 -snes_mf_operator -pack_dm_mat_type {{aij nest}} -pc_type fieldsplit -pc_fieldsplit_dm_splits -pc_fieldsplit_type additive -fieldsplit_u_ksp_type gmres -fieldsplit_k_pc_type jacobi
+ output_file: output/ex28_3.out
+ args: -u_da_grid_x 20 -snes_converged_reason -snes_monitor_short -ksp_monitor_short -problem_type 2 -snes_mf_operator -pc_type fieldsplit -pc_fieldsplit_dm_splits -pc_fieldsplit_type additive -fieldsplit_u_ksp_type gmres -fieldsplit_k_pc_type jacobi
+
+ test:
+ suffix: std
+ args: -pack_dm_mat_type {{aij nest}}
+
+ test:
+ suffix: cuda
+ requires: cuda
+ args: -pack_dm_mat_type aijcusparse -pack_dm_vec_type cuda
+
+ test:
+ suffix: hip
+ requires: hip
+ args: -pack_dm_mat_type aijhipsparse -pack_dm_vec_type hip
+
+ test:
+ suffix: kok
+ requires: kokkos_kernels
+ args: -pack_dm_mat_type aijkokkos -pack_dm_vec_type kokkos
test:
suffix: 4
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex30.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex30.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex30.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex30.c 2023-02-27 23:11:05.000000000 +0100
@@ -78,7 +78,7 @@
PetscReal A, n, Estar, Vstar;
} ViscParam;
-typedef struct { /* physical and miscelaneous parameters */
+typedef struct { /* physical and miscellaneous parameters */
PetscReal width, depth, scaled_width, scaled_depth, peclet, potentialT;
PetscReal slab_dip, slab_age, slab_velocity, kappa, z_scale;
PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0, continuation;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex3.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex3.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex3.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex3.c 2023-02-27 23:11:05.000000000 +0100
@@ -68,7 +68,7 @@
} StepCheckCtx;
typedef struct {
- PetscInt its0; /* num of prevous outer KSP iterations */
+ PetscInt its0; /* num of previous outer KSP iterations */
} SetSubKSPCtx;
int main(int argc, char **argv)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex6.c petsc-3.18.5+dfsg1/src/snes/tutorials/ex6.c
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex6.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex6.c 2023-02-27 23:11:05.000000000 +0100
@@ -94,12 +94,12 @@
*/
PetscCall(PetscViewerASCIIGetStdout(comm, &monP.viewer));
/* Just make sure we can not repeat adding the same function
- * PETSc will be able to igore the repeated function
+ * PETSc will be able to ignore the repeated function
*/
for (i = 0; i < 4; i++) PetscCall(SNESConvergedReasonViewSet(snes, MySNESConvergedReasonView, &monP, 0));
PetscCall(SNESGetKSP(snes, &ksp));
/* Just make sure we can not repeat adding the same function
- * PETSc will be able to igore the repeated function
+ * PETSc will be able to ignore the repeated function
*/
for (i = 0; i < 4; i++) PetscCall(KSPConvergedReasonViewSet(ksp, MyKSPConvergedReasonView, &monP, 0));
/*
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/snes/tutorials/ex73f90t.F90 petsc-3.18.5+dfsg1/src/snes/tutorials/ex73f90t.F90
--- petsc-3.18.4+dfsg1/src/snes/tutorials/ex73f90t.F90 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/snes/tutorials/ex73f90t.F90 2023-02-27 23:11:05.000000000 +0100
@@ -242,7 +242,7 @@
PetscCallA(MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY,ierr))
! - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-! Set D (indentity)
+! Set D (identity)
! - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
do 30 j=lamlow,lamhigh-1
row(1) = j
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/bag/bag.c petsc-3.18.5+dfsg1/src/sys/classes/bag/bag.c
--- petsc-3.18.4+dfsg1/src/sys/classes/bag/bag.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/bag/bag.c 2023-02-27 23:11:05.000000000 +0100
@@ -664,7 +664,7 @@
while (nitem) {
if (nitem->dtype == PETSC_CHAR) {
char *value = (char *)(((char *)bag) + nitem->offset);
- char tmp = value[nitem->msize - 1]; /* special handling for fortran chars wihout null terminator */
+ char tmp = value[nitem->msize - 1]; /* special handling for fortran chars without null terminator */
value[nitem->msize - 1] = 0;
PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; %s\n", nitem->name, value, nitem->help));
value[nitem->msize - 1] = tmp;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/image/drawimage.h petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/image/drawimage.h
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/image/drawimage.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/image/drawimage.h 2023-02-27 23:11:05.000000000 +0100
@@ -151,7 +151,7 @@
}
#undef SWAP
- /* This code is decidely non-optimal;
+ /* This code is decidedly non-optimal;
it is intended to be a start at an implementation */
t2_t1 = t_2 - t_1;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/tikz/tikz.c petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/tikz/tikz.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/tikz/tikz.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/tikz/tikz.c 2023-02-27 23:11:05.000000000 +0100
@@ -74,7 +74,7 @@
PetscBool written;
PetscFunctionBegin;
- /* often PETSc generates unneeded clears, we want avoid creating empy pictures for them */
+ /* often PETSc generates unneeded clears, we want avoid creating empty pictures for them */
PetscCallMPI(MPI_Allreduce(&win->written, &written, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)(draw))));
if (!written) PetscFunctionReturn(0);
PetscCall(PetscFPrintf(PetscObjectComm((PetscObject)draw), win->fd, TikZ_END_FRAME));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/win32/win32draw.c petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/win32/win32draw.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/win32/win32draw.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/win32/win32draw.c 2023-02-27 23:11:05.000000000 +0100
@@ -34,7 +34,7 @@
unsigned char GreenMap[] = {255, 0, 0, 255, 255, 0, 0, 255, 139, 165, 130, 42, 182, 127, 190, 255, 215, 162, 197, 246, 105, 205, 206, 100, 0, 164, 245, 224, 17, 191, 205, 240};
unsigned char BlueMap[] = {255, 0, 0, 0, 255, 255, 225, 212, 34, 0, 238, 42, 193, 80, 190, 0, 0, 173, 205, 143, 105, 50, 235, 0, 128, 96, 255, 230, 120, 216, 50, 245};
-/* Foward declarations of functions included in this code module: */
+/* Forward declarations of functions included in this code module: */
LRESULT CALLBACK PetscWndProc(HWND, UINT, WPARAM, LPARAM);
static PetscErrorCode TranslateColor_Win32(PetscDraw, int);
static PetscErrorCode AverageColorRectangle_Win32(PetscDraw, int, int, int, int);
@@ -56,7 +56,7 @@
windraw->node->dbstore = SelectObject(windraw->node->DoubleBuffer, windraw->node->DoubleBufferBit);
/* Fill background of second buffer */
ExtFloodFill(windraw->node->DoubleBuffer, 0, 0, COLOR_WINDOW, FLOODFILLBORDER);
- /* Copy current buffer into seconf buffer and set window data as double buffered */
+ /* Copy current buffer into second buffer and set window data as double buffered */
BitBlt(windraw->node->DoubleBuffer, 0, 0, windraw->w, windraw->h, windraw->node->Buffer, 0, 0, SRCCOPY);
windraw->node->DoubleBuffered = PETSC_TRUE;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xcolor.c petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xcolor.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xcolor.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xcolor.c 2023-02-27 23:11:05.000000000 +0100
@@ -210,7 +210,7 @@
created.
The next layer is the colormap. The installation of colormaps is
- the buisness of the window manager (in some distant later release).
+ the business of the window manager (in some distant later release).
*/
/*
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xops.c petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xops.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xops.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xops.c 2023-02-27 23:11:05.000000000 +0100
@@ -670,7 +670,7 @@
/* initialize the display size */
if (!xmax) {
PetscCall(PetscDrawXGetDisplaySize_Private(draw->display, &xmax, &ymax, &has_display));
- /* if some processors fail on this and others succed then this is a problem ! */
+ /* if some processors fail on this and others succeed then this is a problem ! */
if (!has_display) {
(*PetscErrorPrintf)("PETSc unable to use X windows\nproceeding without graphics\n");
PetscCall(PetscDrawSetType(draw, PETSC_DRAW_NULL));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xtone.c petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xtone.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/impls/x/xtone.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/impls/x/xtone.c 2023-02-27 23:11:05.000000000 +0100
@@ -51,7 +51,7 @@
SWAP(t2, t3);
SWAP(x2, x3);
}
- /* This code is decidely non-optimal; it is intended to be a start at
+ /* This code is decidedly non-optimal; it is intended to be a start at
an implementation */
if (y2 != y_1) R_y2_y_1 = 1.0 / ((double)(y2 - y_1));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/utils/axisc.c petsc-3.18.5+dfsg1/src/sys/classes/draw/utils/axisc.c
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/utils/axisc.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/utils/axisc.c 2023-02-27 23:11:05.000000000 +0100
@@ -277,7 +277,7 @@
PetscDrawCollectiveBegin(draw);
if (rank) goto finally;
- /* get cannonical string size */
+ /* get canonical string size */
PetscCall(PetscDrawSetCoordinates(draw, 0, 0, 1, 1));
PetscCall(PetscDrawStringGetSize(draw, &tw, &th));
/* lower spacing */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/draw/utils/ftn-auto/makefile petsc-3.18.5+dfsg1/src/sys/classes/draw/utils/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/sys/classes/draw/utils/ftn-auto/makefile 2023-01-31 07:00:49.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/draw/utils/ftn-auto/makefile 2023-02-27 23:28:33.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = axiscf.c barsf.c dscatterf.c histsf.c lgf.c lgcf.c
+SOURCEC = barsf.c dscatterf.c histsf.c lgf.c lgcf.c axiscf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/random/impls/sprng/sprng.c petsc-3.18.5+dfsg1/src/sys/classes/random/impls/sprng/sprng.c
--- petsc-3.18.4+dfsg1/src/sys/classes/random/impls/sprng/sprng.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/random/impls/sprng/sprng.c 2023-02-27 23:11:05.000000000 +0100
@@ -50,7 +50,7 @@
};
/*MC
- PETSCSPRNG - access to the publically available random number generator sprng
+ PETSCSPRNG - access to the publicly available random number generator sprng
Options Database Keys:
. -random_type <rand,rand48,sprng> - select the random number generator at runtime
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/random/interface/ftn-auto/randomcf.c petsc-3.18.5+dfsg1/src/sys/classes/random/interface/ftn-auto/randomcf.c
--- petsc-3.18.4+dfsg1/src/sys/classes/random/interface/ftn-auto/randomcf.c 2023-01-31 07:00:49.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/random/interface/ftn-auto/randomcf.c 2023-02-27 23:28:33.000000000 +0100
@@ -54,7 +54,6 @@
*__ierr = PetscRandomSetFromOptions(
(PetscRandom)PetscToPointer((rnd) ));
}
-
PETSC_EXTERN void petscrandomcreate_(MPI_Fint * comm,PetscRandom *r, int *__ierr)
{
*__ierr = PetscRandomCreate(
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/random/interface/randomc.c petsc-3.18.5+dfsg1/src/sys/classes/random/interface/randomc.c
--- petsc-3.18.4+dfsg1/src/sys/classes/random/interface/randomc.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/random/interface/randomc.c 2023-02-27 23:11:05.000000000 +0100
@@ -148,7 +148,7 @@
. rnd - The random number generator context
Options Database Keys:
-+ -random_seed <integer> - provide a seed to the random number generater
++ -random_seed <integer> - provide a seed to the random number generator
- -random_no_imaginary_part - makes the imaginary part of the random number zero, this is useful when you want the
same code to produce the same result when run with real numbers or complex numbers for regression testing purposes
@@ -292,7 +292,7 @@
Collective
- Input Parameters:
+ Input Parameter:
. comm - MPI communicator
Output Parameter:
@@ -306,7 +306,7 @@
This is only a primitive "parallel" random number generator, it should NOT
be used for sophisticated parallel Monte Carlo methods since it will very likely
not have the correct statistics across processors. You can provide your own
- parallel generator using PetscRandomRegister();
+ parallel generator using `PetscRandomRegister()`;
If you create a `PetscRandom()` using `PETSC_COMM_SELF` on several processors then
the SAME random numbers will be generated on all those processors. Use `PETSC_COMM_WORLD`
@@ -326,7 +326,6 @@
.seealso: `PetscRandomSetType()`, `PetscRandomGetValue()`, `PetscRandomGetValueReal()`, `PetscRandomSetInterval()`,
`PetscRandomDestroy()`, `VecSetRandom()`, `PetscRandomType`, `PetscRandom`
@*/
-
PetscErrorCode PetscRandomCreate(MPI_Comm comm, PetscRandom *r)
{
PetscRandom rr;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/random/tests/ex3.c petsc-3.18.5+dfsg1/src/sys/classes/random/tests/ex3.c
--- petsc-3.18.4+dfsg1/src/sys/classes/random/tests/ex3.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/random/tests/ex3.c 2023-02-27 23:11:05.000000000 +0100
@@ -99,7 +99,7 @@
PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &Y, 1, MPIU_INT, MPI_SUM, MPI_COMM_WORLD));
PetscCall(PoissonTailProbability(N * lambda, Y, &p));
- PetscCall(PetscPrintf(PETSC_COMM_WORLD, "%" PetscInt_FMT " total collisions counted: that many or more should occur with probabilty %g.\n", Y, (double)p));
+ PetscCall(PetscPrintf(PETSC_COMM_WORLD, "%" PetscInt_FMT " total collisions counted: that many or more should occur with probability %g.\n", Y, (double)p));
PetscCall(PetscFree(X));
PetscCall(PetscRandomDestroy(&random));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/random/tests/output/ex3_1.out petsc-3.18.5+dfsg1/src/sys/classes/random/tests/output/ex3_1.out
--- petsc-3.18.4+dfsg1/src/sys/classes/random/tests/output/ex3_1.out 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/classes/random/tests/output/ex3_1.out 2023-02-27 23:11:05.000000000 +0100
@@ -3,4 +3,4 @@
PetscRandom Object: 1 MPI process
type: rander48
[0] Random type rander48, seed 305419896
-1 total collisions counted: that many or more should occur with probabilty 0.632121.
+1 total collisions counted: that many or more should occur with probability 0.632121.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/glvis/glvis.c petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/glvis/glvis.c
--- petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/glvis/glvis.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/glvis/glvis.c 2023-02-27 23:11:05.000000000 +0100
@@ -216,7 +216,7 @@
PetscFunctionBegin;
PetscCall(PetscViewerASCIISocketOpen(PETSC_COMM_SELF, socket->name, socket->port, &window));
- /* if we could not estabilish a connection, we disable the socket viewer on all MPI ranks */
+ /* if we could not establish a connection, we disable the socket viewer on all MPI ranks */
ldis = !viewer ? PETSC_TRUE : PETSC_FALSE;
PetscCall(MPIU_Allreduce(&ldis, &dis, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)viewer)));
if (dis) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/hdf5/hdf5v.c petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/hdf5/hdf5v.c
--- petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/hdf5/hdf5v.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/hdf5/hdf5v.c 2023-02-27 23:11:05.000000000 +0100
@@ -611,7 +611,7 @@
FILE_MODE_UPDATE - same as FILE_MODE_APPEND
.ve
- In case of `FILE_MODE_APPEND` / `FILE_MODE_UPDATE`, any stored object (dataset, attribute) can be selectively ovewritten if the same fully qualified name (/group/path/to/object) is specified.
+ In case of `FILE_MODE_APPEND` / `FILE_MODE_UPDATE`, any stored object (dataset, attribute) can be selectively overwritten if the same fully qualified name (/group/path/to/object) is specified.
This PetscViewer should be destroyed with PetscViewerDestroy().
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/string/stringv.c petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/string/stringv.c
--- petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/string/stringv.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/string/stringv.c 2023-02-27 23:11:05.000000000 +0100
@@ -5,7 +5,7 @@
char *string; /* string where info is stored */
char *head; /* pointer to beginning of unused portion */
size_t curlen, maxlen;
- PetscBool ownstring; /* string viewer is responsable for freeing the string */
+ PetscBool ownstring; /* string viewer is responsible for freeing the string */
} PetscViewer_String;
static PetscErrorCode PetscViewerDestroy_String(PetscViewer viewer)
@@ -189,7 +189,7 @@
Note:
The function does not copy the string, it uses it directly therefore you cannot free
the string until the viewer is destroyed. If you call `PetscViewerStringSetOwnString()` the ownership
- passes to the viewer and it will be responsable for freeing it. In this case the string must be
+ passes to the viewer and it will be responsible for freeing it. In this case the string must be
obtained with `PetscMalloc()`.
.seealso: [](sec_viewers), `PetscViewerStringOpen()`, `PETSCVIEWERSTRING`, `PetscViewerStringGetStringRead()`, `PetscViewerStringSPrintf()`,
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/vtk/vtkv.c petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/vtk/vtkv.c
--- petsc-3.18.4+dfsg1/src/sys/classes/viewer/impls/vtk/vtkv.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/classes/viewer/impls/vtk/vtkv.c 2023-02-27 23:11:05.000000000 +0100
@@ -25,7 +25,7 @@
+ viewer - `PETSCVIEWERVTK`
. dm - `DM` on which `Vec` lives
. PetscViewerVTKWriteFunction - function to write this `Vec`
-. fieldnum - which field of the DM to write (`PETSC_DEFAULT` if the whle vector should be written)
+. fieldnum - which field of the DM to write (`PETSC_DEFAULT` if the while vector should be written)
. fieldtype - Either `PETSC_VTK_POINT_FIELD` or `PETSC_VTK_CELL_FIELD`
. checkdm - whether to check for identical dm arguments as fields are added
- vec - `Vec` from which to write
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/dll/dl.c petsc-3.18.5+dfsg1/src/sys/dll/dl.c
--- petsc-3.18.4+dfsg1/src/sys/dll/dl.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/dll/dl.c 2023-02-27 23:11:05.000000000 +0100
@@ -290,7 +290,7 @@
}
/*@C
- PetscDLLibraryAppend - Appends another dynamic link library to the seach list, to the end
+ PetscDLLibraryAppend - Appends another dynamic link library to the search list, to the end
of the search path.
Collective
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscdraw.h90 petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscdraw.h90
--- petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscdraw.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscdraw.h90 2023-02-27 23:28:35.000000000 +0100
@@ -281,47 +281,6 @@
PetscDraw a ! PetscDraw
PetscErrorCode z
end subroutine PetscDrawSplitViewPort
- subroutine PetscDrawAxisCreate(a,b,z)
- PetscDraw a ! PetscDraw
- PetscDrawAxis b ! PetscDrawAxis
- PetscErrorCode z
- end subroutine PetscDrawAxisCreate
- subroutine PetscDrawAxisDestroy(a,z)
- PetscDrawAxis a ! PetscDrawAxis
- PetscErrorCode z
- end subroutine PetscDrawAxisDestroy
- subroutine PetscDrawAxisSetColors(a,b,c,d,z)
- PetscDrawAxis a ! PetscDrawAxis
- integer b ! int
- integer c ! int
- integer d ! int
- PetscErrorCode z
- end subroutine PetscDrawAxisSetColors
- subroutine PetscDrawAxisSetLimits(a,b,c,d,e,z)
- PetscDrawAxis a ! PetscDrawAxis
- PetscReal b ! PetscReal
- PetscReal c ! PetscReal
- PetscReal d ! PetscReal
- PetscReal e ! PetscReal
- PetscErrorCode z
- end subroutine PetscDrawAxisSetLimits
- subroutine PetscDrawAxisGetLimits(a,b,c,d,e,z)
- PetscDrawAxis a ! PetscDrawAxis
- PetscReal b ! PetscReal
- PetscReal c ! PetscReal
- PetscReal d ! PetscReal
- PetscReal e ! PetscReal
- PetscErrorCode z
- end subroutine PetscDrawAxisGetLimits
- subroutine PetscDrawAxisSetHoldLimits(a,b,z)
- PetscDrawAxis a ! PetscDrawAxis
- PetscBool b ! PetscBool
- PetscErrorCode z
- end subroutine PetscDrawAxisSetHoldLimits
- subroutine PetscDrawAxisDraw(a,z)
- PetscDrawAxis a ! PetscDrawAxis
- PetscErrorCode z
- end subroutine PetscDrawAxisDraw
subroutine PetscDrawBarDraw(a,z)
PetscDrawBar a ! PetscDrawBar
PetscErrorCode z
@@ -547,3 +506,44 @@
PetscDrawLG a ! PetscDrawLG
PetscErrorCode z
end subroutine PetscDrawLGSetFromOptions
+ subroutine PetscDrawAxisCreate(a,b,z)
+ PetscDraw a ! PetscDraw
+ PetscDrawAxis b ! PetscDrawAxis
+ PetscErrorCode z
+ end subroutine PetscDrawAxisCreate
+ subroutine PetscDrawAxisDestroy(a,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ PetscErrorCode z
+ end subroutine PetscDrawAxisDestroy
+ subroutine PetscDrawAxisSetColors(a,b,c,d,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ integer b ! int
+ integer c ! int
+ integer d ! int
+ PetscErrorCode z
+ end subroutine PetscDrawAxisSetColors
+ subroutine PetscDrawAxisSetLimits(a,b,c,d,e,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ PetscReal b ! PetscReal
+ PetscReal c ! PetscReal
+ PetscReal d ! PetscReal
+ PetscReal e ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscDrawAxisSetLimits
+ subroutine PetscDrawAxisGetLimits(a,b,c,d,e,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ PetscReal b ! PetscReal
+ PetscReal c ! PetscReal
+ PetscReal d ! PetscReal
+ PetscReal e ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscDrawAxisGetLimits
+ subroutine PetscDrawAxisSetHoldLimits(a,b,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ PetscBool b ! PetscBool
+ PetscErrorCode z
+ end subroutine PetscDrawAxisSetHoldLimits
+ subroutine PetscDrawAxisDraw(a,z)
+ PetscDrawAxis a ! PetscDrawAxis
+ PetscErrorCode z
+ end subroutine PetscDrawAxisDraw
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90 petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90
--- petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90 2023-02-27 23:28:35.000000000 +0100
@@ -212,31 +212,6 @@
PetscBool c ! PetscBool
PetscErrorCode z
end subroutine PetscObjectCompareId
- subroutine PetscObjectSetPrintedOptions(a,z)
- PetscObject a ! PetscObject
- PetscErrorCode z
- end subroutine PetscObjectSetPrintedOptions
- subroutine PetscObjectInheritPrintedOptions(a,b,z)
- PetscObject a ! PetscObject
- PetscObject b ! PetscObject
- PetscErrorCode z
- end subroutine PetscObjectInheritPrintedOptions
- subroutine PetscObjectSetFromOptions(a,z)
- PetscObject a ! PetscObject
- PetscErrorCode z
- end subroutine PetscObjectSetFromOptions
- subroutine PetscObjectSetUp(a,z)
- PetscObject a ! PetscObject
- PetscErrorCode z
- end subroutine PetscObjectSetUp
- subroutine PetscInitialized(a,z)
- PetscBool a ! PetscBool
- PetscErrorCode z
- end subroutine PetscInitialized
- subroutine PetscFinalized(a,z)
- PetscBool a ! PetscBool
- PetscErrorCode z
- end subroutine PetscFinalized
subroutine PetscSubcommSetFromOptions(a,z)
import tPetscSubcomm
PetscSubcomm a ! PetscSubcomm
@@ -277,10 +252,6 @@
PetscMPIInt b ! PetscMPIInt
PetscErrorCode z
end subroutine PetscCommGetNewTag
- subroutine PetscObjectDestroy(a,z)
- PetscObject a ! PetscObject
- PetscErrorCode z
- end subroutine PetscObjectDestroy
subroutine PetscObjectGetTabLevel(a,b,z)
PetscObject a ! PetscObject
PetscInt b ! PetscInt
@@ -326,6 +297,35 @@
PetscOptions a ! PetscOptions
PetscErrorCode z
end subroutine PetscOptionsLeft
+ subroutine PetscObjectDestroy(a,z)
+ PetscObject a ! PetscObject
+ PetscErrorCode z
+ end subroutine PetscObjectDestroy
+ subroutine PetscObjectSetPrintedOptions(a,z)
+ PetscObject a ! PetscObject
+ PetscErrorCode z
+ end subroutine PetscObjectSetPrintedOptions
+ subroutine PetscObjectInheritPrintedOptions(a,b,z)
+ PetscObject a ! PetscObject
+ PetscObject b ! PetscObject
+ PetscErrorCode z
+ end subroutine PetscObjectInheritPrintedOptions
+ subroutine PetscObjectSetFromOptions(a,z)
+ PetscObject a ! PetscObject
+ PetscErrorCode z
+ end subroutine PetscObjectSetFromOptions
+ subroutine PetscObjectSetUp(a,z)
+ PetscObject a ! PetscObject
+ PetscErrorCode z
+ end subroutine PetscObjectSetUp
+ subroutine PetscInitialized(a,z)
+ PetscBool a ! PetscBool
+ PetscErrorCode z
+ end subroutine PetscInitialized
+ subroutine PetscFinalized(a,z)
+ PetscBool a ! PetscBool
+ PetscErrorCode z
+ end subroutine PetscFinalized
subroutine PetscElementalInitializePackage(z)
PetscErrorCode z
end subroutine PetscElementalInitializePackage
@@ -354,25 +354,6 @@
PetscReal a ! PetscReal
PetscErrorCode z
end subroutine PetscSleep
- subroutine PetscSplitOwnershipBlock(a,b,c,d,z)
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscInt d ! PetscInt
- PetscErrorCode z
- end subroutine PetscSplitOwnershipBlock
- subroutine PetscSplitOwnership(a,b,c,z)
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscErrorCode z
- end subroutine PetscSplitOwnership
- subroutine PetscSplitOwnershipEqual(a,b,c,z)
- MPI_Comm a ! MPI_Comm
- PetscInt b ! PetscInt
- PetscInt c ! PetscInt
- PetscErrorCode z
- end subroutine PetscSplitOwnershipEqual
subroutine PetscSortedReal(a,b,c,z)
PetscInt a ! PetscInt
PetscReal b (*) ! PetscReal
@@ -417,6 +398,80 @@
PetscInt d (*) ! PetscInt
PetscErrorCode z
end subroutine PetscSortSplitReal
+ subroutine PetscSortIntWithPermutation(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscInt b (*) ! PetscInt
+ PetscInt c (*) ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscSortIntWithPermutation
+ subroutine PetscSortRealWithPermutation(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscReal b (*) ! PetscReal
+ PetscInt c (*) ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscSortRealWithPermutation
+ subroutine PetscIntSortSemiOrdered(a,b,z)
+ PetscInt a ! PetscInt
+ PetscInt b (*) ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscIntSortSemiOrdered
+ subroutine PetscIntSortSemiOrderedWithArray(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscInt b (*) ! PetscInt
+ PetscInt c (*) ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscIntSortSemiOrderedWithArray
+ subroutine PetscMPIIntSortSemiOrdered(a,b,z)
+ PetscInt a ! PetscInt
+ PetscMPIInt b (*) ! PetscMPIInt
+ PetscErrorCode z
+ end subroutine PetscMPIIntSortSemiOrdered
+ subroutine PetscMPIIntSortSemiOrderedWithArray(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscMPIInt b (*) ! PetscMPIInt
+ PetscMPIInt c (*) ! PetscMPIInt
+ PetscErrorCode z
+ end subroutine PetscMPIIntSortSemiOrderedWithArray
+ subroutine PetscRealSortSemiOrdered(a,b,z)
+ PetscInt a ! PetscInt
+ PetscReal b (*) ! PetscReal
+ PetscErrorCode z
+ end subroutine PetscRealSortSemiOrdered
+ subroutine PetscRealSortSemiOrderedWithArrayInt(a,b,c,z)
+ PetscInt a ! PetscInt
+ PetscReal b (*) ! PetscReal
+ PetscInt c (*) ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscRealSortSemiOrderedWithArrayInt
+ subroutine PetscSequentialPhaseBegin(a,b,z)
+ MPI_Comm a ! MPI_Comm
+ integer b ! int
+ PetscErrorCode z
+ end subroutine PetscSequentialPhaseBegin
+ subroutine PetscSequentialPhaseEnd(a,b,z)
+ MPI_Comm a ! MPI_Comm
+ integer b ! int
+ PetscErrorCode z
+ end subroutine PetscSequentialPhaseEnd
+ subroutine PetscSplitOwnershipBlock(a,b,c,d,z)
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscInt d ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscSplitOwnershipBlock
+ subroutine PetscSplitOwnership(a,b,c,z)
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscSplitOwnership
+ subroutine PetscSplitOwnershipEqual(a,b,c,z)
+ MPI_Comm a ! MPI_Comm
+ PetscInt b ! PetscInt
+ PetscInt c ! PetscInt
+ PetscErrorCode z
+ end subroutine PetscSplitOwnershipEqual
subroutine PetscSortedInt(a,b,c,z)
PetscInt a ! PetscInt
PetscInt b (*) ! PetscInt
@@ -582,58 +637,3 @@
PetscBool d ! PetscBool
PetscErrorCode z
end subroutine PetscParallelSortedInt
- subroutine PetscSortIntWithPermutation(a,b,c,z)
- PetscInt a ! PetscInt
- PetscInt b (*) ! PetscInt
- PetscInt c (*) ! PetscInt
- PetscErrorCode z
- end subroutine PetscSortIntWithPermutation
- subroutine PetscSortRealWithPermutation(a,b,c,z)
- PetscInt a ! PetscInt
- PetscReal b (*) ! PetscReal
- PetscInt c (*) ! PetscInt
- PetscErrorCode z
- end subroutine PetscSortRealWithPermutation
- subroutine PetscIntSortSemiOrdered(a,b,z)
- PetscInt a ! PetscInt
- PetscInt b (*) ! PetscInt
- PetscErrorCode z
- end subroutine PetscIntSortSemiOrdered
- subroutine PetscIntSortSemiOrderedWithArray(a,b,c,z)
- PetscInt a ! PetscInt
- PetscInt b (*) ! PetscInt
- PetscInt c (*) ! PetscInt
- PetscErrorCode z
- end subroutine PetscIntSortSemiOrderedWithArray
- subroutine PetscMPIIntSortSemiOrdered(a,b,z)
- PetscInt a ! PetscInt
- PetscMPIInt b (*) ! PetscMPIInt
- PetscErrorCode z
- end subroutine PetscMPIIntSortSemiOrdered
- subroutine PetscMPIIntSortSemiOrderedWithArray(a,b,c,z)
- PetscInt a ! PetscInt
- PetscMPIInt b (*) ! PetscMPIInt
- PetscMPIInt c (*) ! PetscMPIInt
- PetscErrorCode z
- end subroutine PetscMPIIntSortSemiOrderedWithArray
- subroutine PetscRealSortSemiOrdered(a,b,z)
- PetscInt a ! PetscInt
- PetscReal b (*) ! PetscReal
- PetscErrorCode z
- end subroutine PetscRealSortSemiOrdered
- subroutine PetscRealSortSemiOrderedWithArrayInt(a,b,c,z)
- PetscInt a ! PetscInt
- PetscReal b (*) ! PetscReal
- PetscInt c (*) ! PetscInt
- PetscErrorCode z
- end subroutine PetscRealSortSemiOrderedWithArrayInt
- subroutine PetscSequentialPhaseBegin(a,b,z)
- MPI_Comm a ! MPI_Comm
- integer b ! int
- PetscErrorCode z
- end subroutine PetscSequentialPhaseBegin
- subroutine PetscSequentialPhaseEnd(a,b,z)
- MPI_Comm a ! MPI_Comm
- integer b ! int
- PetscErrorCode z
- end subroutine PetscSequentialPhaseEnd
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscviewer.h90 petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscviewer.h90
--- petsc-3.18.4+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscviewer.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/f90-mod/ftn-auto-interfaces/petscviewer.h90 2023-02-27 23:28:35.000000000 +0100
@@ -252,13 +252,13 @@
PetscErrorCode z
end subroutine PetscViewerMathematicaClearName
subroutine PetscViewerMathematicaGetVector(a,b,z)
- import tPetscViewer,tVec
+ import tVec,tPetscViewer
PetscViewer a ! PetscViewer
Vec b ! Vec
PetscErrorCode z
end subroutine PetscViewerMathematicaGetVector
subroutine PetscViewerMathematicaPutVector(a,b,z)
- import tPetscViewer,tVec
+ import tVec,tPetscViewer
PetscViewer a ! PetscViewer
Vec b ! Vec
PetscErrorCode z
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/fileio/apple_fdir.h petsc-3.18.5+dfsg1/src/sys/fileio/apple_fdir.h
--- petsc-3.18.4+dfsg1/src/sys/fileio/apple_fdir.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/fileio/apple_fdir.h 2023-02-27 23:11:05.000000000 +0100
@@ -31,7 +31,7 @@
* the template.
*
* If the desired path was found, set result and return FTPP_DONE.
- * If an IO/FS error ocurred, set errno and return FTPP_ERROR.
+ * If an IO/FS error occurred, set errno and return FTPP_ERROR.
* Otherwise return FTPP_TRY_NEXT.
*/
typedef find_temp_path_progress_t (*find_temp_path_action_t)(int dfd, char *path, void *ctx, void *result);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/fileio/ghome.c petsc-3.18.5+dfsg1/src/sys/fileio/ghome.c
--- petsc-3.18.4+dfsg1/src/sys/fileio/ghome.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/fileio/ghome.c 2023-02-27 23:11:05.000000000 +0100
@@ -10,7 +10,7 @@
Not Collective
Input Parameter:
-. maxlen - maximum lengh allowed
+. maxlen - maximum length allowed
Output Parameter:
. dir - contains the home directory. Must be long enough to hold the name.
@@ -20,7 +20,7 @@
Notes:
If PETSc cannot determine the home directory it makes dir a null string
- On Windows machines the enviornmental variable `HOME` specifies the home directory.
+ On Windows machines the environmental variable `HOME` specifies the home directory.
.seealso: `PetscGetTmp()`, `PetscSharedTmp()`, `PetscGetWorkingDirectory()`
@*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/fileio/mprint.c petsc-3.18.5+dfsg1/src/sys/fileio/mprint.c
--- petsc-3.18.4+dfsg1/src/sys/fileio/mprint.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/fileio/mprint.c 2023-02-27 23:11:05.000000000 +0100
@@ -1,5 +1,5 @@
/*
- Utilites routines to add simple ASCII IO capability.
+ Utilities routines to add simple ASCII IO capability.
*/
#include <../src/sys/fileio/mprint.h>
#include <errno.h>
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/logging/plog.c petsc-3.18.5+dfsg1/src/sys/logging/plog.c
--- petsc-3.18.4+dfsg1/src/sys/logging/plog.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/logging/plog.c 2023-02-27 23:11:05.000000000 +0100
@@ -2067,7 +2067,7 @@
Level: beginner
Notes:
- It is possible to control the logging programatically but we recommend using the options database approach whenever possible
+ It is possible to control the logging programmatically but we recommend using the options database approach whenever possible
By default the summary is printed to stdout.
Before calling this routine you must have called either PetscLogDefaultBegin() or PetscLogNestedBegin()
@@ -2375,7 +2375,7 @@
This timer should NOT include times for data transfers between the GPU and CPU, nor setup actions such as allocating space.
- The regular logging captures the time for data transfers and any CPU activites during the event
+ The regular logging captures the time for data transfers and any CPU activities during the event
It is used to compute the flop rate on the GPU as it is actively engaged in running a kernel.
@@ -2384,7 +2384,7 @@
`PetscLogGpuTimeBegin()` and `PetsLogGpuTimeEnd()` insert the begin and end events into the default stream (stream 0). The device will record a time stamp for the
event when it reaches that event in the stream. The function xxxEventSynchronize() is called in `PetsLogGpuTimeEnd()` to block CPU execution,
- but not continued GPU excution, until the timer event is recorded.
+ but not continued GPU execution, until the timer event is recorded.
.seealso: [](ch_profiling), `PetscLogView()`, `PetscLogGpuFlops()`, `PetscLogGpuTimeEnd()`, `PetscLogGpuTime()`
@*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/memory/mtr.c petsc-3.18.5+dfsg1/src/sys/memory/mtr.c
--- petsc-3.18.4+dfsg1/src/sys/memory/mtr.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/memory/mtr.c 2023-02-27 23:11:05.000000000 +0100
@@ -361,7 +361,7 @@
*result = NULL;
PetscFunctionReturn(0);
}
- /* If the orginal space was NULL just use the regular malloc() */
+ /* If the original space was NULL just use the regular malloc() */
if (!*result) {
PetscCall(PetscTrMallocDefault(len, PETSC_FALSE, lineno, function, filename, result));
PetscFunctionReturn(0);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/mpiuni/mpi.c petsc-3.18.5+dfsg1/src/sys/mpiuni/mpi.c
--- petsc-3.18.4+dfsg1/src/sys/mpiuni/mpi.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/mpiuni/mpi.c 2023-02-27 23:11:05.000000000 +0100
@@ -582,7 +582,7 @@
#define petsc_mpi_exscan_ petsc_mpi_exscan__
#endif
-/* Do not build fortran interface if MPI namespace colision is to be avoided */
+/* Do not build fortran interface if MPI namespace collision is to be avoided */
#if defined(PETSC_HAVE_FORTRAN)
PETSC_EXTERN void mpiunisetmoduleblock_(void);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/cxx/elemental.cxx petsc-3.18.5+dfsg1/src/sys/objects/cxx/elemental.cxx
--- petsc-3.18.4+dfsg1/src/sys/objects/cxx/elemental.cxx 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/objects/cxx/elemental.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -11,7 +11,7 @@
Note:
Can be called outside of `PetscInitialize()` and `PetscFinalize()`.
- If called outside of these functions, it is the user's responsability
+ If called outside of these functions, it is the user's responsibility
to make sure that `PETSC_COMM_WORLD` is either unset (default value is `MPI_COMM_NULL`),
or that it is not `MPI_UNEQUAL` to `MPI_COMM_WORLD`.
Users who do not have a custom `PETSC_COMM_WORLD` do not have to call this function.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/destroy.c petsc-3.18.5+dfsg1/src/sys/objects/destroy.c
--- petsc-3.18.4+dfsg1/src/sys/objects/destroy.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/destroy.c 2023-02-27 23:11:05.000000000 +0100
@@ -174,7 +174,7 @@
Input Parameters:
+ obj1 - any PETSc object, for example a Vec, Mat or KSP.
-- obj2 - anther PETSc object
+- obj2 - another PETSc object
Output Parameter:
. same - PETSC_TRUE if they are the same, else PETSC_FALSE
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/device/impls/cupm/cupmcontext.hpp petsc-3.18.5+dfsg1/src/sys/objects/device/impls/cupm/cupmcontext.hpp
--- petsc-3.18.4+dfsg1/src/sys/objects/device/impls/cupm/cupmcontext.hpp 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/device/impls/cupm/cupmcontext.hpp 2023-02-27 23:11:05.000000000 +0100
@@ -456,15 +456,21 @@
PetscFunctionBegin;
// can't use PetscCUPMMemcpyAsync here since we don't know sizeof(*src)...
if (mode == PETSC_DEVICE_COPY_HTOH) {
+ const auto cerr = cupmStreamQuery(stream);
+
// yes this is faster
- if (cupmStreamQuery(stream) == cupmSuccess) {
+ if (cerr == cupmSuccess) {
PetscCall(PetscMemcpy(dest, src, n));
PetscFunctionReturn(0);
+ } else if (cerr == cupmErrorNotReady) {
+ auto PETSC_UNUSED unused = cupmGetLastError();
+
+ static_cast<void>(unused);
+ } else {
+ PetscCallCUPM(cerr);
}
- // in case cupmStreamQuery() did not return cupmErrorNotReady
- PetscCallCUPM(cupmGetLastError());
}
- PetscCall(cupmMemcpyAsync(dest, src, n, PetscDeviceCopyModeToCUPMMemcpyKind(mode), stream));
+ PetscCallCUPM(cupmMemcpyAsync(dest, src, n, PetscDeviceCopyModeToCUPMMemcpyKind(mode), stream));
PetscFunctionReturn(0);
}
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/device/interface/dcontext.cxx petsc-3.18.5+dfsg1/src/sys/objects/device/interface/dcontext.cxx
--- petsc-3.18.4+dfsg1/src/sys/objects/device/interface/dcontext.cxx 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/device/interface/dcontext.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -112,7 +112,7 @@
`dctx`'s stream the user is responsible for calling `PetscDeviceContextSynchronize()` before
calling this routine.
- DAG represetation:
+ DAG representation:
.vb
time ->
@@ -271,7 +271,7 @@
Notes:
This routine is effectively `PetscDeviceContext`'s "set-type" (so every `PetscDeviceContext` must
- also have an attached `PetscDevice`). Unlike the usual set-type semantics, it is not stricly
+ also have an attached `PetscDevice`). Unlike the usual set-type semantics, it is not strictly
necessary to set a contexts device to enable usage, any created `PetscDeviceContext`s will
always come equipped with the "default" device.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/device/interface/device.cxx petsc-3.18.5+dfsg1/src/sys/objects/device/interface/device.cxx
--- petsc-3.18.4+dfsg1/src/sys/objects/device/interface/device.cxx 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/device/interface/device.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -360,7 +360,7 @@
static std::array<std::pair<PetscDevice, bool>, PETSC_DEVICE_MAX> defaultDevices = {};
/*
- Actual intialization function; any functions claiming to initialize PetscDevice or
+ Actual initialization function; any functions claiming to initialize PetscDevice or
PetscDeviceContext will have to run through this one
*/
static PetscErrorCode PetscDeviceInitializeDefaultDevice_Internal(PetscDeviceType type, PetscInt defaultDeviceId)
@@ -454,7 +454,7 @@
Notes:
Since different attributes are often different types `value` is a `void *` to accommodate
them all. The underlying type of the attribute is therefore included in the name of the
- `PetscDeviceAttribute` reponsible for querying it. For example,
+ `PetscDeviceAttribute` responsible for querying it. For example,
`PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK` is of type `size_t`.
Level: intermediate
@@ -521,7 +521,7 @@
if (initIdx == PETSC_DEVICE_INIT_NONE) {
/* disabled all device initialization if devices are globally disabled */
- PetscCheck(*defaultDevice == PETSC_DECIDE, comm, PETSC_ERR_USER_INPUT, "You have disabled devices but also specified a particular device to use, these options are mutually exlusive");
+ PetscCheck(*defaultDevice == PETSC_DECIDE, comm, PETSC_ERR_USER_INPUT, "You have disabled devices but also specified a particular device to use, these options are mutually exclusive");
*defaultView = PETSC_FALSE;
initDeviceIdx = PETSC_DEVICE_HOST;
} else {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/device/interface/global_dcontext.cxx petsc-3.18.5+dfsg1/src/sys/objects/device/interface/global_dcontext.cxx
--- petsc-3.18.4+dfsg1/src/sys/objects/device/interface/global_dcontext.cxx 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/objects/device/interface/global_dcontext.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -5,7 +5,7 @@
static PetscDeviceContext globalContext = nullptr;
/* when PetsDevice initializes PetscDeviceContext eagerly the type of device created should
- * match whatever device is eagerly intialized */
+ * match whatever device is eagerly initialized */
PetscErrorCode PetscDeviceContextSetRootDeviceType_Internal(PetscDeviceType type)
{
PetscFunctionBegin;
@@ -100,7 +100,7 @@
Notes:
This routine can be used to set the defacto "root" `PetscDeviceContext` to a user-defined
implementation by calling this routine immediately after `PetscInitialize()` and ensuring that
- `PetscDevice` is not greedily intialized. In this case the user is responsible for destroying
+ `PetscDevice` is not greedily initialized. In this case the user is responsible for destroying
their `PetscDeviceContext` before `PetscFinalize()` returns.
The old context is not stored in any way by this routine; if one is overriding a context that
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/device/interface/memory.cxx petsc-3.18.5+dfsg1/src/sys/objects/device/interface/memory.cxx
--- petsc-3.18.4+dfsg1/src/sys/objects/device/interface/memory.cxx 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/device/interface/memory.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -34,7 +34,7 @@
std::size_t size = 0; // size of allocation (bytes)
// even though this is a POD and can be aggregate initialized, the STL uses () constructors
- // in unordered_map and so we need to provide a trivial contructor...
+ // in unordered_map and so we need to provide a trivial constructor...
constexpr PointerAttributes(PetscMemType, PetscObjectId, std::size_t) noexcept;
bool operator==(const PointerAttributes &) const noexcept;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/ftn-auto/makefile petsc-3.18.5+dfsg1/src/sys/objects/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/sys/objects/ftn-auto/makefile 2023-01-31 07:00:49.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/ftn-auto/makefile 2023-02-27 23:28:34.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = gcookief.c statef.c inheritf.c pinitf.c subcommf.c tagmf.c destroyf.c gcommf.c optionsf.c
+SOURCEC = gcookief.c statef.c subcommf.c tagmf.c gcommf.c optionsf.c destroyf.c inheritf.c pinitf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/inherit.c petsc-3.18.5+dfsg1/src/sys/objects/inherit.c
--- petsc-3.18.4+dfsg1/src/sys/objects/inherit.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/inherit.c 2023-02-27 23:11:05.000000000 +0100
@@ -790,7 +790,7 @@
Synopsis:
#include <petscsys.h>
- PetscErrorCode PetscObjectComposeFunction(PetscObject obj,const char name[],void (*fptr)(void))
+ PetscErrorCode PetscObjectComposeFunction(PetscObject obj, const char name[], void (*fptr)(void))
Logically Collective
@@ -798,21 +798,20 @@
+ obj - the PETSc object; this must be cast with a (`PetscObject`), for example,
`PetscObjectCompose`((`PetscObject`)mat,...);
. name - name associated with the child function
-. fname - name of the function
- fptr - function pointer
Level: advanced
Notes:
- When the first argument of the function is the object within which it has been composed then `PetscTryMethod()` and `PetscUseMethod()`
+ When the first argument of `fptr` is (or is derived from) a `PetscObject` then `PetscTryMethod()` and `PetscUseMethod()`
can be used to call the function directly with error checking.
- To remove a registered routine, pass in NULL for fptr().
+ To remove a registered routine, pass in `NULL` for `fptr`.
- PetscObjectComposeFunction() can be used with any PETSc object (such as
+ `PetscObjectComposeFunction()` can be used with any PETSc object (such as
`Mat`, `Vec`, `KSP`, `SNES`, etc.) or any user-provided object.
- `PetscCallMethod()` is used to call a function that is stored in the objects obj->ops table.
+ `PetscCallMethod()` is used to call a function that is stored in the objects `obj->ops` table.
.seealso: `PetscObjectQueryFunction()`, `PetscContainerCreate()` `PetscObjectCompose()`, `PetscObjectQuery()`, `PetscTryMethod()`, `PetscUseMethod()`,
`PetscCallMethod()`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/objects/pinit.c petsc-3.18.5+dfsg1/src/sys/objects/pinit.c
--- petsc-3.18.4+dfsg1/src/sys/objects/pinit.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/objects/pinit.c 2023-02-27 23:11:05.000000000 +0100
@@ -738,7 +738,7 @@
prog: program name
file: optional PETSc database file name. Might be in Fortran string format when 'ftn' is true
help: program help message
- ftn: is it called from Fortran initilization (petscinitializef_)?
+ ftn: is it called from Fortran initialization (petscinitializef_)?
readarguments,len: used when fortran is true
*/
PETSC_INTERN PetscErrorCode PetscInitialize_Common(const char *prog, const char *file, const char *help, PetscBool ftn, PetscBool readarguments, PetscInt len)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/tests/ex54.c petsc-3.18.5+dfsg1/src/sys/tests/ex54.c
--- petsc-3.18.4+dfsg1/src/sys/tests/ex54.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/tests/ex54.c 2023-02-27 23:11:05.000000000 +0100
@@ -22,7 +22,7 @@
args: -options_left 0 -options_view
testset:
- TODO: occassionally randomly produces errors in CI, very difficult to debug, the wasted time out-weighs keeping this test in the CI
+ TODO: occasionally randomly produces errors in CI, very difficult to debug, the wasted time out-weighs keeping this test in the CI
args: -options_left 0 -options_view
test:
suffix: 1
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/tutorials/ex3f.F90 petsc-3.18.5+dfsg1/src/sys/tutorials/ex3f.F90
--- petsc-3.18.4+dfsg1/src/sys/tutorials/ex3f.F90 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/tutorials/ex3f.F90 2023-02-27 23:11:05.000000000 +0100
@@ -93,7 +93,7 @@
PetscCallA(PetscLogEventEnd(USER_EVENT9,ierr))
!
! We disable the logging of an event.
-! - Note that the user can activate/deactive both user-defined
+! - Note that the user can activate/deactivate both user-defined
! events and predefined PETSc events.
!
PetscCallA(PetscLogEventDeactivate(USER_EVENT1,ierr))
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/utils/ftn-auto/makefile petsc-3.18.5+dfsg1/src/sys/utils/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/sys/utils/ftn-auto/makefile 2023-01-31 07:00:49.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/sys/utils/ftn-auto/makefile 2023-02-27 23:28:34.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = mpitsf.c psleepf.c psplitf.c sortdf.c sortif.c sortipf.c sortsof.c mpiuf.c memcf.c
+SOURCEC = mpitsf.c psleepf.c sortdf.c sortipf.c sortsof.c mpiuf.c memcf.c psplitf.c sortif.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/utils/mpimesg.c petsc-3.18.5+dfsg1/src/sys/utils/mpimesg.c
--- petsc-3.18.4+dfsg1/src/sys/utils/mpimesg.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/utils/mpimesg.c 2023-02-27 23:11:05.000000000 +0100
@@ -58,7 +58,7 @@
}
/*@C
- PetscGatherMessageLengths - Computes infomation about messages that an MPI rank will receive,
+ PetscGatherMessageLengths - Computes information about messages that an MPI rank will receive,
including (from-id,length) pairs for each message.
Collective
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/utils/psplit.c petsc-3.18.5+dfsg1/src/sys/utils/psplit.c
--- petsc-3.18.4+dfsg1/src/sys/utils/psplit.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/utils/psplit.c 2023-02-27 23:11:05.000000000 +0100
@@ -114,7 +114,7 @@
Notes:
This is intended to be used with `MATSCALAPACK`, where the local size must
be equal in all processes (except possibly the last one). For instance,
- the local sizes when spliting N=50 with 6 processes are 9,9,9,9,9,5
+ the local sizes when splitting N=50 with 6 processes are 9,9,9,9,9,5
n and N cannot be both `PETSC_DECIDE`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/utils/sorti.c petsc-3.18.5+dfsg1/src/sys/utils/sorti.c
--- petsc-3.18.4+dfsg1/src/sys/utils/sorti.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/utils/sorti.c 2023-02-27 23:11:05.000000000 +0100
@@ -996,7 +996,7 @@
- J - merged additional array
Note:
- if L or J point to non-null arrays then this routine will assume they are of the approproate size and use them, otherwise this routine will allocate space for them
+ if L or J point to non-null arrays then this routine will assume they are of the appropriate size and use them, otherwise this routine will allocate space for them
Level: intermediate
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/sys/utils/str.c petsc-3.18.5+dfsg1/src/sys/utils/str.c
--- petsc-3.18.4+dfsg1/src/sys/utils/str.c 2022-10-26 15:00:16.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/sys/utils/str.c 2023-02-27 23:11:05.000000000 +0100
@@ -1345,7 +1345,7 @@
In particular the output of filenames and line numbers in PETSc stacks. This is to allow (limited) checking of PETSc
error handling by the test harness. This options also causes PETSc to attempt to return an error code of 0 so that the test
harness can process the output for differences in the usual manner as for successful runs. It should be provided to the test
- harness in the args: argument for specific examples. It will not neccessarily produce portable output if different errors
+ harness in the args: argument for specific examples. It will not necessarily produce portable output if different errors
(or no errors) occur on a subset of the MPI ranks.
Level: developer
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/constrained/tutorials/ex1.c petsc-3.18.5+dfsg1/src/tao/constrained/tutorials/ex1.c
--- petsc-3.18.4+dfsg1/src/tao/constrained/tutorials/ex1.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/tao/constrained/tutorials/ex1.c 2023-02-27 23:11:05.000000000 +0100
@@ -17,7 +17,7 @@
#include <petsctao.h>
-static char help[] = "Solves constrained optimiztion problem using pdipm.\n\
+static char help[] = "Solves constrained optimization problem using pdipm.\n\
Input parameters include:\n\
-tao_type pdipm : sets Tao solver\n\
-no_eq : removes the equaility constraints from the problem\n\
@@ -504,7 +504,7 @@
test:
suffix: 5
args: -tao_converged_reason -tao_almm_type classic -no_eq
- requires: !single
+ requires: !single !defined(PETSCTEST_VALGRIND)
filter: sed -e "s/CONVERGED_GATOL iterations *[0-9]\{1,\}/CONVERGED_GATOL/g"
test:
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90 petsc-3.18.5+dfsg1/src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90
--- petsc-3.18.4+dfsg1/src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90 2023-02-27 23:28:35.000000000 +0100
@@ -156,6 +156,73 @@
IS c ! IS
PetscErrorCode z
end subroutine TaoALMMGetDualIS
+ subroutine TaoSetSolution(a,b,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ PetscErrorCode z
+ end subroutine TaoSetSolution
+ subroutine TaoComputeGradient(a,b,c,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ Vec c ! Vec
+ PetscErrorCode z
+ end subroutine TaoComputeGradient
+ subroutine TaoComputeObjective(a,b,c,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ PetscReal c ! PetscReal
+ PetscErrorCode z
+ end subroutine TaoComputeObjective
+ subroutine TaoComputeObjectiveAndGradient(a,b,c,d,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ PetscReal c ! PetscReal
+ Vec d ! Vec
+ PetscErrorCode z
+ end subroutine TaoComputeObjectiveAndGradient
+ subroutine TaoSetResidualWeights(a,b,c,d,e,f,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ PetscInt c ! PetscInt
+ PetscInt d ! PetscInt
+ PetscInt e ! PetscInt
+ PetscReal f ! PetscReal
+ PetscErrorCode z
+ end subroutine TaoSetResidualWeights
+ subroutine TaoComputeResidual(a,b,c,z)
+ import tVec
+ Tao a ! Tao
+ Vec b ! Vec
+ Vec c ! Vec
+ PetscErrorCode z
+ end subroutine TaoComputeResidual
+ subroutine TaoIsObjectiveDefined(a,b,z)
+ Tao a ! Tao
+ PetscBool b ! PetscBool
+ PetscErrorCode z
+ end subroutine TaoIsObjectiveDefined
+ subroutine TaoIsGradientDefined(a,b,z)
+ Tao a ! Tao
+ PetscBool b ! PetscBool
+ PetscErrorCode z
+ end subroutine TaoIsGradientDefined
+ subroutine TaoIsObjectiveAndGradientDefined(a,b,z)
+ Tao a ! Tao
+ PetscBool b ! PetscBool
+ PetscErrorCode z
+ end subroutine TaoIsObjectiveAndGradientDefined
+ subroutine TaoSetStateDesignIS(a,b,c,z)
+ import tIS
+ Tao a ! Tao
+ IS b ! IS
+ IS c ! IS
+ PetscErrorCode z
+ end subroutine TaoSetStateDesignIS
subroutine TaoCreate(a,b,z)
MPI_Comm a ! MPI_Comm
Tao b ! Tao
@@ -407,73 +474,6 @@
Vec c ! Vec
PetscErrorCode z
end subroutine TaoGetDualVariables
- subroutine TaoSetSolution(a,b,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- PetscErrorCode z
- end subroutine TaoSetSolution
- subroutine TaoComputeGradient(a,b,c,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- Vec c ! Vec
- PetscErrorCode z
- end subroutine TaoComputeGradient
- subroutine TaoComputeObjective(a,b,c,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- PetscReal c ! PetscReal
- PetscErrorCode z
- end subroutine TaoComputeObjective
- subroutine TaoComputeObjectiveAndGradient(a,b,c,d,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- PetscReal c ! PetscReal
- Vec d ! Vec
- PetscErrorCode z
- end subroutine TaoComputeObjectiveAndGradient
- subroutine TaoSetResidualWeights(a,b,c,d,e,f,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- PetscInt c ! PetscInt
- PetscInt d ! PetscInt
- PetscInt e ! PetscInt
- PetscReal f ! PetscReal
- PetscErrorCode z
- end subroutine TaoSetResidualWeights
- subroutine TaoComputeResidual(a,b,c,z)
- import tVec
- Tao a ! Tao
- Vec b ! Vec
- Vec c ! Vec
- PetscErrorCode z
- end subroutine TaoComputeResidual
- subroutine TaoIsObjectiveDefined(a,b,z)
- Tao a ! Tao
- PetscBool b ! PetscBool
- PetscErrorCode z
- end subroutine TaoIsObjectiveDefined
- subroutine TaoIsGradientDefined(a,b,z)
- Tao a ! Tao
- PetscBool b ! PetscBool
- PetscErrorCode z
- end subroutine TaoIsGradientDefined
- subroutine TaoIsObjectiveAndGradientDefined(a,b,z)
- Tao a ! Tao
- PetscBool b ! PetscBool
- PetscErrorCode z
- end subroutine TaoIsObjectiveAndGradientDefined
- subroutine TaoSetStateDesignIS(a,b,c,z)
- import tIS
- Tao a ! Tao
- IS b ! IS
- IS c ! IS
- PetscErrorCode z
- end subroutine TaoSetStateDesignIS
subroutine TaoBRGNGetSubsolver(a,b,z)
Tao a ! Tao
Tao b ! Tao
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/interface/ftn-auto/makefile petsc-3.18.5+dfsg1/src/tao/interface/ftn-auto/makefile
--- petsc-3.18.4+dfsg1/src/tao/interface/ftn-auto/makefile 2023-01-31 07:00:49.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/tao/interface/ftn-auto/makefile 2023-02-27 23:28:34.000000000 +0100
@@ -4,7 +4,7 @@
CFLAGS =
FFLAGS =
-SOURCEC = taosolverf.c taosolver_boundsf.c taosolver_fgf.c taosolver_hjf.c
+SOURCEC = taosolver_fgf.c taosolver_hjf.c taosolverf.c taosolver_boundsf.c
SOURCEF =
SOURCEH =
DIRS =
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/interface/taosolver_bounds.c petsc-3.18.5+dfsg1/src/tao/interface/taosolver_bounds.c
--- petsc-3.18.4+dfsg1/src/tao/interface/taosolver_bounds.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/tao/interface/taosolver_bounds.c 2023-02-27 23:11:05.000000000 +0100
@@ -397,7 +397,7 @@
. tao - the Tao context
Output Parameters:
-+ X - point the equality constraints were evaluted on
++ X - point the equality constraints were evaluated on
- CE - vector of equality constraints evaluated at X
Level: developer
@@ -430,7 +430,7 @@
. tao - the Tao context
Output Parameters:
-+ X - point the inequality constraints were evaluted on
++ X - point the inequality constraints were evaluated on
- CE - vector of inequality constraints evaluated at X
Level: developer
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/interface/taosolver.c petsc-3.18.5+dfsg1/src/tao/interface/taosolver.c
--- petsc-3.18.4+dfsg1/src/tao/interface/taosolver.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/tao/interface/taosolver.c 2023-02-27 23:11:05.000000000 +0100
@@ -144,14 +144,14 @@
Input Parameters:
. tao - the Tao context
+ Level: beginner
+
Notes:
The user must set up the Tao with calls to `TaoSetSolution()`, `TaoSetObjective()`, `TaoSetGradient()`, and (if using 2nd order method) `TaoSetHessian()`.
- You should call `TaoGetConvergedReason()` or run with -tao_converged_reason to determine if the optimization algorithm actually succeeded or
+ You should call `TaoGetConvergedReason()` or run with `-tao_converged_reason` to determine if the optimization algorithm actually succeeded or
why it failed.
- Level: beginner
-
.seealso: `Tao`, `TaoCreate()`, `TaoSetObjective()`, `TaoSetGradient()`, `TaoSetHessian()`, `TaoGetConvergedReason()`, `TaoSetUp()`
@*/
PetscErrorCode TaoSolve(Tao tao)
@@ -204,14 +204,14 @@
Input Parameters:
. tao - the Tao context
+ Level: advanced
+
Notes:
The user will not need to explicitly call `TaoSetUp()`, as it will
automatically be called in `TaoSolve()`. However, if the user
desires to call it explicitly, it should come after `TaoCreate()`
and any TaoSetSomething() routines, but before `TaoSolve()`.
- Level: advanced
-
.seealso: `Tao`, `TaoCreate()`, `TaoSolve()`
@*/
PetscErrorCode TaoSetUp(Tao tao)
@@ -314,11 +314,11 @@
+ tao - Tao context
- flag - `PETSC_TRUE` or `PETSC_FALSE`
+ Level: advanced
+
Notes:
See `SNESKSPSetUseEW()` for customization details.
- Level: advanced
-
Reference:
S. C. Eisenstat and H. F. Walker, "Choosing the forcing terms in an
inexact Newton method", SISC 17 (1), pp.16-32, 1996.
@@ -370,12 +370,12 @@
. -tao_view - prints information about the Tao after solving
- -tao_converged_reason - prints the reason Tao stopped iterating
- Notes:
+ Level: beginner
+
+ Note:
To see all options, run your program with the -help option or consult the
user's manual. Should be called after `TaoCreate()` but before `TaoSolve()`
- Level: beginner
-
.seealso: `Tao`, `TaoCreate()`, `TaoSolve()`
@*/
PetscErrorCode TaoSetFromOptions(Tao tao)
@@ -556,6 +556,7 @@
- name - command line option
Level: intermediate
+
.seealso: `Tao`, `TaoView`, `PetscObjectViewFromOptions()`, `TaoCreate()`
@*/
PetscErrorCode TaoViewFromOptions(Tao A, PetscObject obj, const char name[])
@@ -578,6 +579,8 @@
Options Database Key:
. -tao_view - Calls `TaoView()` at the end of `TaoSolve()`
+ Level: beginner
+
Notes:
The available visualization contexts include
+ `PETSC_VIEWER_STDOUT_SELF` - standard output (default)
@@ -586,8 +589,6 @@
the file. All other processors send their
data to the first processor to print.
- Level: beginner
-
.seealso: `PetscViewerASCIIOpen()`
@*/
PetscErrorCode TaoView(Tao tao, PetscViewer viewer)
@@ -730,6 +731,18 @@
iterate information from the previous `TaoSolve()`. This feature is disabled by
default.
+ Logically Collective
+
+ Input Parameters:
++ tao - the Tao context
+- recycle - boolean flag
+
+ Options Database Keys:
+. -tao_recycle_history <true,false> - reuse the history
+
+ Level: intermediate
+
+ Notes:
For conjugate gradient methods (`TAOBNCG`), this re-uses the latest search direction
from the previous `TaoSolve()` call when computing the first search direction in a
new solution. By default, CG methods set the first search direction to the
@@ -742,19 +755,7 @@
For any other algorithm, this setting has no effect.
- Logically collective
-
- Input Parameters:
-+ tao - the Tao context
-- recycle - boolean flag
-
- Options Database Keys:
-. -tao_recycle_history <true,false> - reuse the history
-
- Level: intermediate
-
.seealso: `TaoGetRecycleHistory()`, `TAOBNCG`, `TAOBQNLS`, `TAOBQNKLS`, `TAOBQNKTR`, `TAOBQNKTL`
-
@*/
PetscErrorCode TaoSetRecycleHistory(Tao tao, PetscBool recycle)
{
@@ -769,7 +770,7 @@
TaoGetRecycleHistory - Retrieve the boolean flag for re-using iterate information
from the previous `TaoSolve()`. This feature is disabled by default.
- Logically collective
+ Logically Collective
Input Parameters:
. tao - the Tao context
@@ -780,7 +781,6 @@
Level: intermediate
.seealso: `TaoSetRecycleHistory()`, `TAOBNCG`, `TAOBQNLS`, `TAOBQNKLS`, `TAOBQNKTR`, `TAOBQNKTL`
-
@*/
PetscErrorCode TaoGetRecycleHistory(Tao tao, PetscBool *recycle)
{
@@ -794,7 +794,7 @@
/*@
TaoSetTolerances - Sets parameters used in Tao convergence tests
- Logically collective
+ Logically Collective
Input Parameters:
+ tao - the Tao context
@@ -808,17 +808,18 @@
- -tao_gttol <gttol> - Sets gttol
Stopping Criteria:
-$ ||g(X)|| <= gatol
-$ ||g(X)|| / |f(X)| <= grtol
-$ ||g(X)|| / ||g(X0)|| <= gttol
-
- Notes:
- Use PETSC_DEFAULT to leave one or more tolerances unchanged.
+.vb
+ ||g(X)|| <= gatol
+ ||g(X)|| / |f(X)| <= grtol
+ ||g(X)|| / ||g(X0)|| <= gttol
+.ve
Level: beginner
-.seealso: `TaoGetTolerances()`
+ Note:
+ Use `PETSC_DEFAULT` to leave one or more tolerances unchanged.
+.seealso: `TaoGetTolerances()`
@*/
PetscErrorCode TaoSetTolerances(Tao tao, PetscReal gatol, PetscReal grtol, PetscReal gttol)
{
@@ -860,24 +861,23 @@
/*@
TaoSetConstraintTolerances - Sets constraint tolerance parameters used in Tao convergence tests
- Logically collective
+ Logically Collective
Input Parameters:
+ tao - the Tao context
-. catol - absolute constraint tolerance, constraint norm must be less than catol for used for gatol convergence criteria
-- crtol - relative constraint tolerance, constraint norm must be less than crtol for used for gatol, gttol convergence criteria
+. catol - absolute constraint tolerance, constraint norm must be less than `catol` for used for gatol convergence criteria
+- crtol - relative constraint tolerance, constraint norm must be less than `crtol` for used for gatol, gttol convergence criteria
Options Database Keys:
+ -tao_catol <catol> - Sets catol
- -tao_crtol <crtol> - Sets crtol
- Notes:
- Use PETSC_DEFAULT to leave any tolerance unchanged.
-
Level: intermediate
-.seealso: `TaoGetTolerances()`, `TaoGetConstraintTolerances()`, `TaoSetTolerances()`
+ Notes:
+ Use `PETSC_DEFAULT` to leave any tolerance unchanged.
+.seealso: `TaoGetTolerances()`, `TaoGetConstraintTolerances()`, `TaoSetTolerances()`
@*/
PetscErrorCode TaoSetConstraintTolerances(Tao tao, PetscReal catol, PetscReal crtol)
{
@@ -909,14 +909,14 @@
/*@
TaoGetConstraintTolerances - Gets constraint tolerance parameters used in Tao convergence tests
- Not ollective
+ Not Collective
Input Parameter:
. tao - the Tao context
Output Parameters:
-+ catol - absolute constraint tolerance, constraint norm must be less than catol for used for gatol convergence criteria
-- crtol - relative constraint tolerance, constraint norm must be less than crtol for used for gatol, gttol convergence criteria
++ catol - absolute constraint tolerance, constraint norm must be less than `catol` for used for gatol convergence criteria
+- crtol - relative constraint tolerance, constraint norm must be less than `crtol` for used for gatol, gttol convergence criteria
Level: intermediate
@@ -965,7 +965,7 @@
When an approximate solution with an objective value below this number
has been found, the solver will terminate.
- Not collective
+ Not Collective
Input Parameters:
. tao - the Tao solver context
@@ -1123,7 +1123,7 @@
/*@
TaoSetInitialTrustRegionRadius - Sets the initial trust region radius.
- Logically collective
+ Logically Collective
Input Parameters:
+ tao - a Tao optimization solver
@@ -2181,7 +2181,7 @@
PetscFunctionReturn(0);
}
-/*MC
+/*@C
TaoRegister - Adds a method to the Tao package for unconstrained minimization.
Synopsis:
@@ -2193,9 +2193,6 @@
+ sname - name of a new user-defined solver
- func - routine to Create method context
- Note:
- `TaoRegister()` may be called multiple times to add several user-defined solvers.
-
Sample usage:
.vb
TaoRegister("my_solver",MySolverCreate);
@@ -2208,8 +2205,11 @@
Level: advanced
+ Note:
+ `TaoRegister()` may be called multiple times to add several user-defined solvers.
+
.seealso: `Tao`, `TaoSetType()`, `TaoRegisterAll()`, `TaoRegisterDestroy()`
-M*/
+@*/
PetscErrorCode TaoRegister(const char sname[], PetscErrorCode (*func)(Tao))
{
PetscFunctionBegin;
@@ -2226,7 +2226,7 @@
Level: advanced
-.seealso: `TaoRegisterAll()`, `TaoRegister()`
+.seealso: `Tao`, `TaoRegisterAll()`, `TaoRegister()`
@*/
PetscErrorCode TaoRegisterDestroy(void)
{
@@ -2253,7 +2253,7 @@
Level: intermediate
-.seealso: `TaoGetLinearSolveIterations()`, `TaoGetResidualNorm()`, `TaoGetObjective()`
+.seealso: `Tao`, `TaoGetLinearSolveIterations()`, `TaoGetResidualNorm()`, `TaoGetObjective()`
@*/
PetscErrorCode TaoGetIterationNumber(Tao tao, PetscInt *iter)
{
@@ -2278,10 +2278,11 @@
Level: intermediate
- Developer Note: This is the 2-norm of the residual, we cannot use `TaoGetGradientNorm()` because that has
- a different meaning. For some reason Tao sometimes calls the gradient the residual.
+ Developer Note:
+ This is the 2-norm of the residual, we cannot use `TaoGetGradientNorm()` because that has
+ a different meaning. For some reason Tao sometimes calls the gradient the residual.
-.seealso: `TaoGetLinearSolveIterations()`, `TaoGetIterationNumber()`, `TaoGetObjective()`
+.seealso: `Tao`, `TaoGetLinearSolveIterations()`, `TaoGetIterationNumber()`, `TaoGetObjective()`
@*/
PetscErrorCode TaoGetResidualNorm(Tao tao, PetscReal *value)
{
@@ -2303,7 +2304,7 @@
Level: developer
-.seealso: `TaoGetLinearSolveIterations()`
+.seealso: `Tao`, `TaoGetLinearSolveIterations()`
@*/
PetscErrorCode TaoSetIterationNumber(Tao tao, PetscInt iter)
{
@@ -2329,13 +2330,13 @@
Output Parameter:
. iter - iteration number
+ Level: intermediate
+
Notes:
The total iteration count is updated after each solve, if there is a current
- TaoSolve() in progress then those iterations are not yet counted.
-
- Level: intermediate
+ `TaoSolve()` in progress then those iterations are not yet counted.
-.seealso: `TaoGetLinearSolveIterations()`
+.seealso: `Tao`, `TaoGetLinearSolveIterations()`
@*/
PetscErrorCode TaoGetTotalIterationNumber(Tao tao, PetscInt *iter)
{
@@ -2357,7 +2358,7 @@
Level: developer
-.seealso: `TaoGetLinearSolveIterations()`
+.seealso: `Tao`, `TaoGetLinearSolveIterations()`
@*/
PetscErrorCode TaoSetTotalIterationNumber(Tao tao, PetscInt iter)
{
@@ -2378,21 +2379,24 @@
Input Parameters:
+ tao - the Tao context
- reason - one of
-$ `TAO_CONVERGED_ATOL` (2),
-$ `TAO_CONVERGED_RTOL` (3),
-$ `TAO_CONVERGED_STEPTOL` (4),
-$ `TAO_CONVERGED_MINF` (5),
-$ `TAO_CONVERGED_USER` (6),
-$ `TAO_DIVERGED_MAXITS` (-2),
-$ `TAO_DIVERGED_NAN` (-4),
-$ `TAO_DIVERGED_MAXFCN` (-5),
-$ `TAO_DIVERGED_LS_FAILURE` (-6),
-$ `TAO_DIVERGED_TR_REDUCTION` (-7),
-$ `TAO_DIVERGED_USER` (-8),
-$ `TAO_CONTINUE_ITERATING` (0)
+.vb
+ TAO_CONVERGED_ATOL (2),
+ TAO_CONVERGED_RTOL (3),
+ TAO_CONVERGED_STEPTOL (4),
+ TAO_CONVERGED_MINF (5),
+ TAO_CONVERGED_USER (6),
+ TAO_DIVERGED_MAXITS (-2),
+ TAO_DIVERGED_NAN (-4),
+ TAO_DIVERGED_MAXFCN (-5),
+ TAO_DIVERGED_LS_FAILURE (-6),
+ TAO_DIVERGED_TR_REDUCTION (-7),
+ TAO_DIVERGED_USER (-8),
+ TAO_CONTINUE_ITERATING (0)
+.ve
Level: intermediate
+.seealso: `Tao`
@*/
PetscErrorCode TaoSetConvergedReason(Tao tao, TaoConvergedReason reason)
{
@@ -2413,19 +2417,21 @@
Output Parameter:
. reason - one of
-$ `TAO_CONVERGED_GATOL` (3) ||g(X)|| < gatol
-$ `TAO_CONVERGED_GRTOL` (4) ||g(X)|| / f(X) < grtol
-$ `TAO_CONVERGED_GTTOL` (5) ||g(X)|| / ||g(X0)|| < gttol
-$ `TAO_CONVERGED_STEPTOL` (6) step size small
-$ `TAO_CONVERGED_MINF` (7) F < F_min
-$ `TAO_CONVERGED_USER` (8) User defined
-$ `TAO_DIVERGED_MAXITS` (-2) its > maxits
-$ `TAO_DIVERGED_NAN` (-4) Numerical problems
-$ `TAO_DIVERGED_MAXFCN` (-5) fevals > max_funcsals
-$ `TAO_DIVERGED_LS_FAILURE` (-6) line search failure
-$ `TAO_DIVERGED_TR_REDUCTION` (-7) trust region failure
-$ `TAO_DIVERGED_USER` (-8) (user defined)
-$ `TAO_CONTINUE_ITERATING` (0)
+.vb
+ TAO_CONVERGED_GATOL (3) ||g(X)|| < gatol
+ TAO_CONVERGED_GRTOL (4) ||g(X)|| / f(X) < grtol
+ TAO_CONVERGED_GTTOL (5) ||g(X)|| / ||g(X0)|| < gttol
+ TAO_CONVERGED_STEPTOL (6) step size small
+ TAO_CONVERGED_MINF (7) F < F_min
+ TAO_CONVERGED_USER (8) User defined
+ TAO_DIVERGED_MAXITS (-2) its > maxits
+ TAO_DIVERGED_NAN (-4) Numerical problems
+ TAO_DIVERGED_MAXFCN (-5) fevals > max_funcsals
+ TAO_DIVERGED_LS_FAILURE (-6) line search failure
+ TAO_DIVERGED_TR_REDUCTION (-7) trust region failure
+ TAO_DIVERGED_USER (-8) (user defined)
+ TAO_CONTINUE_ITERATING (0)
+.ve
where
+ X - current solution
@@ -2441,7 +2447,6 @@
Level: intermediate
.seealso: `TaoSetConvergenceTest()`, `TaoSetTolerances()`
-
@*/
PetscErrorCode TaoGetConvergedReason(Tao tao, TaoConvergedReason *reason)
{
@@ -2474,7 +2479,7 @@
Notes:
Tao returns the values set by the solvers in the routine `TaoMonitor()`.
- If any of the output arguments are set to NULL, no corresponding value will be returned.
+ If any of the output arguments are set to `NULL`, no corresponding value will be returned.
.seealso: `TaoMonitor()`, `TaoGetConvergedReason()`
@*/
@@ -2569,16 +2574,18 @@
. resid - array to hold residual history
. cnorm - array to hold constraint violation history
. lits - integer array holds the number of linear iterations for each Tao iteration
-. na - size of obj, resid, and cnorm
+. na - size of `obj`, `resid`, and `cnorm`
- reset - `PETSC_TRUE` indicates each new minimization resets the history counter to zero,
else it continues storing new values for new minimizations after the old ones
+ Level: intermediate
+
Notes:
If set, Tao will fill the given arrays with the indicated
information at each iteration. If 'obj','resid','cnorm','lits' are
- *all* NULL then space (using size na, or 1000 if na is `PETSC_DECIDE` or
+ *all* `NULL` then space (using size `na`, or 1000 if na is `PETSC_DECIDE` or
`PETSC_DEFAULT`) is allocated for the history.
- If not all are NULL, then only the non-NULL information categories
+ If not all are `NULL`, then only the non-`NULL` information categories
will be stored, the others will be ignored.
Any convergence information after iteration number 'na' will not be stored.
@@ -2587,10 +2594,7 @@
of accurate performance monitoring, when no I/O should be done
during the section of code that is being timed.
- Level: intermediate
-
.seealso: `TaoGetConvergenceHistory()`
-
@*/
PetscErrorCode TaoSetConvergenceHistory(Tao tao, PetscReal obj[], PetscReal resid[], PetscReal cnorm[], PetscInt lits[], PetscInt na, PetscBool reset)
{
@@ -2630,23 +2634,25 @@
. resid - array used to hold residual history
. cnorm - array used to hold constraint violation history
. lits - integer array used to hold linear solver iteration count
-- nhist - size of obj, resid, cnorm, and lits
+- nhist - size of `obj`, `resid`, `cnorm`, and `lits`
+
+ Level: advanced
Notes:
This routine must be preceded by calls to `TaoSetConvergenceHistory()`
and `TaoSolve()`, otherwise it returns useless information.
- The calling sequence for this routine in Fortran is
-$ call TaoGetConvergenceHistory(Tao tao, PetscInt nhist, PetscErrorCode ierr)
-
This routine is useful, e.g., when running a code for purposes
of accurate performance monitoring, when no I/O should be done
during the section of code that is being timed.
- Level: advanced
+ Fortran Note:
+ The calling sequence is
+.vb
+ call TaoGetConvergenceHistory(Tao tao, PetscInt nhist, PetscErrorCode ierr)
+.ve
.seealso: `Tao`, `TaoSolve()`, `TaoSetConvergenceHistory()`
-
@*/
PetscErrorCode TaoGetConvergenceHistory(Tao tao, PetscReal **obj, PetscReal **resid, PetscReal **cnorm, PetscInt **lits, PetscInt *nhist)
{
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/leastsquares/tutorials/cs1.c petsc-3.18.5+dfsg1/src/tao/leastsquares/tutorials/cs1.c
--- petsc-3.18.4+dfsg1/src/tao/leastsquares/tutorials/cs1.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/tao/leastsquares/tutorials/cs1.c 2023-02-27 23:11:05.000000000 +0100
@@ -196,7 +196,7 @@
/* ---------------------------------------------------------------------- */
PetscErrorCode InitializeUserData(AppCtx *user)
{
- PetscReal *b = user->b; /* **A=user->A, but we don't kown the dimension of A in this way, how to fix? */
+ PetscReal *b = user->b; /* **A=user->A, but we don't know the dimension of A in this way, how to fix? */
PetscInt m, n, k; /* loop index for M,N,K dimension. */
PetscFunctionBegin;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/leastsquares/tutorials/tomographyGenerateData.m petsc-3.18.5+dfsg1/src/tao/leastsquares/tutorials/tomographyGenerateData.m
--- petsc-3.18.4+dfsg1/src/tao/leastsquares/tutorials/tomographyGenerateData.m 2022-06-29 08:00:08.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/tao/leastsquares/tutorials/tomographyGenerateData.m 2023-02-27 23:11:05.000000000 +0100
@@ -10,7 +10,7 @@
% NTheta*NTau: Sinogram Size
% L: Forward Model, sparse matrix of NTheta*NTau by Ny*Nx
% SAll: Sinogram for all scans of NTheta*NTau*NScan, SAll(:,:,n) for the nth scan
-NTheta = 20; % sample angle #. Use odd NOT even, for display purpose of sinagram of Phantom. As even NTheta will include theta of 90 degree where sinagram will be very bright as Phantom sample has verical bright line on left and right boundary.
+NTheta = 20; % sample angle #. Use odd NOT even, for display purpose of sinagram of Phantom. As even NTheta will include theta of 90 degree where sinagram will be very bright as Phantom sample has vertical bright line on left and right boundary.
NTau = ceil(sqrt(sum(WSz.^2))); NTau = NTau + rem(NTau-Ny,2); % number of discrete beam, enough to cover object diagonal, also use + rem(NTau-Ny,2) to make NTau the same odd/even as Ny just for perfection, so that for theta=0, we have sum(WGT, 2)' and S(1, (1:Ny)+(NTau-Ny)/2) are the same with a scale factor
SSz = [NTheta, NTau];
L = XTM_Tensor_XH(WSz, NTheta, NTau);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/quadratic/impls/gpcg/gpcg.h petsc-3.18.5+dfsg1/src/tao/quadratic/impls/gpcg/gpcg.h
--- petsc-3.18.4+dfsg1/src/tao/quadratic/impls/gpcg/gpcg.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/tao/quadratic/impls/gpcg/gpcg.h 2023-02-27 23:11:05.000000000 +0100
@@ -52,7 +52,7 @@
PetscInt n_free; /* Number of free variables */
PetscInt n_upper;
PetscInt n_lower;
- PetscInt n_bind; /* Number of binding varibles */
+ PetscInt n_bind; /* Number of binding variables */
PetscInt ksp_type;
PetscInt subset_type;
} TAO_GPCG;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/tao/unconstrained/impls/nls/nls.c petsc-3.18.5+dfsg1/src/tao/unconstrained/impls/nls/nls.c
--- petsc-3.18.4+dfsg1/src/tao/unconstrained/impls/nls/nls.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/tao/unconstrained/impls/nls/nls.c 2023-02-27 23:11:05.000000000 +0100
@@ -836,7 +836,7 @@
. -tao_nls_pmsfac - merit shrink factor
. -tao_nls_eta1 - poor steplength; reduce radius
. -tao_nls_eta2 - reasonable steplength; leave radius
-. -tao_nls_eta3 - good steplength; increase readius
+. -tao_nls_eta3 - good steplength; increase radius
. -tao_nls_eta4 - excellent steplength; greatly increase radius
. -tao_nls_alpha1 - alpha1 reduction
. -tao_nls_alpha2 - alpha2 reduction
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/adapt/interface/tsadapt.c petsc-3.18.5+dfsg1/src/ts/adapt/interface/tsadapt.c
--- petsc-3.18.4+dfsg1/src/ts/adapt/interface/tsadapt.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/adapt/interface/tsadapt.c 2023-02-27 23:11:05.000000000 +0100
@@ -844,7 +844,7 @@
Collective
Input Parameters:
-+ adapt - adaptive contoller
++ adapt - adaptive controller
. ts - time stepper
- h - current step size
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/event/tsevent.c petsc-3.18.5+dfsg1/src/ts/event/tsevent.c
--- petsc-3.18.4+dfsg1/src/ts/event/tsevent.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/event/tsevent.c 2023-02-27 23:11:05.000000000 +0100
@@ -453,7 +453,7 @@
PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)ts)));
event->status = (TSEventStatus)out[0];
rollback = out[1];
- /* If rollback is true, the status will be overwritten so that an event at the endtime of current time step will be postponed to guarantee corret order */
+ /* If rollback is true, the status will be overwritten so that an event at the endtime of current time step will be postponed to guarantee correct order */
if (rollback) event->status = TSEVENT_LOCATED_INTERVAL;
if (event->status == TSEVENT_ZERO) {
for (i = 0; i < event->nevents; i++) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petsclandau.h90 petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petsclandau.h90
--- petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petsclandau.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petsclandau.h90 2023-02-27 23:28:35.000000000 +0100
@@ -10,7 +10,7 @@
PetscErrorCode z
end subroutine DMPlexLandauPrintNorms
subroutine DMPlexLandauCreateMassMatrix(a,b,z)
- import tMat,tDM
+ import tDM,tMat
DM a ! DM
Mat b ! Mat
PetscErrorCode z
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscsensitivity.h90 petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscsensitivity.h90
--- petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscsensitivity.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscsensitivity.h90 2023-02-27 23:28:35.000000000 +0100
@@ -33,7 +33,7 @@
PetscErrorCode z
end subroutine TSGetCostHessianProducts
subroutine TSAdjointSetForward(a,b,z)
- import tMat,tTS
+ import tTS,tMat
TS a ! TS
Mat b ! Mat
PetscErrorCode z
@@ -120,14 +120,14 @@
PetscErrorCode z
end subroutine TSForwardStep
subroutine TSForwardSetSensitivities(a,b,c,z)
- import tMat,tTS
+ import tTS,tMat
TS a ! TS
PetscInt b ! PetscInt
Mat c ! Mat
PetscErrorCode z
end subroutine TSForwardSetSensitivities
subroutine TSForwardGetSensitivities(a,b,c,z)
- import tMat,tTS
+ import tTS,tMat
TS a ! TS
PetscInt b ! PetscInt
Mat c ! Mat
@@ -139,13 +139,13 @@
PetscErrorCode z
end subroutine TSForwardCostIntegral
subroutine TSForwardSetInitialSensitivities(a,b,z)
- import tMat,tTS
+ import tTS,tMat
TS a ! TS
Mat b ! Mat
PetscErrorCode z
end subroutine TSForwardSetInitialSensitivities
subroutine TSForwardGetStages(a,b,c,z)
- import tMat,tTS
+ import tTS,tMat
TS a ! TS
PetscInt b ! PetscInt
Mat c ! Mat
@@ -166,7 +166,7 @@
PetscErrorCode z
end subroutine TSGetQuadratureTS
subroutine TSComputeSNESJacobian(a,b,c,d,z)
- import tMat,tTS,tVec
+ import tTS,tMat,tVec
TS a ! TS
Vec b ! Vec
Mat c ! Mat
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscts.h90 petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscts.h90
--- petsc-3.18.4+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscts.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/f90-mod/ftn-auto-interfaces/petscts.h90 2023-02-27 23:28:35.000000000 +0100
@@ -295,7 +295,7 @@
PetscErrorCode z
end subroutine TSSundialsSetTolerance
subroutine TSSundialsGetPC(a,b,z)
- import tTS,tPC
+ import tPC,tTS
TS a ! TS
PC b ! PC
PetscErrorCode z
@@ -379,7 +379,7 @@
PetscErrorCode z
end subroutine TSSetFromOptions
subroutine TSGetTrajectory(a,b,z)
- import tTS,tTSTrajectory
+ import tTSTrajectory,tTS
TS a ! TS
TSTrajectory b ! TSTrajectory
PetscErrorCode z
@@ -400,7 +400,7 @@
PetscErrorCode z
end subroutine TSRemoveTrajectory
subroutine TSComputeRHSJacobian(a,b,c,d,e,z)
- import tMat,tTS,tVec
+ import tTS,tMat,tVec
TS a ! TS
PetscReal b ! PetscReal
Vec c ! Vec
@@ -441,7 +441,7 @@
PetscErrorCode z
end subroutine TSComputeIFunction
subroutine TSComputeIJacobian(a,b,c,d,e,f,g,h,z)
- import tMat,tTS,tVec
+ import tTS,tMat,tVec
TS a ! TS
PetscReal b ! PetscReal
Vec c ! Vec
@@ -469,7 +469,7 @@
PetscErrorCode z
end subroutine TSComputeI2Function
subroutine TSComputeI2Jacobian(a,b,c,d,e,f,g,h,i,z)
- import tMat,tTS,tVec
+ import tTS,tMat,tVec
TS a ! TS
PetscReal b ! PetscReal
Vec c ! Vec
@@ -593,13 +593,13 @@
PetscErrorCode z
end subroutine TSReset
subroutine TSGetSNES(a,b,z)
- import tSNES,tTS
+ import tTS,tSNES
TS a ! TS
SNES b ! SNES
PetscErrorCode z
end subroutine TSGetSNES
subroutine TSSetSNES(a,b,z)
- import tSNES,tTS
+ import tTS,tSNES
TS a ! TS
SNES b ! SNES
PetscErrorCode z
@@ -768,13 +768,13 @@
PetscErrorCode z
end subroutine TSSetTime
subroutine TSSetDM(a,b,z)
- import tDM,tTS
+ import tTS,tDM
TS a ! TS
DM b ! DM
PetscErrorCode z
end subroutine TSSetDM
subroutine TSGetDM(a,b,z)
- import tDM,tTS
+ import tTS,tDM
TS a ! TS
DM b ! DM
PetscErrorCode z
@@ -1053,7 +1053,7 @@
PetscErrorCode z
end subroutine TSTrajectoryGetNumSteps
subroutine TSTrajectoryGet(a,b,c,d,z)
- import tTS,tTSTrajectory
+ import tTSTrajectory,tTS
TSTrajectory a ! TSTrajectory
TS b ! TS
PetscInt c ! PetscInt
@@ -1105,13 +1105,13 @@
PetscErrorCode z
end subroutine TSTrajectorySetKeepFiles
subroutine TSTrajectorySetFromOptions(a,b,z)
- import tTS,tTSTrajectory
+ import tTSTrajectory,tTS
TSTrajectory a ! TSTrajectory
TS b ! TS
PetscErrorCode z
end subroutine TSTrajectorySetFromOptions
subroutine TSTrajectorySetUp(a,b,z)
- import tTS,tTSTrajectory
+ import tTSTrajectory,tTS
TSTrajectory a ! TSTrajectory
TS b ! TS
PetscErrorCode z
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/impls/arkimex/arkimex.c petsc-3.18.5+dfsg1/src/ts/impls/arkimex/arkimex.c
--- petsc-3.18.4+dfsg1/src/ts/impls/arkimex/arkimex.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/impls/arkimex/arkimex.c 2023-02-27 23:11:05.000000000 +0100
@@ -126,7 +126,7 @@
/*MC
TSARKIMEX2D - Second order ARK IMEX scheme with L-stable implicit part.
- This method has one explicit stage and two implicit stages. The stability function is independent of the explicit part in the infinity limit of the implict component. This method was provided by Emil Constantinescu.
+ This method has one explicit stage and two implicit stages. The stability function is independent of the explicit part in the infinity limit of the implicit component. This method was provided by Emil Constantinescu.
Options Database Key:
. -ts_arkimex_type 2d - set arkimex type to 2d
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/impls/explicit/rk/mrk.c petsc-3.18.5+dfsg1/src/ts/impls/explicit/rk/mrk.c
--- petsc-3.18.4+dfsg1/src/ts/impls/explicit/rk/mrk.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/impls/explicit/rk/mrk.c 2023-02-27 23:11:05.000000000 +0100
@@ -8,7 +8,7 @@
2) The general system is written as
Usdot = Fs(t,Us,Uf)
Ufdot = Ff(t,Us,Uf) for multi-rate RK with RHS splits,
- user should partioned RHS by themselves and also provide the indexes for both slow and fast components.
+ user should partition RHS by themselves and also provide the indexes for both slow and fast components.
*/
#include <petsc/private/tsimpl.h>
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/impls/explicit/rk/rk.c petsc-3.18.5+dfsg1/src/ts/impls/explicit/rk/rk.c
--- petsc-3.18.4+dfsg1/src/ts/impls/explicit/rk/rk.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/impls/explicit/rk/rk.c 2023-02-27 23:11:05.000000000 +0100
@@ -1433,7 +1433,7 @@
Level: intermediate
Note:
- The multirate method requires interpolation. The default interpolation works for 1st- and 2nd- order RK, but not for high-order RKs except `TSRK5DP` which comes with the interpolation coeffcients (binterp).
+ The multirate method requires interpolation. The default interpolation works for 1st- and 2nd- order RK, but not for high-order RKs except `TSRK5DP` which comes with the interpolation coefficients (binterp).
.seealso: [](chapter_ts), `TSRK`, `TSRKGetMultirate()`
@*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/impls/implicit/theta/theta.c petsc-3.18.5+dfsg1/src/ts/impls/implicit/theta/theta.c
--- petsc-3.18.4+dfsg1/src/ts/impls/implicit/theta/theta.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/impls/implicit/theta/theta.c 2023-02-27 23:11:05.000000000 +0100
@@ -402,7 +402,7 @@
KSP ksp;
PetscScalar *xarr;
PetscReal adjoint_time_step;
- PetscReal adjoint_ptime; /* end time of the adjoint time step (ts->ptime is the start time, ususally ts->ptime is larger than adjoint_ptime) */
+ PetscReal adjoint_ptime; /* end time of the adjoint time step (ts->ptime is the start time, usually ts->ptime is larger than adjoint_ptime) */
PetscFunctionBegin;
if (th->Theta == 1.) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/interface/sensitivity/tssen.c petsc-3.18.5+dfsg1/src/ts/interface/sensitivity/tssen.c
--- petsc-3.18.4+dfsg1/src/ts/interface/sensitivity/tssen.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/interface/sensitivity/tssen.c 2023-02-27 23:11:05.000000000 +0100
@@ -1869,7 +1869,7 @@
/*
Unlike implicit methods, explicit methods do not have SNESMatFDColoring in the snes object
because SNESSolve() has not been called yet; so querying SNESMatFDColoring does not work for
- explicit methods. Instead, we check the Jacobian compute function directly to determin if FD
+ explicit methods. Instead, we check the Jacobian compute function directly to determine if FD
coloring is used.
*/
PetscCall(SNESGetJacobian(snes, NULL, NULL, &jac, NULL));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tests/ex28.c petsc-3.18.5+dfsg1/src/ts/tests/ex28.c
--- petsc-3.18.4+dfsg1/src/ts/tests/ex28.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tests/ex28.c 2023-02-27 23:11:05.000000000 +0100
@@ -116,7 +116,7 @@
PetscFunctionReturn(0);
}
-/* The intiial conditions are just the initial particle weights */
+/* The initial conditions are just the initial particle weights */
static PetscErrorCode SetInitialConditions(DM dmSw, Vec u)
{
DM dm;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tests/ex5.c petsc-3.18.5+dfsg1/src/ts/tests/ex5.c
--- petsc-3.18.4+dfsg1/src/ts/tests/ex5.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/tests/ex5.c 2023-02-27 23:11:05.000000000 +0100
@@ -148,7 +148,7 @@
PetscInt time; /* amount of loops */
struct in put;
PetscScalar rh; /* relative humidity */
- PetscScalar x; /* memory varialbe for relative humidity calculation */
+ PetscScalar x; /* memory variable for relative humidity calculation */
PetscScalar deep_grnd_temp; /* temperature of ground under top soil surface layer */
PetscScalar emma; /* absorption-emission constant for air */
PetscScalar pressure1 = 101300; /* surface pressure */
@@ -400,7 +400,7 @@
PetscScalar e; /* vapor pressure */
PetscScalar mixratio; /* mixing ratio */
- dtemp = dtemp - 273; /* converts from Kelvin to Celsuis */
+ dtemp = dtemp - 273; /* converts from Kelvin to Celsius */
e = 6.11 * (PetscPowScalar(10, ((7.5 * dtemp) / (237.7 + dtemp)))); /* converts from dew point temp to vapor pressure */
e = e * 100; /* converts from hPa to Pa */
mixratio = (0.622 * e) / (pressure1 - e); /* computes mixing ratio */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tests/ex5_control.txt petsc-3.18.5+dfsg1/src/ts/tests/ex5_control.txt
--- petsc-3.18.4+dfsg1/src/ts/tests/ex5_control.txt 2022-06-29 08:00:08.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tests/ex5_control.txt 2023-02-27 23:11:05.000000000 +0100
@@ -11,11 +11,11 @@
11. Wind direction........................90
13. RUNTIME...............................12
-14. INITAL DOMAIN:
+14. INITIAL DOMAIN:
15. Initiation specifier..................1
INITIAL DOMAIN DESCRIPTION:
-- To only diabatic dT/dt contributions (all fileds uniform throughout grid) enter 0 in line 15
+- To only diabatic dT/dt contributions (all fields uniform throughout grid) enter 0 in line 15
- Default initiation is a west-east temperature gradient, wind = 0, and two high pressure perturbations in the mass field
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex1.c petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex1.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex1.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex1.c 2023-02-27 23:11:05.000000000 +0100
@@ -17,7 +17,7 @@
Helpful runtime monitoring options:
-ts_view - prints information about the solver being used
- -ts_monitor - prints the progess of the solver
+ -ts_monitor - prints the progress of the solver
-ts_adapt_monitor - prints the progress of the time-step adaptor
-ts_monitor_lg_timestep - plots the size of each timestep (at each time-step)
-ts_monitor_lg_solution - plots each component of the solution as a function of time (at each timestep)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex4.c petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex4.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex4.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex4.c 2023-02-27 23:11:05.000000000 +0100
@@ -7,7 +7,7 @@
rho_t =
c_t =
- Further discusson on Page 134 and in 2d on Page 409
+ Further discussion on Page 134 and in 2d on Page 409
*/
/*
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c 2023-02-27 23:11:05.000000000 +0100
@@ -6,7 +6,7 @@
time-dependent partial differential equations.
In this problem, the initial value for the PDE is unknown, but the output (the final solution of the PDE) is known.
We want to determine the initial value that can produce the given output.
- We formulate the problem as a nonlinear optimization problem that minimizes the discrepency between the simulated
+ We formulate the problem as a nonlinear optimization problem that minimizes the discrepancy between the simulated
result and given reference solution, calculate the gradient of the objective function with the discrete adjoint
solver, and solve the optimization problem with TAO.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex11.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex11.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex11.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex11.c 2023-02-27 23:11:05.000000000 +0100
@@ -84,7 +84,7 @@
};
struct _n_Model {
- MPI_Comm comm; /* Does not do collective communicaton, but some error conditions can be collective */
+ MPI_Comm comm; /* Does not do collective communication, but some error conditions can be collective */
Physics physics;
FunctionalLink functionalRegistry;
PetscInt maxComputed;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex11_sa.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex11_sa.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex11_sa.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex11_sa.c 2023-02-27 23:11:05.000000000 +0100
@@ -86,7 +86,7 @@
};
struct _n_Model {
- MPI_Comm comm; /* Does not do collective communicaton, but some error conditions can be collective */
+ MPI_Comm comm; /* Does not do collective communication, but some error conditions can be collective */
Physics physics;
FunctionalLink functionalRegistry;
PetscInt maxComputed;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex14.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex14.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex14.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex14.c 2023-02-27 23:11:05.000000000 +0100
@@ -603,7 +603,7 @@
thi->erosion.refvel *= units->meter / units->year;
PetscCall(PetscOptionsReal("-thi_dirichlet_scale", "Scale Dirichlet boundary conditions by this factor", "", thi->dirichlet_scale, &thi->dirichlet_scale, NULL));
PetscCall(PetscOptionsReal("-thi_ssa_friction_scale", "Scale slip boundary conditions by this factor in SSA (2D) assembly", "", thi->ssa_friction_scale, &thi->ssa_friction_scale, NULL));
- PetscCall(PetscOptionsReal("-thi_inertia", "Coefficient of accelaration term in velocity system, physical is almost zero", NULL, thi->inertia, &thi->inertia, NULL));
+ PetscCall(PetscOptionsReal("-thi_inertia", "Coefficient of acceleration term in velocity system, physical is almost zero", NULL, thi->inertia, &thi->inertia, NULL));
PetscCall(PetscOptionsInt("-thi_nlevels", "Number of levels of refinement", "", thi->nlevels, &thi->nlevels, NULL));
PetscCall(PetscOptionsFList("-thi_mat_type", "Matrix type", "MatSetType", MatList, mtype, (char *)mtype, sizeof(mtype), NULL));
PetscCall(PetscStrallocpy(mtype, &thi->mattype));
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex20fwd.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex20fwd.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex20fwd.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex20fwd.c 2023-02-27 23:11:05.000000000 +0100
@@ -7,8 +7,8 @@
/* ------------------------------------------------------------------------
- This code demonstrates how to compute trajectory sensitivties w.r.t. the stiffness parameter mu.
- 1) Use two vectors s and sp for sensitivities w.r.t. initial values and paraeters respectively. This case requires the original Jacobian matrix and a JacobianP matrix for the only parameter mu.
+ This code demonstrates how to compute trajectory sensitivities w.r.t. the stiffness parameter mu.
+ 1) Use two vectors s and sp for sensitivities w.r.t. initial values and parameters respectively. This case requires the original Jacobian matrix and a JacobianP matrix for the only parameter mu.
2) Consider the initial values to be parameters as well. Then there are three parameters in total. The JacobianP matrix will be combined matrix of the Jacobian matrix and JacobianP matrix in the previous case. This choice can be selected by using command line option '-combined'
------------------------------------------------------------------------- */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex20td.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex20td.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex20td.c 2022-11-28 17:22:18.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex20td.c 2023-02-27 23:11:05.000000000 +0100
@@ -14,7 +14,7 @@
[u2'] = [mu2(t)*((1-u1^2)*u2-u1)]
(with initial conditions & params independent)
- Define uref to be solution with initail conditions (2,-2/3), mu=(1,1e3)
+ Define uref to be solution with initial conditions (2,-2/3), mu=(1,1e3)
- u_ref : (1.5967,-1.02969)
Define const function as cost = 2-norm(u - u_ref);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex26.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex26.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex26.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex26.c 2023-02-27 23:11:05.000000000 +0100
@@ -2,7 +2,7 @@
static char help[] = "Transient nonlinear driven cavity in 2d.\n\
\n\
The 2D driven cavity problem is solved in a velocity-vorticity formulation.\n\
-The flow can be driven with the lid or with bouyancy or both:\n\
+The flow can be driven with the lid or with buoyancy or both:\n\
-lidvelocity <lid>, where <lid> = dimensionless velocity of lid\n\
-grashof <gr>, where <gr> = dimensionless temperature gradent\n\
-prandtl <pr>, where <pr> = dimensionless thermal/momentum diffusity ratio\n\
@@ -140,7 +140,7 @@
PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "Driven cavity/natural convection options", "");
PetscCall(PetscOptionsReal("-lidvelocity", "Lid velocity, related to Reynolds number", "", user.lidvelocity, &user.lidvelocity, NULL));
PetscCall(PetscOptionsReal("-prandtl", "Ratio of viscous to thermal diffusivity", "", user.prandtl, &user.prandtl, NULL));
- PetscCall(PetscOptionsReal("-grashof", "Ratio of bouyant to viscous forces", "", user.grashof, &user.grashof, NULL));
+ PetscCall(PetscOptionsReal("-grashof", "Ratio of buoyant to viscous forces", "", user.grashof, &user.grashof, NULL));
PetscCall(PetscOptionsBool("-parabolic", "Relax incompressibility to make the system parabolic instead of differential-algebraic", "", user.parabolic, &user.parabolic, NULL));
PetscCall(PetscOptionsReal("-cfl_initial", "Advective CFL for the first time step", "", user.cfl_initial, &user.cfl_initial, NULL));
PetscOptionsEnd();
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex36.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex36.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex36.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex36.c 2023-02-27 23:11:05.000000000 +0100
@@ -152,7 +152,7 @@
PetscCall(TSCreate(PETSC_COMM_WORLD, &ts));
PetscCall(TSSetProblemType(ts, TS_NONLINEAR));
PetscCall(TSSetType(ts, TSARKIMEX));
- /* Must use ARKIMEX with fully implicit stages since mass matrix is not the indentity */
+ /* Must use ARKIMEX with fully implicit stages since mass matrix is not the identity */
PetscCall(TSARKIMEXSetType(ts, TSARKIMEXPRSSP2));
PetscCall(TSSetEquationType(ts, TS_EQ_DAE_IMPLICIT_INDEX1));
/*PetscCall(TSSetType(ts,TSROSW));*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/ex9.c petsc-3.18.5+dfsg1/src/ts/tutorials/ex9.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/ex9.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/ex9.c 2023-02-27 23:11:05.000000000 +0100
@@ -656,7 +656,7 @@
typedef struct {
PetscReal c; /* speed of sound: c = sqrt(bulk/rho) */
- PetscReal z; /* impedence: z = sqrt(rho*bulk) */
+ PetscReal z; /* impedance: z = sqrt(rho*bulk) */
} AcousticsCtx;
PETSC_UNUSED static inline void AcousticsFlux(AcousticsCtx *ctx, const PetscScalar *u, PetscScalar *f)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/multirate/ex5.c petsc-3.18.5+dfsg1/src/ts/tutorials/multirate/ex5.c
--- petsc-3.18.4+dfsg1/src/ts/tutorials/multirate/ex5.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/multirate/ex5.c 2023-02-27 23:11:05.000000000 +0100
@@ -52,7 +52,7 @@
speed = ctx->a;
if (x == 0 || x == xmin || x == xmax)
flux[0] = PetscMax(0, (speed[0] + speed[1]) / 2.0) * uL[0] + PetscMin(0, (speed[0] + speed[1]) / 2.0) * uR[0]; /* if condition need to be changed base on different problem, '0' is the discontinuous point of a */
- else if (x < 0) flux[0] = PetscMax(0, speed[0]) * uL[0] + PetscMin(0, speed[0]) * uR[0]; /* else if condition need to be changed based on diferent problem, 'x = 0' is discontinuous point of a */
+ else if (x < 0) flux[0] = PetscMax(0, speed[0]) * uL[0] + PetscMin(0, speed[0]) * uR[0]; /* else if condition need to be changed based on different problem, 'x = 0' is discontinuous point of a */
else flux[0] = PetscMax(0, speed[1]) * uL[0] + PetscMin(0, speed[1]) * uR[0];
*maxspeed = *speed;
PetscFunctionReturn(0);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/multirate/finitevolume1d.h petsc-3.18.5+dfsg1/src/ts/tutorials/multirate/finitevolume1d.h
--- petsc-3.18.4+dfsg1/src/ts/tutorials/multirate/finitevolume1d.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/multirate/finitevolume1d.h 2023-02-27 23:11:05.000000000 +0100
@@ -36,7 +36,7 @@
FVBC_INFLOW
} FVBCType;
extern const char *FVBCTypes[];
-/* we add three new variables at the end of input parameters of function to be position of cell center, left bounday of domain, right boundary of domain */
+/* we add three new variables at the end of input parameters of function to be position of cell center, left boundary of domain, right boundary of domain */
typedef PetscErrorCode (*RiemannFunction)(void *, PetscInt, const PetscScalar *, const PetscScalar *, PetscScalar *, PetscReal *, PetscReal, PetscReal, PetscReal);
typedef PetscErrorCode (*ReconstructFunction)(void *, PetscInt, const PetscScalar *, PetscScalar *, PetscScalar *, PetscReal *, PetscReal);
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/tutorials/network/wash.h petsc-3.18.5+dfsg1/src/ts/tutorials/network/wash.h
--- petsc-3.18.4+dfsg1/src/ts/tutorials/network/wash.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/tutorials/network/wash.h 2023-02-27 23:11:05.000000000 +0100
@@ -54,7 +54,7 @@
PetscInt nedge, nvertex; /* local number of components */
PetscInt Nedge, Nvertex; /* global number of components */
PetscInt *edgelist; /* local edge list */
- Vec localX, localXdot; /* vectors used in local function evalutation */
+ Vec localX, localXdot; /* vectors used in local function evaluation */
PetscInt nnodes_loc; /* num of global and local nodes */
/* Junction */
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/utils/dmplexlandau/plexland.c petsc-3.18.5+dfsg1/src/ts/utils/dmplexlandau/plexland.c
--- petsc-3.18.4+dfsg1/src/ts/utils/dmplexlandau/plexland.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/ts/utils/dmplexlandau/plexland.c 2023-02-27 23:11:05.000000000 +0100
@@ -31,7 +31,7 @@
if (maps[0].deviceType != LANDAU_CPU) {
#if defined(PETSC_HAVE_KOKKOS_KERNELS)
if (maps[0].deviceType == LANDAU_KOKKOS) {
- PetscCall(LandauKokkosDestroyMatMaps(maps, maps[0].numgrids)); // imples Kokkos does
+ PetscCall(LandauKokkosDestroyMatMaps(maps, maps[0].numgrids)); // implies Kokkos does
} // else could be CUDA
#elif defined(PETSC_HAVE_CUDA)
if (maps[0].deviceType == LANDAU_CUDA) {
@@ -1393,9 +1393,9 @@
}
ctx->radius[grid] *= v0_grid[grid] / ctx->v_0; // scale domain by thermal radius relative to v_0
}
- /* amr parametres */
+ /* amr parameters */
nt = LANDAU_DIM;
- PetscCall(PetscOptionsIntArray("-dm_landau_num_cells", "Number of cells in each dimention of base grid", "plexland.c", ctx->cells0, &nt, &flg));
+ PetscCall(PetscOptionsIntArray("-dm_landau_num_cells", "Number of cells in each dimension of base grid", "plexland.c", ctx->cells0, &nt, &flg));
nt = LANDAU_MAX_GRIDS;
PetscCall(PetscOptionsIntArray("-dm_landau_amr_levels_max", "Number of AMR levels of refinement around origin, after (RE) refinements along z", "plexland.c", ctx->numAMRRefine, &nt, &flg));
PetscCheck(!flg || nt >= ctx->num_grids, ctx->comm, PETSC_ERR_ARG_WRONG, "-dm_landau_amr_levels_max: given %" PetscInt_FMT " != number grids %" PetscInt_FMT, nt, ctx->num_grids);
@@ -1533,7 +1533,7 @@
P4estVertexMaps *maps;
const PetscInt *plex_batch = NULL, Nb = Nq, elMatSz = Nq * Nq * ctx->num_species * ctx->num_species; // tensor elements;
LandauIdx *coo_elem_offsets = NULL, *coo_elem_fullNb = NULL, (*coo_elem_point_offsets)[LANDAU_MAX_NQ + 1] = NULL;
- /* create GPU asssembly data */
+ /* create GPU assembly data */
PetscCall(PetscInfo(ctx->plex[0], "Make GPU maps %d\n", 1));
PetscCall(PetscLogEventBegin(ctx->events[2], 0, 0, 0, 0));
PetscCall(PetscMalloc(sizeof(*maps) * ctx->num_grids, &maps));
@@ -1658,7 +1658,7 @@
}
#if defined(PETSC_HAVE_KOKKOS_KERNELS)
if (ctx->deviceType == LANDAU_KOKKOS) {
- PetscCall(LandauKokkosCreateMatMaps(maps, pointMaps, Nf, Nq, grid)); // imples Kokkos does
+ PetscCall(LandauKokkosCreateMatMaps(maps, pointMaps, Nf, Nq, grid)); // implies Kokkos does
} // else could be CUDA
#endif
#if defined(PETSC_HAVE_CUDA)
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/ts/utils/dmplexlandau/tutorials/ex2.c petsc-3.18.5+dfsg1/src/ts/utils/dmplexlandau/tutorials/ex2.c
--- petsc-3.18.4+dfsg1/src/ts/utils/dmplexlandau/tutorials/ex2.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/ts/utils/dmplexlandau/tutorials/ex2.c 2023-02-27 23:11:05.000000000 +0100
@@ -592,7 +592,7 @@
PetscCall(PetscOptionsReal("-ex2_pulse_rate", "Number density of pulse for 'pulse' source", "none", rectx->pulse_rate, &rectx->pulse_rate, NULL));
rectx->T_cold *= 1.16e7; /* convert to Kelvin */
PetscCall(PetscOptionsReal("-ex2_ion_potential", "Potential to ionize impurity (should be array) in ev", "none", rectx->ion_potential, &rectx->ion_potential, NULL));
- PetscCall(PetscOptionsReal("-ex2_inductance", "Inductance E feild", "none", rectx->L, &rectx->L, NULL));
+ PetscCall(PetscOptionsReal("-ex2_inductance", "Inductance E field", "none", rectx->L, &rectx->L, NULL));
PetscCall(PetscOptionsBool("-ex2_connor_e_field_units", "Scale Ex but Connor-Hastie E_c", "none", Connor_E, &Connor_E, NULL));
PetscCall(PetscInfo(dm_dummy, "Num electrons from ions=%g, T_cold=%10.3e, ion potential=%10.3e, E_z=%10.3e v_0=%10.3e\n", (double)rectx->Ne_ion, (double)rectx->T_cold, (double)rectx->ion_potential, (double)ctx->Ez, (double)ctx->v_0));
PetscOptionsEnd();
@@ -681,7 +681,7 @@
PetscCall(TSSetApplicationContext(ts, ctx));
PetscCall(TSMonitorSet(ts, Monitor, ctx, NULL));
PetscCall(TSSetPreStep(ts, PreStep));
- rectx->Ez_initial = ctx->Ez; /* cache for induction caclulation - applied E field */
+ rectx->Ez_initial = ctx->Ez; /* cache for induction calculation - applied E field */
if (1) { /* warm up an test just DMPlexLandauIJacobian */
Vec vec;
PetscInt nsteps;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscis.h90 petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscis.h90
--- petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscis.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscis.h90 2023-02-27 23:28:35.000000000 +0100
@@ -212,7 +212,7 @@
PetscErrorCode z
end subroutine ISRestoreNonlocalIS
subroutine ISLoad(a,b,z)
- import tPetscViewer,tIS
+ import tIS,tPetscViewer
IS a ! IS
PetscViewer b ! PetscViewer
PetscErrorCode z
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsection.h90 petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsection.h90
--- petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsection.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsection.h90 2023-02-27 23:28:35.000000000 +0100
@@ -407,26 +407,26 @@
PetscErrorCode z
end subroutine PetscSectionSymDestroy
subroutine PetscSectionSetSym(a,b,z)
- import tPetscSection,tPetscSectionSym
+ import tPetscSectionSym,tPetscSection
PetscSection a ! PetscSection
PetscSectionSym b ! PetscSectionSym
PetscErrorCode z
end subroutine PetscSectionSetSym
subroutine PetscSectionGetSym(a,b,z)
- import tPetscSection,tPetscSectionSym
+ import tPetscSectionSym,tPetscSection
PetscSection a ! PetscSection
PetscSectionSym b ! PetscSectionSym
PetscErrorCode z
end subroutine PetscSectionGetSym
subroutine PetscSectionSetFieldSym(a,b,c,z)
- import tPetscSection,tPetscSectionSym
+ import tPetscSectionSym,tPetscSection
PetscSection a ! PetscSection
PetscInt b ! PetscInt
PetscSectionSym c ! PetscSectionSym
PetscErrorCode z
end subroutine PetscSectionSetFieldSym
subroutine PetscSectionGetFieldSym(a,b,c,z)
- import tPetscSection,tPetscSectionSym
+ import tPetscSectionSym,tPetscSection
PetscSection a ! PetscSection
PetscInt b ! PetscInt
PetscSectionSym c ! PetscSectionSym
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsf.h90 petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsf.h90
--- petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsf.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscpetscsf.h90 2023-02-27 23:28:35.000000000 +0100
@@ -105,7 +105,7 @@
PetscErrorCode z
end subroutine VecScatterSetFromOptions
subroutine VecScatterCreate(a,b,c,d,e,z)
- import tIS,tVecScatter,tVec
+ import tVec,tIS,tVecScatter
Vec a ! Vec
IS b ! IS
Vec c ! Vec
@@ -114,7 +114,7 @@
PetscErrorCode z
end subroutine VecScatterCreate
subroutine VecScatterBegin(a,b,c,d,e,z)
- import tVecScatter,tVec
+ import tVec,tVecScatter
VecScatter a ! VecScatter
Vec b ! Vec
Vec c ! Vec
@@ -123,7 +123,7 @@
PetscErrorCode z
end subroutine VecScatterBegin
subroutine VecScatterEnd(a,b,c,d,e,z)
- import tVecScatter,tVec
+ import tVec,tVecScatter
VecScatter a ! VecScatter
Vec b ! Vec
Vec c ! Vec
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscvec.h90 petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscvec.h90
--- petsc-3.18.4+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscvec.h90 2023-01-31 07:00:50.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/f90-mod/ftn-auto-interfaces/petscvec.h90 2023-02-27 23:28:35.000000000 +0100
@@ -258,7 +258,7 @@
PetscErrorCode z
end subroutine VecMAXPY
subroutine VecConcatenate(a,b,c,d,z)
- import tIS,tVec
+ import tVec,tIS
PetscInt a ! PetscInt
Vec b (*) ! Vec
Vec c ! Vec
@@ -266,14 +266,14 @@
PetscErrorCode z
end subroutine VecConcatenate
subroutine VecGetSubVector(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
Vec c ! Vec
PetscErrorCode z
end subroutine VecGetSubVector
subroutine VecRestoreSubVector(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
Vec c ! Vec
@@ -528,7 +528,7 @@
PetscErrorCode z
end subroutine VecSwap
subroutine VecStashView(a,b,z)
- import tPetscViewer,tVec
+ import tVec,tPetscViewer
Vec a ! Vec
PetscViewer b ! PetscViewer
PetscErrorCode z
@@ -654,28 +654,28 @@
PetscErrorCode z
end subroutine VecMTDotEnd
subroutine VecWhichEqual(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
IS c ! IS
PetscErrorCode z
end subroutine VecWhichEqual
subroutine VecWhichLessThan(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
IS c ! IS
PetscErrorCode z
end subroutine VecWhichLessThan
subroutine VecWhichGreaterThan(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
IS c ! IS
PetscErrorCode z
end subroutine VecWhichGreaterThan
subroutine VecWhichBetween(a,b,c,d,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
Vec c ! Vec
@@ -683,7 +683,7 @@
PetscErrorCode z
end subroutine VecWhichBetween
subroutine VecWhichBetweenOrEqual(a,b,c,d,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
Vec c ! Vec
@@ -691,7 +691,7 @@
PetscErrorCode z
end subroutine VecWhichBetweenOrEqual
subroutine VecWhichInactive(a,b,c,d,e,f,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
Vec b ! Vec
Vec c ! Vec
@@ -701,7 +701,7 @@
PetscErrorCode z
end subroutine VecWhichInactive
subroutine VecISAXPY(a,b,c,d,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
PetscScalar c ! PetscScalar
@@ -709,7 +709,7 @@
PetscErrorCode z
end subroutine VecISAXPY
subroutine VecISCopy(a,b,c,d,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
ScatterMode c ! ScatterMode
@@ -717,14 +717,14 @@
PetscErrorCode z
end subroutine VecISCopy
subroutine ISComplementVec(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
IS a ! IS
Vec b ! Vec
IS c ! IS
PetscErrorCode z
end subroutine ISComplementVec
subroutine VecISSet(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
PetscScalar c ! PetscScalar
@@ -778,7 +778,7 @@
PetscErrorCode z
end subroutine VecChop
subroutine PetscSectionVecView(a,b,c,z)
- import tPetscViewer,tPetscSection,tVec
+ import tVec,tPetscSection,tPetscViewer
PetscSection a ! PetscSection
Vec b ! Vec
PetscViewer c ! PetscViewer
@@ -969,7 +969,7 @@
PetscErrorCode z
end subroutine VecAbs
subroutine VecPermute(a,b,c,z)
- import tIS,tVec
+ import tVec,tIS
Vec a ! Vec
IS b ! IS
PetscBool c ! PetscBool
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/is/interface/index.c petsc-3.18.5+dfsg1/src/vec/is/is/interface/index.c
--- petsc-3.18.4+dfsg1/src/vec/is/is/interface/index.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/is/is/interface/index.c 2023-02-27 23:11:05.000000000 +0100
@@ -755,7 +755,7 @@
- type - whether the property is local (IS_LOCAL) or global (IS_GLOBAL)
Output Parameter:
-. flg - wheter the property is true (PETSC_TRUE) or false (PETSC_FALSE)
+. flg - whether the property is true (PETSC_TRUE) or false (PETSC_FALSE)
Note: ISGetInfo uses cached values when possible, which will be incorrect if ISSetInfo() has been called with incorrect information. To clear cached values, use ISClearInfoCache().
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/is/utils/isdiff.c petsc-3.18.5+dfsg1/src/vec/is/is/utils/isdiff.c
--- petsc-3.18.4+dfsg1/src/vec/is/is/utils/isdiff.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/is/is/utils/isdiff.c 2023-02-27 23:11:05.000000000 +0100
@@ -725,7 +725,7 @@
corresponding to these global indices are either mapped to -1 (if !drop) or are omitted (if drop). In the former
case the size of c is that same as that of a, in the latter case c's size may be smaller.
- The resulting `IS` is sequential, since the index substition it encodes is purely local.
+ The resulting `IS` is sequential, since the index substitution it encodes is purely local.
.seealso: `IS`, `ISLocalToGlobalMapping`
@*/
@@ -775,7 +775,7 @@
Notes:
Indices in f are unchanged. f[h[i]] is the i-th smallest f index.
- If always == `PETSC_FALSE`, an extra check is peformed to see whether
+ If always == `PETSC_FALSE`, an extra check is performed to see whether
the f indices are nondecreasing. h is built on `PETSC_COMM_SELF`, since
the permutation has a local meaning only.
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/section/interface/section.c petsc-3.18.5+dfsg1/src/vec/is/section/interface/section.c
--- petsc-3.18.4+dfsg1/src/vec/is/section/interface/section.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/is/section/interface/section.c 2023-02-27 23:11:05.000000000 +0100
@@ -3549,7 +3549,7 @@
- points - `IS` with points to extract; its indices must lie in the chart of origSection
Output Parameters:
-+ newSection - the new `PetscSection` desribing the layout of the new array (with points renumbered 0,1,... but preserving numbers of DOFs)
++ newSection - the new `PetscSection` describing the layout of the new array (with points renumbered 0,1,... but preserving numbers of DOFs)
- newArray - the array of the extracted DOFs; its size is the storage size of newSection
Level: developer
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu
--- petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/nvshmem/sfnvshmem.cu 2023-02-27 23:11:05.000000000 +0100
@@ -233,7 +233,7 @@
PetscInt buflen = (direction == PETSCSF_ROOT2LEAF) ? sf->leafbuflen[PETSCSF_REMOTE] : bas->rootbuflen[PETSCSF_REMOTE];
PetscFunctionBegin;
- /* If unpack to non-null device buffer, build the endRemoteComm dependance */
+ /* If unpack to non-null device buffer, build the endRemoteComm dependence */
if (buflen) {
PetscCallCUDA(cudaEventRecord(link->endRemoteComm, link->remoteCommStream));
PetscCallCUDA(cudaStreamWaitEvent(link->stream, link->endRemoteComm, 0));
@@ -498,7 +498,7 @@
}
}
-/* one-thread kernel, which takes in charge all locally accesible */
+/* one-thread kernel, which takes in charge all locally accessible */
__global__ static void WaitSignalsFromLocallyAccessible(PetscInt ndstranks, PetscMPIInt *dstranks, uint64_t *srcsig, const char *dst)
{
for (int i = 0; i < ndstranks; i++) {
@@ -694,7 +694,7 @@
PetscFunctionBegin;
/* Check to see if we can directly send/recv root/leafdata with the given sf, sfop and op.
- We only care root/leafdirect[PETSCSF_REMOTE], since we never need intermeidate buffers in local communication with NVSHMEM.
+ We only care root/leafdirect[PETSCSF_REMOTE], since we never need intermediate buffers in local communication with NVSHMEM.
*/
if (sfop == PETSCSF_BCAST) { /* Move data from rootbuf to leafbuf */
if (sf->use_nvshmem_get) {
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfbasic.c petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfbasic.c
--- petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfbasic.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfbasic.c 2023-02-27 23:11:05.000000000 +0100
@@ -187,7 +187,7 @@
PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_BCAST, &link));
/* Pack rootdata to rootbuf for remote communication */
PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata));
- /* Start communcation, e.g., post MPI_Isend */
+ /* Start communication, e.g., post MPI_Isend */
PetscCall(PetscSFLinkStartCommunication(sf, link, PETSCSF_ROOT2LEAF));
/* Do local scatter (i.e., self to self communication), which overlaps with the remote communication above */
PetscCall(PetscSFLinkScatterLocal(sf, link, PETSCSF_ROOT2LEAF, (void *)rootdata, leafdata, op));
@@ -287,7 +287,7 @@
PetscFunctionReturn(0);
}
-/* An optimized PetscSFCreateEmbeddedRootSF. We aggresively make use of the established communication on sf.
+/* An optimized PetscSFCreateEmbeddedRootSF. We aggressively make use of the established communication on sf.
We need one bcast on sf, and no communication anymore to build the embedded sf. Note that selected[]
was sorted before calling the routine.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfmpi.c petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfmpi.c
--- petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfmpi.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfmpi.c 2023-02-27 23:11:05.000000000 +0100
@@ -110,7 +110,7 @@
} else {
rootmtype_mpi = leafmtype_mpi = PETSC_MEMTYPE_HOST;
}
- /* Will root/leafdata be directly accessed by MPI? Without use_gpu_aware_mpi, device data is bufferred on host and then passed to MPI */
+ /* Will root/leafdata be directly accessed by MPI? Without use_gpu_aware_mpi, device data is buffered on host and then passed to MPI */
rootdirect_mpi = rootdirect[PETSCSF_REMOTE] && (rootmtype_mpi == rootmtype) ? 1 : 0;
leafdirect_mpi = leafdirect[PETSCSF_REMOTE] && (leafmtype_mpi == leafmtype) ? 1 : 0;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfpack.h petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfpack.h
--- petsc-3.18.4+dfsg1/src/vec/is/sf/impls/basic/sfpack.h 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/impls/basic/sfpack.h 2023-02-27 23:11:05.000000000 +0100
@@ -15,7 +15,7 @@
#endif
/* In terms of function overloading, long long int is a different type than int64_t, which PetscInt might be defined to.
- We perfer long long int over PetscInt (int64_t), since CUDA atomics are built around (unsigned) long long int.
+ We prefer long long int over PetscInt (int64_t), since CUDA atomics are built around (unsigned) long long int.
*/
typedef long long int llint;
typedef unsigned long long int ullint;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/interface/sf.c petsc-3.18.5+dfsg1/src/vec/is/sf/interface/sf.c
--- petsc-3.18.4+dfsg1/src/vec/is/sf/interface/sf.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/interface/sf.c 2023-02-27 23:11:05.000000000 +0100
@@ -1399,7 +1399,7 @@
Notes:
When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
- are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should
+ are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should
use `PetscSFBcastWithMemTypeBegin()` instead.
.seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()`
@@ -1496,7 +1496,7 @@
Notes:
When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
- are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should
+ are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should
use `PetscSFReduceWithMemTypeBegin()` instead.
.seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/interface/vscat.c petsc-3.18.5+dfsg1/src/vec/is/sf/interface/vscat.c
--- petsc-3.18.4+dfsg1/src/vec/is/sf/interface/vscat.c 2023-01-31 06:19:48.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/interface/vscat.c 2023-02-27 23:11:05.000000000 +0100
@@ -143,7 +143,7 @@
PetscCall(PetscObjectTypeCompare((PetscObject)sf, PETSCSFNEIGHBOR, &isneighbor));
PetscCheck(isbasic || isneighbor, PetscObjectComm((PetscObject)sf), PETSC_ERR_SUP, "VecScatterRemap on SF type %s is not supported", type);
- PetscCall(PetscSFSetUp(sf)); /* to bulid sf->irootloc if SetUp is not yet called */
+ PetscCall(PetscSFSetUp(sf)); /* to build sf->irootloc if SetUp is not yet called */
/* Root indices are going to be remapped. This is tricky for SF. Root indices are used in sf->rremote,
sf->remote and bas->irootloc. The latter one is cheap to remap, but the former two are not.
@@ -160,7 +160,7 @@
/* Not easy to free sf->rremote since it was allocated with PetscMalloc4(), so just give it crazy values */
for (i = 0; i < sf->roffset[sf->nranks]; i++) sf->rremote[i] = PETSC_MIN_INT;
- /* Indices in tomap[] are for each indivisual vector entry. But indices in sf are for each
+ /* Indices in tomap[] are for each individual vector entry. But indices in sf are for each
block in the vector. So before the remapping, we have to expand indices in sf by bs, and
after the remapping, we have to shrink them back.
*/
@@ -766,7 +766,7 @@
/* Other ranks also scatter the whole mpi x to seq y, so it is a ToAll candidate in their view */
pattern[0] = 1;
} else if (ixsize == 0) {
- /* Other ranks do nothing, so it is a ToZero candiate */
+ /* Other ranks do nothing, so it is a ToZero candidate */
pattern[1] = 1;
}
}
@@ -876,7 +876,7 @@
to owner process of yindices[i] according to ylayout, i = 0..n.
I did it through a temp sf, but later I thought the old design was inefficient and also distorted log view.
- We want to mape one VecScatterCreate() call to one PetscSFCreate() call. The old design mapped to three
+ We want to map one VecScatterCreate() call to one PetscSFCreate() call. The old design mapped to three
PetscSFCreate() calls. This code is on critical path of VecScatterSetUp and is used by every VecScatterCreate.
So I commented it out and did another optimized implementation. The commented code is left here for reference.
*/
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/is/sf/tutorials/ex1f.F90 petsc-3.18.5+dfsg1/src/vec/is/sf/tutorials/ex1f.F90
--- petsc-3.18.4+dfsg1/src/vec/is/sf/tutorials/ex1f.F90 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/is/sf/tutorials/ex1f.F90 2023-02-27 23:11:05.000000000 +0100
@@ -104,7 +104,7 @@
! Clean storage for star forest.
PetscCallA(PetscSFDestroy(sf,ierr))
-! Create a star forest with continous leaves and hence no buffer
+! Create a star forest with continuous leaves and hence no buffer
PetscCallA(PetscSFCreate(PETSC_COMM_WORLD,sf,ierr))
PetscCallA(PetscSFSetFromOptions(sf,ierr))
PetscCallA(PetscSFSetGraph(sf,nrootsalloc,nleaves,PETSC_NULL_INTEGER,PETSC_COPY_VALUES,remote,PETSC_COPY_VALUES,ierr))
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/impls/mpi/pbvec.c petsc-3.18.5+dfsg1/src/vec/vec/impls/mpi/pbvec.c
--- petsc-3.18.4+dfsg1/src/vec/vec/impls/mpi/pbvec.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/vec/impls/mpi/pbvec.c 2023-02-27 23:11:05.000000000 +0100
@@ -758,7 +758,7 @@
PetscFunctionBegin;
PetscCall(PetscObjectTypeCompare((PetscObject)vv, VECMPI, &flg));
- /* if already fully existant VECMPI then basically destroy it and rebuild with ghosting */
+ /* if already fully existent VECMPI then basically destroy it and rebuild with ghosting */
if (flg) {
PetscInt n, N;
Vec_MPI *w;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/impls/mpi/pdvec.c petsc-3.18.5+dfsg1/src/vec/vec/impls/mpi/pdvec.c
--- petsc-3.18.4+dfsg1/src/vec/vec/impls/mpi/pdvec.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/impls/mpi/pdvec.c 2023-02-27 23:11:05.000000000 +0100
@@ -1020,7 +1020,7 @@
PetscCall(VecGetSize(x, &M));
/* ---------------------------------------------------------------------------*/
- /* Sort COOs along with a permuation array, so that negative indices come */
+ /* Sort COOs along with a permutation array, so that negative indices come */
/* first, then local ones, then remote ones. */
/* ---------------------------------------------------------------------------*/
PetscCount n1 = coo_n, nneg, *perm;
@@ -1046,7 +1046,7 @@
}
}
- /* Sort the indices, after that, [0,nneg) have ignored entires, [nneg,rem) have local entries and [rem,n1) have remote entries */
+ /* Sort the indices, after that, [0,nneg) have ignored entries, [nneg,rem) have local entries and [rem,n1) have remote entries */
PetscCall(PetscSortIntWithCountArray(n1, i1, perm));
for (k = 0; k < n1; k++) {
if (i1[k] > PETSC_MIN_INT) break;
@@ -1252,7 +1252,7 @@
PetscCall(PetscSFReduceWithMemTypeBegin(vmpi->coo_sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
/* Add local entries to A and B */
for (PetscInt i = 0; i < m; i++) { /* All entries in a[] are either zero'ed or added with a value (i.e., initialized) */
- PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stablility */
+ PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */
for (PetscCount k = jmap1[i]; k < jmap1[i + 1]; k++) sum += v[perm1[k]];
a[i] = (imode == INSERT_VALUES ? 0.0 : a[i]) + sum;
}
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/impls/nest/vecnest.c petsc-3.18.5+dfsg1/src/vec/vec/impls/nest/vecnest.c
--- petsc-3.18.4+dfsg1/src/vec/vec/impls/nest/vecnest.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/vec/impls/nest/vecnest.c 2023-02-27 23:11:05.000000000 +0100
@@ -469,7 +469,7 @@
PetscFunctionReturn(0);
}
-/* Returns the sum of the global size of all the consituent vectors in the nest */
+/* Returns the sum of the global size of all the constituent vectors in the nest */
static PetscErrorCode VecGetSize_Nest(Vec x, PetscInt *N)
{
PetscFunctionBegin;
@@ -477,7 +477,7 @@
PetscFunctionReturn(0);
}
-/* Returns the sum of the local size of all the consituent vectors in the nest */
+/* Returns the sum of the local size of all the constituent vectors in the nest */
static PetscErrorCode VecGetLocalSize_Nest(Vec x, PetscInt *n)
{
PetscFunctionBegin;
@@ -1119,7 +1119,7 @@
PetscCall(VecCreate(comm, &V));
PetscCall(PetscObjectChangeTypeName((PetscObject)V, VECNEST));
- /* allocate and set pointer for implememtation data */
+ /* allocate and set pointer for implementation data */
PetscCall(PetscNew(&s));
V->data = (void *)s;
s->setup_called = PETSC_FALSE;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx petsc-3.18.5+dfsg1/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
--- petsc-3.18.4+dfsg1/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx 2023-02-27 23:11:05.000000000 +0100
@@ -834,7 +834,7 @@
PetscFunctionReturn(0);
}
-/* Replace the array in vin with a[] that must be allocated by PetscMalloc. a[] is owned by vin afterwords. */
+/* Replace the array in vin with a[] that must be allocated by PetscMalloc. a[] is owned by vin afterwards. */
PetscErrorCode VecReplaceArray_SeqKokkos(Vec vin, const PetscScalar *a)
{
Vec_Seq *vecseq = (Vec_Seq *)vin->data;
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/interface/rvector.c petsc-3.18.5+dfsg1/src/vec/vec/interface/rvector.c
--- petsc-3.18.4+dfsg1/src/vec/vec/interface/rvector.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/vec/interface/rvector.c 2023-02-27 23:11:05.000000000 +0100
@@ -379,7 +379,7 @@
Notes:
Returns the value `PETSC_MAX_REAL` and negative p if the vector is of length 0.
- This returns the smallest index with the minumum value
+ This returns the smallest index with the minimum value
.seealso: [](chapter_vectors), `Vec`, `VecMax()`
@*/
@@ -770,7 +770,7 @@
`w` cannot be either `x` or `y`, but `x` and `y` can be the same
Developer Note:
- The implementation is optimzed for alpha of -1.0, 0.0, and 1.0
+ The implementation is optimized for alpha of -1.0, 0.0, and 1.0
.seealso: [](chapter_vectors), `Vec`, `VecAXPY()`, `VecAYPX()`, `VecAXPBY()`, `VecMAXPY()`, `VecAXPBYPCZ()`
@*/
@@ -2176,7 +2176,7 @@
}
/*@C
- VecGetArrayReadAndMemType - Like `VecGetArrayRead()`, but if the input vector is a device vector, it will return a read-only device pointer. The returned pointer is guarenteed to point to up-to-date data. For host vectors, it functions as `VecGetArrayRead()`.
+ VecGetArrayReadAndMemType - Like `VecGetArrayRead()`, but if the input vector is a device vector, it will return a read-only device pointer. The returned pointer is guaranteed to point to up-to-date data. For host vectors, it functions as `VecGetArrayRead()`.
Not Collective
@@ -4462,7 +4462,7 @@
Level: beginner
Notes:
- The function is usefull in split-phase computations, which usually have a begin phase and an end phase.
+ The function is useful in split-phase computations, which usually have a begin phase and an end phase.
One can call `VecLockWriteSet`(x,`PETSC_TRUE`) in the begin phase to lock a vector for exclusive
access, and call `VecLockWriteSet`(x,`PETSC_FALSE`) in the end phase to unlock the vector from exclusive
access. In this way, one is ensured no other operations can access the vector in between. The code may like
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/interface/vector.c petsc-3.18.5+dfsg1/src/vec/vec/interface/vector.c
--- petsc-3.18.4+dfsg1/src/vec/vec/interface/vector.c 2022-12-28 20:00:16.000000000 +0100
+++ petsc-3.18.5+dfsg1/src/vec/vec/interface/vector.c 2023-02-27 23:11:05.000000000 +0100
@@ -923,7 +923,7 @@
}
/*@
- VecSetOption - Sets an option for controling a vector's behavior.
+ VecSetOption - Sets an option for controlling a vector's behavior.
Collective
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/tests/ex48.c petsc-3.18.5+dfsg1/src/vec/vec/tests/ex48.c
--- petsc-3.18.4+dfsg1/src/vec/vec/tests/ex48.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/tests/ex48.c 2023-02-27 23:11:05.000000000 +0100
@@ -46,7 +46,7 @@
/* 20 */
"<",
};
-/* corresponsing expected absolute paths - positions in abspath */
+/* corresponding expected absolute paths - positions in abspath */
static const PetscInt paths2apaths[np] = {
/* 0 */
0,
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/tests/ex49.c petsc-3.18.5+dfsg1/src/vec/vec/tests/ex49.c
--- petsc-3.18.4+dfsg1/src/vec/vec/tests/ex49.c 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/tests/ex49.c 2023-02-27 23:11:05.000000000 +0100
@@ -47,7 +47,7 @@
PetscInt shift = (k < 2) ? 0 : (k == 2) ? 1 : 0; /* Used to change patterns */
/* If saveCommunicationPattern, let's see what should happen in the 5 iterations:
- iter 0: flag is true, and this is the first assebmly, so petsc should keep the
+ iter 0: flag is true, and this is the first assembly, so petsc should keep the
communication pattern built during this assembly.
iter 1: flag is true, reuse the pattern.
iter 2: flag is false, discard/free the pattern built in iter 0; rebuild a new
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/tutorials/ex43f.F90 petsc-3.18.5+dfsg1/src/vec/vec/tutorials/ex43f.F90
--- petsc-3.18.4+dfsg1/src/vec/vec/tutorials/ex43f.F90 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/tutorials/ex43f.F90 2023-02-27 23:11:05.000000000 +0100
@@ -22,7 +22,7 @@
use ex43fmodule
implicit none
!
-! This routine demonstates how to call a bind C function from Fortran
+! This routine demonstrates how to call a bind C function from Fortran
Vec v
PetscErrorCode ierr
PetscInt five
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/src/vec/vec/tutorials/ex7f.F90 petsc-3.18.5+dfsg1/src/vec/vec/tutorials/ex7f.F90
--- petsc-3.18.4+dfsg1/src/vec/vec/tutorials/ex7f.F90 2022-10-01 06:12:21.000000000 +0200
+++ petsc-3.18.5+dfsg1/src/vec/vec/tutorials/ex7f.F90 2023-02-27 23:11:05.000000000 +0100
@@ -5,7 +5,7 @@
use petscvec
implicit none
!
-! This routine demonstates how a computational module may be written
+! This routine demonstrates how a computational module may be written
! in Fortran and called from a C routine, passing down PETSc objects.
!
diff -Nru --exclude '*doc*' petsc-3.18.4+dfsg1/TAGS petsc-3.18.5+dfsg1/TAGS
--- petsc-3.18.4+dfsg1/TAGS 2023-01-31 07:04:23.000000000 +0100
+++ petsc-3.18.5+dfsg1/TAGS 2023-02-27 23:31:42.000000000 +0100
@@ -508,6 +508,14 @@
LIBBASE 7,124
LOCDIR 8,147
+src/vec/vec/tutorials/ex7f.F90,28
+ex7f.F90:^?ex7f.F90^A,1
+ subroutine ex7f(3,4
+
+src/vec/vec/tutorials/ex43f.F90,39
+ex43f.F90:^?ex43f.F90^A,1
+ subroutine fillupvector(6,114
+
src/vec/vec/tutorials/ex42a.c,43
ex42a.c:^?ex42a.c^A,1
static char help[help2,1
@@ -543,10 +551,6 @@
static char help[help2,1
int main(12,333
-src/vec/vec/tutorials/ex7f.F90,28
-ex7f.F90:^?ex7f.F90^A,1
- subroutine ex7f(3,4
-
src/vec/vec/tutorials/ex7.c,173
ex7.c:^?ex7.c^A,1
static char help[help2,1
@@ -572,10 +576,6 @@
static char help[help2,1
int main(6,100
-src/vec/vec/tutorials/ex43f.F90,39
-ex43f.F90:^?ex43f.F90^A,1
- subroutine fillupvector(6,114
-
src/vec/vec/tutorials/ex43.c,37
ex43.c:^?ex43.c^A,1
PETSC_INTERN void fillupvector(4,24
@@ -671,6 +671,56 @@
static char help[help2,1
int main(13,283
+src/vec/vec/tests/ex49.c,50
+ex49.c:^?ex49.c^A,1
+static const char help[help1,0
+int main(21,954
+
+src/vec/vec/tests/ex48.c,1669
+ex48.c:^?ex48.c^A,1
+static char help[help2,1
+static PetscInt n 7,108
+static PetscBool verbose 8,164
+#define SLEN 9,204
+#define nap 12,262
+static const char *apaths[apaths13,276
+#define np 19,473
+static const char *paths[paths21,551
+static const PetscInt paths2apaths[paths2apaths50,1065
+#define ns 79,1270
+static const char *datasets[datasets81,1358
+static inline PetscErrorCode shouldExist(84,1506
+static inline PetscErrorCode isPop(99,1857
+static inline PetscErrorCode isDot(106,2022
+static inline PetscErrorCode isRoot(113,2187
+static inline PetscErrorCode compare(124,2441
+static inline PetscErrorCode alterString(174,4145
+static PetscErrorCode hasGroupOrDataset(192,4677
+#define nt 207,5026
+typedef struct _n_Capsule *Capsule;Capsule208,5065
+struct _n_Capsule 209,5101
+ char names[names210,5121
+ PetscDataType types[types211,5154
+ char typeNames[typeNames212,5181
+ size_t sizes[sizes213,5218
+ void *vals[vals214,5245
+ PetscInt id,215,5271
+ PetscInt id, ntypes;215,5271
+static PetscErrorCode CapsuleCreate(218,5303
+#undef nt260,6815
+static PetscErrorCode CapsuleWriteAttributes(262,6826
+static PetscErrorCode CapsuleReadAndCompareAttributes(276,7237
+static PetscErrorCode CapsuleDestroy(327,9578
+static PetscErrorCode testGroupsDatasets(338,9832
+static inline PetscErrorCode formPath(468,15303
+static PetscErrorCode testAttributesAbsolutePath(488,15976
+static PetscErrorCode testAttributesPushedPath(581,19762
+static PetscErrorCode testObjectAttributes(658,22850
+static PetscErrorCode testAttributesDefaultValue(750,26297
+#define nv 752,26368
+#undef nv801,29596
+int main(805,29635
+
src/vec/vec/tests/ex50.c,44
ex50.c:^?ex50.c^A,1
static char help[help1,0
@@ -751,56 +801,6 @@
static char help[help2,1
int main(8,198
-src/vec/vec/tests/ex49.c,50
-ex49.c:^?ex49.c^A,1
-static const char help[help1,0
-int main(21,954
-
-src/vec/vec/tests/ex48.c,1669
-ex48.c:^?ex48.c^A,1
-static char help[help2,1
-static PetscInt n 7,108
-static PetscBool verbose 8,164
-#define SLEN 9,204
-#define nap 12,262
-static const char *apaths[apaths13,276
-#define np 19,473
-static const char *paths[paths21,551
-static const PetscInt paths2apaths[paths2apaths50,1065
-#define ns 79,1270
-static const char *datasets[datasets81,1358
-static inline PetscErrorCode shouldExist(84,1506
-static inline PetscErrorCode isPop(99,1857
-static inline PetscErrorCode isDot(106,2022
-static inline PetscErrorCode isRoot(113,2187
-static inline PetscErrorCode compare(124,2441
-static inline PetscErrorCode alterString(174,4145
-static PetscErrorCode hasGroupOrDataset(192,4677
-#define nt 207,5026
-typedef struct _n_Capsule *Capsule;Capsule208,5065
-struct _n_Capsule 209,5101
- char names[names210,5121
- PetscDataType types[types211,5154
- char typeNames[typeNames212,5181
- size_t sizes[sizes213,5218
- void *vals[vals214,5245
- PetscInt id,215,5271
- PetscInt id, ntypes;215,5271
-static PetscErrorCode CapsuleCreate(218,5303
-#undef nt260,6815
-static PetscErrorCode CapsuleWriteAttributes(262,6826
-static PetscErrorCode CapsuleReadAndCompareAttributes(276,7237
-static PetscErrorCode CapsuleDestroy(327,9578
-static PetscErrorCode testGroupsDatasets(338,9832
-static inline PetscErrorCode formPath(468,15303
-static PetscErrorCode testAttributesAbsolutePath(488,15976
-static PetscErrorCode testAttributesPushedPath(581,19762
-static PetscErrorCode testObjectAttributes(658,22850
-static PetscErrorCode testAttributesDefaultValue(750,26297
-#define nv 752,26368
-#undef nv801,29596
-int main(805,29635
-
src/vec/vec/tests/ex47.c,43
ex47.c:^?ex47.c^A,1
static char help[help2,1
@@ -1085,56 +1085,47 @@
PetscErrorCode VecGetLocalSize(841,29392
PetscErrorCode VecGetOwnershipRange(877,30463
PetscErrorCode VecGetOwnershipRanges(916,31682
-PetscErrorCode VecSetOption(958,33463
-PetscErrorCode VecDuplicateVecs_Default(969,33790
-PetscErrorCode VecDestroyVecs_Default(980,34194
-PetscErrorCode VecResetArray(1004,34748
-PetscErrorCode VecLoad(1072,37911
-PetscErrorCode VecReciprocal(1115,39548
-PetscErrorCode VecSetOperation(1154,40770
-PetscErrorCode VecStashSetInitialSize(1197,42348
-PetscErrorCode VecConjugate(1218,42844
-PetscErrorCode VecSetRandom(1257,43921
-PetscErrorCode VecZeroEntries(1296,45120
-static PetscErrorCode VecSetTypeFromOptions_Private(1316,45585
-PetscErrorCode VecSetFromOptions(1358,46737
-PetscErrorCode VecSetSizes(1404,48449
-PetscErrorCode VecSetBlockSize(1438,49682
-PetscErrorCode VecGetBlockSize(1467,50470
-PetscErrorCode VecSetOptionsPrefix(1494,51177
-PetscErrorCode VecAppendOptionsPrefix(1520,51891
-PetscErrorCode VecGetOptionsPrefix(1548,52559
-PetscErrorCode VecSetUp(1572,53172
-PetscErrorCode VecCopy(1620,54484
-PetscErrorCode VecSwap(1697,57223
-PetscErrorCode VecStashViewFromOptions(1749,59168
-PetscErrorCode VecStashView(1781,60111
-PetscErrorCode PetscOptionsGetVec(1835,62405
-PetscErrorCode VecGetLayout(1872,63387
-PetscErrorCode VecSetLayout(1897,63995
-PetscErrorCode VecSetInf(1905,64196
-PetscErrorCode VecBindToCPU(1934,64873
-PetscErrorCode VecBoundToCPU(1962,65477
-PetscErrorCode VecSetBindingPropagates(1994,66625
-PetscErrorCode VecGetBindingPropagates(2017,67267
-PetscErrorCode VecSetPinnedMemoryMin(2048,68230
-PetscErrorCode VecGetPinnedMemoryMin(2073,68807
-PetscErrorCode VecGetOffloadMask(2099,69421
-PETSC_EXTERN PetscErrorCode VecViennaCLGetCLContext(2109,69675
-PETSC_EXTERN PetscErrorCode VecViennaCLGetCLQueue(2114,69877
-PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMem(2119,70085
-PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMemRead(2124,70281
-PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMemWrite(2129,70481
-PETSC_EXTERN PetscErrorCode VecViennaCLRestoreCLMemWrite(2134,70682
-
-src/vec/vec/interface/vecreg.c,233
-vecreg.c:^?vecreg.c^A,1
-PetscFunctionList VecList 4,59
-PetscBool VecRegisterAllCalled 5,106
-PetscErrorCode VecSetType(29,765
-PetscErrorCode VecGetType(109,3535
-PetscErrorCode VecGetRootType_Private(119,3789
-PetscErrorCode VecRegister(177,5470
+PetscErrorCode VecSetOption(958,33464
+PetscErrorCode VecDuplicateVecs_Default(969,33791
+PetscErrorCode VecDestroyVecs_Default(980,34195
+PetscErrorCode VecResetArray(1004,34749
+PetscErrorCode VecLoad(1072,37912
+PetscErrorCode VecReciprocal(1115,39549
+PetscErrorCode VecSetOperation(1154,40771
+PetscErrorCode VecStashSetInitialSize(1197,42349
+PetscErrorCode VecConjugate(1218,42845
+PetscErrorCode VecSetRandom(1257,43922
+PetscErrorCode VecZeroEntries(1296,45121
+static PetscErrorCode VecSetTypeFromOptions_Private(1316,45586
+PetscErrorCode VecSetFromOptions(1358,46738
+PetscErrorCode VecSetSizes(1404,48450
+PetscErrorCode VecSetBlockSize(1438,49683
+PetscErrorCode VecGetBlockSize(1467,50471
+PetscErrorCode VecSetOptionsPrefix(1494,51178
+PetscErrorCode VecAppendOptionsPrefix(1520,51892
+PetscErrorCode VecGetOptionsPrefix(1548,52560
+PetscErrorCode VecSetUp(1572,53173
+PetscErrorCode VecCopy(1620,54485
+PetscErrorCode VecSwap(1697,57224
+PetscErrorCode VecStashViewFromOptions(1749,59169
+PetscErrorCode VecStashView(1781,60112
+PetscErrorCode PetscOptionsGetVec(1835,62406
+PetscErrorCode VecGetLayout(1872,63388
+PetscErrorCode VecSetLayout(1897,63996
+PetscErrorCode VecSetInf(1905,64197
+PetscErrorCode VecBindToCPU(1934,64874
+PetscErrorCode VecBoundToCPU(1962,65478
+PetscErrorCode VecSetBindingPropagates(1994,66626
+PetscErrorCode VecGetBindingPropagates(2017,67268
+PetscErrorCode VecSetPinnedMemoryMin(2048,68231
+PetscErrorCode VecGetPinnedMemoryMin(2073,68808
+PetscErrorCode VecGetOffloadMask(2099,69422
+PETSC_EXTERN PetscErrorCode VecViennaCLGetCLContext(2109,69676
+PETSC_EXTERN PetscErrorCode VecViennaCLGetCLQueue(2114,69878
+PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMem(2119,70086
+PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMemRead(2124,70282
+PETSC_EXTERN PetscErrorCode VecViennaCLGetCLMemWrite(2129,70482
+PETSC_EXTERN PetscErrorCode VecViennaCLRestoreCLMemWrite(2134,70683
src/vec/vec/interface/rvector.c,4686
rvector.c:^?rvector.c^A,1
@@ -1155,91 +1146,100 @@
PetscErrorCode VecAYPX(629,20194
PetscErrorCode VecAXPBY(677,21591
PetscErrorCode VecAXPBYPCZ(723,23047
-PetscErrorCode VecWAXPY(777,24950
-PetscErrorCode VecSetValues(847,27598
-PetscErrorCode VecGetValues(894,29147
-PetscErrorCode VecSetValuesBlocked(943,30911
-PetscErrorCode VecSetValuesLocal(991,32604
-PetscErrorCode VecSetValuesBlockedLocal(1049,34849
-PetscErrorCode VecMTDot(1100,36461
-PetscErrorCode VecMDot(1152,37956
-PetscErrorCode VecMAXPY(1196,39230
-PetscErrorCode VecConcatenate(1260,41966
-PetscErrorCode VecGetSubVectorContiguityAndBS_Private(1324,44194
-PetscErrorCode VecGetSubVectorThroughVecScatter_Private(1363,45824
-PetscErrorCode VecGetSubVector(1409,47539
-PetscErrorCode VecRestoreSubVector(1525,52263
-PetscErrorCode VecCreateLocalVector(1636,56578
-PetscErrorCode VecGetLocalVectorRead(1692,58540
-PetscErrorCode VecRestoreLocalVectorRead(1726,59638
-PetscErrorCode VecGetLocalVector(1773,61242
-PetscErrorCode VecRestoreLocalVector(1805,62284
-PetscErrorCode VecGetArray(1862,64144
-PetscErrorCode VecRestoreArray(1889,65229
-PetscErrorCode VecGetArrayRead(1925,66612
-PetscErrorCode VecRestoreArrayRead(1955,67544
-PetscErrorCode VecGetArrayWrite(1992,68937
-PetscErrorCode VecRestoreArrayWrite(2020,69807
-PetscErrorCode VecGetArrays(2053,70746
-PetscErrorCode VecRestoreArrays(2090,71924
-PetscErrorCode VecGetArrayAndMemType(2127,73502
-PetscErrorCode VecRestoreArrayAndMemType(2160,74627
-PetscErrorCode VecGetArrayReadAndMemType(2197,75937
-PetscErrorCode VecRestoreArrayReadAndMemType(2230,77038
-PetscErrorCode VecGetArrayWriteAndMemType(2267,78261
-PetscErrorCode VecRestoreArrayWriteAndMemType(2301,79373
-PetscErrorCode VecPlaceArray(2342,80783
-PetscErrorCode VecReplaceArray(2375,81787
-PETSC_EXTERN PetscErrorCode VecCUDAGetArray(2416,83270
-PETSC_EXTERN PetscErrorCode VecCUDARestoreArray(2448,84221
-PETSC_EXTERN PetscErrorCode VecCUDAGetArrayRead(2490,85747
-PETSC_EXTERN PetscErrorCode VecCUDARestoreArrayRead(2516,86678
-PETSC_EXTERN PetscErrorCode VecCUDAGetArrayWrite(2552,87928
-PETSC_EXTERN PetscErrorCode VecCUDARestoreArrayWrite(2584,88942
-PetscErrorCode VecCUDAPlaceArray(2621,90257
-PetscErrorCode VecCUDAReplaceArray(2658,91763
-PetscErrorCode VecCUDAResetArray(2687,92810
-PETSC_EXTERN PetscErrorCode VecHIPGetArray(2735,94538
-PETSC_EXTERN PetscErrorCode VecHIPRestoreArray(2766,95474
-PETSC_EXTERN PetscErrorCode VecHIPGetArrayRead(2808,96978
-PETSC_EXTERN PetscErrorCode VecHIPRestoreArrayRead(2840,98021
-PETSC_EXTERN PetscErrorCode VecHIPGetArrayWrite(2876,99260
-PETSC_EXTERN PetscErrorCode VecHIPRestoreArrayWrite(2907,100256
-PetscErrorCode VecHIPPlaceArray(2944,101541
-PetscErrorCode VecHIPReplaceArray(2981,103036
-PetscErrorCode VecHIPResetArray(3007,103879
-PetscErrorCode VecGetArray2d(3254,110773
-PetscErrorCode VecGetArray2dWrite(3304,112877
-PetscErrorCode VecRestoreArray2d(3350,114746
-PetscErrorCode VecRestoreArray2dWrite(3391,116336
-PetscErrorCode VecGetArray1d(3433,117919
-PetscErrorCode VecGetArray1dWrite(3476,119612
-PetscErrorCode VecRestoreArray1d(3516,121188
-PetscErrorCode VecRestoreArray1dWrite(3550,122521
-PetscErrorCode VecGetArray3d(3592,124336
-PetscErrorCode VecGetArray3dWrite(3647,126828
-PetscErrorCode VecRestoreArray3d(3699,129089
-PetscErrorCode VecRestoreArray3dWrite(3742,130843
-PetscErrorCode VecGetArray4d(3791,132940
-PetscErrorCode VecGetArray4dWrite(3852,135848
-PetscErrorCode VecRestoreArray4d(3909,138528
-PetscErrorCode VecRestoreArray4dWrite(3954,140434
-PetscErrorCode VecGetArray2dRead(3999,142324
-PetscErrorCode VecRestoreArray2dRead(4045,144224
-PetscErrorCode VecGetArray1dRead(4087,145813
-PetscErrorCode VecRestoreArray1dRead(4127,147425
-PetscErrorCode VecGetArray3dRead(4169,149250
-PetscErrorCode VecRestoreArray3dRead(4221,151568
-PetscErrorCode VecGetArray4dRead(4270,153671
-PetscErrorCode VecRestoreArray4dRead(4328,156404
-PetscErrorCode VecLockGet(4360,157403
-PetscErrorCode VecLockGetLocation(4368,157573
-PetscErrorCode VecLockReadPush(4404,158790
-PetscErrorCode VecLockReadPop(4440,160054
+PetscErrorCode VecWAXPY(777,24951
+PetscErrorCode VecSetValues(847,27599
+PetscErrorCode VecGetValues(894,29148
+PetscErrorCode VecSetValuesBlocked(943,30912
+PetscErrorCode VecSetValuesLocal(991,32605
+PetscErrorCode VecSetValuesBlockedLocal(1049,34850
+PetscErrorCode VecMTDot(1100,36462
+PetscErrorCode VecMDot(1152,37957
+PetscErrorCode VecMAXPY(1196,39231
+PetscErrorCode VecConcatenate(1260,41967
+PetscErrorCode VecGetSubVectorContiguityAndBS_Private(1324,44195
+PetscErrorCode VecGetSubVectorThroughVecScatter_Private(1363,45825
+PetscErrorCode VecGetSubVector(1409,47540
+PetscErrorCode VecRestoreSubVector(1525,52264
+PetscErrorCode VecCreateLocalVector(1636,56579
+PetscErrorCode VecGetLocalVectorRead(1692,58541
+PetscErrorCode VecRestoreLocalVectorRead(1726,59639
+PetscErrorCode VecGetLocalVector(1773,61243
+PetscErrorCode VecRestoreLocalVector(1805,62285
+PetscErrorCode VecGetArray(1862,64145
+PetscErrorCode VecRestoreArray(1889,65230
+PetscErrorCode VecGetArrayRead(1925,66613
+PetscErrorCode VecRestoreArrayRead(1955,67545
+PetscErrorCode VecGetArrayWrite(1992,68938
+PetscErrorCode VecRestoreArrayWrite(2020,69808
+PetscErrorCode VecGetArrays(2053,70747
+PetscErrorCode VecRestoreArrays(2090,71925
+PetscErrorCode VecGetArrayAndMemType(2127,73503
+PetscErrorCode VecRestoreArrayAndMemType(2160,74628
+PetscErrorCode VecGetArrayReadAndMemType(2197,75938
+PetscErrorCode VecRestoreArrayReadAndMemType(2230,77039
+PetscErrorCode VecGetArrayWriteAndMemType(2267,78262
+PetscErrorCode VecRestoreArrayWriteAndMemType(2301,79374
+PetscErrorCode VecPlaceArray(2342,80784
+PetscErrorCode VecReplaceArray(2375,81788
+PETSC_EXTERN PetscErrorCode VecCUDAGetArray(2416,83271
+PETSC_EXTERN PetscErrorCode VecCUDARestoreArray(2448,84222
+PETSC_EXTERN PetscErrorCode VecCUDAGetArrayRead(2490,85748
+PETSC_EXTERN PetscErrorCode VecCUDARestoreArrayRead(2516,86679
+PETSC_EXTERN PetscErrorCode VecCUDAGetArrayWrite(2552,87929
+PETSC_EXTERN PetscErrorCode VecCUDARestoreArrayWrite(2584,88943
+PetscErrorCode VecCUDAPlaceArray(2621,90258
+PetscErrorCode VecCUDAReplaceArray(2658,91764
+PetscErrorCode VecCUDAResetArray(2687,92811
+PETSC_EXTERN PetscErrorCode VecHIPGetArray(2735,94539
+PETSC_EXTERN PetscErrorCode VecHIPRestoreArray(2766,95475
+PETSC_EXTERN PetscErrorCode VecHIPGetArrayRead(2808,96979
+PETSC_EXTERN PetscErrorCode VecHIPRestoreArrayRead(2840,98022
+PETSC_EXTERN PetscErrorCode VecHIPGetArrayWrite(2876,99261
+PETSC_EXTERN PetscErrorCode VecHIPRestoreArrayWrite(2907,100257
+PetscErrorCode VecHIPPlaceArray(2944,101542
+PetscErrorCode VecHIPReplaceArray(2981,103037
+PetscErrorCode VecHIPResetArray(3007,103880
+PetscErrorCode VecGetArray2d(3254,110774
+PetscErrorCode VecGetArray2dWrite(3304,112878
+PetscErrorCode VecRestoreArray2d(3350,114747
+PetscErrorCode VecRestoreArray2dWrite(3391,116337
+PetscErrorCode VecGetArray1d(3433,117920
+PetscErrorCode VecGetArray1dWrite(3476,119613
+PetscErrorCode VecRestoreArray1d(3516,121189
+PetscErrorCode VecRestoreArray1dWrite(3550,122522
+PetscErrorCode VecGetArray3d(3592,124337
+PetscErrorCode VecGetArray3dWrite(3647,126829
+PetscErrorCode VecRestoreArray3d(3699,129090
+PetscErrorCode VecRestoreArray3dWrite(3742,130844
+PetscErrorCode VecGetArray4d(3791,132941
+PetscErrorCode VecGetArray4dWrite(3852,135849
+PetscErrorCode VecRestoreArray4d(3909,138529
+PetscErrorCode VecRestoreArray4dWrite(3954,140435
+PetscErrorCode VecGetArray2dRead(3999,142325
+PetscErrorCode VecRestoreArray2dRead(4045,144225
+PetscErrorCode VecGetArray1dRead(4087,145814
+PetscErrorCode VecRestoreArray1dRead(4127,147426
+PetscErrorCode VecGetArray3dRead(4169,149251
+PetscErrorCode VecRestoreArray3dRead(4221,151569
+PetscErrorCode VecGetArray4dRead(4270,153672
+PetscErrorCode VecRestoreArray4dRead(4328,156405
+PetscErrorCode VecLockGet(4360,157404
+PetscErrorCode VecLockGetLocation(4368,157574
+PetscErrorCode VecLockReadPush(4404,158791
+PetscErrorCode VecLockReadPop(4440,160055
PetscErrorCode VecLockWriteSet(4485,161770
PetscErrorCode VecLockPush(4507,162617
PetscErrorCode VecLockPop(4521,162878
+src/vec/vec/interface/vecreg.c,233
+vecreg.c:^?vecreg.c^A,1
+PetscFunctionList VecList 4,59
+PetscBool VecRegisterAllCalled 5,106
+PetscErrorCode VecSetType(29,765
+PetscErrorCode VecGetType(109,3535
+PetscErrorCode VecGetRootType_Private(119,3789
+PetscErrorCode VecRegister(177,5470
+
src/vec/vec/interface/vecregall.c,39
vecregall.c:^?vecregall.c^A,1
PetscErrorCode VecRegisterAll(41,1341
@@ -1909,37 +1909,37 @@
static PetscErrorCode VecMax_Nest(382,9760
static PetscErrorCode VecView_Nest(415,10583
static PetscErrorCode VecSize_Nest_Recursive(447,11901
-static PetscErrorCode VecGetSize_Nest(473,12642
-static PetscErrorCode VecGetLocalSize_Nest(481,12853
-static PetscErrorCode VecMaxPointwiseDivide_Nest(488,12987
-static PetscErrorCode VecGetSubVector_Nest(507,13460
-static PetscErrorCode VecRestoreSubVector_Nest(527,13997
-static PetscErrorCode VecGetArray_Nest(535,14202
-static PetscErrorCode VecRestoreArray_Nest(564,15167
-static PetscErrorCode VecRestoreArrayRead_Nest(594,16163
-static PetscErrorCode VecConcatenate_Nest(601,16321
-static PetscErrorCode VecCreateLocalVector_Nest(608,16587
-static PetscErrorCode VecGetLocalVector_Nest(634,17387
-static PetscErrorCode VecRestoreLocalVector_Nest(647,17815
-static PetscErrorCode VecGetLocalVectorRead_Nest(661,18306
-static PetscErrorCode VecRestoreLocalVectorRead_Nest(674,18742
-static PetscErrorCode VecSetRandom_Nest(687,19186
-static PetscErrorCode VecNestSetOps_Private(697,19424
-static PetscErrorCode VecNestGetSubVecs_Private(776,23017
-PetscErrorCode VecNestGetSubVec_Nest(792,23513
-PetscErrorCode VecNestGetSubVec(818,24072
-PetscErrorCode VecNestGetSubVecs_Nest(825,24270
-PetscErrorCode VecNestGetSubVecs(858,24945
-static PetscErrorCode VecNestSetSubVec_Private(865,25144
-PetscErrorCode VecNestSetSubVec_Nest(933,27503
-PetscErrorCode VecNestSetSubVec(958,28184
-PetscErrorCode VecNestSetSubVecs_Nest(965,28379
-PetscErrorCode VecNestSetSubVecs(994,29203
-PetscErrorCode VecNestGetSize_Nest(1001,29431
-PetscErrorCode VecNestGetSize(1027,29842
-static PetscErrorCode VecSetUp_Nest_Private(1036,30090
-static PetscErrorCode VecSetUp_NestIS_Private(1061,30783
-PetscErrorCode VecCreateNest(1112,32696
+static PetscErrorCode VecGetSize_Nest(473,12643
+static PetscErrorCode VecGetLocalSize_Nest(481,12855
+static PetscErrorCode VecMaxPointwiseDivide_Nest(488,12989
+static PetscErrorCode VecGetSubVector_Nest(507,13462
+static PetscErrorCode VecRestoreSubVector_Nest(527,13999
+static PetscErrorCode VecGetArray_Nest(535,14204
+static PetscErrorCode VecRestoreArray_Nest(564,15169
+static PetscErrorCode VecRestoreArrayRead_Nest(594,16165
+static PetscErrorCode VecConcatenate_Nest(601,16323
+static PetscErrorCode VecCreateLocalVector_Nest(608,16589
+static PetscErrorCode VecGetLocalVector_Nest(634,17389
+static PetscErrorCode VecRestoreLocalVector_Nest(647,17817
+static PetscErrorCode VecGetLocalVectorRead_Nest(661,18308
+static PetscErrorCode VecRestoreLocalVectorRead_Nest(674,18744
+static PetscErrorCode VecSetRandom_Nest(687,19188
+static PetscErrorCode VecNestSetOps_Private(697,19426
+static PetscErrorCode VecNestGetSubVecs_Private(776,23019
+PetscErrorCode VecNestGetSubVec_Nest(792,23515
+PetscErrorCode VecNestGetSubVec(818,24074
+PetscErrorCode VecNestGetSubVecs_Nest(825,24272
+PetscErrorCode VecNestGetSubVecs(858,24947
+static PetscErrorCode VecNestSetSubVec_Private(865,25146
+PetscErrorCode VecNestSetSubVec_Nest(933,27505
+PetscErrorCode VecNestSetSubVec(958,28186
+PetscErrorCode VecNestSetSubVecs_Nest(965,28381
+PetscErrorCode VecNestSetSubVecs(994,29205
+PetscErrorCode VecNestGetSize_Nest(1001,29433
+PetscErrorCode VecNestGetSize(1027,29844
+static PetscErrorCode VecSetUp_Nest_Private(1036,30092
+static PetscErrorCode VecSetUp_NestIS_Private(1061,30785
+PetscErrorCode VecCreateNest(1112,32698
src/vec/vec/impls/nest/vecnestimpl.h,240
vecnestimpl.h:^?vecnestimpl.h^A,1
@@ -1976,6 +1976,27 @@
PETSC_EXTERN void vecnestsetsubvecs_(27,794
PETSC_EXTERN void veccreatenest_(32,944
+src/vec/vec/impls/mpi/pdvec.c,826
+pdvec.c:^?pdvec.c^A,1
+static PetscErrorCode VecResetPreallocationCOO_MPI(11,279
+PetscErrorCode VecDestroy_MPI(27,732
+PetscErrorCode VecView_MPI_ASCII(56,1701
+PetscErrorCode VecView_MPI_Binary(375,17824
+PetscErrorCode VecView_MPI_Draw_LG(381,17953
+PetscErrorCode VecView_MPI_Draw(434,19953
+PetscErrorCode VecView_MPI_Matlab(489,22112
+PetscErrorCode VecView_MPI_ADIOS(526,23456
+PetscErrorCode VecView_MPI_HDF5(554,24420
+PETSC_EXTERN PetscErrorCode VecView_MPI(742,31609
+PetscErrorCode VecGetSize_MPI(808,33810
+PetscErrorCode VecGetValues_MPI(815,33935
+PetscErrorCode VecSetValues_MPI(832,34544
+PetscErrorCode VecSetValuesBlocked_MPI(874,36652
+PetscErrorCode VecAssemblyBegin_MPI(926,38793
+PetscErrorCode VecAssemblyEnd_MPI(959,40440
+PetscErrorCode VecSetPreallocationCOO_MPI(1004,42137
+PetscErrorCode VecSetValuesCOO_MPI(1231,52127
+
src/vec/vec/impls/mpi/pbvec.c,1056
pbvec.c:^?pbvec.c^A,1
PetscErrorCode VecDot_MPI(8,165
@@ -2075,27 +2096,6 @@
PetscReal v;114,3597
PetscInt i;115,3616
-src/vec/vec/impls/mpi/pdvec.c,826
-pdvec.c:^?pdvec.c^A,1
-static PetscErrorCode VecResetPreallocationCOO_MPI(11,279
-PetscErrorCode VecDestroy_MPI(27,732
-PetscErrorCode VecView_MPI_ASCII(56,1701
-PetscErrorCode VecView_MPI_Binary(375,17824
-PetscErrorCode VecView_MPI_Draw_LG(381,17953
-PetscErrorCode VecView_MPI_Draw(434,19953
-PetscErrorCode VecView_MPI_Matlab(489,22112
-PetscErrorCode VecView_MPI_ADIOS(526,23456
-PetscErrorCode VecView_MPI_HDF5(554,24420
-PETSC_EXTERN PetscErrorCode VecView_MPI(742,31609
-PetscErrorCode VecGetSize_MPI(808,33810
-PetscErrorCode VecGetValues_MPI(815,33935
-PetscErrorCode VecSetValues_MPI(832,34544
-PetscErrorCode VecSetValuesBlocked_MPI(874,36652
-PetscErrorCode VecAssemblyBegin_MPI(926,38793
-PetscErrorCode VecAssemblyEnd_MPI(959,40440
-PetscErrorCode VecSetPreallocationCOO_MPI(1004,42137
-PetscErrorCode VecSetValuesCOO_MPI(1231,52127
-
src/vec/vec/impls/mpi/makefile,98
makefile:^?makefile^A,1
SOURCEC 3,37
@@ -2965,28 +2965,28 @@
PetscErrorCode PetscSFGetMultiSF(1169,44180
PetscErrorCode PetscSFCreateEmbeddedRootSF(1259,48719
PetscErrorCode PetscSFCreateEmbeddedLeafSF(1344,52194
-PetscErrorCode PetscSFBcastBegin(1407,54970
-PetscErrorCode PetscSFBcastWithMemTypeBegin(1442,56288
-PetscErrorCode PetscSFBcastEnd(1471,57304
-PetscErrorCode PetscSFReduceBegin(1504,58525
-PetscErrorCode PetscSFReduceWithMemTypeBegin(1539,59755
-PetscErrorCode PetscSFReduceEnd(1568,60748
-PetscErrorCode PetscSFFetchAndOpBegin(1604,62278
-PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(1647,64103
-PetscErrorCode PetscSFFetchAndOpEnd(1678,65536
-PetscErrorCode PetscSFComputeDegreeBegin(1706,66488
-PetscErrorCode PetscSFComputeDegreeEnd(1744,67897
-PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(1781,69366
-PetscErrorCode PetscSFGatherBegin(1821,70808
-PetscErrorCode PetscSFGatherEnd(1850,71647
-PetscErrorCode PetscSFScatterBegin(1878,72509
-PetscErrorCode PetscSFScatterEnd(1907,73374
-static PetscErrorCode PetscSFCheckLeavesUnique_Private(1918,73736
-PetscErrorCode PetscSFCompose(1962,75361
-PetscErrorCode PetscSFComposeInverse(2066,80199
-PetscErrorCode PetscSFCreateLocalSF_Private(2156,83812
-PetscErrorCode PetscSFBcastToZero_Private(2200,85534
-PetscErrorCode PetscSFConcatenate(2243,87290
+PetscErrorCode PetscSFBcastBegin(1407,54971
+PetscErrorCode PetscSFBcastWithMemTypeBegin(1442,56289
+PetscErrorCode PetscSFBcastEnd(1471,57305
+PetscErrorCode PetscSFReduceBegin(1504,58527
+PetscErrorCode PetscSFReduceWithMemTypeBegin(1539,59757
+PetscErrorCode PetscSFReduceEnd(1568,60750
+PetscErrorCode PetscSFFetchAndOpBegin(1604,62280
+PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(1647,64105
+PetscErrorCode PetscSFFetchAndOpEnd(1678,65538
+PetscErrorCode PetscSFComputeDegreeBegin(1706,66490
+PetscErrorCode PetscSFComputeDegreeEnd(1744,67899
+PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(1781,69368
+PetscErrorCode PetscSFGatherBegin(1821,70810
+PetscErrorCode PetscSFGatherEnd(1850,71649
+PetscErrorCode PetscSFScatterBegin(1878,72511
+PetscErrorCode PetscSFScatterEnd(1907,73376
+static PetscErrorCode PetscSFCheckLeavesUnique_Private(1918,73738
+PetscErrorCode PetscSFCompose(1962,75363
+PetscErrorCode PetscSFComposeInverse(2066,80201
+PetscErrorCode PetscSFCreateLocalSF_Private(2156,83814
+PetscErrorCode PetscSFBcastToZero_Private(2200,85536
+PetscErrorCode PetscSFConcatenate(2243,87292
src/vec/is/sf/interface/sfregi.c,171
sfregi.c:^?sfregi.c^A,1
@@ -3145,25 +3145,6 @@
MANSEC 9,192
SUBMANSEC 10,208
-src/vec/is/sf/impls/basic/sfbasic.h,684
-sfbasic.h:^?sfbasic.h^A,1
-#define __SFBASIC_H2,20
-typedef struct _n_PetscSFLink *PetscSFLink;PetscSFLink6,96
-#define SFBASICHEADER 8,141
- SFBASICHEADER;27,1832
- PetscInt rootbuflen_rmax;29,1881
- PetscInt nRemoteLeafRanks;30,1952
- PetscInt nRemoteLeafRanksMax;31,2009
- PetscInt *leafbufdisp;leafbufdisp33,2079
- PetscInt *leafsigdisp;leafsigdisp34,2240
- PetscInt *leafbufdisp_d;leafbufdisp_d36,2359
- PetscInt *leafsigdisp_d;leafsigdisp_d37,2389
- PetscMPIInt *iranks_d;iranks_d38,2457
- PetscInt *ioffset_d;ioffset_d39,2546
-} PetscSF_Basic;41,2636
-static inline PetscErrorCode PetscSFGetRootInfo_Basic(43,2654
-static inline PetscErrorCode PetscSFGetLeafInfo_Basic(56,3180
-
src/vec/is/sf/impls/basic/sfpack.h,9155
sfpack.h:^?sfpack.h^A,1
#define __SFPACK_H2,19
@@ -3334,6 +3315,49 @@
static inline PetscErrorCode PetscSFLinkGetRootPackOptAndIndices(365,28767
static inline PetscErrorCode PetscSFLinkGetLeafPackOptAndIndices(414,31236
+src/vec/is/sf/impls/basic/sfmpi.c,163
+sfmpi.c:^?sfmpi.c^A,1
+static PetscErrorCode PetscSFLinkStartRequests_MPI(8,322
+static PetscErrorCode PetscSFLinkWaitRequests_MPI(45,1982
+PetscErrorCode PetscSFLinkCreate_MPI(78,3864
+
+src/vec/is/sf/impls/basic/sfbasic.c,926
+sfbasic.c:^?sfbasic.c^A,1
+PETSC_INTERN PetscErrorCode PetscSFSetUp_Basic(8,402
+PETSC_INTERN PetscErrorCode PetscSFReset_Basic(87,4424
+PETSC_INTERN PetscErrorCode PetscSFDestroy_Basic(114,5250
+PETSC_INTERN PetscErrorCode PetscSFView_Basic_PatternAndSizes(125,5498
+PETSC_INTERN PetscErrorCode PetscSFView_Basic(163,7412
+static PetscErrorCode PetscSFBcastBegin_Basic(181,8235
+PETSC_INTERN PetscErrorCode PetscSFBcastEnd_Basic(197,9161
+static inline PetscErrorCode PetscSFLeafToRootBegin_Basic(214,9932
+static PetscErrorCode PetscSFReduceBegin_Basic(227,10537
+PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Basic(237,11014
+PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Basic(249,11514
+static PetscErrorCode PetscSFFetchAndOpEnd_Basic(259,12006
+PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Basic(278,13007
+PETSC_INTERN PetscErrorCode PetscSFCreateEmbeddedRootSF_Basic(294,13697
+PETSC_EXTERN PetscErrorCode PetscSFCreate_Basic(436,19756
+
+src/vec/is/sf/impls/basic/sfbasic.h,684
+sfbasic.h:^?sfbasic.h^A,1
+#define __SFBASIC_H2,20
+typedef struct _n_PetscSFLink *PetscSFLink;PetscSFLink6,96
+#define SFBASICHEADER 8,141
+ SFBASICHEADER;27,1832
+ PetscInt rootbuflen_rmax;29,1881
+ PetscInt nRemoteLeafRanks;30,1952
+ PetscInt nRemoteLeafRanksMax;31,2009
+ PetscInt *leafbufdisp;leafbufdisp33,2079
+ PetscInt *leafsigdisp;leafsigdisp34,2240
+ PetscInt *leafbufdisp_d;leafbufdisp_d36,2359
+ PetscInt *leafsigdisp_d;leafsigdisp_d37,2389
+ PetscMPIInt *iranks_d;iranks_d38,2457
+ PetscInt *ioffset_d;ioffset_d39,2546
+} PetscSF_Basic;41,2636
+static inline PetscErrorCode PetscSFGetRootInfo_Basic(43,2654
+static inline PetscErrorCode PetscSFGetLeafInfo_Basic(56,3180
+
src/vec/is/sf/impls/basic/sfpack.c,2842
sfpack.c:^?sfpack.c^A,1
#define CPPJoin4(12,465
@@ -3405,30 +3429,6 @@
PetscErrorCode PetscSFSetUpPackFields(1345,68627
PetscErrorCode PetscSFResetPackFields(1419,72039
-src/vec/is/sf/impls/basic/sfmpi.c,163
-sfmpi.c:^?sfmpi.c^A,1
-static PetscErrorCode PetscSFLinkStartRequests_MPI(8,322
-static PetscErrorCode PetscSFLinkWaitRequests_MPI(45,1982
-PetscErrorCode PetscSFLinkCreate_MPI(78,3864
-
-src/vec/is/sf/impls/basic/sfbasic.c,926
-sfbasic.c:^?sfbasic.c^A,1
-PETSC_INTERN PetscErrorCode PetscSFSetUp_Basic(8,402
-PETSC_INTERN PetscErrorCode PetscSFReset_Basic(87,4424
-PETSC_INTERN PetscErrorCode PetscSFDestroy_Basic(114,5250
-PETSC_INTERN PetscErrorCode PetscSFView_Basic_PatternAndSizes(125,5498
-PETSC_INTERN PetscErrorCode PetscSFView_Basic(163,7412
-static PetscErrorCode PetscSFBcastBegin_Basic(181,8235
-PETSC_INTERN PetscErrorCode PetscSFBcastEnd_Basic(197,9160
-static inline PetscErrorCode PetscSFLeafToRootBegin_Basic(214,9931
-static PetscErrorCode PetscSFReduceBegin_Basic(227,10536
-PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Basic(237,11013
-PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Basic(249,11513
-static PetscErrorCode PetscSFFetchAndOpEnd_Basic(259,12005
-PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Basic(278,13006
-PETSC_INTERN PetscErrorCode PetscSFCreateEmbeddedRootSF_Basic(294,13695
-PETSC_EXTERN PetscErrorCode PetscSFCreate_Basic(436,19754
-
src/vec/is/sf/impls/basic/makefile,116
makefile:^?makefile^A,1
SOURCEH 3,40
@@ -3459,17 +3459,17 @@
PetscErrorCode PetscSFLinkGetDataBegin_NVSHMEM(339,16331
PetscErrorCode PetscSFLinkGetDataEnd_NVSHMEM(435,20637
__global__ static void WaitAndPutDataToRemotelyAccessible(488,23140
-__global__ static void WaitSignalsFromLocallyAccessible(502,23820
-PetscErrorCode PetscSFLinkPutDataBegin_NVSHMEM(514,24220
-__global__ static void PutDataEnd(587,27850
-PetscErrorCode PetscSFLinkPutDataEnd_NVSHMEM(606,28793
-PetscErrorCode PetscSFLinkSendSignalsToAllowPuttingData_NVSHMEM(640,30161
-static PetscErrorCode PetscSFLinkDestroy_NVSHMEM(668,31328
-PetscErrorCode PetscSFLinkCreate_NVSHMEM(687,32098
-PetscErrorCode PetscNvshmemSum(793,38331
-PetscErrorCode PetscNvshmemMax(803,38662
-PetscErrorCode PetscNvshmemSum(813,38989
-PetscErrorCode PetscNvshmemMax(823,39283
+__global__ static void WaitSignalsFromLocallyAccessible(502,23821
+PetscErrorCode PetscSFLinkPutDataBegin_NVSHMEM(514,24221
+__global__ static void PutDataEnd(587,27851
+PetscErrorCode PetscSFLinkPutDataEnd_NVSHMEM(606,28794
+PetscErrorCode PetscSFLinkSendSignalsToAllowPuttingData_NVSHMEM(640,30162
+static PetscErrorCode PetscSFLinkDestroy_NVSHMEM(668,31329
+PetscErrorCode PetscSFLinkCreate_NVSHMEM(687,32099
+PetscErrorCode PetscNvshmemSum(793,38332
+PetscErrorCode PetscNvshmemMax(803,38663
+PetscErrorCode PetscNvshmemSum(813,38990
+PetscErrorCode PetscNvshmemMax(823,39284
src/vec/is/sf/impls/basic/nvshmem/makefile,118
makefile:^?makefile^A,1
@@ -3890,7 +3890,7 @@
PetscErrorCode PetscSectionGetUseFieldOffsets(3496,121894
PetscErrorCode PetscSectionSetUseFieldOffsets(3517,122507
#define PetscSectionExpandPoints_Loop(3525,122718
-PetscErrorCode PetscSectionExtractDofsFromArray(3559,124225
+PetscErrorCode PetscSectionExtractDofsFromArray(3559,124226
src/vec/is/section/interface/sectionhdf5.c,328
sectionhdf5.c:^?sectionhdf5.c^A,1
@@ -3959,8 +3959,8 @@
PetscErrorCode ISConcatenate(474,13116
PetscErrorCode ISListToPair(547,15586
PetscErrorCode ISPairToList(605,17569
-PetscErrorCode ISEmbed(732,22767
-PetscErrorCode ISSortPermutation(784,24560
+PetscErrorCode ISEmbed(732,22769
+PetscErrorCode ISSortPermutation(784,24563
src/vec/is/is/utils/iscoloring.c,751
iscoloring.c:^?iscoloring.c^A,1
@@ -4149,44 +4149,44 @@
static PetscErrorCode ISGetInfo_Permutation(594,22376
static PetscErrorCode ISGetInfo_Interval(637,23677
static PetscErrorCode ISGetInfo_Identity(691,25589
-PetscErrorCode ISGetInfo(767,28133
-static PetscErrorCode ISCopyInfo(831,30470
-PetscErrorCode ISIdentity(860,31442
-PetscErrorCode ISSetIdentity(885,32205
-PetscErrorCode ISContiguousLocal(911,32901
-PetscErrorCode ISPermutation(945,33997
-PetscErrorCode ISSetPermutation(973,34940
-PetscErrorCode ISDestroy(1011,36000
-PetscErrorCode ISInvertPermutation(1056,37382
-PetscErrorCode ISGetSize(1099,38550
-PetscErrorCode ISGetLocalSize(1122,38965
-PetscErrorCode ISGetLayout(1146,39429
-PetscErrorCode ISSetLayout(1174,40177
-PetscErrorCode ISGetIndices(1223,41554
-PetscErrorCode ISGetMinMax(1252,42246
-PetscErrorCode ISLocate(1275,42812
-PetscErrorCode ISRestoreIndices(1340,44411
-static PetscErrorCode ISGatherTotal_Private(1349,44649
-PetscErrorCode ISGetTotalIndices(1404,46658
-PetscErrorCode ISRestoreTotalIndices(1434,47442
-PetscErrorCode ISGetNonlocalIndices(1474,48742
-PetscErrorCode ISRestoreNonlocalIndices(1509,49870
-PetscErrorCode ISGetNonlocalIS(1540,50927
-PetscErrorCode ISRestoreNonlocalIS(1575,51991
-PetscErrorCode ISViewFromOptions(1602,52880
-PetscErrorCode ISView(1623,53367
-PetscErrorCode ISLoad(1656,54668
-PetscErrorCode ISSort(1686,55669
-PetscErrorCode ISSortRemoveDups(1707,56132
-PetscErrorCode ISToGeneral(1730,56749
-PetscErrorCode ISSorted(1759,57452
-PetscErrorCode ISDuplicate(1783,57945
-PetscErrorCode ISCopy(1808,58418
-PetscErrorCode ISShift(1849,59813
-PetscErrorCode ISOnComm(1892,61549
-PetscErrorCode ISSetBlockSize(1926,62669
-PetscErrorCode ISGetBlockSize(1972,64497
-PetscErrorCode ISGetIndicesCopy(1979,64656
+PetscErrorCode ISGetInfo(767,28134
+static PetscErrorCode ISCopyInfo(831,30471
+PetscErrorCode ISIdentity(860,31443
+PetscErrorCode ISSetIdentity(885,32206
+PetscErrorCode ISContiguousLocal(911,32902
+PetscErrorCode ISPermutation(945,33998
+PetscErrorCode ISSetPermutation(973,34941
+PetscErrorCode ISDestroy(1011,36001
+PetscErrorCode ISInvertPermutation(1056,37383
+PetscErrorCode ISGetSize(1099,38551
+PetscErrorCode ISGetLocalSize(1122,38966
+PetscErrorCode ISGetLayout(1146,39430
+PetscErrorCode ISSetLayout(1174,40178
+PetscErrorCode ISGetIndices(1223,41555
+PetscErrorCode ISGetMinMax(1252,42247
+PetscErrorCode ISLocate(1275,42813
+PetscErrorCode ISRestoreIndices(1340,44412
+static PetscErrorCode ISGatherTotal_Private(1349,44650
+PetscErrorCode ISGetTotalIndices(1404,46659
+PetscErrorCode ISRestoreTotalIndices(1434,47443
+PetscErrorCode ISGetNonlocalIndices(1474,48743
+PetscErrorCode ISRestoreNonlocalIndices(1509,49871
+PetscErrorCode ISGetNonlocalIS(1540,50928
+PetscErrorCode ISRestoreNonlocalIS(1575,51992
+PetscErrorCode ISViewFromOptions(1602,52881
+PetscErrorCode ISView(1623,53368
+PetscErrorCode ISLoad(1656,54669
+PetscErrorCode ISSort(1686,55670
+PetscErrorCode ISSortRemoveDups(1707,56133
+PetscErrorCode ISToGeneral(1730,56750
+PetscErrorCode ISSorted(1759,57453
+PetscErrorCode ISDuplicate(1783,57946
+PetscErrorCode ISCopy(1808,58419
+PetscErrorCode ISShift(1849,59814
+PetscErrorCode ISOnComm(1892,61550
+PetscErrorCode ISSetBlockSize(1926,62670
+PetscErrorCode ISGetBlockSize(1972,64498
+PetscErrorCode ISGetIndicesCopy(1979,64657
src/vec/is/is/interface/isreg.c,212
isreg.c:^?isreg.c^A,1
@@ -5324,46 +5324,46 @@
#define C_0(16,528
#define PETSC_THREAD_SYNC19,641
static PetscErrorCode LandauGPUMapsDestroy(26,752
-static PetscErrorCode energy_f(51,1698
-static PetscErrorCode gamma_m1_f(63,2043
-static PetscErrorCode LandauFormJacobian_Internal(92,2929
-static void zero_bc(611,32285
-#define MATVEC2(617,32729
-static void CircleInflate(625,32912
-static PetscErrorCode GeometryDMLandau(717,35843
-static PetscErrorCode LandauDMCreateVMeshes(737,36521
-static PetscErrorCode SetupDS(918,44558
- PetscReal v_0;961,46474
- PetscReal kT_m;962,46491
- PetscReal n;963,46509
- PetscReal shift;964,46524
-} MaxwellianCtx;965,46543
-static PetscErrorCode maxwellian(967,46561
-PetscErrorCode DMPlexLandauAddMaxwellians(1010,47976
-static PetscErrorCode LandauSetInitialCondition(1054,49694
-static PetscErrorCode adaptToleranceFEM(1065,50141
-static PetscErrorCode adapt(1193,57259
-static PetscErrorCode ProcessOptions(1218,58239
-static PetscErrorCode CreateStaticGPUData(1500,80171
-static void g0_1(1907,105045
-static void g0_fake(1913,105507
-static void g0_r(1920,106016
-static PetscErrorCode MatrixNfDestroy(1925,106481
-static PetscErrorCode LandauCreateJacobianMatrix(1938,106856
-PetscErrorCode DMPlexLandauCreateVelocitySpace(2059,112614
-PetscErrorCode DMPlexLandauAccess(2226,120408
-PetscErrorCode DMPlexLandauDestroyVelocitySpace(2278,122414
-static void f0_s_den(2332,125540
-static void f0_s_mom(2339,126050
-static void f0_s_v2(2345,126607
-static PetscErrorCode gamma_n_f(2353,127175
-static void f0_s_rden(2375,127851
-static void f0_s_rmom(2382,128385
-static void f0_s_rv2(2388,128910
-PetscErrorCode DMPlexLandauPrintNorms(2408,129696
-PetscErrorCode DMPlexLandauCreateMassMatrix(2574,139783
-PetscErrorCode DMPlexLandauIFunction(2693,144905
-PetscErrorCode DMPlexLandauIJacobian(2770,147543
+static PetscErrorCode energy_f(51,1699
+static PetscErrorCode gamma_m1_f(63,2044
+static PetscErrorCode LandauFormJacobian_Internal(92,2930
+static void zero_bc(611,32286
+#define MATVEC2(617,32730
+static void CircleInflate(625,32913
+static PetscErrorCode GeometryDMLandau(717,35844
+static PetscErrorCode LandauDMCreateVMeshes(737,36522
+static PetscErrorCode SetupDS(918,44559
+ PetscReal v_0;961,46475
+ PetscReal kT_m;962,46492
+ PetscReal n;963,46510
+ PetscReal shift;964,46525
+} MaxwellianCtx;965,46544
+static PetscErrorCode maxwellian(967,46562
+PetscErrorCode DMPlexLandauAddMaxwellians(1010,47977
+static PetscErrorCode LandauSetInitialCondition(1054,49695
+static PetscErrorCode adaptToleranceFEM(1065,50142
+static PetscErrorCode adapt(1193,57260
+static PetscErrorCode ProcessOptions(1218,58240
+static PetscErrorCode CreateStaticGPUData(1500,80172
+static void g0_1(1907,105046
+static void g0_fake(1913,105508
+static void g0_r(1920,106017
+static PetscErrorCode MatrixNfDestroy(1925,106482
+static PetscErrorCode LandauCreateJacobianMatrix(1938,106857
+PetscErrorCode DMPlexLandauCreateVelocitySpace(2059,112615
+PetscErrorCode DMPlexLandauAccess(2226,120409
+PetscErrorCode DMPlexLandauDestroyVelocitySpace(2278,122415
+static void f0_s_den(2332,125541
+static void f0_s_mom(2339,126051
+static void f0_s_v2(2345,126608
+static PetscErrorCode gamma_n_f(2353,127176
+static void f0_s_rden(2375,127852
+static void f0_s_rmom(2382,128386
+static void f0_s_rv2(2388,128911
+PetscErrorCode DMPlexLandauPrintNorms(2408,129697
+PetscErrorCode DMPlexLandauCreateMassMatrix(2574,139784
+PetscErrorCode DMPlexLandauIFunction(2693,144906
+PetscErrorCode DMPlexLandauIJacobian(2770,147544
src/ts/utils/dmplexlandau/makefile,131
makefile:^?makefile^A,1
@@ -5392,11 +5392,6 @@
#define GAMMA3(126,7152
PETSC_DEVICE_FUNC_DECL void LandauTensor3DRelativistic(127,7263
-src/ts/utils/dmplexlandau/tutorials/makefile,26
-makefile:^?makefile^A,1
-LOCDIR 3,37
-MANSEC 4,86
-
src/ts/utils/dmplexlandau/tutorials/ex2.c,1817
ex2.c:^?ex2.c^A,1
static char help[help1,0
@@ -5454,6 +5449,11 @@
static PetscErrorCode ProcessREOptions(534,25091
int main(620,31063
+src/ts/utils/dmplexlandau/tutorials/makefile,26
+makefile:^?makefile^A,1
+LOCDIR 3,37
+MANSEC 4,86
+
src/ts/utils/dmplexlandau/tutorials/ex1.c,278
ex1.c:^?ex1.c^A,1
static char help[help1,0
@@ -5538,6 +5538,227 @@
__global__ void __launch_bounds__(539,27206
PetscErrorCode LandauCUDAJacobian(647,32203
+src/ts/tutorials/ex9.c,5792
+ex9.c:^?ex9.c^A,1
+static const char help[help1,0
+static inline PetscReal Sgn(40,3203
+static inline PetscReal Abs(44,3275
+static inline PetscReal Sqr(48,3346
+static inline PetscReal MaxAbs(52,3407
+PETSC_UNUSED static inline PetscReal MinAbs(56,3514
+static inline PetscReal MinMod2(60,3634
+static inline PetscReal MaxMod2(64,3768
+static inline PetscReal MinMod3(68,3902
+static inline PetscReal RangeMod(73,4086
+typedef struct _LimitInfo 80,4384
+ PetscReal hx;81,4412
+ PetscInt m;82,4428
+} *LimitInfo;LimitInfo83,4443
+static void Limit_Upwind(84,4466
+static void Limit_LaxWendroff(89,4633
+static void Limit_BeamWarming(94,4809
+static void Limit_Fromm(99,4985
+static void Limit_Minmod(104,5171
+static void Limit_Superbee(109,5358
+static void Limit_MC(114,5587
+static void Limit_VanLeer(119,5801
+static void Limit_VanAlbada(124,6085
+static void Limit_VanAlbadaTVD(129,6492
+static void Limit_Koren(134,6801
+static void Limit_KorenSym(139,7238
+static void Limit_Koren3(144,7674
+static PetscReal CadaTorrilhonPhiHatR_Eq13(149,7929
+static void Limit_CadaTorrilhon2(153,8124
+static void Limit_CadaTorrilhon3R(158,8370
+static void Limit_CadaTorrilhon3R0p1(168,9041
+static void Limit_CadaTorrilhon3R1(172,9211
+static void Limit_CadaTorrilhon3R10(176,9377
+static void Limit_CadaTorrilhon3R100(180,9545
+ FVBC_PERIODIC,188,9838
+ FVBC_OUTFLOW189,9855
+} FVBCType;190,9870
+static const char *FVBCTypes[FVBCTypes191,9882
+typedef PetscErrorCode (*RiemannFunction)RiemannFunction192,9964
+typedef PetscErrorCode (*ReconstructFunction)ReconstructFunction193,10095
+ PetscErrorCode (*sample)sample196,10242
+ RiemannFunction riemann;197,10355
+ ReconstructFunction characteristic;198,10386
+ PetscErrorCode (*destroy)destroy199,10424
+ void *user;user200,10461
+ PetscInt dof;201,10478
+ char *fieldname[fieldname202,10494
+} PhysicsCtx;203,10520
+ void (*limit)limit206,10552
+ PhysicsCtx physics;207,10637
+ MPI_Comm comm;208,10659
+ char prefix[prefix209,10678
+ PetscScalar *R,R212,10731
+ PetscScalar *R, *Rinv;Rinv212,10731
+ PetscScalar *cjmpLR;cjmpLR213,10816
+ PetscScalar *cslope;cslope214,10920
+ PetscScalar *uLR;uLR215,10998
+ PetscScalar *flux;flux216,11104
+ PetscReal *speeds;speeds217,11157
+ PetscReal cfl_idt;219,11209
+ PetscReal cfl;220,11269
+ PetscReal xmin,221,11286
+ PetscReal xmin, xmax;221,11286
+ PetscInt initial;222,11310
+ PetscBool exact;223,11331
+ FVBCType bctype;224,11350
+} FVCtx;225,11370
+PetscErrorCode RiemannListAdd(227,11380
+PetscErrorCode RiemannListFind(234,11591
+PetscErrorCode ReconstructListAdd(242,11922
+PetscErrorCode ReconstructListFind(249,12131
+static PetscErrorCode PhysicsCharacteristic_Conservative(265,12929
+static PetscErrorCode PhysicsDestroy_SimpleFree(277,13329
+ PetscReal a;287,13580
+} AdvectCtx;288,13620
+static PetscErrorCode PhysicsRiemann_Advect(290,13634
+static PetscErrorCode PhysicsCharacteristic_Advect(302,14018
+static PetscErrorCode PhysicsSample_Advect(313,14321
+static PetscErrorCode PhysicsCreate_Advect(360,15517
+ PetscReal lxf_speed;385,16357
+} BurgersCtx;386,16380
+static PetscErrorCode PhysicsSample_Burgers(388,16395
+static PetscErrorCode PhysicsRiemann_Burgers_Exact(426,17556
+static PetscErrorCode PhysicsRiemann_Burgers_Roe(439,18136
+static PetscErrorCode PhysicsRiemann_Burgers_LxF(451,18611
+static PetscErrorCode PhysicsRiemann_Burgers_Rusanov(465,19064
+static PetscErrorCode PhysicsCreate_Burgers(479,19532
+ PetscReal lxf_speed;520,21069
+ PetscReal a;521,21092
+} TrafficCtx;522,21107
+static inline PetscScalar TrafficFlux(524,21122
+static PetscErrorCode PhysicsSample_Traffic(529,21221
+static PetscErrorCode PhysicsRiemann_Traffic_Exact(554,22110
+static PetscErrorCode PhysicsRiemann_Traffic_Roe(568,22657
+static PetscErrorCode PhysicsRiemann_Traffic_LxF(580,23107
+static PetscErrorCode PhysicsRiemann_Traffic_Rusanov(593,23589
+static PetscErrorCode PhysicsCreate_Traffic(605,24070
+ PetscReal c;658,26142
+ PetscReal z;659,26198
+} AcousticsCtx;660,26249
+PETSC_UNUSED static inline void AcousticsFlux(662,26266
+static PetscErrorCode PhysicsCharacteristic_Acoustics(668,26440
+static PetscErrorCode PhysicsSample_Acoustics_Initial(687,26982
+static PetscErrorCode PhysicsSample_Acoustics(705,27668
+static PetscErrorCode PhysicsRiemann_Acoustics_Exact(735,28815
+static PetscErrorCode PhysicsCreate_Acoustics(753,29541
+ PetscReal acoustic_speed;793,31365
+} IsoGasCtx;794,31393
+static inline void IsoGasFlux(796,31407
+static PetscErrorCode PhysicsSample_IsoGas(802,31555
+static PetscErrorCode PhysicsRiemann_IsoGas_Roe(821,32172
+static PetscErrorCode PhysicsRiemann_IsoGas_Exact(867,34010
+ PetscScalar rho,873,34290
+ PetscScalar rho, u;873,34290
+static PetscErrorCode PhysicsRiemann_IsoGas_Rusanov(930,37135
+ PetscScalar rho,935,37410
+ PetscScalar rho, u;935,37410
+static PetscErrorCode PhysicsCharacteristic_IsoGas(949,37925
+static PetscErrorCode PhysicsCreate_IsoGas(966,38486
+ PetscReal gravity;1003,40342
+} ShallowCtx;1004,40363
+static inline void ShallowFlux(1006,40378
+static PetscErrorCode PhysicsRiemann_Shallow_Exact(1012,40556
+ PetscScalar h,1017,40835
+ PetscScalar h, u;1017,40835
+static PetscErrorCode PhysicsRiemann_Shallow_Rusanov(1086,44218
+ PetscScalar h,1091,44488
+ PetscScalar h, u;1091,44488
+static PetscErrorCode PhysicsCharacteristic_Shallow(1105,45057
+static PetscErrorCode PhysicsCreate_Shallow(1123,45652
+static PetscErrorCode FVRHSFunction(1160,47502
+static PetscErrorCode SmallMatMultADB(1259,51284
+static PetscErrorCode FVIJacobian(1274,51693
+static PetscErrorCode FVSample(1309,53097
+static PetscErrorCode SolutionStatsView(1336,54278
+static PetscErrorCode SolutionErrorNorms(1371,56011
+int main(1388,56482
+
+src/ts/tutorials/ex36.c,293
+ex36.c:^?ex36.c^A,1
+static char help[help2,1
+FILE *gfilepointer_data,gfilepointer_data35,1113
+FILE *gfilepointer_data, *gfilepointer_info;gfilepointer_info35,1113
+PetscErrorCode Ue(38,1185
+static PetscErrorCode IFunctionImplicit(48,1391
+static PetscErrorCode IJacobianImplicit(74,2618
+int main(114,4139
+
+src/ts/tutorials/ex26.c,497
+ex26.c:^?ex26.c^A,1
+static char help[help2,1
+ PetscScalar u,99,4570
+ PetscScalar u, v,99,4570
+ PetscScalar u, v, omega,99,4570
+ PetscScalar u, v, omega, temp;99,4570
+} Field;100,4603
+ PetscReal lidvelocity,105,4732
+ PetscReal lidvelocity, prandtl,105,4732
+ PetscReal lidvelocity, prandtl, grashof;105,4732
+ PetscBool parabolic;106,4801
+ PetscReal cfl_initial;107,4925
+} AppCtx;108,4998
+int main(112,5065
+PetscErrorCode FormInitialSolution(209,9423
+PetscErrorCode FormIFunctionLocal(257,10763
+
+src/ts/tutorials/ex20td.c,750
+ex20td.c:^?ex20td.c^A,1
+static char help[help1,0
+ PetscInt max_steps;71,3253
+ PetscReal final_time;72,3313
+ PetscReal time_step;73,3369
+ Vec mu1;74,3424
+ Vec mu2;75,3476
+ Vec U;76,3528
+ Mat A;77,3574
+ Mat Jacp;80,3686
+ Vec lambda;81,3723
+ Vec mup;82,3760
+ Vec sens_mu1;85,3883
+ Vec sens_mu2;86,3942
+ PetscInt adj_idx;87,4001
+} AppCtx;88,4065
+ SA_TRACK,91,4091
+ SA_GLOBAL92,4103
+} SAMethod;93,4115
+static const char *const SAMethods[SAMethods94,4127
+PetscErrorCode RHSFunction(98,4288
+PetscErrorCode RHSJacobian(122,5077
+PetscErrorCode RHSJacobianP_track(152,6180
+PetscErrorCode RHSJacobianP_global(173,6860
+PetscErrorCode Monitor(197,7631
+PetscErrorCode AdjointMonitor(208,8084
+int main(240,9444
+
+src/ts/tutorials/ex20fwd.c,585
+ex20fwd.c:^?ex20fwd.c^A,1
+#define c11 1,0
+#define c12 2,16
+#define c21 3,30
+#define c22 4,46
+static char help[help5,62
+typedef struct _n_User *User;User18,933
+struct _n_User 19,963
+ PetscReal mu;20,980
+ PetscReal next_output;21,996
+ PetscBool combined;22,1021
+ PetscInt steps;24,1080
+ PetscReal ftime;25,1099
+ Mat Jac;26,1118
+ Mat Jacp;27,1158
+ Vec x;28,1199
+ Mat sp;29,1214
+static PetscErrorCode IFunction(35,1301
+static PetscErrorCode IJacobian(53,1895
+static PetscErrorCode RHSJacobianP(78,2737
+static PetscErrorCode Monitor(99,3454
+int main(122,4398
+
src/ts/tutorials/ex14.c,5086
ex14.c:^?ex14.c^A,1
static const char help[help1,0
@@ -5677,34 +5898,332 @@
static PetscErrorCode THICreateDM3d(1490,73407
int main(1515,74483
-src/ts/tutorials/ex20td.c,750
-ex20td.c:^?ex20td.c^A,1
+src/ts/tutorials/ex11_sa.c,6200
+ex11_sa.c:^?ex11_sa.c^A,1
static char help[help1,0
- PetscInt max_steps;71,3253
- PetscReal final_time;72,3313
- PetscReal time_step;73,3369
- Vec mu1;74,3424
- Vec mu2;75,3476
- Vec U;76,3528
- Mat A;77,3574
- Mat Jacp;80,3686
- Vec lambda;81,3723
- Vec mup;82,3760
- Vec sens_mu1;85,3883
- Vec sens_mu2;86,3942
- PetscInt adj_idx;87,4001
-} AppCtx;88,4065
- SA_TRACK,91,4091
- SA_GLOBAL92,4103
-} SAMethod;93,4115
-static const char *const SAMethods[SAMethods94,4127
-PetscErrorCode RHSFunction(98,4288
-PetscErrorCode RHSJacobian(122,5077
-PetscErrorCode RHSJacobianP_track(152,6180
-PetscErrorCode RHSJacobianP_global(173,6860
-PetscErrorCode Monitor(197,7631
-PetscErrorCode AdjointMonitor(208,8084
-int main(240,9444
+#define DIM 43,1890
+static PetscFunctionList PhysicsList;45,1931
+typedef struct _n_Physics *Physics;Physics48,2017
+typedef struct _n_Model *Model;Model52,2244
+typedef struct _n_User *User;User55,2341
+typedef PetscErrorCode (*RiemannFunction)RiemannFunction57,2372
+typedef PetscErrorCode (*SolutionFunction)SolutionFunction58,2518
+typedef PetscErrorCode (*FunctionalFunction)FunctionalFunction59,2622
+typedef PetscErrorCode (*SetupFields)SetupFields60,2747
+struct FieldDescription 65,3064
+ const char *name;name66,3090
+ PetscInt dof;67,3110
+typedef struct _n_FunctionalLink *FunctionalLink;FunctionalLink70,3133
+struct _n_FunctionalLink 71,3183
+ char *name;name72,3210
+ FunctionalFunction func;73,3237
+ void *ctx;ctx74,3264
+ PetscInt offset;75,3290
+ FunctionalLink next;76,3319
+struct _n_Physics 79,3350
+ RiemannFunction riemann;80,3370
+ PetscInt dof;81,3412
+ PetscReal maxspeed;82,3499
+ void *data;data83,3622
+ PetscInt nfields;84,3661
+ const struct FieldDescription *field_desc;field_desc85,3703
+struct _n_Model 88,3752
+ MPI_Comm comm;89,3770
+ Physics physics;90,3883
+ FunctionalLink functionalRegistry;91,3911
+ PetscInt maxComputed;92,3950
+ PetscInt numMonitored;93,3982
+ FunctionalLink *functionalMonitored;functionalMonitored94,4015
+ PetscInt numCall;95,4055
+ FunctionalLink *functionalCall;functionalCall96,4083
+ SolutionFunction solution;97,4118
+ void *solutionctx;solutionctx98,4147
+ PetscReal maxspeed;99,4179
+struct _n_User 102,4273
+ PetscInt numSplitFaces;103,4290
+ PetscInt vtkInterval;104,4316
+ Model model;105,4358
+static inline PetscScalar DotDIM(108,4380
+static inline PetscReal NormDIM(116,4569
+static inline void axDIM(120,4681
+static inline void waxDIM(125,4800
+static inline void NormalSplitDIM(130,4948
+static inline PetscScalar Dot2(141,5266
+static inline PetscReal Norm2(145,5381
+static inline void Normalize2(149,5489
+static inline void Waxpy2(155,5596
+static inline void Scale2(160,5753
+static inline void WaxpyD(166,5875
+static inline PetscScalar DotD(171,6060
+static inline PetscReal NormD(178,6257
+static inline void NormalSplit(183,6385
+ ADVECT_SOL_TILTED,191,6681
+ ADVECT_SOL_BUMP192,6702
+} AdvectSolType;193,6720
+static const char *const AdvectSolTypes[AdvectSolTypes194,6737
+ ADVECT_SOL_BUMP_CONE,196,6851
+ ADVECT_SOL_BUMP_COS197,6875
+} AdvectSolBumpType;198,6897
+static const char *const AdvectSolBumpTypes[AdvectSolBumpTypes199,6918
+ PetscReal wind[wind202,7045
+} Physics_Advect_Tilted;203,7068
+ PetscReal center[center205,7110
+ PetscReal radius;206,7143
+ AdvectSolBumpType type;207,7171
+} Physics_Advect_Bump;208,7197
+ PetscReal inflowState;211,7238
+ AdvectSolType soltype;212,7267
+ Physics_Advect_Tilted tilted;215,7304
+ Physics_Advect_Bump bump;216,7338
+ } sol;217,7370
+ PetscInt Error;219,7390
+ } functional;220,7410
+} Physics_Advect;221,7426
+static const struct FieldDescription PhysicsFields_Advect[PhysicsFields_Advect223,7445
+static PetscErrorCode PhysicsBoundary_Advect_Inflow(228,7538
+static PetscErrorCode PhysicsBoundary_Advect_Outflow(238,7884
+static PetscErrorCode PhysicsRiemann_Advect(245,8118
+static PetscErrorCode PhysicsSolution_Advect(269,8941
+static PetscErrorCode PhysicsFunctional_Advect(307,10179
+static PetscErrorCode PhysicsCreate_Advect(319,10638
+ PetscReal gravity;377,13624
+ PetscReal boundaryHeight;378,13645
+ PetscInt Height;380,13684
+ PetscInt Speed;381,13705
+ PetscInt Energy;382,13725
+ } functional;383,13746
+} Physics_SW;384,13762
+ PetscScalar vals[vals386,13793
+ PetscScalar h;387,13816
+ PetscScalar uh[uh388,13833
+} SWNode;389,13856
+static const struct FieldDescription PhysicsFields_SW[PhysicsFields_SW391,13867
+static PetscErrorCode SWFlux(402,14074
+static PetscErrorCode PhysicsBoundary_SW_Wall(416,14471
+static PetscErrorCode PhysicsRiemann_SW(425,14734
+static PetscErrorCode PhysicsSolution_SW(447,15760
+static PetscErrorCode PhysicsFunctional_SW(463,16244
+static PetscErrorCode PhysicsCreate_SW(480,16857
+ PetscScalar vals[vals513,18272
+ PetscScalar r;514,18295
+ PetscScalar ru[ru515,18312
+ PetscScalar e;516,18335
+} EulerNode;517,18352
+typedef PetscErrorCode (*EquationOfState)EquationOfState518,18365
+ PetscInt npars;520,18478
+ PetscReal pars[pars521,18503
+ EquationOfState pressure;522,18532
+ EquationOfState sound;523,18560
+ PetscInt Density;525,18596
+ PetscInt Momentum;526,18618
+ PetscInt Energy;527,18641
+ PetscInt Pressure;528,18662
+ PetscInt Speed;529,18685
+ } monitor;530,18705
+} Physics_Euler;531,18718
+static const struct FieldDescription PhysicsFields_Euler[PhysicsFields_Euler533,18736
+static PetscErrorCode Pressure_PG(540,18886
+static PetscErrorCode SpeedOfSound_PG(552,19180
+static PetscErrorCode EulerFlux(572,19678
+static PetscErrorCode PhysicsBoundary_Euler_Wall(591,20228
+static PetscErrorCode PhysicsRiemann_Euler_Rusanov(605,20672
+static PetscErrorCode PhysicsSolution_Euler(624,21601
+static PetscErrorCode PhysicsFunctional_Euler(636,21996
+static PetscErrorCode PhysicsCreate_Euler(653,22592
+PetscErrorCode ConstructCellBoundary(689,24324
+PetscErrorCode SplitFaces(761,27770
+PetscErrorCode CreatePartitionVec(959,35982
+PetscErrorCode CreateMassMatrix(998,37523
+PetscErrorCode SetUpLocalSpace(1074,41026
+PetscErrorCode SetUpBoundaries(1116,42838
+static PetscErrorCode ModelSolutionSetDefault(1144,43788
+static PetscErrorCode ModelFunctionalRegister(1152,43989
+static PetscErrorCode ModelFunctionalSetFromOptions(1170,44568
+static PetscErrorCode FunctionalLinkDestroy(1211,46447
+PetscErrorCode SetInitialCondition(1227,46779
+static PetscErrorCode OutputVTK(1257,47809
+static PetscErrorCode MonitorVTK(1266,48136
+static PetscErrorCode OutputBIN(1373,52738
+static PetscErrorCode TestMonitor(1383,53131
+static PetscErrorCode MonitorBIN(1416,54248
+int main(1435,54915
+
+src/ts/tutorials/ex11.c,7072
+ex11.c:^?ex11.c^A,1
+static char help[help1,0
+#define DIM 42,1867
+static PetscFunctionList PhysicsList,44,1908
+static PetscFunctionList PhysicsList, PhysicsRiemannList_SW;44,1908
+typedef struct _n_Physics *Physics;Physics47,2017
+typedef struct _n_Model *Model;Model51,2244
+typedef struct _n_User *User;User54,2341
+typedef PetscErrorCode (*SolutionFunction)SolutionFunction55,2371
+typedef PetscErrorCode (*SetUpBCFunction)SetUpBCFunction56,2475
+typedef PetscErrorCode (*FunctionalFunction)FunctionalFunction57,2540
+typedef PetscErrorCode (*SetupFields)SetupFields58,2665
+struct FieldDescription 63,2982
+ const char *name;name64,3008
+ PetscInt dof;65,3028
+typedef struct _n_FunctionalLink *FunctionalLink;FunctionalLink68,3051
+struct _n_FunctionalLink 69,3101
+ char *name;name70,3128
+ FunctionalFunction func;71,3155
+ void *ctx;ctx72,3182
+ PetscInt offset;73,3208
+ FunctionalLink next;74,3237
+struct _n_Physics 77,3268
+ PetscRiemannFunc riemann;78,3288
+ PetscInt dof;79,3330
+ PetscReal maxspeed;80,3417
+ void *data;data81,3540
+ PetscInt nfields;82,3579
+ const struct FieldDescription *field_desc;field_desc83,3621
+struct _n_Model 86,3670
+ MPI_Comm comm;87,3688
+ Physics physics;88,3801
+ FunctionalLink functionalRegistry;89,3829
+ PetscInt maxComputed;90,3868
+ PetscInt numMonitored;91,3900
+ FunctionalLink *functionalMonitored;functionalMonitored92,3933
+ PetscInt numCall;93,3973
+ FunctionalLink *functionalCall;functionalCall94,4001
+ SolutionFunction solution;95,4036
+ SetUpBCFunction setupbc;96,4065
+ void *solutionctx;solutionctx97,4093
+ PetscReal maxspeed;98,4125
+ PetscReal bounds[bounds99,4215
+ PetscErrorCode (*errorIndicator)errorIndicator100,4251
+ void *errorCtx;errorCtx101,4381
+struct _n_User 104,4403
+ PetscInt vtkInterval;105,4420
+ char outputBasename[outputBasename106,4486
+ PetscInt monitorStepOffset;107,4566
+ Model model;108,4597
+ PetscBool vtkmon;109,4616
+static inline PetscReal DotDIMReal(112,4640
+static inline PetscReal NormDIM(120,4823
+static inline PetscReal Dot2Real(125,4936
+static inline PetscReal Norm2Real(129,5049
+static inline void Normalize2Real(133,5161
+static inline void Waxpy2Real(139,5274
+static inline void Scale2Real(144,5427
+ ADVECT_SOL_TILTED,152,5612
+ ADVECT_SOL_BUMP,153,5633
+ ADVECT_SOL_BUMP_CAVITY154,5652
+} AdvectSolType;155,5677
+static const char *const AdvectSolTypes[AdvectSolTypes156,5694
+ ADVECT_SOL_BUMP_CONE,158,5823
+ ADVECT_SOL_BUMP_COS159,5847
+} AdvectSolBumpType;160,5869
+static const char *const AdvectSolBumpTypes[AdvectSolBumpTypes161,5890
+ PetscReal wind[wind164,6017
+} Physics_Advect_Tilted;165,6040
+ PetscReal center[center167,6082
+ PetscReal radius;168,6115
+ AdvectSolBumpType type;169,6143
+} Physics_Advect_Bump;170,6169
+ PetscReal inflowState;173,6210
+ AdvectSolType soltype;174,6239
+ Physics_Advect_Tilted tilted;177,6276
+ Physics_Advect_Bump bump;178,6310
+ } sol;179,6342
+ PetscInt Solution;181,6362
+ PetscInt Error;182,6385
+ } functional;183,6405
+} Physics_Advect;184,6421
+static const struct FieldDescription PhysicsFields_Advect[PhysicsFields_Advect186,6440
+static PetscErrorCode PhysicsBoundary_Advect_Inflow(191,6533
+static PetscErrorCode PhysicsBoundary_Advect_Outflow(201,6879
+static void PhysicsRiemann_Advect(208,7113
+static PetscErrorCode PhysicsSolution_Advect(258,8558
+static PetscErrorCode PhysicsFunctional_Advect(297,9839
+static PetscErrorCode SetUpBC_Advect(310,10369
+static PetscErrorCode PhysicsCreate_Advect(323,11136
+ PetscReal gravity;376,13667
+ PetscReal boundaryHeight;377,13688
+ PetscInt Height;379,13727
+ PetscInt Speed;380,13748
+ PetscInt Energy;381,13768
+ } functional;382,13789
+} Physics_SW;383,13805
+ PetscReal h;385,13836
+ PetscReal uh[uh386,13851
+} SWNode;387,13872
+ SWNode swnode;390,13898
+ PetscReal vals[vals391,13918
+} SWNodeUnion;392,13945
+static const struct FieldDescription PhysicsFields_SW[PhysicsFields_SW394,13961
+static PetscErrorCode SWFlux(405,14168
+static PetscErrorCode PhysicsBoundary_SW_Wall(419,14588
+static void PhysicsRiemann_SW_HLL(428,14851
+static void PhysicsRiemann_SW_Rusanov(478,16705
+static PetscErrorCode PhysicsSolution_SW(515,18191
+static PetscErrorCode PhysicsFunctional_SW(531,18677
+static PetscErrorCode SetUpBC_SW(548,19287
+static PetscErrorCode PhysicsCreate_SW(559,19731
+ EULER_PAR_GAMMA,598,21705
+ EULER_PAR_RHOR,599,21724
+ EULER_PAR_AMACH,600,21742
+ EULER_PAR_ITANA,601,21761
+ EULER_PAR_SIZE602,21780
+} EulerParamIdx;603,21797
+ EULER_IV_SHOCK,605,21829
+ EULER_SS_SHOCK,606,21847
+ EULER_SHOCK_TUBE,607,21865
+ EULER_LINEAR_WAVE608,21885
+} EulerType;609,21905
+ PetscReal r;611,21935
+ PetscReal ru[ru612,21950
+ PetscReal E;613,21971
+} EulerNode;614,21986
+ EulerNode eulernode;617,22015
+ PetscReal vals[vals618,22038
+} EulerNodeUnion;619,22065
+typedef PetscErrorCode (*EquationOfState)EquationOfState620,22083
+ EulerType type;622,22194
+ PetscReal pars[pars623,22218
+ EquationOfState sound;624,22258
+ PetscInt Density;626,22294
+ PetscInt Momentum;627,22316
+ PetscInt Energy;628,22339
+ PetscInt Pressure;629,22360
+ PetscInt Speed;630,22383
+ } monitor;631,22403
+} Physics_Euler;632,22416
+static const struct FieldDescription PhysicsFields_Euler[PhysicsFields_Euler634,22434
+static PetscErrorCode PhysicsSolution_Euler(643,22729
+static PetscErrorCode Pressure_PG(704,25364
+static PetscErrorCode SpeedOfSound_PG(714,25666
+static PetscErrorCode EulerFlux(733,26208
+static PetscErrorCode PhysicsBoundary_Euler_Wall(750,26896
+static void PhysicsRiemann_Euler_Godunov(775,28216
+static PetscErrorCode PhysicsFunctional_Euler(811,29658
+static PetscErrorCode SetUpBC_Euler(828,30270
+static PetscErrorCode PhysicsCreate_Euler(845,31070
+static PetscErrorCode ErrorIndicator_Simple(910,34540
+PetscErrorCode CreatePartitionVec(923,34956
+PetscErrorCode CreateMassMatrix(962,36497
+static PetscErrorCode ModelSolutionSetDefault(1039,40077
+static PetscErrorCode ModelFunctionalRegister(1047,40278
+static PetscErrorCode ModelFunctionalSetFromOptions(1065,40857
+static PetscErrorCode FunctionalLinkDestroy(1106,42740
+static PetscErrorCode SolutionFunctional(1123,43131
+PetscErrorCode SetInitialCondition(1132,43425
+static PetscErrorCode OutputVTK(1145,43837
+static PetscErrorCode MonitorVTK(1154,44164
+static PetscErrorCode initializeTS(1271,49195
+static PetscErrorCode adaptToleranceFVM(1285,49768
+int main(1388,54835
+PetscScalar cvmgp_(1777,71076
+PetscScalar cvmgm_(1790,71336
+int riem1mdt(1803,71596
+PetscScalar sign(1973,78248
+int riemannsolver(1981,78482
+int godunovflux(2073,81736
+int projecteqstate(2184,84981
+int projecttoprim(2195,85306
+int eigenvectors(2206,85622
+int initLinearWave(2237,86307
src/ts/tutorials/makefile,55
makefile:^?makefile^A,1
@@ -5775,146 +6294,6 @@
PetscErrorCode MonitorTempature(374,15851
PETSC_UNUSED PetscErrorCode PrintSpecies(389,16333
-src/ts/tutorials/ex9.c,5792
-ex9.c:^?ex9.c^A,1
-static const char help[help1,0
-static inline PetscReal Sgn(40,3203
-static inline PetscReal Abs(44,3275
-static inline PetscReal Sqr(48,3346
-static inline PetscReal MaxAbs(52,3407
-PETSC_UNUSED static inline PetscReal MinAbs(56,3514
-static inline PetscReal MinMod2(60,3634
-static inline PetscReal MaxMod2(64,3768
-static inline PetscReal MinMod3(68,3902
-static inline PetscReal RangeMod(73,4086
-typedef struct _LimitInfo 80,4384
- PetscReal hx;81,4412
- PetscInt m;82,4428
-} *LimitInfo;LimitInfo83,4443
-static void Limit_Upwind(84,4466
-static void Limit_LaxWendroff(89,4633
-static void Limit_BeamWarming(94,4809
-static void Limit_Fromm(99,4985
-static void Limit_Minmod(104,5171
-static void Limit_Superbee(109,5358
-static void Limit_MC(114,5587
-static void Limit_VanLeer(119,5801
-static void Limit_VanAlbada(124,6085
-static void Limit_VanAlbadaTVD(129,6492
-static void Limit_Koren(134,6801
-static void Limit_KorenSym(139,7238
-static void Limit_Koren3(144,7674
-static PetscReal CadaTorrilhonPhiHatR_Eq13(149,7929
-static void Limit_CadaTorrilhon2(153,8124
-static void Limit_CadaTorrilhon3R(158,8370
-static void Limit_CadaTorrilhon3R0p1(168,9041
-static void Limit_CadaTorrilhon3R1(172,9211
-static void Limit_CadaTorrilhon3R10(176,9377
-static void Limit_CadaTorrilhon3R100(180,9545
- FVBC_PERIODIC,188,9838
- FVBC_OUTFLOW189,9855
-} FVBCType;190,9870
-static const char *FVBCTypes[FVBCTypes191,9882
-typedef PetscErrorCode (*RiemannFunction)RiemannFunction192,9964
-typedef PetscErrorCode (*ReconstructFunction)ReconstructFunction193,10095
- PetscErrorCode (*sample)sample196,10242
- RiemannFunction riemann;197,10355
- ReconstructFunction characteristic;198,10386
- PetscErrorCode (*destroy)destroy199,10424
- void *user;user200,10461
- PetscInt dof;201,10478
- char *fieldname[fieldname202,10494
-} PhysicsCtx;203,10520
- void (*limit)limit206,10552
- PhysicsCtx physics;207,10637
- MPI_Comm comm;208,10659
- char prefix[prefix209,10678
- PetscScalar *R,R212,10731
- PetscScalar *R, *Rinv;Rinv212,10731
- PetscScalar *cjmpLR;cjmpLR213,10816
- PetscScalar *cslope;cslope214,10920
- PetscScalar *uLR;uLR215,10998
- PetscScalar *flux;flux216,11104
- PetscReal *speeds;speeds217,11157
- PetscReal cfl_idt;219,11209
- PetscReal cfl;220,11269
- PetscReal xmin,221,11286
- PetscReal xmin, xmax;221,11286
- PetscInt initial;222,11310
- PetscBool exact;223,11331
- FVBCType bctype;224,11350
-} FVCtx;225,11370
-PetscErrorCode RiemannListAdd(227,11380
-PetscErrorCode RiemannListFind(234,11591
-PetscErrorCode ReconstructListAdd(242,11922
-PetscErrorCode ReconstructListFind(249,12131
-static PetscErrorCode PhysicsCharacteristic_Conservative(265,12929
-static PetscErrorCode PhysicsDestroy_SimpleFree(277,13329
- PetscReal a;287,13580
-} AdvectCtx;288,13620
-static PetscErrorCode PhysicsRiemann_Advect(290,13634
-static PetscErrorCode PhysicsCharacteristic_Advect(302,14018
-static PetscErrorCode PhysicsSample_Advect(313,14321
-static PetscErrorCode PhysicsCreate_Advect(360,15517
- PetscReal lxf_speed;385,16357
-} BurgersCtx;386,16380
-static PetscErrorCode PhysicsSample_Burgers(388,16395
-static PetscErrorCode PhysicsRiemann_Burgers_Exact(426,17556
-static PetscErrorCode PhysicsRiemann_Burgers_Roe(439,18136
-static PetscErrorCode PhysicsRiemann_Burgers_LxF(451,18611
-static PetscErrorCode PhysicsRiemann_Burgers_Rusanov(465,19064
-static PetscErrorCode PhysicsCreate_Burgers(479,19532
- PetscReal lxf_speed;520,21069
- PetscReal a;521,21092
-} TrafficCtx;522,21107
-static inline PetscScalar TrafficFlux(524,21122
-static PetscErrorCode PhysicsSample_Traffic(529,21221
-static PetscErrorCode PhysicsRiemann_Traffic_Exact(554,22110
-static PetscErrorCode PhysicsRiemann_Traffic_Roe(568,22657
-static PetscErrorCode PhysicsRiemann_Traffic_LxF(580,23107
-static PetscErrorCode PhysicsRiemann_Traffic_Rusanov(593,23589
-static PetscErrorCode PhysicsCreate_Traffic(605,24070
- PetscReal c;658,26142
- PetscReal z;659,26198
-} AcousticsCtx;660,26249
-PETSC_UNUSED static inline void AcousticsFlux(662,26266
-static PetscErrorCode PhysicsCharacteristic_Acoustics(668,26440
-static PetscErrorCode PhysicsSample_Acoustics_Initial(687,26982
-static PetscErrorCode PhysicsSample_Acoustics(705,27668
-static PetscErrorCode PhysicsRiemann_Acoustics_Exact(735,28815
-static PetscErrorCode PhysicsCreate_Acoustics(753,29541
- PetscReal acoustic_speed;793,31365
-} IsoGasCtx;794,31393
-static inline void IsoGasFlux(796,31407
-static PetscErrorCode PhysicsSample_IsoGas(802,31555
-static PetscErrorCode PhysicsRiemann_IsoGas_Roe(821,32172
-static PetscErrorCode PhysicsRiemann_IsoGas_Exact(867,34010
- PetscScalar rho,873,34290
- PetscScalar rho, u;873,34290
-static PetscErrorCode PhysicsRiemann_IsoGas_Rusanov(930,37135
- PetscScalar rho,935,37410
- PetscScalar rho, u;935,37410
-static PetscErrorCode PhysicsCharacteristic_IsoGas(949,37925
-static PetscErrorCode PhysicsCreate_IsoGas(966,38486
- PetscReal gravity;1003,40342
-} ShallowCtx;1004,40363
-static inline void ShallowFlux(1006,40378
-static PetscErrorCode PhysicsRiemann_Shallow_Exact(1012,40556
- PetscScalar h,1017,40835
- PetscScalar h, u;1017,40835
-static PetscErrorCode PhysicsRiemann_Shallow_Rusanov(1086,44218
- PetscScalar h,1091,44488
- PetscScalar h, u;1091,44488
-static PetscErrorCode PhysicsCharacteristic_Shallow(1105,45057
-static PetscErrorCode PhysicsCreate_Shallow(1123,45652
-static PetscErrorCode FVRHSFunction(1160,47502
-static PetscErrorCode SmallMatMultADB(1259,51284
-static PetscErrorCode FVIJacobian(1274,51693
-static PetscErrorCode FVSample(1309,53097
-static PetscErrorCode SolutionStatsView(1336,54278
-static PetscErrorCode SolutionErrorNorms(1371,56011
-int main(1388,56482
-
src/ts/tutorials/ex8.c,1170
ex8.c:^?ex8.c^A,1
static char help[help2,1
@@ -6695,16 +7074,6 @@
static PetscErrorCode IJacobianImplicit(62,2103
int main(104,3714
-src/ts/tutorials/ex36.c,293
-ex36.c:^?ex36.c^A,1
-static char help[help2,1
-FILE *gfilepointer_data,gfilepointer_data35,1113
-FILE *gfilepointer_data, *gfilepointer_info;gfilepointer_info35,1113
-PetscErrorCode Ue(38,1185
-static PetscErrorCode IFunctionImplicit(48,1391
-static PetscErrorCode IJacobianImplicit(74,2618
-int main(114,4139
-
src/ts/tutorials/ex35.cxx,707
ex35.cxx:^?ex35.cxx^A,1
static const char help[help1,0
@@ -6876,24 +7245,6 @@
PetscErrorCode ReactingFlowPostCheck(285,10093
PetscErrorCode FormIFunction(315,11163
-src/ts/tutorials/ex26.c,497
-ex26.c:^?ex26.c^A,1
-static char help[help2,1
- PetscScalar u,99,4570
- PetscScalar u, v,99,4570
- PetscScalar u, v, omega,99,4570
- PetscScalar u, v, omega, temp;99,4570
-} Field;100,4603
- PetscReal lidvelocity,105,4732
- PetscReal lidvelocity, prandtl,105,4732
- PetscReal lidvelocity, prandtl, grashof;105,4732
- PetscBool parabolic;106,4801
- PetscReal cfl_initial;107,4925
-} AppCtx;108,4998
-int main(112,5065
-PetscErrorCode FormInitialSolution(209,9423
-PetscErrorCode FormIFunctionLocal(257,10763
-
src/ts/tutorials/ex25.c,550
ex25.c:^?ex25.c^A,1
static const char help[help1,0
@@ -7087,30 +7438,6 @@
static PetscErrorCode HessianProductMat(380,12999
int main(394,13393
-src/ts/tutorials/ex20fwd.c,585
-ex20fwd.c:^?ex20fwd.c^A,1
-#define c11 1,0
-#define c12 2,16
-#define c21 3,30
-#define c22 4,46
-static char help[help5,62
-typedef struct _n_User *User;User18,931
-struct _n_User 19,961
- PetscReal mu;20,978
- PetscReal next_output;21,994
- PetscBool combined;22,1019
- PetscInt steps;24,1078
- PetscReal ftime;25,1097
- Mat Jac;26,1116
- Mat Jacp;27,1156
- Vec x;28,1197
- Mat sp;29,1212
-static PetscErrorCode IFunction(35,1299
-static PetscErrorCode IJacobian(53,1893
-static PetscErrorCode RHSJacobianP(78,2735
-static PetscErrorCode Monitor(99,3452
-int main(122,4396
-
src/ts/tutorials/ex20adj.c,631
ex20adj.c:^?ex20adj.c^A,1
static char help[help1,0
@@ -7346,333 +7673,6 @@
PetscErrorCode MyTSMonitor(247,8714
PetscErrorCode MySNESMonitor(270,9521
-src/ts/tutorials/ex11_sa.c,6200
-ex11_sa.c:^?ex11_sa.c^A,1
-static char help[help1,0
-#define DIM 43,1890
-static PetscFunctionList PhysicsList;45,1931
-typedef struct _n_Physics *Physics;Physics48,2017
-typedef struct _n_Model *Model;Model52,2244
-typedef struct _n_User *User;User55,2341
-typedef PetscErrorCode (*RiemannFunction)RiemannFunction57,2372
-typedef PetscErrorCode (*SolutionFunction)SolutionFunction58,2518
-typedef PetscErrorCode (*FunctionalFunction)FunctionalFunction59,2622
-typedef PetscErrorCode (*SetupFields)SetupFields60,2747
-struct FieldDescription 65,3064
- const char *name;name66,3090
- PetscInt dof;67,3110
-typedef struct _n_FunctionalLink *FunctionalLink;FunctionalLink70,3133
-struct _n_FunctionalLink 71,3183
- char *name;name72,3210
- FunctionalFunction func;73,3237
- void *ctx;ctx74,3264
- PetscInt offset;75,3290
- FunctionalLink next;76,3319
-struct _n_Physics 79,3350
- RiemannFunction riemann;80,3370
- PetscInt dof;81,3412
- PetscReal maxspeed;82,3499
- void *data;data83,3622
- PetscInt nfields;84,3661
- const struct FieldDescription *field_desc;field_desc85,3703
-struct _n_Model 88,3752
- MPI_Comm comm;89,3770
- Physics physics;90,3882
- FunctionalLink functionalRegistry;91,3910
- PetscInt maxComputed;92,3949
- PetscInt numMonitored;93,3981
- FunctionalLink *functionalMonitored;functionalMonitored94,4014
- PetscInt numCall;95,4054
- FunctionalLink *functionalCall;functionalCall96,4082
- SolutionFunction solution;97,4117
- void *solutionctx;solutionctx98,4146
- PetscReal maxspeed;99,4178
-struct _n_User 102,4272
- PetscInt numSplitFaces;103,4289
- PetscInt vtkInterval;104,4315
- Model model;105,4357
-static inline PetscScalar DotDIM(108,4379
-static inline PetscReal NormDIM(116,4568
-static inline void axDIM(120,4680
-static inline void waxDIM(125,4799
-static inline void NormalSplitDIM(130,4947
-static inline PetscScalar Dot2(141,5265
-static inline PetscReal Norm2(145,5380
-static inline void Normalize2(149,5488
-static inline void Waxpy2(155,5595
-static inline void Scale2(160,5752
-static inline void WaxpyD(166,5874
-static inline PetscScalar DotD(171,6059
-static inline PetscReal NormD(178,6256
-static inline void NormalSplit(183,6384
- ADVECT_SOL_TILTED,191,6680
- ADVECT_SOL_BUMP192,6701
-} AdvectSolType;193,6719
-static const char *const AdvectSolTypes[AdvectSolTypes194,6736
- ADVECT_SOL_BUMP_CONE,196,6850
- ADVECT_SOL_BUMP_COS197,6874
-} AdvectSolBumpType;198,6896
-static const char *const AdvectSolBumpTypes[AdvectSolBumpTypes199,6917
- PetscReal wind[wind202,7044
-} Physics_Advect_Tilted;203,7067
- PetscReal center[center205,7109
- PetscReal radius;206,7142
- AdvectSolBumpType type;207,7170
-} Physics_Advect_Bump;208,7196
- PetscReal inflowState;211,7237
- AdvectSolType soltype;212,7266
- Physics_Advect_Tilted tilted;215,7303
- Physics_Advect_Bump bump;216,7337
- } sol;217,7369
- PetscInt Error;219,7389
- } functional;220,7409
-} Physics_Advect;221,7425
-static const struct FieldDescription PhysicsFields_Advect[PhysicsFields_Advect223,7444
-static PetscErrorCode PhysicsBoundary_Advect_Inflow(228,7537
-static PetscErrorCode PhysicsBoundary_Advect_Outflow(238,7883
-static PetscErrorCode PhysicsRiemann_Advect(245,8117
-static PetscErrorCode PhysicsSolution_Advect(269,8940
-static PetscErrorCode PhysicsFunctional_Advect(307,10178
-static PetscErrorCode PhysicsCreate_Advect(319,10637
- PetscReal gravity;377,13623
- PetscReal boundaryHeight;378,13644
- PetscInt Height;380,13683
- PetscInt Speed;381,13704
- PetscInt Energy;382,13724
- } functional;383,13745
-} Physics_SW;384,13761
- PetscScalar vals[vals386,13792
- PetscScalar h;387,13815
- PetscScalar uh[uh388,13832
-} SWNode;389,13855
-static const struct FieldDescription PhysicsFields_SW[PhysicsFields_SW391,13866
-static PetscErrorCode SWFlux(402,14073
-static PetscErrorCode PhysicsBoundary_SW_Wall(416,14470
-static PetscErrorCode PhysicsRiemann_SW(425,14733
-static PetscErrorCode PhysicsSolution_SW(447,15759
-static PetscErrorCode PhysicsFunctional_SW(463,16243
-static PetscErrorCode PhysicsCreate_SW(480,16856
- PetscScalar vals[vals513,18271
- PetscScalar r;514,18294
- PetscScalar ru[ru515,18311
- PetscScalar e;516,18334
-} EulerNode;517,18351
-typedef PetscErrorCode (*EquationOfState)EquationOfState518,18364
- PetscInt npars;520,18477
- PetscReal pars[pars521,18502
- EquationOfState pressure;522,18531
- EquationOfState sound;523,18559
- PetscInt Density;525,18595
- PetscInt Momentum;526,18617
- PetscInt Energy;527,18640
- PetscInt Pressure;528,18661
- PetscInt Speed;529,18684
- } monitor;530,18704
-} Physics_Euler;531,18717
-static const struct FieldDescription PhysicsFields_Euler[PhysicsFields_Euler533,18735
-static PetscErrorCode Pressure_PG(540,18885
-static PetscErrorCode SpeedOfSound_PG(552,19179
-static PetscErrorCode EulerFlux(572,19677
-static PetscErrorCode PhysicsBoundary_Euler_Wall(591,20227
-static PetscErrorCode PhysicsRiemann_Euler_Rusanov(605,20671
-static PetscErrorCode PhysicsSolution_Euler(624,21600
-static PetscErrorCode PhysicsFunctional_Euler(636,21995
-static PetscErrorCode PhysicsCreate_Euler(653,22591
-PetscErrorCode ConstructCellBoundary(689,24323
-PetscErrorCode SplitFaces(761,27769
-PetscErrorCode CreatePartitionVec(959,35981
-PetscErrorCode CreateMassMatrix(998,37522
-PetscErrorCode SetUpLocalSpace(1074,41025
-PetscErrorCode SetUpBoundaries(1116,42837
-static PetscErrorCode ModelSolutionSetDefault(1144,43787
-static PetscErrorCode ModelFunctionalRegister(1152,43988
-static PetscErrorCode ModelFunctionalSetFromOptions(1170,44567
-static PetscErrorCode FunctionalLinkDestroy(1211,46446
-PetscErrorCode SetInitialCondition(1227,46778
-static PetscErrorCode OutputVTK(1257,47808
-static PetscErrorCode MonitorVTK(1266,48135
-static PetscErrorCode OutputBIN(1373,52737
-static PetscErrorCode TestMonitor(1383,53130
-static PetscErrorCode MonitorBIN(1416,54247
-int main(1435,54914
-
-src/ts/tutorials/ex11.c,7072
-ex11.c:^?ex11.c^A,1
-static char help[help1,0
-#define DIM 42,1867
-static PetscFunctionList PhysicsList,44,1908
-static PetscFunctionList PhysicsList, PhysicsRiemannList_SW;44,1908
-typedef struct _n_Physics *Physics;Physics47,2017
-typedef struct _n_Model *Model;Model51,2244
-typedef struct _n_User *User;User54,2341
-typedef PetscErrorCode (*SolutionFunction)SolutionFunction55,2371
-typedef PetscErrorCode (*SetUpBCFunction)SetUpBCFunction56,2475
-typedef PetscErrorCode (*FunctionalFunction)FunctionalFunction57,2540
-typedef PetscErrorCode (*SetupFields)SetupFields58,2665
-struct FieldDescription 63,2982
- const char *name;name64,3008
- PetscInt dof;65,3028
-typedef struct _n_FunctionalLink *FunctionalLink;FunctionalLink68,3051
-struct _n_FunctionalLink 69,3101
- char *name;name70,3128
- FunctionalFunction func;71,3155
- void *ctx;ctx72,3182
- PetscInt offset;73,3208
- FunctionalLink next;74,3237
-struct _n_Physics 77,3268
- PetscRiemannFunc riemann;78,3288
- PetscInt dof;79,3330
- PetscReal maxspeed;80,3417
- void *data;data81,3540
- PetscInt nfields;82,3579
- const struct FieldDescription *field_desc;field_desc83,3621
-struct _n_Model 86,3670
- MPI_Comm comm;87,3688
- Physics physics;88,3800
- FunctionalLink functionalRegistry;89,3828
- PetscInt maxComputed;90,3867
- PetscInt numMonitored;91,3899
- FunctionalLink *functionalMonitored;functionalMonitored92,3932
- PetscInt numCall;93,3972
- FunctionalLink *functionalCall;functionalCall94,4000
- SolutionFunction solution;95,4035
- SetUpBCFunction setupbc;96,4064
- void *solutionctx;solutionctx97,4092
- PetscReal maxspeed;98,4124
- PetscReal bounds[bounds99,4214
- PetscErrorCode (*errorIndicator)errorIndicator100,4250
- void *errorCtx;errorCtx101,4380
-struct _n_User 104,4402
- PetscInt vtkInterval;105,4419
- char outputBasename[outputBasename106,4485
- PetscInt monitorStepOffset;107,4565
- Model model;108,4596
- PetscBool vtkmon;109,4615
-static inline PetscReal DotDIMReal(112,4639
-static inline PetscReal NormDIM(120,4822
-static inline PetscReal Dot2Real(125,4935
-static inline PetscReal Norm2Real(129,5048
-static inline void Normalize2Real(133,5160
-static inline void Waxpy2Real(139,5273
-static inline void Scale2Real(144,5426
- ADVECT_SOL_TILTED,152,5611
- ADVECT_SOL_BUMP,153,5632
- ADVECT_SOL_BUMP_CAVITY154,5651
-} AdvectSolType;155,5676
-static const char *const AdvectSolTypes[AdvectSolTypes156,5693
- ADVECT_SOL_BUMP_CONE,158,5822
- ADVECT_SOL_BUMP_COS159,5846
-} AdvectSolBumpType;160,5868
-static const char *const AdvectSolBumpTypes[AdvectSolBumpTypes161,5889
- PetscReal wind[wind164,6016
-} Physics_Advect_Tilted;165,6039
- PetscReal center[center167,6081
- PetscReal radius;168,6114
- AdvectSolBumpType type;169,6142
-} Physics_Advect_Bump;170,6168
- PetscReal inflowState;173,6209
- AdvectSolType soltype;174,6238
- Physics_Advect_Tilted tilted;177,6275
- Physics_Advect_Bump bump;178,6309
- } sol;179,6341
- PetscInt Solution;181,6361
- PetscInt Error;182,6384
- } functional;183,6404
-} Physics_Advect;184,6420
-static const struct FieldDescription PhysicsFields_Advect[PhysicsFields_Advect186,6439
-static PetscErrorCode PhysicsBoundary_Advect_Inflow(191,6532
-static PetscErrorCode PhysicsBoundary_Advect_Outflow(201,6878
-static void PhysicsRiemann_Advect(208,7112
-static PetscErrorCode PhysicsSolution_Advect(258,8557
-static PetscErrorCode PhysicsFunctional_Advect(297,9838
-static PetscErrorCode SetUpBC_Advect(310,10368
-static PetscErrorCode PhysicsCreate_Advect(323,11135
- PetscReal gravity;376,13666
- PetscReal boundaryHeight;377,13687
- PetscInt Height;379,13726
- PetscInt Speed;380,13747
- PetscInt Energy;381,13767
- } functional;382,13788
-} Physics_SW;383,13804
- PetscReal h;385,13835
- PetscReal uh[uh386,13850
-} SWNode;387,13871
- SWNode swnode;390,13897
- PetscReal vals[vals391,13917
-} SWNodeUnion;392,13944
-static const struct FieldDescription PhysicsFields_SW[PhysicsFields_SW394,13960
-static PetscErrorCode SWFlux(405,14167
-static PetscErrorCode PhysicsBoundary_SW_Wall(419,14587
-static void PhysicsRiemann_SW_HLL(428,14850
-static void PhysicsRiemann_SW_Rusanov(478,16704
-static PetscErrorCode PhysicsSolution_SW(515,18190
-static PetscErrorCode PhysicsFunctional_SW(531,18676
-static PetscErrorCode SetUpBC_SW(548,19286
-static PetscErrorCode PhysicsCreate_SW(559,19730
- EULER_PAR_GAMMA,598,21704
- EULER_PAR_RHOR,599,21723
- EULER_PAR_AMACH,600,21741
- EULER_PAR_ITANA,601,21760
- EULER_PAR_SIZE602,21779
-} EulerParamIdx;603,21796
- EULER_IV_SHOCK,605,21828
- EULER_SS_SHOCK,606,21846
- EULER_SHOCK_TUBE,607,21864
- EULER_LINEAR_WAVE608,21884
-} EulerType;609,21904
- PetscReal r;611,21934
- PetscReal ru[ru612,21949
- PetscReal E;613,21970
-} EulerNode;614,21985
- EulerNode eulernode;617,22014
- PetscReal vals[vals618,22037
-} EulerNodeUnion;619,22064
-typedef PetscErrorCode (*EquationOfState)EquationOfState620,22082
- EulerType type;622,22193
- PetscReal pars[pars623,22217
- EquationOfState sound;624,22257
- PetscInt Density;626,22293
- PetscInt Momentum;627,22315
- PetscInt Energy;628,22338
- PetscInt Pressure;629,22359
- PetscInt Speed;630,22382
- } monitor;631,22402
-} Physics_Euler;632,22415
-static const struct FieldDescription PhysicsFields_Euler[PhysicsFields_Euler634,22433
-static PetscErrorCode PhysicsSolution_Euler(643,22728
-static PetscErrorCode Pressure_PG(704,25363
-static PetscErrorCode SpeedOfSound_PG(714,25665
-static PetscErrorCode EulerFlux(733,26207
-static PetscErrorCode PhysicsBoundary_Euler_Wall(750,26895
-static void PhysicsRiemann_Euler_Godunov(775,28215
-static PetscErrorCode PhysicsFunctional_Euler(811,29657
-static PetscErrorCode SetUpBC_Euler(828,30269
-static PetscErrorCode PhysicsCreate_Euler(845,31069
-static PetscErrorCode ErrorIndicator_Simple(910,34539
-PetscErrorCode CreatePartitionVec(923,34955
-PetscErrorCode CreateMassMatrix(962,36496
-static PetscErrorCode ModelSolutionSetDefault(1039,40076
-static PetscErrorCode ModelFunctionalRegister(1047,40277
-static PetscErrorCode ModelFunctionalSetFromOptions(1065,40856
-static PetscErrorCode FunctionalLinkDestroy(1106,42739
-static PetscErrorCode SolutionFunctional(1123,43130
-PetscErrorCode SetInitialCondition(1132,43424
-static PetscErrorCode OutputVTK(1145,43836
-static PetscErrorCode MonitorVTK(1154,44163
-static PetscErrorCode initializeTS(1271,49194
-static PetscErrorCode adaptToleranceFVM(1285,49767
-int main(1388,54834
-PetscScalar cvmgp_(1777,71075
-PetscScalar cvmgm_(1790,71335
-int riem1mdt(1803,71595
-PetscScalar sign(1973,78247
-int riemannsolver(1981,78481
-int godunovflux(2073,81735
-int projecteqstate(2184,84980
-int projecttoprim(2195,85305
-int eigenvectors(2206,85621
-int initLinearWave(2237,86306
-
src/ts/tutorials/ex10.c,3584
ex10.c:^?ex10.c^A,1
BC_DIRICHLET,17,496
@@ -8672,37 +8672,6 @@
PetscErrorCode MyMatMult(555,20538
PetscErrorCode ComputeObjHessianWithSOA(568,20860
-src/ts/tutorials/network/pipeInterface.c,329
-pipeInterface.c:^?pipeInterface.c^A,1
-PetscErrorCode PipeCreate(15,297
-PetscErrorCode PipeDestroy(28,552
-PetscErrorCode PipeSetParameters(50,952
-PetscErrorCode PipeSetUp(63,1256
-PetscErrorCode PipeCreateJacobian(98,2289
-PetscErrorCode PipeDestroyJacobian(160,4312
-PetscErrorCode JunctionCreateJacobian(188,4918
-PetscErrorCode JunctionDestroyJacobian(262,8098
-
-src/ts/tutorials/network/pipes.c,390
-pipes.c:^?pipes.c^A,1
-static char help[help1,0
-PetscErrorCode WashNetworkDistribute(19,585
-PetscErrorCode WASHIFunction(98,3491
-PetscErrorCode WASHSetInitialSolution(226,8631
-PetscErrorCode TSDMNetworkMonitor(288,11029
-PetscErrorCode PipesView(298,11288
-PetscErrorCode ISJunctionsView(380,14746
-PetscErrorCode WashNetworkCleanUp(407,15703
-PetscErrorCode WashNetworkCreate(419,16017
-int main(609,21558
-
-src/ts/tutorials/network/pipeImpls.c,173
-pipeImpls.c:^?pipeImpls.c^A,1
-PetscErrorCode PipeComputeSteadyState(10,205
-static inline PetscScalar dqdx(38,1144
-static inline PetscScalar dhdx(49,1421
-PetscErrorCode PipeIFunctionLocal_Lax(60,1698
-
src/ts/tutorials/network/wash.h,1400
wash.h:^?wash.h^A,1
#define WASH_H2,15
@@ -8745,16 +8714,47 @@
PetscInt *edgelist;edgelist56,1444
Vec localX,57,1497
Vec localX, localXdot;57,1497
- PetscInt nnodes_loc;58,1577
- Junction junction;61,1662
- PetscInt *vtype;vtype62,1684
- Pipe pipe;65,1717
- PetscScalar Q0,66,1737
- PetscScalar Q0, H0,66,1737
- PetscScalar Q0, H0, QL,66,1737
- PetscScalar Q0, H0, QL, HL;66,1737
- PetscInt close_valve;69,1863
-typedef struct _p_Wash *Wash;Wash71,1960
+ PetscInt nnodes_loc;58,1576
+ Junction junction;61,1661
+ PetscInt *vtype;vtype62,1683
+ Pipe pipe;65,1716
+ PetscScalar Q0,66,1736
+ PetscScalar Q0, H0,66,1736
+ PetscScalar Q0, H0, QL,66,1736
+ PetscScalar Q0, H0, QL, HL;66,1736
+ PetscInt close_valve;69,1862
+typedef struct _p_Wash *Wash;Wash71,1959
+
+src/ts/tutorials/network/pipeInterface.c,329
+pipeInterface.c:^?pipeInterface.c^A,1
+PetscErrorCode PipeCreate(15,297
+PetscErrorCode PipeDestroy(28,552
+PetscErrorCode PipeSetParameters(50,952
+PetscErrorCode PipeSetUp(63,1256
+PetscErrorCode PipeCreateJacobian(98,2289
+PetscErrorCode PipeDestroyJacobian(160,4312
+PetscErrorCode JunctionCreateJacobian(188,4918
+PetscErrorCode JunctionDestroyJacobian(262,8098
+
+src/ts/tutorials/network/pipes.c,390
+pipes.c:^?pipes.c^A,1
+static char help[help1,0
+PetscErrorCode WashNetworkDistribute(19,585
+PetscErrorCode WASHIFunction(98,3491
+PetscErrorCode WASHSetInitialSolution(226,8631
+PetscErrorCode TSDMNetworkMonitor(288,11029
+PetscErrorCode PipesView(298,11288
+PetscErrorCode ISJunctionsView(380,14746
+PetscErrorCode WashNetworkCleanUp(407,15703
+PetscErrorCode WashNetworkCreate(419,16017
+int main(609,21558
+
+src/ts/tutorials/network/pipeImpls.c,173
+pipeImpls.c:^?pipeImpls.c^A,1
+PetscErrorCode PipeComputeSteadyState(10,205
+static inline PetscScalar dqdx(38,1144
+static inline PetscScalar dhdx(49,1421
+PetscErrorCode PipeIFunctionLocal_Lax(60,1698
src/ts/tutorials/network/pipe.h,775
pipe.h:^?pipe.h^A,1
@@ -8794,16 +8794,6 @@
OBJECTS_PIPE 4,75
pipes:pipes9,208
-src/ts/tutorials/multirate/makefile,108
-makefile:^?makefile^A,1
-LOCDIR 3,34
-MANSEC 4,80
-OBJECTS_FV 5,101
-ex4:ex410,226
-ex5:ex511,251
-ex6:ex612,276
-ex8:ex813,301
-
src/ts/tutorials/multirate/finitevolume1d.h,2782
finitevolume1d.h:^?finitevolume1d.h^A,1
typedef struct _LimitInfo 4,43
@@ -8817,71 +8807,97 @@
FVBC_OUTFLOW,35,2137
FVBC_INFLOW36,2153
} FVBCType;37,2167
-typedef PetscErrorCode (*RiemannFunction)RiemannFunction40,2367
-typedef PetscErrorCode (*ReconstructFunction)ReconstructFunction41,2531
- PetscErrorCode (*sample)sample50,3090
- RiemannFunction riemann;51,3203
- ReconstructFunction characteristic;52,3234
- PetscErrorCode (*destroy)destroy53,3272
- void *user;user54,3309
- PetscInt dof;55,3326
- char *fieldname[fieldname56,3342
-} PhysicsCtx;57,3368
-typedef PetscErrorCode (*RiemannFunction_2WaySplit)RiemannFunction_2WaySplit77,6199
-typedef PetscErrorCode (*ReconstructFunction_2WaySplit)ReconstructFunction_2WaySplit78,6340
- PetscErrorCode (*sample2)sample286,6928
- PetscErrorCode (*inflow)inflow87,7042
- RiemannFunction_2WaySplit riemann2;88,7113
- ReconstructFunction_2WaySplit characteristic2;89,7155
- PetscErrorCode (*destroy)destroy90,7204
- void *user;user91,7241
- PetscInt dof;92,7260
- char *fieldname[fieldname93,7278
- PetscBool *bcinflowindex;bcinflowindex94,7306
-} PhysicsCtx2;97,7668
- void (*limit)limit100,7701
- PhysicsCtx physics;101,7786
- MPI_Comm comm;102,7808
- char prefix[prefix103,7827
- PetscScalar *R,R106,7880
- PetscScalar *R, *Rinv;Rinv106,7880
- PetscScalar *cjmpLR;cjmpLR107,7965
- PetscScalar *cslope;cslope108,8069
- PetscScalar *uLR;uLR109,8147
- PetscScalar *flux;flux110,8253
- PetscReal *speeds;speeds111,8306
- PetscReal *ub;ub112,8357
- PetscReal cfl_idt;114,8434
- PetscReal cfl;115,8494
- PetscReal xmin,116,8511
- PetscReal xmin, xmax;116,8511
- PetscInt initial;117,8535
- PetscBool simulation;118,8556
- FVBCType bctype;119,8580
- PetscBool exact;120,8600
- void (*limit3)limit3123,8659
- void (*limit2)limit2124,8819
- PhysicsCtx2 physics2;125,8935
- PetscInt hratio;126,8959
- IS isf,127,9008
- IS isf, iss,127,9008
- IS isf, iss, isf2,127,9008
- IS isf, iss, isf2, iss2,127,9008
- IS isf, iss, isf2, iss2, ism,127,9008
- IS isf, iss, isf2, iss2, ism, issb,127,9008
- IS isf, iss, isf2, iss2, ism, issb, ismb;127,9008
- PetscBool recursive;128,9061
- PetscInt sm,129,9086
- PetscInt sm, mf,129,9086
- PetscInt sm, mf, fm,129,9086
- PetscInt sm, mf, fm, ms;129,9086
- PetscInt sf,130,9216
- PetscInt sf, fs;130,9216
- PetscInt lsbwidth,131,9291
- PetscInt lsbwidth, rsbwidth;131,9291
- PetscInt lmbwidth,132,9382
- PetscInt lmbwidth, rmbwidth;132,9382
-} FVCtx;133,9477
+typedef PetscErrorCode (*RiemannFunction)RiemannFunction40,2368
+typedef PetscErrorCode (*ReconstructFunction)ReconstructFunction41,2532
+ PetscErrorCode (*sample)sample50,3091
+ RiemannFunction riemann;51,3204
+ ReconstructFunction characteristic;52,3235
+ PetscErrorCode (*destroy)destroy53,3273
+ void *user;user54,3310
+ PetscInt dof;55,3327
+ char *fieldname[fieldname56,3343
+} PhysicsCtx;57,3369
+typedef PetscErrorCode (*RiemannFunction_2WaySplit)RiemannFunction_2WaySplit77,6200
+typedef PetscErrorCode (*ReconstructFunction_2WaySplit)ReconstructFunction_2WaySplit78,6341
+ PetscErrorCode (*sample2)sample286,6929
+ PetscErrorCode (*inflow)inflow87,7043
+ RiemannFunction_2WaySplit riemann2;88,7114
+ ReconstructFunction_2WaySplit characteristic2;89,7156
+ PetscErrorCode (*destroy)destroy90,7205
+ void *user;user91,7242
+ PetscInt dof;92,7261
+ char *fieldname[fieldname93,7279
+ PetscBool *bcinflowindex;bcinflowindex94,7307
+} PhysicsCtx2;97,7669
+ void (*limit)limit100,7702
+ PhysicsCtx physics;101,7787
+ MPI_Comm comm;102,7809
+ char prefix[prefix103,7828
+ PetscScalar *R,R106,7881
+ PetscScalar *R, *Rinv;Rinv106,7881
+ PetscScalar *cjmpLR;cjmpLR107,7966
+ PetscScalar *cslope;cslope108,8070
+ PetscScalar *uLR;uLR109,8148
+ PetscScalar *flux;flux110,8254
+ PetscReal *speeds;speeds111,8307
+ PetscReal *ub;ub112,8358
+ PetscReal cfl_idt;114,8435
+ PetscReal cfl;115,8495
+ PetscReal xmin,116,8512
+ PetscReal xmin, xmax;116,8512
+ PetscInt initial;117,8536
+ PetscBool simulation;118,8557
+ FVBCType bctype;119,8581
+ PetscBool exact;120,8601
+ void (*limit3)limit3123,8660
+ void (*limit2)limit2124,8820
+ PhysicsCtx2 physics2;125,8936
+ PetscInt hratio;126,8960
+ IS isf,127,9009
+ IS isf, iss,127,9009
+ IS isf, iss, isf2,127,9009
+ IS isf, iss, isf2, iss2,127,9009
+ IS isf, iss, isf2, iss2, ism,127,9009
+ IS isf, iss, isf2, iss2, ism, issb,127,9009
+ IS isf, iss, isf2, iss2, ism, issb, ismb;127,9009
+ PetscBool recursive;128,9062
+ PetscInt sm,129,9087
+ PetscInt sm, mf,129,9087
+ PetscInt sm, mf, fm,129,9087
+ PetscInt sm, mf, fm, ms;129,9087
+ PetscInt sf,130,9217
+ PetscInt sf, fs;130,9217
+ PetscInt lsbwidth,131,9292
+ PetscInt lsbwidth, rsbwidth;131,9292
+ PetscInt lmbwidth,132,9383
+ PetscInt lmbwidth, rmbwidth;132,9383
+} FVCtx;133,9478
+
+src/ts/tutorials/multirate/ex5.c,539
+ex5.c:^?ex5.c^A,1
+static const char help[help13,811
+static inline PetscReal RangeMod(34,2172
+ PetscReal a[a43,2463
+} AdvectCtx;44,2506
+static PetscErrorCode PhysicsRiemann_Advect(46,2520
+static PetscErrorCode PhysicsCharacteristic_Advect(61,3433
+static PetscErrorCode PhysicsSample_Advect(73,3821
+static PetscErrorCode PhysicsCreate_Advect(161,6141
+PetscErrorCode FVRHSFunctionslow(187,7121
+PetscErrorCode FVRHSFunctionfast(292,11456
+PetscErrorCode FVRHSFunctionslow2(393,15456
+PetscErrorCode FVRHSFunctionfast2(508,20360
+int main(610,24499
+
+src/ts/tutorials/multirate/makefile,108
+makefile:^?makefile^A,1
+LOCDIR 3,34
+MANSEC 4,80
+OBJECTS_FV 5,101
+ex4:ex410,226
+ex5:ex511,251
+ex6:ex612,276
+ex8:ex813,301
src/ts/tutorials/multirate/finitevolume1d.c,2019
finitevolume1d.c:^?finitevolume1d.c^A,1
@@ -9029,22 +9045,6 @@
PetscErrorCode FVRHSFunctionfast_2WaySplit(631,26311
int main(740,30570
-src/ts/tutorials/multirate/ex5.c,539
-ex5.c:^?ex5.c^A,1
-static const char help[help13,811
-static inline PetscReal RangeMod(34,2172
- PetscReal a[a43,2463
-} AdvectCtx;44,2506
-static PetscErrorCode PhysicsRiemann_Advect(46,2520
-static PetscErrorCode PhysicsCharacteristic_Advect(61,3432
-static PetscErrorCode PhysicsSample_Advect(73,3820
-static PetscErrorCode PhysicsCreate_Advect(161,6140
-PetscErrorCode FVRHSFunctionslow(187,7120
-PetscErrorCode FVRHSFunctionfast(292,11455
-PetscErrorCode FVRHSFunctionslow2(393,15455
-PetscErrorCode FVRHSFunctionfast2(508,20359
-int main(610,24498
-
src/ts/tutorials/multirate/ex4.c,1422
ex4.c:^?ex4.c^A,1
static const char help[help6,89
@@ -9473,18 +9473,52 @@
PetscLogEvent event1, event2, event3, event4;39,835
} AdolcMatCtx;40,883
+src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c,407
+ex5opt_ic.c:^?ex5opt_ic.c^A,1
+static char help[help1,0
+PetscErrorCode InitializeLambda(29,1261
+PetscErrorCode OutputBIN(51,1948
+PetscErrorCode GenerateOBs(64,2399
+PetscErrorCode InitialConditions(80,2849
+PetscErrorCode PerturbedInitialConditions(112,3912
+PetscErrorCode PerturbedInitialConditions2(144,4996
+PetscErrorCode PerturbedInitialConditions3(177,6153
+int main(209,7226
+PetscErrorCode FormFunctionAndGradient(334,11649
+
+src/ts/tutorials/advection-diffusion-reaction/ex4.c,753
+ex4.c:^?ex4.c^A,1
+static char help[help2,1
+ PetscScalar rho,30,784
+ PetscScalar rho, c;30,784
+} Field;31,806
+ PetscScalar epsilon,34,833
+ PetscScalar epsilon, delta,34,833
+ PetscScalar epsilon, delta, alpha,34,833
+ PetscScalar epsilon, delta, alpha, beta,34,833
+ PetscScalar epsilon, delta, alpha, beta, gamma,34,833
+ PetscScalar epsilon, delta, alpha, beta, gamma, kappa,34,833
+ PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda,34,833
+ PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda, mu,34,833
+ PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda, mu, cstar;34,833
+ PetscBool upwind;35,909
+} AppCtx;36,931
+int main(43,1073
+PetscErrorCode IFunction(136,4557
+PetscErrorCode InitialConditions(219,7427
+
src/ts/tutorials/advection-diffusion-reaction/ex1.c,314
ex1.c:^?ex1.c^A,1
static char help[help2,1
- PetscScalar k;74,3587
- Vec initialsolution;75,3604
-} AppCtx;76,3635
-PetscErrorCode IFunctionView(78,3646
-PetscErrorCode IFunctionLoad(85,3822
-PetscErrorCode IFunction(96,4087
-PetscErrorCode IJacobian(118,4863
-static PetscErrorCode Solution(152,5886
-int main(171,6492
+ PetscScalar k;74,3588
+ Vec initialsolution;75,3605
+} AppCtx;76,3636
+PetscErrorCode IFunctionView(78,3647
+PetscErrorCode IFunctionLoad(85,3823
+PetscErrorCode IFunction(96,4088
+PetscErrorCode IJacobian(118,4864
+static PetscErrorCode Solution(152,5887
+int main(171,6493
src/ts/tutorials/advection-diffusion-reaction/shashi.F90,320
shashi.F90:^?shashi.F90^A,1
@@ -9541,19 +9575,6 @@
PetscErrorCode IFunction_LaxFriedrichs(192,6440
PetscErrorCode IFunction_LaxWendroff(240,8072
-src/ts/tutorials/advection-diffusion-reaction/ex5opt_ic.c,407
-ex5opt_ic.c:^?ex5opt_ic.c^A,1
-static char help[help1,0
-PetscErrorCode InitializeLambda(29,1261
-PetscErrorCode OutputBIN(51,1948
-PetscErrorCode GenerateOBs(64,2399
-PetscErrorCode InitialConditions(80,2849
-PetscErrorCode PerturbedInitialConditions(112,3912
-PetscErrorCode PerturbedInitialConditions2(144,4996
-PetscErrorCode PerturbedInitialConditions3(177,6153
-int main(209,7226
-PetscErrorCode FormFunctionAndGradient(334,11649
-
src/ts/tutorials/advection-diffusion-reaction/ex5adj_mf.c,539
ex5adj_mf.c:^?ex5adj_mf.c^A,1
static char help[help1,0
@@ -9586,27 +9607,6 @@
PetscErrorCode InitialConditions(43,1835
int main(87,3083
-src/ts/tutorials/advection-diffusion-reaction/ex4.c,753
-ex4.c:^?ex4.c^A,1
-static char help[help2,1
- PetscScalar rho,30,783
- PetscScalar rho, c;30,783
-} Field;31,805
- PetscScalar epsilon,34,832
- PetscScalar epsilon, delta,34,832
- PetscScalar epsilon, delta, alpha,34,832
- PetscScalar epsilon, delta, alpha, beta,34,832
- PetscScalar epsilon, delta, alpha, beta, gamma,34,832
- PetscScalar epsilon, delta, alpha, beta, gamma, kappa,34,832
- PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda,34,832
- PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda, mu,34,832
- PetscScalar epsilon, delta, alpha, beta, gamma, kappa, lambda, mu, cstar;34,832
- PetscBool upwind;35,908
-} AppCtx;36,930
-int main(43,1072
-PetscErrorCode IFunction(136,4556
-PetscErrorCode InitialConditions(219,7426
-
src/ts/tutorials/advection-diffusion-reaction/ex3.c,262
ex3.c:^?ex3.c^A,1
static char help[help2,1
@@ -10003,6 +10003,36 @@
PetscErrorCode RhsFunc(585,26753
PetscErrorCode Monitor(707,34503
+src/ts/tests/ex28.c,1001
+ex28.c:^?ex28.c^A,1
+static char help[help1,0
+ PetscInt particlesPerCell;12,380
+ PetscReal momentTol;13,450
+ PetscBool monitorhg;14,531
+ PetscBool monitorsp;15,609
+ PetscBool monitorks;16,685
+ PetscBool error;17,768
+ PetscInt ostep;18,834
+ PetscDraw draw;19,914
+ PetscDrawHG drawhg;20,993
+ PetscDrawSP drawsp;21,1073
+ PetscDrawSP drawks;22,1157
+} AppCtx;23,1232
+static PetscErrorCode ProcessOptions(25,1243
+static PetscErrorCode CreateMesh(47,2470
+static PetscErrorCode SetInitialCoordinates(58,2872
+static PetscErrorCode SetInitialConditions(120,5353
+static PetscErrorCode CreateParticles(149,6481
+static PetscReal ComputePDF(193,8325
+static PetscReal ComputeCDF(212,8949
+static PetscErrorCode CheckDistribution(224,9291
+static PetscErrorCode RHSFunctionParticles(269,11658
+static PetscErrorCode HGMonitor(347,14954
+static PetscErrorCode SPMonitor(378,16076
+static PetscErrorCode KSConv(411,17333
+static PetscErrorCode InitializeSolve(461,19231
+int main(477,19819
+
src/ts/tests/makefile,26
makefile:^?makefile^A,1
LOCDIR 3,31
@@ -10151,36 +10181,6 @@
static PetscErrorCode RHSFunction(5,71
int main(22,581
-src/ts/tests/ex28.c,1001
-ex28.c:^?ex28.c^A,1
-static char help[help1,0
- PetscInt particlesPerCell;12,380
- PetscReal momentTol;13,450
- PetscBool monitorhg;14,531
- PetscBool monitorsp;15,609
- PetscBool monitorks;16,685
- PetscBool error;17,768
- PetscInt ostep;18,834
- PetscDraw draw;19,914
- PetscDrawHG drawhg;20,993
- PetscDrawSP drawsp;21,1073
- PetscDrawSP drawks;22,1157
-} AppCtx;23,1232
-static PetscErrorCode ProcessOptions(25,1243
-static PetscErrorCode CreateMesh(47,2470
-static PetscErrorCode SetInitialCoordinates(58,2872
-static PetscErrorCode SetInitialConditions(120,5353
-static PetscErrorCode CreateParticles(149,6481
-static PetscReal ComputePDF(193,8325
-static PetscReal ComputeCDF(212,8949
-static PetscErrorCode CheckDistribution(224,9291
-static PetscErrorCode RHSFunctionParticles(269,11658
-static PetscErrorCode HGMonitor(347,14954
-static PetscErrorCode SPMonitor(378,16076
-static PetscErrorCode KSConv(411,17333
-static PetscErrorCode InitializeSolve(461,19231
-int main(477,19819
-
src/ts/tests/ex27.c,898
ex27.c:^?ex27.c^A,1
static char help[help1,0
@@ -11298,39 +11298,39 @@
static PetscErrorCode TSStep_Theta(182,6915
static PetscErrorCode TSAdjointStepBEuler_Private(249,9700
static PetscErrorCode TSAdjointStep_Theta(394,16722
-static PetscErrorCode TSInterpolate_Theta(653,30534
-static PetscErrorCode TSEvaluateWLTE_Theta(665,30854
-static PetscErrorCode TSRollBack_Theta(702,31973
-static PetscErrorCode TSForwardStep_Theta(716,32550
-static PetscErrorCode TSForwardGetStages_Theta(845,39168
-static PetscErrorCode TSReset_Theta(867,39865
-static PetscErrorCode TSAdjointReset_Theta(884,40280
-static PetscErrorCode TSDestroy_Theta(898,40792
-static PetscErrorCode SNESTSFormFunction_Theta(922,41855
-static PetscErrorCode SNESTSFormJacobian_Theta(947,42692
-static PetscErrorCode TSForwardSetUp_Theta(967,43325
-static PetscErrorCode TSForwardReset_Theta(987,44179
-static PetscErrorCode TSSetUp_Theta(1003,44660
-static PetscErrorCode TSAdjointSetUp_Theta(1040,46109
-static PetscErrorCode TSSetFromOptions_Theta(1064,47383
-static PetscErrorCode TSView_Theta(1079,48200
-static PetscErrorCode TSThetaGetTheta_Theta(1093,48665
-static PetscErrorCode TSThetaSetTheta_Theta(1102,48849
-static PetscErrorCode TSThetaGetEndpoint_Theta(1113,49218
-static PetscErrorCode TSThetaSetEndpoint_Theta(1122,49414
-static PetscErrorCode TSComputeLinearStability_Theta(1132,49630
-static PetscErrorCode TSGetStages_Theta(1146,50064
-PETSC_EXTERN PetscErrorCode TSCreate_Theta(1214,52346
-PetscErrorCode TSThetaGetTheta(1285,54793
-PetscErrorCode TSThetaSetTheta(1310,55388
-PetscErrorCode TSThetaGetEndpoint(1333,56008
-PetscErrorCode TSThetaSetEndpoint(1358,56712
-static PetscErrorCode TSSetUp_BEuler(1371,57082
-static PetscErrorCode TSView_BEuler(1382,57591
-PETSC_EXTERN PetscErrorCode TSCreate_BEuler(1399,57997
-static PetscErrorCode TSSetUp_CN(1410,58292
-static PetscErrorCode TSView_CN(1421,58798
-PETSC_EXTERN PetscErrorCode TSCreate_CN(1442,59264
+static PetscErrorCode TSInterpolate_Theta(653,30533
+static PetscErrorCode TSEvaluateWLTE_Theta(665,30853
+static PetscErrorCode TSRollBack_Theta(702,31972
+static PetscErrorCode TSForwardStep_Theta(716,32549
+static PetscErrorCode TSForwardGetStages_Theta(845,39167
+static PetscErrorCode TSReset_Theta(867,39864
+static PetscErrorCode TSAdjointReset_Theta(884,40279
+static PetscErrorCode TSDestroy_Theta(898,40791
+static PetscErrorCode SNESTSFormFunction_Theta(922,41854
+static PetscErrorCode SNESTSFormJacobian_Theta(947,42691
+static PetscErrorCode TSForwardSetUp_Theta(967,43324
+static PetscErrorCode TSForwardReset_Theta(987,44178
+static PetscErrorCode TSSetUp_Theta(1003,44659
+static PetscErrorCode TSAdjointSetUp_Theta(1040,46108
+static PetscErrorCode TSSetFromOptions_Theta(1064,47382
+static PetscErrorCode TSView_Theta(1079,48199
+static PetscErrorCode TSThetaGetTheta_Theta(1093,48664
+static PetscErrorCode TSThetaSetTheta_Theta(1102,48848
+static PetscErrorCode TSThetaGetEndpoint_Theta(1113,49217
+static PetscErrorCode TSThetaSetEndpoint_Theta(1122,49413
+static PetscErrorCode TSComputeLinearStability_Theta(1132,49629
+static PetscErrorCode TSGetStages_Theta(1146,50063
+PETSC_EXTERN PetscErrorCode TSCreate_Theta(1214,52345
+PetscErrorCode TSThetaGetTheta(1285,54792
+PetscErrorCode TSThetaSetTheta(1310,55387
+PetscErrorCode TSThetaGetEndpoint(1333,56007
+PetscErrorCode TSThetaSetEndpoint(1358,56711
+static PetscErrorCode TSSetUp_BEuler(1371,57081
+static PetscErrorCode TSView_BEuler(1382,57590
+PETSC_EXTERN PetscErrorCode TSCreate_BEuler(1399,57996
+static PetscErrorCode TSSetUp_CN(1410,58291
+static PetscErrorCode TSView_CN(1421,58797
+PETSC_EXTERN PetscErrorCode TSCreate_CN(1442,59263
src/ts/impls/implicit/theta/makefile,84
makefile:^?makefile^A,1
@@ -12056,9 +12056,26 @@
static PetscErrorCode TSDestroy_RK(1366,68273
static PetscErrorCode SNESTSFormFunction_RK(1392,69688
static PetscErrorCode SNESTSFormJacobian_RK(1407,70130
-PetscErrorCode TSRKSetMultirate(1440,71156
-PetscErrorCode TSRKGetMultirate(1462,71715
-PETSC_EXTERN PetscErrorCode TSCreate_RK(1483,72458
+PetscErrorCode TSRKSetMultirate(1440,71157
+PetscErrorCode TSRKGetMultirate(1462,71716
+PETSC_EXTERN PetscErrorCode TSCreate_RK(1483,72459
+
+src/ts/impls/explicit/rk/mrk.c,812
+mrk.c:^?mrk.c^A,1
+static PetscErrorCode TSReset_RK_MultirateNonsplit(19,627
+static PetscErrorCode TSInterpolate_RK_MultirateNonsplit(30,897
+static PetscErrorCode TSStepRefine_RK_MultirateNonsplit(53,1732
+static PetscErrorCode TSStep_RK_MultirateNonsplit(118,4667
+static PetscErrorCode TSSetUp_RK_MultirateNonsplit(173,6828
+static PetscErrorCode TSCopyDM(197,8070
+static PetscErrorCode TSReset_RK_MultirateSplit(212,8467
+static PetscErrorCode TSInterpolate_RK_MultirateSplit(232,8997
+static PetscErrorCode TSEvaluateStep_RK_MultirateSplit(280,10670
+static PetscErrorCode TSStepRefine_RK_MultirateSplit(305,11654
+static PetscErrorCode TSStep_RK_MultirateSplit(364,14645
+static PetscErrorCode TSSetUp_RK_MultirateSplit(417,17052
+PetscErrorCode TSRKSetMultirate_RK(478,19899
+PetscErrorCode TSRKGetMultirate_RK(501,21095
src/ts/impls/explicit/rk/rk.h,1818
rk.h:^?rk.h^A,1
@@ -12111,23 +12128,6 @@
Vec VecDeltaFwdSensipCol;45,2550
} TS_RK;46,2657
-src/ts/impls/explicit/rk/mrk.c,812
-mrk.c:^?mrk.c^A,1
-static PetscErrorCode TSReset_RK_MultirateNonsplit(19,627
-static PetscErrorCode TSInterpolate_RK_MultirateNonsplit(30,897
-static PetscErrorCode TSStepRefine_RK_MultirateNonsplit(53,1732
-static PetscErrorCode TSStep_RK_MultirateNonsplit(118,4667
-static PetscErrorCode TSSetUp_RK_MultirateNonsplit(173,6828
-static PetscErrorCode TSCopyDM(197,8070
-static PetscErrorCode TSReset_RK_MultirateSplit(212,8467
-static PetscErrorCode TSInterpolate_RK_MultirateSplit(232,8997
-static PetscErrorCode TSEvaluateStep_RK_MultirateSplit(280,10670
-static PetscErrorCode TSStepRefine_RK_MultirateSplit(305,11654
-static PetscErrorCode TSStep_RK_MultirateSplit(364,14645
-static PetscErrorCode TSSetUp_RK_MultirateSplit(417,17052
-PetscErrorCode TSRKSetMultirate_RK(478,19899
-PetscErrorCode TSRKGetMultirate_RK(501,21095
-
src/ts/impls/explicit/rk/makefile,84
makefile:^?makefile^A,1
SOURCEC 3,37
@@ -12331,42 +12331,42 @@
PetscBool extrapolate;57,2489
TSStepStatus status;58,2586
} TS_ARKIMEX;59,2609
-PetscErrorCode TSARKIMEXRegisterAll(253,9014
-PetscErrorCode TSARKIMEXRegisterDestroy(419,25490
-PetscErrorCode TSARKIMEXInitializePackage(445,26245
-PetscErrorCode TSARKIMEXFinalizePackage(463,26784
-PetscErrorCode TSARKIMEXRegister(499,28613
-static PetscErrorCode TSEvaluateStep_ARKIMEX(567,31418
-static PetscErrorCode TSARKIMEXTestMassIdentity(629,33953
-static PetscErrorCode TSRollBack_ARKIMEX(657,35028
-static PetscErrorCode TSStep_ARKIMEX(687,35916
-static PetscErrorCode TSInterpolate_ARKIMEX(859,43610
-static PetscErrorCode TSExtrapolate_ARKIMEX(898,44971
-static PetscErrorCode TSARKIMEXTableauReset(928,46194
-static PetscErrorCode TSReset_ARKIMEX(945,46759
-static PetscErrorCode TSARKIMEXGetVecs(957,47051
-static PetscErrorCode TSARKIMEXRestoreVecs(975,47497
-static PetscErrorCode SNESTSFormFunction_ARKIMEX(991,47963
-static PetscErrorCode SNESTSFormJacobian_ARKIMEX(1012,48594
-static PetscErrorCode DMCoarsenHook_TSARKIMEX(1033,49259
-static PetscErrorCode DMRestrictHook_TSARKIMEX(1039,49389
-static PetscErrorCode DMSubDomainHook_TSARKIMEX(1054,49904
-static PetscErrorCode DMSubDomainRestrictHook_TSARKIMEX(1060,50033
-static PetscErrorCode TSARKIMEXTableauSetUp(1077,50609
-static PetscErrorCode TSSetUp_ARKIMEX(1095,51276
-static PetscErrorCode TSSetFromOptions_ARKIMEX(1114,51975
-static PetscErrorCode TSView_ARKIMEX(1142,53349
-static PetscErrorCode TSLoad_ARKIMEX(1170,54694
-PetscErrorCode TSARKIMEXSetType(1203,55817
-PetscErrorCode TSARKIMEXGetType(1227,56380
-PetscErrorCode TSARKIMEXSetFullyImplicit(1248,56992
-PetscErrorCode TSARKIMEXGetFullyImplicit(1272,57619
-static PetscErrorCode TSARKIMEXGetType_ARKIMEX(1281,57899
-static PetscErrorCode TSARKIMEXSetType_ARKIMEX(1289,58107
-static PetscErrorCode TSARKIMEXSetFullyImplicit_ARKIMEX(1313,58961
-static PetscErrorCode TSARKIMEXGetFullyImplicit_ARKIMEX(1322,59168
-static PetscErrorCode TSDestroy_ARKIMEX(1331,59377
-PETSC_EXTERN PetscErrorCode TSCreate_ARKIMEX(1370,61532
+PetscErrorCode TSARKIMEXRegisterAll(253,9015
+PetscErrorCode TSARKIMEXRegisterDestroy(419,25491
+PetscErrorCode TSARKIMEXInitializePackage(445,26246
+PetscErrorCode TSARKIMEXFinalizePackage(463,26785
+PetscErrorCode TSARKIMEXRegister(499,28614
+static PetscErrorCode TSEvaluateStep_ARKIMEX(567,31419
+static PetscErrorCode TSARKIMEXTestMassIdentity(629,33954
+static PetscErrorCode TSRollBack_ARKIMEX(657,35029
+static PetscErrorCode TSStep_ARKIMEX(687,35917
+static PetscErrorCode TSInterpolate_ARKIMEX(859,43611
+static PetscErrorCode TSExtrapolate_ARKIMEX(898,44972
+static PetscErrorCode TSARKIMEXTableauReset(928,46195
+static PetscErrorCode TSReset_ARKIMEX(945,46760
+static PetscErrorCode TSARKIMEXGetVecs(957,47052
+static PetscErrorCode TSARKIMEXRestoreVecs(975,47498
+static PetscErrorCode SNESTSFormFunction_ARKIMEX(991,47964
+static PetscErrorCode SNESTSFormJacobian_ARKIMEX(1012,48595
+static PetscErrorCode DMCoarsenHook_TSARKIMEX(1033,49260
+static PetscErrorCode DMRestrictHook_TSARKIMEX(1039,49390
+static PetscErrorCode DMSubDomainHook_TSARKIMEX(1054,49905
+static PetscErrorCode DMSubDomainRestrictHook_TSARKIMEX(1060,50034
+static PetscErrorCode TSARKIMEXTableauSetUp(1077,50610
+static PetscErrorCode TSSetUp_ARKIMEX(1095,51277
+static PetscErrorCode TSSetFromOptions_ARKIMEX(1114,51976
+static PetscErrorCode TSView_ARKIMEX(1142,53350
+static PetscErrorCode TSLoad_ARKIMEX(1170,54695
+PetscErrorCode TSARKIMEXSetType(1203,55818
+PetscErrorCode TSARKIMEXGetType(1227,56381
+PetscErrorCode TSARKIMEXSetFullyImplicit(1248,56993
+PetscErrorCode TSARKIMEXGetFullyImplicit(1272,57620
+static PetscErrorCode TSARKIMEXGetType_ARKIMEX(1281,57900
+static PetscErrorCode TSARKIMEXSetType_ARKIMEX(1289,58108
+static PetscErrorCode TSARKIMEXSetFullyImplicit_ARKIMEX(1313,58962
+static PetscErrorCode TSARKIMEXGetFullyImplicit_ARKIMEX(1322,59169
+static PetscErrorCode TSDestroy_ARKIMEX(1331,59378
+PETSC_EXTERN PetscErrorCode TSCreate_ARKIMEX(1370,61533
src/ts/impls/arkimex/makefile,83
makefile:^?makefile^A,1
@@ -12653,9 +12653,9 @@
static inline PetscReal TSEventComputeStepSize(350,13166
static PetscErrorCode TSEventDetection(369,14046
static PetscErrorCode TSEventLocation(403,15723
-PetscErrorCode TSEventHandler(473,18709
-PetscErrorCode TSAdjointEventHandler(560,21969
-PetscErrorCode TSGetNumEvents(604,23058
+PetscErrorCode TSEventHandler(473,18710
+PetscErrorCode TSAdjointEventHandler(560,21970
+PetscErrorCode TSGetNumEvents(604,23059
src/ts/event/makefile,83
makefile:^?makefile^A,1
@@ -12803,10 +12803,10 @@
PetscErrorCode TSAdaptCandidatesClear(755,28036
PetscErrorCode TSAdaptCandidateAdd(784,29092
PetscErrorCode TSAdaptCandidatesGet(829,30821
-PetscErrorCode TSAdaptChoose(864,32053
-PetscErrorCode TSAdaptSetTimeStepIncreaseDelay(957,36729
-PetscErrorCode TSAdaptCheckStage(982,37374
-PetscErrorCode TSAdaptCreate(1053,40764
+PetscErrorCode TSAdaptChoose(864,32054
+PetscErrorCode TSAdaptSetTimeStepIncreaseDelay(957,36730
+PetscErrorCode TSAdaptCheckStage(982,37375
+PetscErrorCode TSAdaptCreate(1053,40765
src/ts/adapt/interface/makefile,83
makefile:^?makefile^A,1
@@ -13460,6 +13460,28 @@
MANSEC 7,109
LOCDIR 8,124
+src/tao/unconstrained/impls/nls/nls.c,747
+nls.c:^?nls.c^A,1
+#define NLS_INIT_CONSTANT 6,112
+#define NLS_INIT_DIRECTION 7,145
+#define NLS_INIT_INTERPOLATION 8,178
+#define NLS_INIT_TYPES 9,211
+#define NLS_UPDATE_STEP 11,245
+#define NLS_UPDATE_REDUCTION 12,280
+#define NLS_UPDATE_INTERPOLATION 13,315
+#define NLS_UPDATE_TYPES 14,350
+static const char *NLS_INIT[NLS_INIT16,386
+static const char *NLS_UPDATE[NLS_UPDATE18,465
+#define NLS_NEWTON 34,1014
+#define NLS_BFGS 35,1037
+#define NLS_GRADIENT 36,1060
+static PetscErrorCode TaoSolve_NLS(38,1084
+static PetscErrorCode TaoSetUp_NLS(695,27769
+static PetscErrorCode TaoDestroy_NLS(712,28464
+static PetscErrorCode TaoSetFromOptions_NLS(729,28924
+static PetscErrorCode TaoView_NLS(789,34465
+PETSC_EXTERN PetscErrorCode TaoCreate_NLS(869,38126
+
src/tao/unconstrained/impls/nls/nlsimpl.h,1768
nlsimpl.h:^?nlsimpl.h^A,1
#define __TAO_NLS_H6,96
@@ -13528,28 +13550,6 @@
PetscInt ksp_othr;172,6119
} TAO_NLS;173,6140
-src/tao/unconstrained/impls/nls/nls.c,747
-nls.c:^?nls.c^A,1
-#define NLS_INIT_CONSTANT 6,112
-#define NLS_INIT_DIRECTION 7,145
-#define NLS_INIT_INTERPOLATION 8,178
-#define NLS_INIT_TYPES 9,211
-#define NLS_UPDATE_STEP 11,245
-#define NLS_UPDATE_REDUCTION 12,280
-#define NLS_UPDATE_INTERPOLATION 13,315
-#define NLS_UPDATE_TYPES 14,350
-static const char *NLS_INIT[NLS_INIT16,386
-static const char *NLS_UPDATE[NLS_UPDATE18,465
-#define NLS_NEWTON 34,1014
-#define NLS_BFGS 35,1037
-#define NLS_GRADIENT 36,1060
-static PetscErrorCode TaoSolve_NLS(38,1084
-static PetscErrorCode TaoSetUp_NLS(695,27769
-static PetscErrorCode TaoDestroy_NLS(712,28464
-static PetscErrorCode TaoSetFromOptions_NLS(729,28924
-static PetscErrorCode TaoView_NLS(789,34465
-PETSC_EXTERN PetscErrorCode TaoCreate_NLS(869,38127
-
src/tao/unconstrained/impls/nls/makefile,84
makefile:^?makefile^A,1
SOURCEC 3,37
@@ -13933,15 +13933,6 @@
DIRS 3,34
LOCDIR 4,56
-src/tao/quadratic/impls/gpcg/makefile,84
-makefile:^?makefile^A,1
-SOURCEC 3,37
-SOURCEF 4,55
-SOURCEH 5,66
-LIBBASE 6,84
-MANSEC 7,107
-LOCDIR 8,122
-
src/tao/quadratic/impls/gpcg/gpcg.h,1052
gpcg.h:^?gpcg.h^A,1
#define __TAO_GPCG_H2,21
@@ -13983,9 +13974,18 @@
PetscInt n_upper;53,976
PetscInt n_lower;54,996
PetscInt n_bind;55,1016
- PetscInt ksp_type;56,1068
- PetscInt subset_type;57,1089
-} TAO_GPCG;58,1113
+ PetscInt ksp_type;56,1069
+ PetscInt subset_type;57,1090
+} TAO_GPCG;58,1114
+
+src/tao/quadratic/impls/gpcg/makefile,84
+makefile:^?makefile^A,1
+SOURCEC 3,37
+SOURCEF 4,55
+SOURCEH 5,66
+LIBBASE 6,84
+MANSEC 7,107
+LOCDIR 8,122
src/tao/quadratic/impls/gpcg/gpcg.c,449
gpcg.c:^?gpcg.c^A,1
@@ -14837,6 +14837,28 @@
DIRS 5,66
LOCDIR 6,99
+src/tao/leastsquares/tutorials/cs1.c,556
+cs1.c:^?cs1.c^A,1
+static char help[help22,652
+#define M 27,1109
+#define N 28,1121
+#define K 29,1133
+ PetscReal A[A34,1262
+ PetscReal b[b35,1311
+ PetscReal xGT[xGT36,1360
+ PetscReal D[D37,1472
+ PetscReal J[J38,1559
+ PetscInt idm[idm39,1698
+ PetscInt idn[idn40,1780
+ PetscInt idk[idk41,1800
+} AppCtx;42,1820
+int main(52,2187
+PetscErrorCode EvaluateFunction(128,4880
+PetscErrorCode EvaluateJacobian(152,5671
+PetscErrorCode FormDictionaryMatrix(177,6923
+PetscErrorCode FormStartingPoint(189,7392
+PetscErrorCode InitializeUserData(197,7591
+
src/tao/leastsquares/tutorials/tomography.c,650
tomography.c:^?tomography.c^A,1
static char help[help23,717
@@ -14867,28 +14889,6 @@
DIRS 6,101
CLEANFILES 7,117
-src/tao/leastsquares/tutorials/cs1.c,556
-cs1.c:^?cs1.c^A,1
-static char help[help22,652
-#define M 27,1109
-#define N 28,1121
-#define K 29,1133
- PetscReal A[A34,1262
- PetscReal b[b35,1311
- PetscReal xGT[xGT36,1360
- PetscReal D[D37,1472
- PetscReal J[J38,1559
- PetscInt idm[idm39,1698
- PetscInt idn[idn40,1780
- PetscInt idk[idk41,1800
-} AppCtx;42,1820
-int main(52,2187
-PetscErrorCode EvaluateFunction(128,4880
-PetscErrorCode EvaluateJacobian(152,5671
-PetscErrorCode FormDictionaryMatrix(177,6923
-PetscErrorCode FormStartingPoint(189,7392
-PetscErrorCode InitializeUserData(197,7591
-
src/tao/leastsquares/tutorials/chwirut2f.F90,248
chwirut2f.F90:^?chwirut2f.F90^A,1
subroutine FormFunction(110,3268
@@ -15199,6 +15199,114 @@
PETSC_EXTERN void taobrgnsetregularizerobjectiveandgradientroutine_(28,1121
PETSC_EXTERN void taobrgnsetregularizerhessianroutine_(35,1588
+src/tao/interface/taosolver_bounds.c,711
+taosolver_bounds.c:^?taosolver_bounds.c^A,1
+PetscErrorCode TaoSetVariableBounds(17,416
+PetscErrorCode TaoSetVariableBoundsRoutine(59,1749
+PetscErrorCode TaoGetVariableBounds(85,2476
+PetscErrorCode TaoComputeVariableBounds(108,2978
+PetscErrorCode TaoSetInequalityBounds(140,3886
+PetscErrorCode TaoGetInequalityBounds(172,4829
+PetscErrorCode TaoComputeConstraints(195,5323
+PetscErrorCode TaoSetConstraintsRoutine(234,6732
+PetscErrorCode TaoComputeDualVariables(272,7836
+PetscErrorCode TaoGetDualVariables(305,8629
+PetscErrorCode TaoSetEqualityConstraintsRoutine(338,9705
+PetscErrorCode TaoSetInequalityConstraintsRoutine(376,11175
+PetscErrorCode TaoComputeEqualityConstraints(408,12265
+PetscErrorCode TaoComputeInequalityConstraints(441,13391
+
+src/tao/interface/taosolver.c,4042
+taosolver.c:^?taosolver.c^A,1
+PetscBool TaoRegisterAllCalled 4,93
+PetscFunctionList TaoList 5,147
+PetscClassId TAO_CLASSID;7,195
+PetscLogEvent TAO_Solve;9,222
+PetscLogEvent TAO_ObjectiveEval;10,247
+PetscLogEvent TAO_GradientEval;11,280
+PetscLogEvent TAO_ObjGradEval;12,312
+PetscLogEvent TAO_HessianEval;13,343
+PetscLogEvent TAO_JacobianEval;14,374
+PetscLogEvent TAO_ConstraintsEval;15,406
+const char *TaoSubSetTypes[TaoSubSetTypes17,442
+struct _n_TaoMonitorDrawCtx 19,546
+ PetscViewer viewer;20,576
+ PetscInt howoften;21,598
+static PetscErrorCode KSPPreSolve_TAOEW_Private(24,710
+static PetscErrorCode KSPPostSolve_TAOEW_Private(40,1254
+static PetscErrorCode TaoSetUpEW_Private(50,1534
+PetscErrorCode TaoCreate(101,3740
+PetscErrorCode TaoSolve(157,5262
+PetscErrorCode TaoSetUp(217,7870
+PetscErrorCode TaoDestroy(241,8484
+PetscErrorCode TaoKSPSetUseEW(328,11629
+PetscErrorCode TaoSetFromOptions(381,13969
+PetscErrorCode TaoViewFromOptions(562,23949
+PetscErrorCode TaoView(594,24813
+PetscErrorCode TaoSetRecycleHistory(760,32276
+PetscErrorCode TaoGetRecycleHistory(785,32920
+PetscErrorCode TaoSetTolerances(824,33895
+PetscErrorCode TaoSetConstraintTolerances(882,35659
+PetscErrorCode TaoGetConstraintTolerances(926,36982
+PetscErrorCode TaoSetFunctionLowerBound(953,37685
+PetscErrorCode TaoGetFunctionLowerBound(980,38365
+PetscErrorCode TaoSetMaximumFunctionEvaluations(1007,39012
+PetscErrorCode TaoGetMaximumFunctionEvaluations(1038,39725
+PetscErrorCode TaoGetCurrentFunctionEvaluations(1064,40395
+PetscErrorCode TaoSetMaximumIterations(1089,41043
+PetscErrorCode TaoGetMaximumIterations(1114,41670
+PetscErrorCode TaoSetInitialTrustRegionRadius(1139,42284
+PetscErrorCode TaoGetInitialTrustRegionRadius(1164,42924
+PetscErrorCode TaoGetCurrentTrustRegionRadius(1188,43492
+PetscErrorCode TaoGetTolerances(1217,44202
+PetscErrorCode TaoGetKSP(1244,44880
+PetscErrorCode TaoGetLinearSolveIterations(1272,45444
+PetscErrorCode TaoGetLineSearch(1297,46038
+PetscErrorCode TaoAddLineSearchCounts(1318,46556
+PetscErrorCode TaoGetSolution(1355,47434
+PetscErrorCode TaoResetStatistics(1378,48018
+PetscErrorCode TaoSetUpdate(1421,49157
+PetscErrorCode TaoSetConvergenceTest(1457,50201
+PetscErrorCode TaoSetMonitor(1508,51962
+PetscErrorCode TaoCancelMonitors(1548,53364
+PetscErrorCode TaoMonitorDefault(1580,54201
+PetscErrorCode TaoDefaultGMonitor(1631,56052
+PetscErrorCode TaoDefaultSMonitor(1685,58041
+PetscErrorCode TaoDefaultCMonitor(1732,59601
+PetscErrorCode TaoSolutionMonitor(1772,60880
+PetscErrorCode TaoGradientMonitor(1801,61599
+PetscErrorCode TaoStepDirectionMonitor(1828,62245
+PetscErrorCode TaoDrawSolutionMonitor(1857,63017
+PetscErrorCode TaoDrawGradientMonitor(1886,63853
+PetscErrorCode TaoDrawStepMonitor(1913,64583
+PetscErrorCode TaoResidualMonitor(1940,65254
+PetscErrorCode TaoDefaultConvergenceTest(1975,66190
+PetscErrorCode TaoSetOptionsPrefix(2056,69745
+PetscErrorCode TaoAppendOptionsPrefix(2084,70640
+PetscErrorCode TaoGetOptionsPrefix(2114,71514
+PetscErrorCode TaoSetType(2153,73173
+PetscErrorCode TaoRegister(2213,74951
+PetscErrorCode TaoRegisterDestroy(2231,75407
+PetscErrorCode TaoGetIterationNumber(2258,75998
+PetscErrorCode TaoGetResidualNorm(2287,76751
+PetscErrorCode TaoSetIterationNumber(2309,77211
+PetscErrorCode TaoGetTotalIterationNumber(2341,78085
+PetscErrorCode TaoSetTotalIterationNumber(2363,78560
+PetscErrorCode TaoSetConvergedReason(2401,79501
+PetscErrorCode TaoGetConvergedReason(2451,81043
+PetscErrorCode TaoGetSolutionStatus(2486,82174
+PetscErrorCode TaoGetType(2514,82866
+PetscErrorCode TaoMonitor(2547,84086
+PetscErrorCode TaoSetConvergenceHistory(2599,86110
+PetscErrorCode TaoGetConvergenceHistory(2657,87947
+PetscErrorCode TaoSetApplicationContext(2683,88671
+PetscErrorCode TaoGetApplicationContext(2707,89115
+PetscErrorCode TaoSetGradientNorm(2729,89634
+PetscErrorCode TaoGetGradientNorm(2757,90375
+PetscErrorCode TaoGradientNorm(2783,90949
+PetscErrorCode TaoMonitorDrawCtxCreate(2818,92145
+PetscErrorCode TaoMonitorDrawCtxDestroy(2840,92843
+
src/tao/interface/taosolver_hj.c,836
taosolver_hj.c:^?taosolver_hj.c^A,1
PetscErrorCode TaoSetHessian(29,922
@@ -15239,114 +15347,6 @@
PetscErrorCode TaoIsGradientDefined(641,22594
PetscErrorCode TaoIsObjectiveAndGradientDefined(668,23366
-src/tao/interface/taosolver_bounds.c,711
-taosolver_bounds.c:^?taosolver_bounds.c^A,1
-PetscErrorCode TaoSetVariableBounds(17,416
-PetscErrorCode TaoSetVariableBoundsRoutine(59,1749
-PetscErrorCode TaoGetVariableBounds(85,2476
-PetscErrorCode TaoComputeVariableBounds(108,2978
-PetscErrorCode TaoSetInequalityBounds(140,3886
-PetscErrorCode TaoGetInequalityBounds(172,4829
-PetscErrorCode TaoComputeConstraints(195,5323
-PetscErrorCode TaoSetConstraintsRoutine(234,6732
-PetscErrorCode TaoComputeDualVariables(272,7836
-PetscErrorCode TaoGetDualVariables(305,8629
-PetscErrorCode TaoSetEqualityConstraintsRoutine(338,9705
-PetscErrorCode TaoSetInequalityConstraintsRoutine(376,11175
-PetscErrorCode TaoComputeEqualityConstraints(408,12264
-PetscErrorCode TaoComputeInequalityConstraints(441,13389
-
-src/tao/interface/taosolver.c,4042
-taosolver.c:^?taosolver.c^A,1
-PetscBool TaoRegisterAllCalled 4,93
-PetscFunctionList TaoList 5,147
-PetscClassId TAO_CLASSID;7,195
-PetscLogEvent TAO_Solve;9,222
-PetscLogEvent TAO_ObjectiveEval;10,247
-PetscLogEvent TAO_GradientEval;11,280
-PetscLogEvent TAO_ObjGradEval;12,312
-PetscLogEvent TAO_HessianEval;13,343
-PetscLogEvent TAO_JacobianEval;14,374
-PetscLogEvent TAO_ConstraintsEval;15,406
-const char *TaoSubSetTypes[TaoSubSetTypes17,442
-struct _n_TaoMonitorDrawCtx 19,546
- PetscViewer viewer;20,576
- PetscInt howoften;21,598
-static PetscErrorCode KSPPreSolve_TAOEW_Private(24,710
-static PetscErrorCode KSPPostSolve_TAOEW_Private(40,1254
-static PetscErrorCode TaoSetUpEW_Private(50,1534
-PetscErrorCode TaoCreate(101,3740
-PetscErrorCode TaoSolve(157,5260
-PetscErrorCode TaoSetUp(217,7868
-PetscErrorCode TaoDestroy(241,8482
-PetscErrorCode TaoKSPSetUseEW(328,11627
-PetscErrorCode TaoSetFromOptions(381,13968
-PetscErrorCode TaoViewFromOptions(561,23947
-PetscErrorCode TaoView(593,24811
-PetscErrorCode TaoSetRecycleHistory(759,32266
-PetscErrorCode TaoGetRecycleHistory(785,32911
-PetscErrorCode TaoSetTolerances(823,33878
-PetscErrorCode TaoSetConstraintTolerances(882,35637
-PetscErrorCode TaoGetConstraintTolerances(926,36955
-PetscErrorCode TaoSetFunctionLowerBound(953,37658
-PetscErrorCode TaoGetFunctionLowerBound(980,38338
-PetscErrorCode TaoSetMaximumFunctionEvaluations(1007,38985
-PetscErrorCode TaoGetMaximumFunctionEvaluations(1038,39698
-PetscErrorCode TaoGetCurrentFunctionEvaluations(1064,40368
-PetscErrorCode TaoSetMaximumIterations(1089,41016
-PetscErrorCode TaoGetMaximumIterations(1114,41643
-PetscErrorCode TaoSetInitialTrustRegionRadius(1139,42257
-PetscErrorCode TaoGetInitialTrustRegionRadius(1164,42897
-PetscErrorCode TaoGetCurrentTrustRegionRadius(1188,43465
-PetscErrorCode TaoGetTolerances(1217,44175
-PetscErrorCode TaoGetKSP(1244,44853
-PetscErrorCode TaoGetLinearSolveIterations(1272,45417
-PetscErrorCode TaoGetLineSearch(1297,46011
-PetscErrorCode TaoAddLineSearchCounts(1318,46529
-PetscErrorCode TaoGetSolution(1355,47407
-PetscErrorCode TaoResetStatistics(1378,47991
-PetscErrorCode TaoSetUpdate(1421,49130
-PetscErrorCode TaoSetConvergenceTest(1457,50174
-PetscErrorCode TaoSetMonitor(1508,51935
-PetscErrorCode TaoCancelMonitors(1548,53337
-PetscErrorCode TaoMonitorDefault(1580,54174
-PetscErrorCode TaoDefaultGMonitor(1631,56025
-PetscErrorCode TaoDefaultSMonitor(1685,58014
-PetscErrorCode TaoDefaultCMonitor(1732,59574
-PetscErrorCode TaoSolutionMonitor(1772,60853
-PetscErrorCode TaoGradientMonitor(1801,61572
-PetscErrorCode TaoStepDirectionMonitor(1828,62218
-PetscErrorCode TaoDrawSolutionMonitor(1857,62990
-PetscErrorCode TaoDrawGradientMonitor(1886,63826
-PetscErrorCode TaoDrawStepMonitor(1913,64556
-PetscErrorCode TaoResidualMonitor(1940,65227
-PetscErrorCode TaoDefaultConvergenceTest(1975,66163
-PetscErrorCode TaoSetOptionsPrefix(2056,69718
-PetscErrorCode TaoAppendOptionsPrefix(2084,70613
-PetscErrorCode TaoGetOptionsPrefix(2114,71487
-PetscErrorCode TaoSetType(2153,73146
-PetscErrorCode TaoRegister(2213,74924
-PetscErrorCode TaoRegisterDestroy(2231,75373
-PetscErrorCode TaoGetIterationNumber(2258,75957
-PetscErrorCode TaoGetResidualNorm(2286,76716
-PetscErrorCode TaoSetIterationNumber(2308,77169
-PetscErrorCode TaoGetTotalIterationNumber(2340,78034
-PetscErrorCode TaoSetTotalIterationNumber(2362,78502
-PetscErrorCode TaoSetConvergedReason(2397,79455
-PetscErrorCode TaoGetConvergedReason(2446,81029
-PetscErrorCode TaoGetSolutionStatus(2481,82158
-PetscErrorCode TaoGetType(2509,82850
-PetscErrorCode TaoMonitor(2542,84070
-PetscErrorCode TaoSetConvergenceHistory(2595,86081
-PetscErrorCode TaoGetConvergenceHistory(2651,87916
-PetscErrorCode TaoSetApplicationContext(2677,88640
-PetscErrorCode TaoGetApplicationContext(2701,89084
-PetscErrorCode TaoSetGradientNorm(2723,89603
-PetscErrorCode TaoGetGradientNorm(2751,90344
-PetscErrorCode TaoGradientNorm(2777,90918
-PetscErrorCode TaoMonitorDrawCtxCreate(2812,92114
-PetscErrorCode TaoMonitorDrawCtxDestroy(2834,92812
-
src/tao/interface/fdiff.c,244
fdiff.c:^?fdiff.c^A,1
static PetscErrorCode Fsnes(9,233
@@ -15493,7 +15493,7 @@
subroutine TaoLineSearchSetInitialStepLength(104,3697
subroutine TaoLineSearchGetStepLength(109,3905
-src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90,4542
+src/tao/f90-mod/ftn-auto-interfaces/petsctao.h90,4545
petsctao.h90:^?petsctao.h90^A,1
subroutine TaoLMVMRecycle(1,0
subroutine TaoLMVMSetH0(6,150
@@ -15524,61 +15524,61 @@
subroutine TaoALMMSetMultipliers(139,4398
subroutine TaoALMMGetPrimalIS(145,4569
subroutine TaoALMMGetDualIS(152,4750
- subroutine TaoCreate(159,4927
- subroutine TaoSolve(164,5065
- subroutine TaoSetUp(168,5170
- subroutine TaoKSPSetUseEW(172,5275
- subroutine TaoSetFromOptions(177,5425
- subroutine TaoSetRecycleHistory(181,5548
- subroutine TaoGetRecycleHistory(186,5710
- subroutine TaoSetTolerances(191,5872
- subroutine TaoSetConstraintTolerances(198,6092
- subroutine TaoGetConstraintTolerances(204,6299
- subroutine TaoSetFunctionLowerBound(210,6506
- subroutine TaoGetFunctionLowerBound(215,6676
- subroutine TaoSetMaximumFunctionEvaluations(220,6846
- subroutine TaoGetMaximumFunctionEvaluations(225,7030
- subroutine TaoGetCurrentFunctionEvaluations(230,7214
- subroutine TaoSetMaximumIterations(235,7398
- subroutine TaoGetMaximumIterations(240,7564
- subroutine TaoSetInitialTrustRegionRadius(245,7730
- subroutine TaoGetInitialTrustRegionRadius(250,7912
- subroutine TaoGetCurrentTrustRegionRadius(255,8094
- subroutine TaoGetTolerances(260,8276
- subroutine TaoGetKSP(267,8496
- subroutine TaoGetLinearSolveIterations(273,8643
- subroutine TaoGetLineSearch(278,8817
- subroutine TaoAddLineSearchCounts(283,8979
- subroutine TaoGetSolution(287,9112
- subroutine TaoResetStatistics(293,9269
- subroutine TaoCancelMonitors(297,9394
- subroutine TaoGetIterationNumber(301,9517
- subroutine TaoGetResidualNorm(306,9679
- subroutine TaoSetIterationNumber(311,9837
- subroutine TaoGetTotalIterationNumber(316,9999
- subroutine TaoSetTotalIterationNumber(321,10171
- subroutine TaoSetConvergedReason(326,10343
- subroutine TaoGetConvergedReason(331,10525
- subroutine TaoGetSolutionStatus(336,10707
- subroutine TaoSetConvergenceHistory(346,11050
- subroutine TaoSetGradientNorm(356,11397
- subroutine TaoGetGradientNorm(362,11562
- subroutine TaoSetVariableBounds(368,11727
- subroutine TaoGetVariableBounds(375,11917
- subroutine TaoSetInequalityBounds(382,12107
- subroutine TaoGetInequalityBounds(389,12301
- subroutine TaoComputeDualVariables(396,12495
- subroutine TaoGetDualVariables(403,12691
- subroutine TaoSetSolution(410,12879
- subroutine TaoComputeGradient(416,13036
- subroutine TaoComputeObjective(423,13222
- subroutine TaoComputeObjectiveAndGradient(430,13422
- subroutine TaoSetResidualWeights(438,13665
- subroutine TaoComputeResidual(448,13962
- subroutine TaoIsObjectiveDefined(455,14148
- subroutine TaoIsGradientDefined(460,14312
- subroutine TaoIsObjectiveAndGradientDefined(465,14474
- subroutine TaoSetStateDesignIS(470,14660
+ subroutine TaoSetSolution(159,4927
+ subroutine TaoComputeGradient(165,5084
+ subroutine TaoComputeObjective(172,5270
+ subroutine TaoComputeObjectiveAndGradient(179,5470
+ subroutine TaoSetResidualWeights(187,5713
+ subroutine TaoComputeResidual(197,6010
+ subroutine TaoIsObjectiveDefined(204,6196
+ subroutine TaoIsGradientDefined(209,6360
+ subroutine TaoIsObjectiveAndGradientDefined(214,6522
+ subroutine TaoSetStateDesignIS(219,6708
+ subroutine TaoCreate(226,6891
+ subroutine TaoSolve(231,7029
+ subroutine TaoSetUp(235,7134
+ subroutine TaoKSPSetUseEW(239,7239
+ subroutine TaoSetFromOptions(244,7389
+ subroutine TaoSetRecycleHistory(248,7512
+ subroutine TaoGetRecycleHistory(253,7674
+ subroutine TaoSetTolerances(258,7836
+ subroutine TaoSetConstraintTolerances(265,8056
+ subroutine TaoGetConstraintTolerances(271,8263
+ subroutine TaoSetFunctionLowerBound(277,8470
+ subroutine TaoGetFunctionLowerBound(282,8640
+ subroutine TaoSetMaximumFunctionEvaluations(287,8810
+ subroutine TaoGetMaximumFunctionEvaluations(292,8994
+ subroutine TaoGetCurrentFunctionEvaluations(297,9178
+ subroutine TaoSetMaximumIterations(302,9362
+ subroutine TaoGetMaximumIterations(307,9528
+ subroutine TaoSetInitialTrustRegionRadius(312,9694
+ subroutine TaoGetInitialTrustRegionRadius(317,9876
+ subroutine TaoGetCurrentTrustRegionRadius(322,10058
+ subroutine TaoGetTolerances(327,10240
+ subroutine TaoGetKSP(334,10460
+ subroutine TaoGetLinearSolveIterations(340,10607
+ subroutine TaoGetLineSearch(345,10781
+ subroutine TaoAddLineSearchCounts(350,10943
+ subroutine TaoGetSolution(354,11076
+ subroutine TaoResetStatistics(360,11233
+ subroutine TaoCancelMonitors(364,11358
+ subroutine TaoGetIterationNumber(368,11481
+ subroutine TaoGetResidualNorm(373,11643
+ subroutine TaoSetIterationNumber(378,11801
+ subroutine TaoGetTotalIterationNumber(383,11963
+ subroutine TaoSetTotalIterationNumber(388,12135
+ subroutine TaoSetConvergedReason(393,12307
+ subroutine TaoGetConvergedReason(398,12489
+ subroutine TaoGetSolutionStatus(403,12671
+ subroutine TaoSetConvergenceHistory(413,13014
+ subroutine TaoSetGradientNorm(423,13361
+ subroutine TaoGetGradientNorm(429,13526
+ subroutine TaoSetVariableBounds(435,13691
+ subroutine TaoGetVariableBounds(442,13881
+ subroutine TaoSetInequalityBounds(449,14071
+ subroutine TaoGetInequalityBounds(456,14265
+ subroutine TaoComputeDualVariables(463,14459
+ subroutine TaoGetDualVariables(470,14655
subroutine TaoBRGNGetSubsolver(477,14843
subroutine TaoBRGNSetRegularizerWeight(482,14991
subroutine TaoBRGNSetL1SmoothEpsilon(487,15167
@@ -15598,33 +15598,33 @@
src/tao/constrained/tutorials/ex1.c,953
ex1.c:^?ex1.c^A,1
static char help[help20,510
- PetscInt n;35,1342
- PetscInt ne;36,1384
- PetscInt ni;37,1445
- PetscBool noeqflag,38,1508
- PetscBool noeqflag, initview;38,1508
- Vec x,39,1541
- Vec x, xl,39,1541
- Vec x, xl, xu;39,1541
- Vec ce,40,1565
- Vec ce, ci,40,1565
- Vec ce, ci, bl,40,1565
- Vec ce, ci, bl, bu,40,1565
- Vec ce, ci, bl, bu, Xseq;40,1565
- Mat Ae,41,1600
- Mat Ae, Ai,41,1600
- Mat Ae, Ai, H;41,1600
- VecScatter scat;42,1624
-} AppCtx;43,1643
-PetscErrorCode main(55,2176
-PetscErrorCode InitializeProblem(155,6817
-PetscErrorCode DestroyProblem(230,9533
-PetscErrorCode FormFunctionGradient(252,10171
-PetscErrorCode FormHessian(291,11484
-PetscErrorCode FormInequalityConstraints(349,13574
-PetscErrorCode FormEqualityConstraints(382,14577
-PetscErrorCode FormInequalityJacobian(414,15509
-PetscErrorCode FormEqualityJacobian(452,16706
+ PetscInt n;35,1343
+ PetscInt ne;36,1385
+ PetscInt ni;37,1446
+ PetscBool noeqflag,38,1509
+ PetscBool noeqflag, initview;38,1509
+ Vec x,39,1542
+ Vec x, xl,39,1542
+ Vec x, xl, xu;39,1542
+ Vec ce,40,1566
+ Vec ce, ci,40,1566
+ Vec ce, ci, bl,40,1566
+ Vec ce, ci, bl, bu,40,1566
+ Vec ce, ci, bl, bu, Xseq;40,1566
+ Mat Ae,41,1601
+ Mat Ae, Ai,41,1601
+ Mat Ae, Ai, H;41,1601
+ VecScatter scat;42,1625
+} AppCtx;43,1644
+PetscErrorCode main(55,2177
+PetscErrorCode InitializeProblem(155,6818
+PetscErrorCode DestroyProblem(230,9534
+PetscErrorCode FormFunctionGradient(252,10172
+PetscErrorCode FormHessian(291,11485
+PetscErrorCode FormInequalityConstraints(349,13575
+PetscErrorCode FormEqualityConstraints(382,14578
+PetscErrorCode FormInequalityJacobian(414,15510
+PetscErrorCode FormEqualityJacobian(452,16707
src/tao/constrained/tutorials/tomographyADMM.c,1554
tomographyADMM.c:^?tomographyADMM.c^A,1
@@ -17540,11 +17540,6 @@
boxobtainrefreshtoken.c:^?boxobtainrefreshtoken.c^A,1
int main(11,234
-src/sys/utils/memc.c,85
-memc.c:^?memc.c^A,1
-PetscErrorCode PetscMemcmp(36,984
-PetscErrorCode PetscProcessPlacementView(67,1762
-
src/sys/utils/str.c,1675
str.c:^?str.c^A,1
PetscErrorCode PetscStrToArray(40,1106
@@ -17586,8 +17581,74 @@
PetscErrorCode PetscStrreplace(1155,26709
PetscErrorCode PetscEListFind(1263,30495
PetscErrorCode PetscEnumFind(1303,31476
-const char *PetscCIFilename(PetscCIFilename1355,33817
-int PetscCILinenumber(1376,34260
+const char *PetscCIFilename(PetscCIFilename1355,33816
+int PetscCILinenumber(1376,34259
+
+src/sys/utils/sorti.c,1728
+sorti.c:^?sorti.c^A,1
+#define MEDIAN3(9,240
+#define MEDIAN(11,383
+#define SWAP1(14,525
+#define SWAP2(20,617
+#define SWAP3(29,762
+#define SWAP2Data(43,1034
+#define TwoWayPartition1(69,1759
+#define TwoWayPartitionReverse1(102,2569
+#define TwoWayPartition2(119,2898
+#define TwoWayPartition3(136,3243
+#define QuickSort1(154,3660
+#define QuickSortReverse1(177,4287
+#define QuickSort2(199,4879
+#define QuickSort3(221,5497
+PetscErrorCode PetscSortedInt(259,6490
+PetscErrorCode PetscSortedInt64(284,7086
+PetscErrorCode PetscSortInt(311,7913
+PetscErrorCode PetscSortInt64(337,8447
+PetscErrorCode PetscSortCount(363,8987
+PetscErrorCode PetscSortReverseInt(386,9505
+PetscErrorCode PetscSortedRemoveDupsInt(412,10046
+PetscErrorCode PetscSortedCheckDupsInt(445,10796
+PetscErrorCode PetscSortRemoveDupsInt(477,11546
+PetscErrorCode PetscFindInt(503,12236
+PetscErrorCode PetscCheckDupsInt(540,13074
+PetscErrorCode PetscFindMPIInt(582,14138
+PetscErrorCode PetscSortIntWithArray(618,15108
+PetscErrorCode PetscSortIntWithArrayPair(643,15892
+PetscErrorCode PetscSortIntWithCountArray(667,16632
+PetscErrorCode PetscSortIntWithIntCountArrayPair(696,17634
+PetscErrorCode PetscSortedMPIInt(722,18382
+PetscErrorCode PetscSortMPIInt(747,19146
+PetscErrorCode PetscSortRemoveDupsMPIInt(772,19719
+PetscErrorCode PetscSortMPIIntWithArray(803,20509
+PetscErrorCode PetscSortMPIIntWithIntArray(830,21285
+PetscErrorCode PetscSortIntWithScalarArray(855,21997
+PetscErrorCode PetscSortIntWithDataArray(883,22935
+PetscErrorCode PetscMergeIntArray(940,24490
+PetscErrorCode PetscMergeIntArrayPair(1005,26380
+PetscErrorCode PetscMergeMPIIntArray(1063,27973
+PetscErrorCode PetscProcessTree(1106,29262
+PetscErrorCode PetscParallelSortedInt(1202,32351
+
+src/sys/utils/psplit.c,142
+psplit.c:^?psplit.c^A,1
+PetscErrorCode PetscSplitOwnershipBlock(27,776
+PetscErrorCode PetscSplitOwnership(68,2280
+PetscErrorCode PetscSplitOwnershipEqual(127,5165
+
+src/sys/utils/mpimesg.c,365
+mpimesg.c:^?mpimesg.c^A,1
+PetscErrorCode PetscGatherNumberOfMessages(32,1019
+PetscErrorCode PetscGatherMessageLengths(89,3104
+PetscErrorCode PetscGatherNumberOfMessages_Private(138,5196
+PetscErrorCode PetscGatherMessageLengths_Private(167,6363
+PetscErrorCode PetscGatherMessageLengths2(238,9093
+PetscErrorCode PetscPostIrecvInt(292,11239
+PetscErrorCode PetscPostIrecvScalar(315,12121
+
+src/sys/utils/memc.c,85
+memc.c:^?memc.c^A,1
+PetscErrorCode PetscMemcmp(36,984
+PetscErrorCode PetscProcessPlacementView(67,1762
src/sys/utils/mpiu.c,367
mpiu.c:^?mpiu.c^A,1
@@ -17680,51 +17741,6 @@
static PetscErrorCode PetscSortStrWithPermutation_Private(152,3784
PetscErrorCode PetscSortStrWithPermutation(200,5002
-src/sys/utils/sorti.c,1728
-sorti.c:^?sorti.c^A,1
-#define MEDIAN3(9,240
-#define MEDIAN(11,383
-#define SWAP1(14,525
-#define SWAP2(20,617
-#define SWAP3(29,762
-#define SWAP2Data(43,1034
-#define TwoWayPartition1(69,1759
-#define TwoWayPartitionReverse1(102,2569
-#define TwoWayPartition2(119,2898
-#define TwoWayPartition3(136,3243
-#define QuickSort1(154,3660
-#define QuickSortReverse1(177,4287
-#define QuickSort2(199,4879
-#define QuickSort3(221,5497
-PetscErrorCode PetscSortedInt(259,6490
-PetscErrorCode PetscSortedInt64(284,7086
-PetscErrorCode PetscSortInt(311,7913
-PetscErrorCode PetscSortInt64(337,8447
-PetscErrorCode PetscSortCount(363,8987
-PetscErrorCode PetscSortReverseInt(386,9505
-PetscErrorCode PetscSortedRemoveDupsInt(412,10046
-PetscErrorCode PetscSortedCheckDupsInt(445,10796
-PetscErrorCode PetscSortRemoveDupsInt(477,11546
-PetscErrorCode PetscFindInt(503,12236
-PetscErrorCode PetscCheckDupsInt(540,13074
-PetscErrorCode PetscFindMPIInt(582,14138
-PetscErrorCode PetscSortIntWithArray(618,15108
-PetscErrorCode PetscSortIntWithArrayPair(643,15892
-PetscErrorCode PetscSortIntWithCountArray(667,16632
-PetscErrorCode PetscSortIntWithIntCountArrayPair(696,17634
-PetscErrorCode PetscSortedMPIInt(722,18382
-PetscErrorCode PetscSortMPIInt(747,19146
-PetscErrorCode PetscSortRemoveDupsMPIInt(772,19719
-PetscErrorCode PetscSortMPIIntWithArray(803,20509
-PetscErrorCode PetscSortMPIIntWithIntArray(830,21285
-PetscErrorCode PetscSortIntWithScalarArray(855,21997
-PetscErrorCode PetscSortIntWithDataArray(883,22935
-PetscErrorCode PetscMergeIntArray(940,24490
-PetscErrorCode PetscMergeIntArrayPair(1005,26380
-PetscErrorCode PetscMergeMPIIntArray(1063,27973
-PetscErrorCode PetscProcessTree(1106,29262
-PetscErrorCode PetscParallelSortedInt(1202,32351
-
src/sys/utils/sortd.c,465
sortd.c:^?sortd.c^A,1
#define SWAP(11,299
@@ -17763,12 +17779,6 @@
PetscErrorCode PetscSegBufferGetSize(249,7091
PetscErrorCode PetscSegBufferUnuse(269,7573
-src/sys/utils/psplit.c,142
-psplit.c:^?psplit.c^A,1
-PetscErrorCode PetscSplitOwnershipBlock(27,776
-PetscErrorCode PetscSplitOwnership(68,2280
-PetscErrorCode PetscSplitOwnershipEqual(127,5164
-
src/sys/utils/psleep.c,80
psleep.c:^?psleep.c^A,1
#define PETSC_DESIRE_FEATURE_TEST_MACROS 1,0
@@ -17804,13 +17814,6 @@
PetscErrorCode PetscCommBuildTwoSidedF(447,20325
PetscErrorCode PetscCommBuildTwoSidedFReq(498,23188
-src/sys/utils/mpitr.c,181
-mpitr.c:^?mpitr.c^A,1
-PetscErrorCode PetscMPIDump(27,653
-PetscErrorCode PetscMPIDump(61,2148
-PetscErrorCode MPIU_Win_allocate_shared(74,2463
-PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(85,2849
-
src/tao/f90-mod/petsctao.h90,0
petsctao.h90:^?petsctao.h90^A,1
@@ -17934,6 +17937,13 @@
src/vec/vec/tutorials/ex9f.F90,0
ex9f.F90:^?ex9f.F90^A,1
+src/sys/utils/mpitr.c,181
+mpitr.c:^?mpitr.c^A,1
+PetscErrorCode PetscMPIDump(27,653
+PetscErrorCode PetscMPIDump(61,2148
+PetscErrorCode MPIU_Win_allocate_shared(74,2463
+PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(85,2849
+
src/sys/utils/mpishm.c,1619
mpishm.c:^?mpishm.c^A,1
struct _n_PetscShmComm 4,83
@@ -17971,16 +17981,6 @@
PetscErrorCode PetscOmpCtrlOmpRegionOnMasterEnd(601,25522
#undef USE_MMAP_ALLOCATE_SHARED_MEMORY609,25753
-src/sys/utils/mpimesg.c,365
-mpimesg.c:^?mpimesg.c^A,1
-PetscErrorCode PetscGatherNumberOfMessages(32,1019
-PetscErrorCode PetscGatherMessageLengths(89,3103
-PetscErrorCode PetscGatherNumberOfMessages_Private(138,5195
-PetscErrorCode PetscGatherMessageLengths_Private(167,6362
-PetscErrorCode PetscGatherMessageLengths2(238,9092
-PetscErrorCode PetscPostIrecvInt(292,11238
-PetscErrorCode PetscPostIrecvScalar(315,12120
-
src/sys/utils/mpilong.c,73
mpilong.c:^?mpilong.c^A,1
PetscErrorCode MPIULong_Send(8,133
@@ -18250,6 +18250,11 @@
zptimef.c:^?zptimef.c^A,1
PETSC_EXTERN void petsctime_(10,249
+src/sys/tests/ex54.c,43
+ex54.c:^?ex54.c^A,1
+static char help[help2,1
+int main(7,106
+
src/sys/tests/ex61.c,49
ex61.c:^?ex61.c^A,1
static const char help[help1,0
@@ -18353,11 +18358,6 @@
static char help[help2,1
int main(6,86
-src/sys/tests/ex54.c,43
-ex54.c:^?ex54.c^A,1
-static char help[help2,1
-int main(7,106
-
src/sys/tests/ex53.c,69
ex53.c:^?ex53.c^A,1
static char help[help1,0
@@ -18713,6 +18713,169 @@
PETSC_EXTERN void petscpythoninitialize_(11,339
PETSC_EXTERN void petscpythonfinalize_(21,634
+src/sys/objects/pinit.c,3913
+pinit.c:^?pinit.c^A,1
+#define PETSC_DESIRE_FEATURE_TEST_MACROS1,0
+ #define __gcov_flush(20,516
+PETSC_INTERN PetscFPT PetscFPTData;27,653
+PetscFPT PetscFPTData 28,689
+PETSC_INTERN FILE *petsc_history;petsc_history37,900
+MPI_Comm PETSC_COMM_WORLD 46,1342
+PetscMPIInt PETSC_MPI_THREAD_REQUIRED 48,1424
+PetscMPIInt PETSC_MPI_THREAD_REQUIRED 50,1491
+PetscMPIInt Petsc_Counter_keyval 53,1542
+PetscMPIInt Petsc_InnerComm_keyval 54,1602
+PetscMPIInt Petsc_OuterComm_keyval 55,1662
+PetscMPIInt Petsc_ShmComm_keyval 56,1722
+PetscMPIInt Petsc_CreationIdx_keyval 57,1782
+PetscMPIInt Petsc_Garbage_HMap_keyval 58,1842
+const char *const PetscBools[PetscBools63,1970
+const char *const PetscCopyModes[PetscCopyModes64,2055
+PetscBool PetscPreLoadingUsed 66,2173
+PetscBool PetscPreLoadingOn 67,2218
+PetscInt PetscHotRegionDepth;69,2264
+PetscBool PETSC_RUNNING_ON_VALGRIND 71,2295
+PetscSpinlock PetscViewerASCIISpinLockOpen;74,2384
+PetscSpinlock PetscViewerASCIISpinLockStdout;75,2428
+PetscSpinlock PetscViewerASCIISpinLockStderr;76,2474
+PetscSpinlock PetscCommSpinLock;77,2520
+PetscErrorCode PetscInitializeNoPointers(96,3230
+PetscErrorCode PetscGetPETSC_COMM_SELF(111,3625
+PetscErrorCode PetscInitializeNoArguments(129,4036
+PetscErrorCode PetscInitialized(146,4419
+PetscErrorCode PetscFinalized(161,4841
+MPI_Op MPIU_MAXSUM_OP 175,5281
+MPI_Op Petsc_Garbage_SetIntersectOp 176,5322
+PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(178,5364
+PetscErrorCode PetscMaxSum(203,6229
+ PetscInt max,209,6415
+ PetscInt max, sum;209,6415
+ PetscInt max,219,6651
+ PetscInt max, sum;219,6651
+MPI_Op MPIU_SUM___FP16___FLOAT128 239,7275
+MPI_Op MPIU_SUM 241,7389
+PETSC_EXTERN void MPIAPI PetscSum_Local(244,7420
+MPI_Op MPIU_MAX 291,9305
+MPI_Op MPIU_MIN 292,9326
+PETSC_EXTERN void MPIAPI PetscMax_Local(294,9348
+PETSC_EXTERN void MPIAPI PetscMin_Local(316,10134
+PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_Delete_Fn(347,11281
+PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_Delete_Fn(376,12351
+ MPI_Comm comm;380,12498
+ void *ptr;ptr381,12517
+ MPI_Comm comm;392,12887
+ void *ptr;ptr393,12908
+PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_Delete_Fn(407,13689
+PetscMPIInt PETSC_MPI_ERROR_CLASS 422,14476
+PETSC_INTERN int PetscGlobalArgc;424,14553
+PETSC_INTERN char **PetscGlobalArgs;PetscGlobalArgs425,14590
+int PetscGlobalArgc 426,14627
+char **PetscGlobalArgs PetscGlobalArgs427,14668
+PetscSegBuffer PetscCitationsList;428,14712
+PetscErrorCode PetscCitationsInitialize(430,14753
+static char programname[programname462,16430
+PetscErrorCode PetscSetProgramName(464,16519
+PetscErrorCode PetscGetProgramName(485,16980
+PetscErrorCode PetscGetArgs(512,17776
+PetscErrorCode PetscGetArguments(537,18564
+PetscErrorCode PetscFreeArguments(565,19383
+PETSC_INTERN PetscErrorCode PetscInitializeSAWs(580,19667
+PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(690,25055
+int64_t Petsc_adios_group;703,25381
+PetscInt PetscNumOMPThreads;707,25464
+cudaStream_t PetscDefaultCudaStream 714,25612
+hipStream_t PetscDefaultHipStream 719,25734
+PetscBool PetscViennaCLSynchronize 730,26015
+PetscBool PetscCIEnabled 733,26091
+PETSC_INTERN PetscErrorCode PetscInitialize_Common(744,26544
+ #define PSTRSZ 814,29447
+PetscErrorCode PetscInitialize(1230,50443
+PETSC_INTERN PetscObject *PetscObjects;PetscObjects1272,52067
+PETSC_INTERN PetscInt PetscObjectsCounts;1273,52107
+PETSC_INTERN PetscInt PetscObjectsMaxCounts;1274,52153
+PETSC_INTERN PetscBool PetscObjectsLog;1275,52202
+PetscErrorCode PetscFreeMPIResources(1281,52330
+PetscErrorCode PetscFinalize(1340,54517
+ MPI_Comm comm;1361,55233
+ void *ptr;ptr1362,55254
+ MPI_Comm comm;1722,68628
+ void *ptr;ptr1723,68649
+PETSC_EXTERN int lsame_(1797,72030
+PETSC_EXTERN int lsame(1807,72224
+
+src/sys/objects/inherit.c,2505
+inherit.c:^?inherit.c^A,1
+PETSC_INTERN PetscObject *PetscObjects;PetscObjects8,196
+PETSC_INTERN PetscInt PetscObjectsCounts;9,236
+PETSC_INTERN PetscInt PetscObjectsMaxCounts;10,282
+PETSC_INTERN PetscBool PetscObjectsLog;11,331
+PetscObject *PetscObjects PetscObjects15,409
+PetscInt PetscObjectsCounts 16,449
+PetscBool PetscObjectsLog 17,513
+PetscObjectId PetscObjectNewId_Internal(25,963
+PetscErrorCode PetscHeaderCreate_Private(35,1216
+PETSC_INTERN PetscBool PetscMemoryCollectMaximumUsage;94,3553
+PETSC_INTERN PetscLogDouble PetscMemoryMaximumUsage;95,3613
+PetscErrorCode PetscHeaderDestroy_Private(101,3789
+PetscErrorCode PetscHeaderReset_Internal(202,7703
+PetscErrorCode PetscObjectCopyFortranFunctionPointers(225,8224
+PetscErrorCode PetscObjectSetFortranCallback(269,10098
+PetscErrorCode PetscObjectGetFortranCallback(314,11826
+PetscErrorCode PetscObjectsDump(344,13002
+PetscErrorCode PetscObjectsView(409,14994
+PetscErrorCode PetscObjectsGetObject(438,15752
+PetscErrorCode PetscObjectSetPrintedOptions(477,16844
+PetscErrorCode PetscObjectInheritPrintedOptions(502,17728
+PetscErrorCode PetscObjectAddOptionsHandler(530,18637
+PetscErrorCode PetscObjectProcessOptionsHandlers(554,19584
+PetscErrorCode PetscObjectDestroyOptionsHandlers(574,20250
+PetscErrorCode PetscObjectReference(600,21021
+PetscErrorCode PetscObjectGetReference(626,21643
+PetscErrorCode PetscObjectDereference(653,22477
+PetscErrorCode PetscObjectRemoveReference(668,23022
+PetscErrorCode PetscObjectCompose_Petsc(676,23245
+PetscErrorCode PetscObjectQuery_Petsc(690,23754
+PetscErrorCode PetscObjectComposeFunction_Petsc(698,23984
+PetscErrorCode PetscObjectQueryFunction_Petsc(706,24227
+PetscErrorCode PetscObjectCompose(746,25690
+PetscErrorCode PetscObjectQuery(778,26818
+PetscErrorCode PetscObjectComposeFunction_Private(820,28303
+PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(850,29234
+struct _p_PetscContainer 859,29524
+ PETSCHEADER(860,29551
+ void *ptr;ptr861,29571
+ PetscErrorCode (*userdestroy)userdestroy862,29584
+PetscErrorCode PetscContainerUserDestroyDefault(878,30038
+PetscErrorCode PetscContainerGetPointer(901,30590
+PetscErrorCode PetscContainerSetPointer(924,31215
+PetscErrorCode PetscContainerDestroy(949,31919
+PetscErrorCode PetscContainerSetUserDestroy(979,32979
+PetscClassId PETSC_CONTAINER_CLASSID;987,33214
+PetscErrorCode PetscContainerCreate(1008,33925
+PetscErrorCode PetscObjectSetFromOptions(1032,34589
+PetscErrorCode PetscObjectSetUp(1054,34975
+
+src/sys/objects/destroy.c,932
+destroy.c:^?destroy.c^A,1
+PetscErrorCode PetscComposedQuantitiesDestroy(8,168
+PetscErrorCode PetscObjectDestroy(45,1520
+PetscErrorCode PetscObjectView(70,2315
+PetscErrorCode PetscObjectViewFromOptions(113,4312
+PetscErrorCode PetscObjectTypeCompare(155,5820
+PetscErrorCode PetscObjectObjectTypeCompare(187,6861
+PetscErrorCode PetscObjectBaseTypeCompare(213,7675
+PetscErrorCode PetscObjectTypeCompareAny(245,8877
+PetscErrorCode PetscObjectBaseTypeCompareAny(284,10174
+#define MAXREGDESOBJS 305,10694
+static int PetscObjectRegisterDestroy_Count 306,10720
+static PetscObject PetscObjectRegisterDestroy_Objects[PetscObjectRegisterDestroy_Objects307,10777
+PetscErrorCode PetscObjectRegisterDestroy(328,11383
+PetscErrorCode PetscObjectRegisterDestroyAll(347,12246
+#define MAXREGFIN 355,12527
+static int PetscRegisterFinalize_Count 356,12549
+PetscErrorCode PetscRegisterFinalize(374,13009
+PetscErrorCode PetscRegisterFinalizeAll(394,13876
+
src/sys/objects/options.c,4270
options.c:^?options.c^A,1
#define PETSC_DESIRE_FEATURE_TEST_MACROS 2,130
@@ -18817,27 +18980,6 @@
PetscErrorCode PetscObjectSetTabLevel(109,3013
PetscErrorCode PetscObjectIncrementTabLevel(137,3968
-src/sys/objects/destroy.c,932
-destroy.c:^?destroy.c^A,1
-PetscErrorCode PetscComposedQuantitiesDestroy(8,168
-PetscErrorCode PetscObjectDestroy(45,1520
-PetscErrorCode PetscObjectView(70,2315
-PetscErrorCode PetscObjectViewFromOptions(113,4312
-PetscErrorCode PetscObjectTypeCompare(155,5820
-PetscErrorCode PetscObjectObjectTypeCompare(187,6860
-PetscErrorCode PetscObjectBaseTypeCompare(213,7674
-PetscErrorCode PetscObjectTypeCompareAny(245,8876
-PetscErrorCode PetscObjectBaseTypeCompareAny(284,10173
-#define MAXREGDESOBJS 305,10693
-static int PetscObjectRegisterDestroy_Count 306,10719
-static PetscObject PetscObjectRegisterDestroy_Objects[PetscObjectRegisterDestroy_Objects307,10776
-PetscErrorCode PetscObjectRegisterDestroy(328,11382
-PetscErrorCode PetscObjectRegisterDestroyAll(347,12245
-#define MAXREGFIN 355,12526
-static int PetscRegisterFinalize_Count 356,12548
-PetscErrorCode PetscRegisterFinalize(374,13008
-PetscErrorCode PetscRegisterFinalizeAll(394,13875
-
src/sys/objects/version.c,85
version.c:^?version.c^A,1
PetscErrorCode PetscGetVersion(21,465
@@ -18881,148 +19023,6 @@
PetscErrorCode PetscObjectGetOptionsPrefix(154,5224
PetscErrorCode PetscObjectPrependOptionsPrefix(180,6083
-src/sys/objects/pinit.c,3913
-pinit.c:^?pinit.c^A,1
-#define PETSC_DESIRE_FEATURE_TEST_MACROS1,0
- #define __gcov_flush(20,516
-PETSC_INTERN PetscFPT PetscFPTData;27,653
-PetscFPT PetscFPTData 28,689
-PETSC_INTERN FILE *petsc_history;petsc_history37,900
-MPI_Comm PETSC_COMM_WORLD 46,1342
-PetscMPIInt PETSC_MPI_THREAD_REQUIRED 48,1424
-PetscMPIInt PETSC_MPI_THREAD_REQUIRED 50,1491
-PetscMPIInt Petsc_Counter_keyval 53,1542
-PetscMPIInt Petsc_InnerComm_keyval 54,1602
-PetscMPIInt Petsc_OuterComm_keyval 55,1662
-PetscMPIInt Petsc_ShmComm_keyval 56,1722
-PetscMPIInt Petsc_CreationIdx_keyval 57,1782
-PetscMPIInt Petsc_Garbage_HMap_keyval 58,1842
-const char *const PetscBools[PetscBools63,1970
-const char *const PetscCopyModes[PetscCopyModes64,2055
-PetscBool PetscPreLoadingUsed 66,2173
-PetscBool PetscPreLoadingOn 67,2218
-PetscInt PetscHotRegionDepth;69,2264
-PetscBool PETSC_RUNNING_ON_VALGRIND 71,2295
-PetscSpinlock PetscViewerASCIISpinLockOpen;74,2384
-PetscSpinlock PetscViewerASCIISpinLockStdout;75,2428
-PetscSpinlock PetscViewerASCIISpinLockStderr;76,2474
-PetscSpinlock PetscCommSpinLock;77,2520
-PetscErrorCode PetscInitializeNoPointers(96,3230
-PetscErrorCode PetscGetPETSC_COMM_SELF(111,3625
-PetscErrorCode PetscInitializeNoArguments(129,4036
-PetscErrorCode PetscInitialized(146,4419
-PetscErrorCode PetscFinalized(161,4841
-MPI_Op MPIU_MAXSUM_OP 175,5281
-MPI_Op Petsc_Garbage_SetIntersectOp 176,5322
-PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(178,5364
-PetscErrorCode PetscMaxSum(203,6229
- PetscInt max,209,6415
- PetscInt max, sum;209,6415
- PetscInt max,219,6651
- PetscInt max, sum;219,6651
-MPI_Op MPIU_SUM___FP16___FLOAT128 239,7275
-MPI_Op MPIU_SUM 241,7389
-PETSC_EXTERN void MPIAPI PetscSum_Local(244,7420
-MPI_Op MPIU_MAX 291,9305
-MPI_Op MPIU_MIN 292,9326
-PETSC_EXTERN void MPIAPI PetscMax_Local(294,9348
-PETSC_EXTERN void MPIAPI PetscMin_Local(316,10134
-PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_Delete_Fn(347,11281
-PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_Delete_Fn(376,12351
- MPI_Comm comm;380,12498
- void *ptr;ptr381,12517
- MPI_Comm comm;392,12887
- void *ptr;ptr393,12908
-PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_Delete_Fn(407,13689
-PetscMPIInt PETSC_MPI_ERROR_CLASS 422,14476
-PETSC_INTERN int PetscGlobalArgc;424,14553
-PETSC_INTERN char **PetscGlobalArgs;PetscGlobalArgs425,14590
-int PetscGlobalArgc 426,14627
-char **PetscGlobalArgs PetscGlobalArgs427,14668
-PetscSegBuffer PetscCitationsList;428,14712
-PetscErrorCode PetscCitationsInitialize(430,14753
-static char programname[programname462,16430
-PetscErrorCode PetscSetProgramName(464,16519
-PetscErrorCode PetscGetProgramName(485,16980
-PetscErrorCode PetscGetArgs(512,17776
-PetscErrorCode PetscGetArguments(537,18564
-PetscErrorCode PetscFreeArguments(565,19383
-PETSC_INTERN PetscErrorCode PetscInitializeSAWs(580,19667
-PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(690,25055
-int64_t Petsc_adios_group;703,25381
-PetscInt PetscNumOMPThreads;707,25464
-cudaStream_t PetscDefaultCudaStream 714,25612
-hipStream_t PetscDefaultHipStream 719,25734
-PetscBool PetscViennaCLSynchronize 730,26015
-PetscBool PetscCIEnabled 733,26091
-PETSC_INTERN PetscErrorCode PetscInitialize_Common(744,26543
- #define PSTRSZ 814,29446
-PetscErrorCode PetscInitialize(1230,50442
-PETSC_INTERN PetscObject *PetscObjects;PetscObjects1272,52066
-PETSC_INTERN PetscInt PetscObjectsCounts;1273,52106
-PETSC_INTERN PetscInt PetscObjectsMaxCounts;1274,52152
-PETSC_INTERN PetscBool PetscObjectsLog;1275,52201
-PetscErrorCode PetscFreeMPIResources(1281,52329
-PetscErrorCode PetscFinalize(1340,54516
- MPI_Comm comm;1361,55232
- void *ptr;ptr1362,55253
- MPI_Comm comm;1722,68627
- void *ptr;ptr1723,68648
-PETSC_EXTERN int lsame_(1797,72029
-PETSC_EXTERN int lsame(1807,72223
-
-src/sys/objects/inherit.c,2505
-inherit.c:^?inherit.c^A,1
-PETSC_INTERN PetscObject *PetscObjects;PetscObjects8,196
-PETSC_INTERN PetscInt PetscObjectsCounts;9,236
-PETSC_INTERN PetscInt PetscObjectsMaxCounts;10,282
-PETSC_INTERN PetscBool PetscObjectsLog;11,331
-PetscObject *PetscObjects PetscObjects15,409
-PetscInt PetscObjectsCounts 16,449
-PetscBool PetscObjectsLog 17,513
-PetscObjectId PetscObjectNewId_Internal(25,963
-PetscErrorCode PetscHeaderCreate_Private(35,1216
-PETSC_INTERN PetscBool PetscMemoryCollectMaximumUsage;94,3553
-PETSC_INTERN PetscLogDouble PetscMemoryMaximumUsage;95,3613
-PetscErrorCode PetscHeaderDestroy_Private(101,3789
-PetscErrorCode PetscHeaderReset_Internal(202,7703
-PetscErrorCode PetscObjectCopyFortranFunctionPointers(225,8224
-PetscErrorCode PetscObjectSetFortranCallback(269,10098
-PetscErrorCode PetscObjectGetFortranCallback(314,11826
-PetscErrorCode PetscObjectsDump(344,13002
-PetscErrorCode PetscObjectsView(409,14994
-PetscErrorCode PetscObjectsGetObject(438,15752
-PetscErrorCode PetscObjectSetPrintedOptions(477,16844
-PetscErrorCode PetscObjectInheritPrintedOptions(502,17728
-PetscErrorCode PetscObjectAddOptionsHandler(530,18637
-PetscErrorCode PetscObjectProcessOptionsHandlers(554,19584
-PetscErrorCode PetscObjectDestroyOptionsHandlers(574,20250
-PetscErrorCode PetscObjectReference(600,21021
-PetscErrorCode PetscObjectGetReference(626,21643
-PetscErrorCode PetscObjectDereference(653,22477
-PetscErrorCode PetscObjectRemoveReference(668,23022
-PetscErrorCode PetscObjectCompose_Petsc(676,23245
-PetscErrorCode PetscObjectQuery_Petsc(690,23754
-PetscErrorCode PetscObjectComposeFunction_Petsc(698,23984
-PetscErrorCode PetscObjectQueryFunction_Petsc(706,24227
-PetscErrorCode PetscObjectCompose(746,25690
-PetscErrorCode PetscObjectQuery(778,26818
-PetscErrorCode PetscObjectComposeFunction_Private(821,28341
-PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(851,29272
-struct _p_PetscContainer 860,29562
- PETSCHEADER(861,29589
- void *ptr;ptr862,29609
- PetscErrorCode (*userdestroy)userdestroy863,29622
-PetscErrorCode PetscContainerUserDestroyDefault(879,30076
-PetscErrorCode PetscContainerGetPointer(902,30628
-PetscErrorCode PetscContainerSetPointer(925,31253
-PetscErrorCode PetscContainerDestroy(950,31957
-PetscErrorCode PetscContainerSetUserDestroy(980,33017
-PetscClassId PETSC_CONTAINER_CLASSID;988,33252
-PetscErrorCode PetscContainerCreate(1009,33963
-PetscErrorCode PetscObjectSetFromOptions(1033,34627
-PetscErrorCode PetscObjectSetUp(1055,35013
-
src/sys/objects/aoptions.c,1675
aoptions.c:^?aoptions.c^A,1
#define ManSection(10,283
@@ -19507,39 +19507,6 @@
static const char help[help1,0
int main(5,118
-src/sys/objects/device/interface/dcontext.cxx,1662
-dcontext.cxx:^?dcontext.cxx^A,1
-class PetscDeviceContextAllocator 12,384
- PETSC_CXX_COMPAT_DECL(14,478
- PETSC_CXX_COMPAT_DECL(23,901
- PETSC_CXX_COMPAT_DECL(35,1474
-static Petsc::ObjectPool<PetscDeviceContext, PetscDeviceContextAllocator> contextPool;59,2330
-PetscErrorCode PetscDeviceContextCreate(90,3194
-PetscErrorCode PetscDeviceContextDestroy(134,4533
-PetscErrorCode PetscDeviceContextSetStreamType(172,6088
-PetscErrorCode PetscDeviceContextGetStreamType(211,7351
-static PetscErrorCode PetscDeviceContextSetDevice_Private(233,8392
-PetscErrorCode PetscDeviceContextSetDefaultDeviceForType_Internal(253,9367
-PetscErrorCode PetscDeviceContextSetDevice(288,10584
-PetscErrorCode PetscDeviceContextGetDevice(313,11222
-PetscErrorCode PetscDeviceContextGetDeviceType(342,12128
-PetscErrorCode PetscDeviceContextSetUp(371,12997
-static PetscErrorCode PetscDeviceContextDuplicate_Private(389,13836
-PetscErrorCode PetscDeviceContextDuplicate(432,15298
-PetscErrorCode PetscDeviceContextQueryIdle(464,16337
-PetscErrorCode PetscDeviceContextWaitForContext(508,17936
-PetscErrorCode PetscDeviceContextForkWithStreamType(574,20526
-PetscErrorCode PetscDeviceContextFork(665,24048
-PetscErrorCode PetscDeviceContextJoin(741,26686
-PetscErrorCode PetscDeviceContextSynchronize(828,30458
-static auto nullContexts 843,31089
-static auto nullContextsFinalizer 844,31190
-static PetscErrorCode PetscDeviceContextGetNullContextForDevice_Private(846,31234
-PetscErrorCode PetscDeviceContextGetNullContext_Internal(904,33769
-PetscErrorCode PetscDeviceContextSetFromOptions(943,35074
-PetscErrorCode PetscDeviceContextView(993,37066
-PetscErrorCode PetscDeviceContextViewFromOptions(1044,39175
-
src/sys/objects/device/interface/memory.cxx,1242
memory.cxx:^?memory.cxx^A,1
const char *const PetscDeviceCopyModes[PetscDeviceCopyModes10,277
@@ -19549,24 +19516,35 @@
PetscMemType mtype 32,1430
PetscObjectId id 33,1499
std::size_t size 34,1563
-inline constexpr PointerAttributes::PointerAttributes(49,2252
-inline bool PointerAttributes::operator==(operator==51,2417
-inline bool PointerAttributes::contains(contains66,2877
-class MemoryMap 86,3792
- using map_type 88,3866
- using map_type = std::unordered_map<void *, PointerAttributes,88,3866
- map_type map{map90,3946
-PetscErrorCode MemoryMap::register_finalize_(register_finalize_104,4467
-PetscErrorCode MemoryMap::finalize_(finalize_114,4856
-MemoryMap::map_type::const_iterator MemoryMap::search_for(search_for139,5758
-static MemoryMap memory_map;157,6574
-static PetscErrorCode PetscDeviceCheckCapable_Private(163,6814
-static PetscErrorCode PetscDeviceRegisterMemory_Private(173,7471
-PetscErrorCode PetscDeviceRegisterMemory(236,10094
-PetscErrorCode PetscDeviceAllocate_Private(306,12597
-PetscErrorCode PetscDeviceDeallocate_Private(372,15040
-PetscErrorCode PetscDeviceMemcpy(450,17961
-PetscErrorCode PetscDeviceMemset(522,20667
+inline constexpr PointerAttributes::PointerAttributes(49,2253
+inline bool PointerAttributes::operator==(operator==51,2418
+inline bool PointerAttributes::contains(contains66,2878
+class MemoryMap 86,3793
+ using map_type 88,3867
+ using map_type = std::unordered_map<void *, PointerAttributes,88,3867
+ map_type map{map90,3947
+PetscErrorCode MemoryMap::register_finalize_(register_finalize_104,4468
+PetscErrorCode MemoryMap::finalize_(finalize_114,4857
+MemoryMap::map_type::const_iterator MemoryMap::search_for(search_for139,5759
+static MemoryMap memory_map;157,6575
+static PetscErrorCode PetscDeviceCheckCapable_Private(163,6815
+static PetscErrorCode PetscDeviceRegisterMemory_Private(173,7472
+PetscErrorCode PetscDeviceRegisterMemory(236,10095
+PetscErrorCode PetscDeviceAllocate_Private(306,12598
+PetscErrorCode PetscDeviceDeallocate_Private(372,15041
+PetscErrorCode PetscDeviceMemcpy(450,17962
+PetscErrorCode PetscDeviceMemset(522,20668
+
+src/sys/objects/device/interface/global_dcontext.cxx,473
+global_dcontext.cxx:^?global_dcontext.cxx^A,1
+static auto rootDeviceType 3,71
+static auto rootStreamType 4,156
+static PetscDeviceContext globalContext 5,241
+PetscErrorCode PetscDeviceContextSetRootDeviceType_Internal(9,437
+PetscErrorCode PetscDeviceContextSetRootStreamType_Internal(17,630
+static PetscErrorCode PetscDeviceContextSetupGlobalContext_Private(25,823
+PetscErrorCode PetscDeviceContextGetCurrentContext(80,3018
+PetscErrorCode PetscDeviceContextSetCurrentContext(115,4500
src/sys/objects/device/interface/device.cxx,1521
device.cxx:^?device.cxx^A,1
@@ -19589,15 +19567,48 @@
PetscDeviceType PETSC_DEVICE_DEFAULT(328,9632
PetscErrorCode PetscDeviceSetDefaultDeviceType(348,10034
static std::array<std::pair<PetscDevice, bool>, PETSC_DEVICE_MAX> defaultDevices 360,10406
-static PetscErrorCode PetscDeviceInitializeDefaultDevice_Internal(366,10640
-PetscErrorCode PetscDeviceInitialize(399,11676
-PetscBool PetscDeviceInitialized(427,12467
-PetscErrorCode PetscDeviceGetDefaultForType_Internal(433,12731
-PetscErrorCode PetscDeviceGetAttribute(464,13657
-static PetscErrorCode PetscDeviceInitializeTypeFromOptions_Private(474,13966
-static PetscErrorCode PetscDeviceInitializeQueryOptions_Private(505,16020
-static PetscErrorCode PetscDeviceFinalize_Private(537,18355
-PetscErrorCode PetscDeviceInitializeFromOptions_Internal(595,21035
+static PetscErrorCode PetscDeviceInitializeDefaultDevice_Internal(366,10641
+PetscErrorCode PetscDeviceInitialize(399,11677
+PetscBool PetscDeviceInitialized(427,12468
+PetscErrorCode PetscDeviceGetDefaultForType_Internal(433,12732
+PetscErrorCode PetscDeviceGetAttribute(464,13659
+static PetscErrorCode PetscDeviceInitializeTypeFromOptions_Private(474,13968
+static PetscErrorCode PetscDeviceInitializeQueryOptions_Private(505,16022
+static PetscErrorCode PetscDeviceFinalize_Private(537,18358
+PetscErrorCode PetscDeviceInitializeFromOptions_Internal(595,21038
+
+src/sys/objects/device/interface/dcontext.cxx,1662
+dcontext.cxx:^?dcontext.cxx^A,1
+class PetscDeviceContextAllocator 12,384
+ PETSC_CXX_COMPAT_DECL(14,478
+ PETSC_CXX_COMPAT_DECL(23,901
+ PETSC_CXX_COMPAT_DECL(35,1474
+static Petsc::ObjectPool<PetscDeviceContext, PetscDeviceContextAllocator> contextPool;59,2330
+PetscErrorCode PetscDeviceContextCreate(90,3194
+PetscErrorCode PetscDeviceContextDestroy(134,4534
+PetscErrorCode PetscDeviceContextSetStreamType(172,6089
+PetscErrorCode PetscDeviceContextGetStreamType(211,7352
+static PetscErrorCode PetscDeviceContextSetDevice_Private(233,8393
+PetscErrorCode PetscDeviceContextSetDefaultDeviceForType_Internal(253,9368
+PetscErrorCode PetscDeviceContextSetDevice(288,10586
+PetscErrorCode PetscDeviceContextGetDevice(313,11224
+PetscErrorCode PetscDeviceContextGetDeviceType(342,12130
+PetscErrorCode PetscDeviceContextSetUp(371,12999
+static PetscErrorCode PetscDeviceContextDuplicate_Private(389,13838
+PetscErrorCode PetscDeviceContextDuplicate(432,15300
+PetscErrorCode PetscDeviceContextQueryIdle(464,16339
+PetscErrorCode PetscDeviceContextWaitForContext(508,17938
+PetscErrorCode PetscDeviceContextForkWithStreamType(574,20528
+PetscErrorCode PetscDeviceContextFork(665,24050
+PetscErrorCode PetscDeviceContextJoin(741,26688
+PetscErrorCode PetscDeviceContextSynchronize(828,30460
+static auto nullContexts 843,31091
+static auto nullContextsFinalizer 844,31192
+static PetscErrorCode PetscDeviceContextGetNullContextForDevice_Private(846,31236
+PetscErrorCode PetscDeviceContextGetNullContext_Internal(904,33771
+PetscErrorCode PetscDeviceContextSetFromOptions(943,35076
+PetscErrorCode PetscDeviceContextView(993,37068
+PetscErrorCode PetscDeviceContextViewFromOptions(1044,39177
src/sys/objects/device/interface/mark_dcontext.cxx,2897
mark_dcontext.cxx:^?mark_dcontext.cxx^A,1
@@ -19665,17 +19676,6 @@
DIRS 8,241
LOCDIR 9,250
-src/sys/objects/device/interface/global_dcontext.cxx,473
-global_dcontext.cxx:^?global_dcontext.cxx^A,1
-static auto rootDeviceType 3,71
-static auto rootStreamType 4,156
-static PetscDeviceContext globalContext 5,241
-PetscErrorCode PetscDeviceContextSetRootDeviceType_Internal(9,436
-PetscErrorCode PetscDeviceContextSetRootStreamType_Internal(17,629
-static PetscErrorCode PetscDeviceContextSetupGlobalContext_Private(25,822
-PetscErrorCode PetscDeviceContextGetCurrentContext(80,3017
-PetscErrorCode PetscDeviceContextSetCurrentContext(115,4498
-
src/sys/objects/device/impls/makefile,98
makefile:^?makefile^A,1
SOURCEC 4,70
@@ -19869,6 +19869,12 @@
PetscErrorCode PetscCUBLASGetHandle(17,491
PetscErrorCode PetscCUSOLVERDnGetHandle(28,828
+src/sys/objects/cxx/elemental.cxx,159
+elemental.cxx:^?elemental.cxx^A,1
+PetscErrorCode PetscElementalInitializePackage(21,696
+PetscErrorCode PetscElementalInitialized(48,1895
+PetscErrorCode PetscElementalFinalizePackage(67,2437
+
src/sys/objects/cxx/makefile,101
makefile:^?makefile^A,1
SOURCECXX=4,74
@@ -19879,18 +19885,6 @@
LOCDIR 9,159
DIRS 10,191
-src/sys/objects/cxx/elemental.cxx,159
-elemental.cxx:^?elemental.cxx^A,1
-PetscErrorCode PetscElementalInitializePackage(21,696
-PetscErrorCode PetscElementalInitialized(48,1895
-PetscErrorCode PetscElementalFinalizePackage(67,2437
-
-src/sys/mpiuni/mpitime.c,76
-mpitime.c:^?mpitime.c^A,1
- #define FACTOR 14,332
-double MPI_Wtime(16,379
-double MPI_Wtime(74,2311
-
src/sys/mpiuni/mpi.c,9754
mpi.c:^?mpi.c^A,1
#define MPI_SUCCESS 13,276
@@ -20085,52 +20079,58 @@
#define petsc_mpi_wait_ 580,21181
#define petsc_mpi_comm_group_ 581,21238
#define petsc_mpi_exscan_ 582,21301
-PETSC_EXTERN void mpiunisetfortranbasepointers_(590,21529
-PETSC_EXTERN void petsc_mpi_init_(595,21645
-PETSC_EXTERN void petsc_mpi_finalize_(601,21765
-PETSC_EXTERN void petsc_mpi_comm_size_(606,21845
-PETSC_EXTERN void petsc_mpi_comm_rank_(612,21953
-PETSC_EXTERN void petsc_mpi_comm_split_(618,22071
-PETSC_EXTERN void petsc_mpi_abort_(624,22230
-PETSC_EXTERN void petsc_mpi_reduce_(630,22347
-PETSC_EXTERN void petsc_mpi_allreduce_(635,22565
-PETSC_EXTERN void petsc_mpi_barrier_(640,22771
-PETSC_EXTERN void petsc_mpi_bcast_(645,22863
-PETSC_EXTERN void petsc_mpi_gather_(650,22997
-PETSC_EXTERN void petsc_mpi_allgather_(655,23253
-PETSC_EXTERN void petsc_mpi_scan_(660,23497
-PETSC_EXTERN void petsc_mpi_send_(665,23701
-PETSC_EXTERN void petsc_mpi_recv_(670,23864
-PETSC_EXTERN void petsc_mpi_reduce_scatter_(675,24041
-PETSC_EXTERN void petsc_mpi_irecv_(680,24226
-PETSC_EXTERN void petsc_mpi_isend_(685,24406
-PETSC_EXTERN void petsc_mpi_sendrecv_(690,24584
-PETSC_EXTERN void petsc_mpi_test_(695,24887
-PETSC_EXTERN void petsc_mpi_waitall_(700,25018
-PETSC_EXTERN void petsc_mpi_waitany_(705,25154
-PETSC_EXTERN void petsc_mpi_allgatherv_(710,25291
-PETSC_EXTERN void petsc_mpi_alltoallv_(715,25569
-PETSC_EXTERN void petsc_mpi_comm_create_(720,25871
-PETSC_EXTERN void petsc_mpi_address_(726,26011
-PETSC_EXTERN void petsc_mpi_pack_(732,26168
-PETSC_EXTERN void petsc_mpi_unpack_(737,26357
-PETSC_EXTERN void petsc_mpi_pack_size_(742,26548
-PETSC_EXTERN void petsc_mpi_type_struct_(747,26697
-PETSC_EXTERN void petsc_mpi_type_commit_(752,26899
-double petsc_mpi_wtime_(757,26994
-PETSC_EXTERN void petsc_mpi_cancel_(762,27043
-PETSC_EXTERN void petsc_mpi_comm_dup_(767,27132
-PETSC_EXTERN void petsc_mpi_comm_free_(773,27247
-PETSC_EXTERN void petsc_mpi_get_count_(778,27336
-PETSC_EXTERN void petsc_mpi_get_processor_name_(783,27474
-PETSC_EXTERN void petsc_mpi_initialized_(790,27698
-PETSC_EXTERN void petsc_mpi_iprobe_(796,27820
-PETSC_EXTERN void petsc_mpi_probe_(801,27953
-PETSC_EXTERN void petsc_mpi_request_free_(806,28085
-PETSC_EXTERN void petsc_mpi_ssend_(811,28180
-PETSC_EXTERN void petsc_mpi_wait_(816,28344
-PETSC_EXTERN void petsc_mpi_comm_group_(821,28444
-PETSC_EXTERN void petsc_mpi_exscan_(826,28546
+PETSC_EXTERN void mpiunisetfortranbasepointers_(590,21530
+PETSC_EXTERN void petsc_mpi_init_(595,21646
+PETSC_EXTERN void petsc_mpi_finalize_(601,21766
+PETSC_EXTERN void petsc_mpi_comm_size_(606,21846
+PETSC_EXTERN void petsc_mpi_comm_rank_(612,21954
+PETSC_EXTERN void petsc_mpi_comm_split_(618,22072
+PETSC_EXTERN void petsc_mpi_abort_(624,22231
+PETSC_EXTERN void petsc_mpi_reduce_(630,22348
+PETSC_EXTERN void petsc_mpi_allreduce_(635,22566
+PETSC_EXTERN void petsc_mpi_barrier_(640,22772
+PETSC_EXTERN void petsc_mpi_bcast_(645,22864
+PETSC_EXTERN void petsc_mpi_gather_(650,22998
+PETSC_EXTERN void petsc_mpi_allgather_(655,23254
+PETSC_EXTERN void petsc_mpi_scan_(660,23498
+PETSC_EXTERN void petsc_mpi_send_(665,23702
+PETSC_EXTERN void petsc_mpi_recv_(670,23865
+PETSC_EXTERN void petsc_mpi_reduce_scatter_(675,24042
+PETSC_EXTERN void petsc_mpi_irecv_(680,24227
+PETSC_EXTERN void petsc_mpi_isend_(685,24407
+PETSC_EXTERN void petsc_mpi_sendrecv_(690,24585
+PETSC_EXTERN void petsc_mpi_test_(695,24888
+PETSC_EXTERN void petsc_mpi_waitall_(700,25019
+PETSC_EXTERN void petsc_mpi_waitany_(705,25155
+PETSC_EXTERN void petsc_mpi_allgatherv_(710,25292
+PETSC_EXTERN void petsc_mpi_alltoallv_(715,25570
+PETSC_EXTERN void petsc_mpi_comm_create_(720,25872
+PETSC_EXTERN void petsc_mpi_address_(726,26012
+PETSC_EXTERN void petsc_mpi_pack_(732,26169
+PETSC_EXTERN void petsc_mpi_unpack_(737,26358
+PETSC_EXTERN void petsc_mpi_pack_size_(742,26549
+PETSC_EXTERN void petsc_mpi_type_struct_(747,26698
+PETSC_EXTERN void petsc_mpi_type_commit_(752,26900
+double petsc_mpi_wtime_(757,26995
+PETSC_EXTERN void petsc_mpi_cancel_(762,27044
+PETSC_EXTERN void petsc_mpi_comm_dup_(767,27133
+PETSC_EXTERN void petsc_mpi_comm_free_(773,27248
+PETSC_EXTERN void petsc_mpi_get_count_(778,27337
+PETSC_EXTERN void petsc_mpi_get_processor_name_(783,27475
+PETSC_EXTERN void petsc_mpi_initialized_(790,27699
+PETSC_EXTERN void petsc_mpi_iprobe_(796,27821
+PETSC_EXTERN void petsc_mpi_probe_(801,27954
+PETSC_EXTERN void petsc_mpi_request_free_(806,28086
+PETSC_EXTERN void petsc_mpi_ssend_(811,28181
+PETSC_EXTERN void petsc_mpi_wait_(816,28345
+PETSC_EXTERN void petsc_mpi_comm_group_(821,28445
+PETSC_EXTERN void petsc_mpi_exscan_(826,28547
+
+src/sys/mpiuni/mpitime.c,76
+mpitime.c:^?mpitime.c^A,1
+ #define FACTOR 14,332
+double MPI_Wtime(16,379
+double MPI_Wtime(74,2311
src/sys/mpiuni/makefile,100
makefile:^?makefile^A,1
@@ -20210,23 +20210,23 @@
PetscErrorCode PetscTrMallocDefault(170,6656
PetscErrorCode PetscTrFreeDefault(266,10167
PetscErrorCode PetscTrReallocDefault(349,13711
-PetscErrorCode PetscMemoryView(486,19318
-PetscErrorCode PetscMallocGetCurrentUsage(564,25562
-PetscErrorCode PetscMallocGetMaximumUsage(585,26189
-PetscErrorCode PetscMallocPushMaximumUsage(605,26735
-PetscErrorCode PetscMallocPopMaximumUsage(630,27508
-PetscErrorCode PetscMallocGetStack(656,28333
-PetscErrorCode PetscMallocGetStack(666,28554
-PetscErrorCode PetscMallocDump(703,29729
-PetscErrorCode PetscMallocViewSet(756,31455
-PetscErrorCode PetscMallocViewGet(781,32121
-PetscErrorCode PetscMallocTraceSet(805,32719
-PetscErrorCode PetscMallocTraceGet(835,33609
-PetscErrorCode PetscMallocView(867,34516
-PetscErrorCode PetscMallocSetDebug(955,38243
-PetscErrorCode PetscMallocGetDebug(990,39445
-PetscErrorCode PetscMallocLogRequestedSizeSet(1014,40142
-PetscErrorCode PetscMallocLogRequestedSizeGet(1033,40573
+PetscErrorCode PetscMemoryView(486,19319
+PetscErrorCode PetscMallocGetCurrentUsage(564,25563
+PetscErrorCode PetscMallocGetMaximumUsage(585,26190
+PetscErrorCode PetscMallocPushMaximumUsage(605,26736
+PetscErrorCode PetscMallocPopMaximumUsage(630,27509
+PetscErrorCode PetscMallocGetStack(656,28334
+PetscErrorCode PetscMallocGetStack(666,28555
+PetscErrorCode PetscMallocDump(703,29730
+PetscErrorCode PetscMallocViewSet(756,31456
+PetscErrorCode PetscMallocViewGet(781,32122
+PetscErrorCode PetscMallocTraceSet(805,32720
+PetscErrorCode PetscMallocTraceGet(835,33610
+PetscErrorCode PetscMallocView(867,34517
+PetscErrorCode PetscMallocSetDebug(955,38244
+PetscErrorCode PetscMallocGetDebug(990,39446
+PetscErrorCode PetscMallocLogRequestedSizeSet(1014,40143
+PetscErrorCode PetscMallocLogRequestedSizeGet(1033,40574
src/sys/memory/mhbw.c,202
mhbw.c:^?mhbw.c^A,1
@@ -20415,25 +20415,25 @@
static PetscErrorCode PetscLogViewWarnNoGpuAwareMpi(1421,52549
static PetscErrorCode PetscLogViewWarnGpuTime(1457,54662
PetscErrorCode PetscLogView_Default(1481,56148
-PetscErrorCode PetscLogView(2095,93541
-PetscErrorCode PetscLogViewFromOptions(2140,95272
-PetscErrorCode PetscGetFlops(2178,96456
-PetscErrorCode PetscLogObjectState(2185,96590
-PetscBool PetscLogGpuTimeFlag 2328,100470
-static PetscErrorCode PetscLogGpuTime_Off(2334,100709
-PetscErrorCode PetscLogGpuTime(2357,101480
-PetscErrorCode PetscLogGpuTimeBegin(2391,103202
-PetscErrorCode PetscLogGpuTimeEnd(2413,103807
-PetscErrorCode PetscLogObjectState(2433,104397
-PetscClassId PETSC_LARGEST_CLASSID 2441,104555
-PetscClassId PETSC_OBJECT_CLASSID 2442,104616
-PetscErrorCode PetscClassIdRegister(2459,104972
-PetscBool PetscBeganMPE 2479,105615
-PetscErrorCode PetscLogMPEBegin(2503,106551
-PetscErrorCode PetscLogMPEDump(2528,107296
- #define PETSC_RGB_COLORS_MAX 2547,107773
-static const char *PetscLogMPERGBColors[PetscLogMPERGBColors2548,107807
-PetscErrorCode PetscLogMPEGetRGBColor(2566,109205
+PetscErrorCode PetscLogView(2095,93542
+PetscErrorCode PetscLogViewFromOptions(2140,95273
+PetscErrorCode PetscGetFlops(2178,96457
+PetscErrorCode PetscLogObjectState(2185,96591
+PetscBool PetscLogGpuTimeFlag 2328,100471
+static PetscErrorCode PetscLogGpuTime_Off(2334,100710
+PetscErrorCode PetscLogGpuTime(2357,101481
+PetscErrorCode PetscLogGpuTimeBegin(2391,103205
+PetscErrorCode PetscLogGpuTimeEnd(2413,103810
+PetscErrorCode PetscLogObjectState(2433,104400
+PetscClassId PETSC_LARGEST_CLASSID 2441,104558
+PetscClassId PETSC_OBJECT_CLASSID 2442,104619
+PetscErrorCode PetscClassIdRegister(2459,104975
+PetscBool PetscBeganMPE 2479,105618
+PetscErrorCode PetscLogMPEBegin(2503,106554
+PetscErrorCode PetscLogMPEDump(2528,107299
+ #define PETSC_RGB_COLORS_MAX 2547,107776
+static const char *PetscLogMPERGBColors[PetscLogMPERGBColors2548,107810
+PetscErrorCode PetscLogMPEGetRGBColor(2566,109208
src/sys/logging/xmllogevent.c,3394
xmllogevent.c:^?xmllogevent.c^A,1
@@ -20764,27 +20764,45 @@
src/sys/fileio/mprint.c,942
mprint.c:^?mprint.c^A,1
-PETSC_INTERN FILE *petsc_history;petsc_history10,249
-FILE *PETSC_STDOUT PETSC_STDOUT16,505
-FILE *PETSC_STDERR PETSC_STDERR22,758
-PetscErrorCode PetscFormatConvertGetSize(39,1150
-PetscErrorCode PetscFormatConvert(95,2635
-#define PETSCDEFAULTBUFFERSIZE 143,4015
-PetscErrorCode PetscVSNPrintf(163,4746
-PetscErrorCode PetscVFPrintfDefault(289,8572
-PetscErrorCode PetscSNPrintf(333,9983
-PetscErrorCode PetscSNPrintfCount(363,10915
-PrintfQueue petsc_printfqueue 375,11259
-int petsc_printfqueuelength 376,11327
-PetscErrorCode PetscSynchronizedPrintf(401,12266
-PetscErrorCode PetscSynchronizedFPrintf(467,14439
-PetscErrorCode PetscSynchronizedFlush(534,16820
-PetscErrorCode PetscFPrintf(600,19200
-PetscErrorCode PetscPrintf(642,20553
-PetscErrorCode PetscHelpPrintfDefault(662,21144
-PetscErrorCode PetscSynchronizedFGets(702,22348
-PetscErrorCode PetscFormatStrip(730,23019
-PetscErrorCode PetscFormatRealArray(745,23398
+PETSC_INTERN FILE *petsc_history;petsc_history10,250
+FILE *PETSC_STDOUT PETSC_STDOUT16,506
+FILE *PETSC_STDERR PETSC_STDERR22,759
+PetscErrorCode PetscFormatConvertGetSize(39,1151
+PetscErrorCode PetscFormatConvert(95,2636
+#define PETSCDEFAULTBUFFERSIZE 143,4016
+PetscErrorCode PetscVSNPrintf(163,4747
+PetscErrorCode PetscVFPrintfDefault(289,8573
+PetscErrorCode PetscSNPrintf(333,9984
+PetscErrorCode PetscSNPrintfCount(363,10916
+PrintfQueue petsc_printfqueue 375,11260
+int petsc_printfqueuelength 376,11328
+PetscErrorCode PetscSynchronizedPrintf(401,12267
+PetscErrorCode PetscSynchronizedFPrintf(467,14440
+PetscErrorCode PetscSynchronizedFlush(534,16821
+PetscErrorCode PetscFPrintf(600,19201
+PetscErrorCode PetscPrintf(642,20554
+PetscErrorCode PetscHelpPrintfDefault(662,21145
+PetscErrorCode PetscSynchronizedFGets(702,22349
+PetscErrorCode PetscFormatStrip(730,23020
+PetscErrorCode PetscFormatRealArray(745,23399
+
+src/sys/fileio/ghome.c,86
+ghome.c:^?ghome.c^A,1
+PetscErrorCode PetscGetHomeDirectory(27,575
+PetscErrorCode PetscFixFilename(56,1241
+
+src/sys/fileio/apple_fdir.h,399
+apple_fdir.h:^?apple_fdir.h^A,1
+#define ALLOWED_MKOSTEMP_FLAGS 20,428
+ FTPP_DONE,25,544
+ FTPP_TRY_NEXT,26,557
+ FTPP_ERROR27,574
+} find_temp_path_progress_t;28,587
+typedef find_temp_path_progress_t (*find_temp_path_action_t)find_temp_path_action_t37,882
+static find_temp_path_progress_t _mkdtemp_action(41,1140
+static const char padchar[padchar47,1387
+static int find_temp_path(49,1484
+char *mkdtemp(mkdtemp145,3774
src/sys/fileio/mpiuopen.c,292
mpiuopen.c:^?mpiuopen.c^A,1
@@ -20864,11 +20882,6 @@
#define PETSC_DESIRE_FEATURE_TEST_MACROS 1,0
PetscErrorCode PetscGetRealPath(42,1063
-src/sys/fileio/ghome.c,86
-ghome.c:^?ghome.c^A,1
-PetscErrorCode PetscGetHomeDirectory(27,574
-PetscErrorCode PetscFixFilename(56,1240
-
src/sys/fileio/fwd.c,48
fwd.c:^?fwd.c^A,1
PetscErrorCode PetscGetWorkingDirectory(40,836
@@ -20903,19 +20916,6 @@
PetscErrorCode PetscRMTree(95,2869
PetscErrorCode PetscRMTree(135,4325
-src/sys/fileio/apple_fdir.h,399
-apple_fdir.h:^?apple_fdir.h^A,1
-#define ALLOWED_MKOSTEMP_FLAGS 20,428
- FTPP_DONE,25,544
- FTPP_TRY_NEXT,26,557
- FTPP_ERROR27,574
-} find_temp_path_progress_t;28,587
-typedef find_temp_path_progress_t (*find_temp_path_action_t)find_temp_path_action_t37,881
-static find_temp_path_progress_t _mkdtemp_action(41,1139
-static const char padchar[padchar47,1386
-static int find_temp_path(49,1483
-char *mkdtemp(mkdtemp145,3773
-
src/sys/fileio/ftn-custom/makefile,85
makefile:^?makefile^A,1
SOURCEC 4,73
@@ -21462,59 +21462,59 @@
subroutine PetscDrawSetViewPort(264,8878
subroutine PetscDrawGetViewPort(272,9151
subroutine PetscDrawSplitViewPort(280,9424
- subroutine PetscDrawAxisCreate(284,9569
- subroutine PetscDrawAxisDestroy(289,9749
- subroutine PetscDrawAxisSetColors(293,9898
- subroutine PetscDrawAxisSetLimits(300,10126
- subroutine PetscDrawAxisGetLimits(308,10411
- subroutine PetscDrawAxisSetHoldLimits(316,10696
- subroutine PetscDrawAxisDraw(321,10890
- subroutine PetscDrawBarDraw(325,11033
- subroutine PetscDrawBarSave(329,11172
- subroutine PetscDrawBarSetColor(333,11311
- subroutine PetscDrawBarSort(338,11483
- subroutine PetscDrawBarSetLimits(344,11688
- subroutine PetscDrawBarSetFromOptions(350,11903
- subroutine PetscDrawSPSetDimension(354,12062
- subroutine PetscDrawSPGetDimension(359,12238
- subroutine PetscDrawSPReset(364,12414
- subroutine PetscDrawSPDestroy(368,12551
- subroutine PetscDrawSPAddPoint(372,12692
- subroutine PetscDrawSPAddPointColorized(378,12901
- subroutine PetscDrawSPDraw(385,13161
- subroutine PetscDrawSPSave(390,13329
- subroutine PetscDrawSPSetLimits(394,13464
- subroutine PetscDrawSPGetAxis(402,13741
- subroutine PetscDrawSPGetDraw(407,13923
- subroutine PetscDrawHGSetNumberBins(412,14097
- subroutine PetscDrawHGReset(417,14275
- subroutine PetscDrawHGAddValue(421,14412
- subroutine PetscDrawHGDraw(426,14588
- subroutine PetscDrawHGSave(430,14723
- subroutine PetscDrawHGView(434,14858
- subroutine PetscDrawHGSetColor(440,15057
- subroutine PetscDrawHGSetLimits(445,15225
- subroutine PetscDrawHGCalcStats(453,15486
- subroutine PetscDrawHGIntegerBins(458,15664
- subroutine PetscDrawLGAddCommonPoint(463,15846
- subroutine PetscDrawLGAddPoint(469,16067
- subroutine PetscDrawLGGetAxis(475,16276
- subroutine PetscDrawLGGetDraw(480,16458
- subroutine PetscDrawLGSPDraw(485,16632
- subroutine PetscDrawLGCreate(490,16808
- subroutine PetscDrawLGSetColors(496,17011
- subroutine PetscDrawLGGetDimension(501,17185
- subroutine PetscDrawLGSetDimension(506,17367
- subroutine PetscDrawLGSetLimits(511,17549
- subroutine PetscDrawLGReset(519,17826
- subroutine PetscDrawLGDestroy(523,17963
- subroutine PetscDrawLGSetUseMarkers(527,18104
- subroutine PetscDrawLGDraw(532,18290
- subroutine PetscDrawLGSave(536,18425
- subroutine PetscDrawLGView(540,18560
- subroutine PetscDrawLGSetFromOptions(546,18759
+ subroutine PetscDrawBarDraw(284,9569
+ subroutine PetscDrawBarSave(288,9708
+ subroutine PetscDrawBarSetColor(292,9847
+ subroutine PetscDrawBarSort(297,10019
+ subroutine PetscDrawBarSetLimits(303,10224
+ subroutine PetscDrawBarSetFromOptions(309,10439
+ subroutine PetscDrawSPSetDimension(313,10598
+ subroutine PetscDrawSPGetDimension(318,10774
+ subroutine PetscDrawSPReset(323,10950
+ subroutine PetscDrawSPDestroy(327,11087
+ subroutine PetscDrawSPAddPoint(331,11228
+ subroutine PetscDrawSPAddPointColorized(337,11437
+ subroutine PetscDrawSPDraw(344,11697
+ subroutine PetscDrawSPSave(349,11865
+ subroutine PetscDrawSPSetLimits(353,12000
+ subroutine PetscDrawSPGetAxis(361,12277
+ subroutine PetscDrawSPGetDraw(366,12459
+ subroutine PetscDrawHGSetNumberBins(371,12633
+ subroutine PetscDrawHGReset(376,12811
+ subroutine PetscDrawHGAddValue(380,12948
+ subroutine PetscDrawHGDraw(385,13124
+ subroutine PetscDrawHGSave(389,13259
+ subroutine PetscDrawHGView(393,13394
+ subroutine PetscDrawHGSetColor(399,13593
+ subroutine PetscDrawHGSetLimits(404,13761
+ subroutine PetscDrawHGCalcStats(412,14022
+ subroutine PetscDrawHGIntegerBins(417,14200
+ subroutine PetscDrawLGAddCommonPoint(422,14382
+ subroutine PetscDrawLGAddPoint(428,14603
+ subroutine PetscDrawLGGetAxis(434,14812
+ subroutine PetscDrawLGGetDraw(439,14994
+ subroutine PetscDrawLGSPDraw(444,15168
+ subroutine PetscDrawLGCreate(449,15344
+ subroutine PetscDrawLGSetColors(455,15547
+ subroutine PetscDrawLGGetDimension(460,15721
+ subroutine PetscDrawLGSetDimension(465,15903
+ subroutine PetscDrawLGSetLimits(470,16085
+ subroutine PetscDrawLGReset(478,16362
+ subroutine PetscDrawLGDestroy(482,16499
+ subroutine PetscDrawLGSetUseMarkers(486,16640
+ subroutine PetscDrawLGDraw(491,16826
+ subroutine PetscDrawLGSave(495,16961
+ subroutine PetscDrawLGView(499,17096
+ subroutine PetscDrawLGSetFromOptions(505,17295
+ subroutine PetscDrawAxisCreate(509,17450
+ subroutine PetscDrawAxisDestroy(514,17630
+ subroutine PetscDrawAxisSetColors(518,17779
+ subroutine PetscDrawAxisSetLimits(525,18007
+ subroutine PetscDrawAxisGetLimits(533,18292
+ subroutine PetscDrawAxisSetHoldLimits(541,18577
+ subroutine PetscDrawAxisDraw(546,18771
-src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90,6072
+src/sys/f90-mod/ftn-auto-interfaces/petscsys.h90,6073
petscsys.h90:^?petscsys.h90^A,1
subroutine PetscBagSetFromOptions(1,0
subroutine PetscMatlabEngineDestroy(5,143
@@ -21562,29 +21562,29 @@
subroutine PetscObjectGetClassId(199,7250
subroutine PetscObjectGetId(204,7436
subroutine PetscObjectCompareId(209,7614
- subroutine PetscObjectSetPrintedOptions(215,7833
- subroutine PetscObjectInheritPrintedOptions(219,7994
- subroutine PetscObjectSetFromOptions(224,8200
- subroutine PetscObjectSetUp(228,8355
- subroutine PetscInitialized(232,8492
- subroutine PetscFinalized(236,8625
- subroutine PetscSubcommSetFromOptions(240,8754
- subroutine PetscSubcommSetNumber(245,8941
- subroutine PetscSubcommSetType(251,9149
- subroutine PetscSubcommSetTypeGeneral(257,9369
- subroutine PetscSubcommDestroy(264,9630
- subroutine PetscSubcommCreate(269,9803
- subroutine PetscCommGetNewTag(275,10005
- subroutine PetscObjectDestroy(280,10177
- subroutine PetscObjectGetTabLevel(284,10318
- subroutine PetscObjectSetTabLevel(289,10498
- subroutine PetscObjectIncrementTabLevel(294,10678
- subroutine PetscOptionsCreate(300,10907
- subroutine PetscOptionsDestroy(305,11078
- subroutine PetscOptionsPush(310,11251
- subroutine PetscOptionsPop(315,11418
- subroutine PetscOptionsAllUsed(318,11516
- subroutine PetscOptionsLeft(324,11720
+ subroutine PetscSubcommSetFromOptions(215,7833
+ subroutine PetscSubcommSetNumber(220,8020
+ subroutine PetscSubcommSetType(226,8228
+ subroutine PetscSubcommSetTypeGeneral(232,8448
+ subroutine PetscSubcommDestroy(239,8709
+ subroutine PetscSubcommCreate(244,8882
+ subroutine PetscCommGetNewTag(250,9084
+ subroutine PetscObjectGetTabLevel(255,9256
+ subroutine PetscObjectSetTabLevel(260,9436
+ subroutine PetscObjectIncrementTabLevel(265,9616
+ subroutine PetscOptionsCreate(271,9845
+ subroutine PetscOptionsDestroy(276,10016
+ subroutine PetscOptionsPush(281,10189
+ subroutine PetscOptionsPop(286,10356
+ subroutine PetscOptionsAllUsed(289,10454
+ subroutine PetscOptionsLeft(295,10658
+ subroutine PetscObjectDestroy(300,10825
+ subroutine PetscObjectSetPrintedOptions(304,10966
+ subroutine PetscObjectInheritPrintedOptions(308,11127
+ subroutine PetscObjectSetFromOptions(313,11333
+ subroutine PetscObjectSetUp(317,11488
+ subroutine PetscInitialized(321,11625
+ subroutine PetscFinalized(325,11758
subroutine PetscElementalInitializePackage(329,11887
subroutine PetscElementalInitialized(332,12017
subroutine PetscElementalFinalizePackage(336,12168
@@ -21592,52 +21592,52 @@
subroutine PetscCommBuildTwoSidedSetType(343,12435
subroutine PetscCommBuildTwoSidedGetType(348,12651
subroutine PetscSleep(353,12867
- subroutine PetscSplitOwnershipBlock(357,12988
- subroutine PetscSplitOwnership(364,13228
- subroutine PetscSplitOwnershipEqual(370,13427
- subroutine PetscSortedReal(376,13636
- subroutine PetscSortReal(382,13835
- subroutine PetscSortRealWithArrayInt(387,13997
- subroutine PetscFindReal(393,14218
- subroutine PetscSortRemoveDupsReal(401,14477
- subroutine PetscSortSplit(406,14659
- subroutine PetscSortSplitReal(413,14893
- subroutine PetscSortedInt(420,15131
- subroutine PetscSortedInt64(426,15326
- subroutine PetscSortInt(432,15529
- subroutine PetscSortInt64(437,15687
- subroutine PetscSortCount(442,15853
- subroutine PetscSortReverseInt(447,16019
- subroutine PetscSortedRemoveDupsInt(452,16191
- subroutine PetscSortedCheckDupsInt(457,16373
- subroutine PetscSortRemoveDupsInt(463,16586
- subroutine PetscFindInt(468,16764
- subroutine PetscCheckDupsInt(475,16984
- subroutine PetscFindMPIInt(481,17185
- subroutine PetscSortIntWithArray(488,17423
- subroutine PetscSortIntWithArrayPair(494,17634
- subroutine PetscSortIntWithCountArray(501,17888
- subroutine PetscSortIntWithIntCountArrayPair(507,18117
- subroutine PetscSortedMPIInt(514,18395
- subroutine PetscSortMPIInt(520,18602
- subroutine PetscSortRemoveDupsMPIInt(525,18772
- subroutine PetscSortMPIIntWithArray(530,18962
- subroutine PetscSortMPIIntWithIntArray(536,19197
- subroutine PetscSortIntWithScalarArray(542,19432
- subroutine PetscMergeIntArray(548,19661
- subroutine PetscMergeIntArrayPair(557,19959
- subroutine PetscMergeMPIIntArray(569,20366
- subroutine PetscParallelSortedInt(578,20688
- subroutine PetscSortIntWithPermutation(585,20930
- subroutine PetscSortRealWithPermutation(591,21153
- subroutine PetscIntSortSemiOrdered(597,21380
- subroutine PetscIntSortSemiOrderedWithArray(602,21560
- subroutine PetscMPIIntSortSemiOrdered(608,21793
- subroutine PetscMPIIntSortSemiOrderedWithArray(613,21985
- subroutine PetscRealSortSemiOrdered(619,22236
- subroutine PetscRealSortSemiOrderedWithArrayInt(624,22420
- subroutine PetscSequentialPhaseBegin(630,22663
- subroutine PetscSequentialPhaseEnd(635,22837
+ subroutine PetscSortedReal(357,12988
+ subroutine PetscSortReal(363,13187
+ subroutine PetscSortRealWithArrayInt(368,13349
+ subroutine PetscFindReal(374,13570
+ subroutine PetscSortRemoveDupsReal(382,13829
+ subroutine PetscSortSplit(387,14011
+ subroutine PetscSortSplitReal(394,14245
+ subroutine PetscSortIntWithPermutation(401,14483
+ subroutine PetscSortRealWithPermutation(407,14706
+ subroutine PetscIntSortSemiOrdered(413,14933
+ subroutine PetscIntSortSemiOrderedWithArray(418,15113
+ subroutine PetscMPIIntSortSemiOrdered(424,15346
+ subroutine PetscMPIIntSortSemiOrderedWithArray(429,15538
+ subroutine PetscRealSortSemiOrdered(435,15789
+ subroutine PetscRealSortSemiOrderedWithArrayInt(440,15973
+ subroutine PetscSequentialPhaseBegin(446,16216
+ subroutine PetscSequentialPhaseEnd(451,16390
+ subroutine PetscSplitOwnershipBlock(456,16560
+ subroutine PetscSplitOwnership(463,16800
+ subroutine PetscSplitOwnershipEqual(469,16999
+ subroutine PetscSortedInt(475,17208
+ subroutine PetscSortedInt64(481,17403
+ subroutine PetscSortInt(487,17606
+ subroutine PetscSortInt64(492,17764
+ subroutine PetscSortCount(497,17930
+ subroutine PetscSortReverseInt(502,18096
+ subroutine PetscSortedRemoveDupsInt(507,18268
+ subroutine PetscSortedCheckDupsInt(512,18450
+ subroutine PetscSortRemoveDupsInt(518,18663
+ subroutine PetscFindInt(523,18841
+ subroutine PetscCheckDupsInt(530,19061
+ subroutine PetscFindMPIInt(536,19262
+ subroutine PetscSortIntWithArray(543,19500
+ subroutine PetscSortIntWithArrayPair(549,19711
+ subroutine PetscSortIntWithCountArray(556,19965
+ subroutine PetscSortIntWithIntCountArrayPair(562,20194
+ subroutine PetscSortedMPIInt(569,20472
+ subroutine PetscSortMPIInt(575,20679
+ subroutine PetscSortRemoveDupsMPIInt(580,20849
+ subroutine PetscSortMPIIntWithArray(585,21039
+ subroutine PetscSortMPIIntWithIntArray(591,21274
+ subroutine PetscSortIntWithScalarArray(597,21509
+ subroutine PetscMergeIntArray(603,21738
+ subroutine PetscMergeIntArrayPair(612,22036
+ subroutine PetscMergeMPIIntArray(624,22443
+ subroutine PetscParallelSortedInt(633,22765
src/sys/error/err.c,1291
err.c:^?err.c^A,1
@@ -21877,9 +21877,9 @@
PetscErrorCode PetscDLLibraryOpen(123,3812
#define PETSC_USE_NONEXECUTABLE_SO142,4631
PetscErrorCode PetscDLLibrarySym(213,7405
-PetscErrorCode PetscDLLibraryAppend(315,10642
-PetscErrorCode PetscDLLibraryPrepend(397,13247
-PetscErrorCode PetscDLLibraryClose(479,15878
+PetscErrorCode PetscDLLibraryAppend(315,10643
+PetscErrorCode PetscDLLibraryPrepend(397,13248
+PetscErrorCode PetscDLLibraryClose(479,15879
src/sys/dll/dlimpl.c,423
dlimpl.c:^?dlimpl.c^A,1
@@ -22206,19 +22206,19 @@
src/sys/classes/viewer/impls/vtk/vtkv.c,658
vtkv.c:^?vtkv.c^A,1
-PetscErrorCode PetscViewerVTKAddField(40,1328
-PetscErrorCode PetscViewerVTKGetDM(63,2389
-static PetscErrorCode PetscViewerDestroy_VTK(71,2670
-static PetscErrorCode PetscViewerFlush_VTK(87,3488
-PetscErrorCode PetscViewerFileSetName_VTK(106,4152
-PetscErrorCode PetscViewerFileGetName_VTK(141,6403
-PetscErrorCode PetscViewerFileSetMode_VTK(149,6620
-PetscErrorCode PetscViewerFileGetMode_VTK(158,6835
-PetscErrorCode PetscViewerVTKAddField_VTK(167,7052
-PetscErrorCode PetscViewerVTKGetDM_VTK(193,8078
-PETSC_EXTERN PetscErrorCode PetscViewerCreate_VTK(213,8957
-PetscErrorCode PetscViewerVTKOpen(257,10747
-PetscErrorCode PetscViewerVTKFWrite(286,11746
+PetscErrorCode PetscViewerVTKAddField(40,1329
+PetscErrorCode PetscViewerVTKGetDM(63,2390
+static PetscErrorCode PetscViewerDestroy_VTK(71,2671
+static PetscErrorCode PetscViewerFlush_VTK(87,3489
+PetscErrorCode PetscViewerFileSetName_VTK(106,4153
+PetscErrorCode PetscViewerFileGetName_VTK(141,6404
+PetscErrorCode PetscViewerFileSetMode_VTK(149,6621
+PetscErrorCode PetscViewerFileGetMode_VTK(158,6836
+PetscErrorCode PetscViewerVTKAddField_VTK(167,7053
+PetscErrorCode PetscViewerVTKGetDM_VTK(193,8079
+PETSC_EXTERN PetscErrorCode PetscViewerCreate_VTK(213,8958
+PetscErrorCode PetscViewerVTKOpen(257,10748
+PetscErrorCode PetscViewerVTKFWrite(286,11747
src/sys/classes/viewer/impls/vtk/vtkvimpl.h,956
vtkvimpl.h:^?vtkvimpl.h^A,1
@@ -22570,35 +22570,35 @@
PetscErrorCode PetscViewerHDF5SetDefaultTimestepping(503,19571
PetscErrorCode PetscViewerHDF5GetDefaultTimestepping(526,20332
PETSC_EXTERN PetscErrorCode PetscViewerCreate_HDF5(545,21300
-PetscErrorCode PetscViewerHDF5Open(622,25441
-PetscErrorCode PetscViewerHDF5GetFileId(648,26173
-PetscErrorCode PetscViewerHDF5PushGroup(689,27650
-PetscErrorCode PetscViewerHDF5PopGroup(740,29308
-PetscErrorCode PetscViewerHDF5GetGroup_Internal(755,29867
-PetscErrorCode PetscViewerHDF5OpenGroup(792,31200
-PetscErrorCode PetscViewerHDF5WriteGroup(836,33201
-PetscErrorCode PetscViewerHDF5PushTimestepping(871,34887
-PetscErrorCode PetscViewerHDF5PopTimestepping(898,35882
-PetscErrorCode PetscViewerHDF5IsTimestepping(927,36926
-PetscErrorCode PetscViewerHDF5IncrementTimestep(952,37749
-PetscErrorCode PetscViewerHDF5SetTimestep(979,38764
-PetscErrorCode PetscViewerHDF5GetTimestep(1010,40019
-PetscErrorCode PetscDataTypeToHDF5DataType(1037,40877
-PetscErrorCode PetscHDF5DataTypeToPetscDataType(1074,42163
-PetscErrorCode PetscViewerHDF5WriteAttribute(1114,43771
-PetscErrorCode PetscViewerHDF5WriteObjectAttribute(1173,46364
-PetscErrorCode PetscViewerHDF5ReadAttribute(1216,48290
-PetscErrorCode PetscViewerHDF5ReadObjectAttribute(1290,51490
-static inline PetscErrorCode PetscViewerHDF5Traverse_Inner_Internal(1302,52027
-static PetscErrorCode PetscViewerHDF5Traverse_Internal(1319,52634
-PetscErrorCode PetscViewerHDF5HasGroup(1400,55410
-PetscErrorCode PetscViewerHDF5HasDataset(1439,56753
-PetscErrorCode PetscViewerHDF5HasObject(1476,58020
-PetscErrorCode PetscViewerHDF5HasAttribute(1510,59274
-PetscErrorCode PetscViewerHDF5HasObjectAttribute(1547,60880
-static PetscErrorCode PetscViewerHDF5HasAttribute_Internal(1559,61350
-PetscMPIInt Petsc_Viewer_HDF5_keyval 1575,61908
-PetscViewer PETSC_VIEWER_HDF5_(1600,62700
+PetscErrorCode PetscViewerHDF5Open(622,25442
+PetscErrorCode PetscViewerHDF5GetFileId(648,26174
+PetscErrorCode PetscViewerHDF5PushGroup(689,27651
+PetscErrorCode PetscViewerHDF5PopGroup(740,29309
+PetscErrorCode PetscViewerHDF5GetGroup_Internal(755,29868
+PetscErrorCode PetscViewerHDF5OpenGroup(792,31201
+PetscErrorCode PetscViewerHDF5WriteGroup(836,33202
+PetscErrorCode PetscViewerHDF5PushTimestepping(871,34888
+PetscErrorCode PetscViewerHDF5PopTimestepping(898,35883
+PetscErrorCode PetscViewerHDF5IsTimestepping(927,36927
+PetscErrorCode PetscViewerHDF5IncrementTimestep(952,37750
+PetscErrorCode PetscViewerHDF5SetTimestep(979,38765
+PetscErrorCode PetscViewerHDF5GetTimestep(1010,40020
+PetscErrorCode PetscDataTypeToHDF5DataType(1037,40878
+PetscErrorCode PetscHDF5DataTypeToPetscDataType(1074,42164
+PetscErrorCode PetscViewerHDF5WriteAttribute(1114,43772
+PetscErrorCode PetscViewerHDF5WriteObjectAttribute(1173,46365
+PetscErrorCode PetscViewerHDF5ReadAttribute(1216,48291
+PetscErrorCode PetscViewerHDF5ReadObjectAttribute(1290,51491
+static inline PetscErrorCode PetscViewerHDF5Traverse_Inner_Internal(1302,52028
+static PetscErrorCode PetscViewerHDF5Traverse_Internal(1319,52635
+PetscErrorCode PetscViewerHDF5HasGroup(1400,55411
+PetscErrorCode PetscViewerHDF5HasDataset(1439,56754
+PetscErrorCode PetscViewerHDF5HasObject(1476,58021
+PetscErrorCode PetscViewerHDF5HasAttribute(1510,59275
+PetscErrorCode PetscViewerHDF5HasObjectAttribute(1547,60881
+static PetscErrorCode PetscViewerHDF5HasAttribute_Internal(1559,61351
+PetscMPIInt Petsc_Viewer_HDF5_keyval 1575,61909
+PetscViewer PETSC_VIEWER_HDF5_(1600,62701
src/sys/classes/viewer/impls/hdf5/makefile,133
makefile:^?makefile^A,1
@@ -22667,33 +22667,33 @@
static PetscErrorCode PetscViewerGLVisInfoDestroy_Private(172,8495
static PetscErrorCode PetscViewerGLVisAttachInfo_Private(183,8812
static PetscErrorCode PetscViewerGLVisGetNewWindow_Private(211,10008
-PetscErrorCode PetscViewerGLVisPause_Private(230,10749
-PetscErrorCode PetscViewerGLVisSetDM_Private(240,11062
-PetscErrorCode PetscViewerGLVisGetDMWindow_Private(259,11817
-PetscErrorCode PetscViewerGLVisRestoreDMWindow_Private(291,13148
-PetscErrorCode PetscViewerGLVisGetType_Private(311,13986
-PetscErrorCode PetscViewerGLVisGetStatus_Private(322,14447
-PetscErrorCode PetscViewerGLVisGetDM_Private(344,15248
-PetscErrorCode PetscViewerGLVisGetFields_Private(353,15464
-PetscErrorCode PetscViewerGLVisGetWindow_Private(371,16288
-PetscErrorCode PetscViewerGLVisRestoreWindow_Private(427,19039
-PetscErrorCode PetscViewerGLVisInitWindow_Private(451,20301
-static PetscErrorCode PetscViewerDestroy_GLVis(512,22833
-static PetscErrorCode PetscViewerSetFromOptions_GLVis(540,24126
-static PetscErrorCode PetscViewerFileSetName_GLVis(559,25318
-PetscErrorCode PetscViewerGLVisOpen(614,27397
-PetscViewer PETSC_VIEWER_GLVIS_(656,29060
-PETSC_EXTERN PetscErrorCode PetscViewerCreate_GLVis(713,31270
-static PetscErrorCode PetscViewerDestroy_ASCII_Socket(752,32823
-static PetscErrorCode PetscViewerASCIISocketOpen(775,33745
- #define PETSC_DEVNULL 825,35766
- #define PETSC_DEVNULL 827,35806
-static volatile PetscBool PetscGLVisBrokenPipe 830,35854
-static void PetscGLVisSigHandler_SIGPIPE(834,35972
-PetscErrorCode PetscGLVisCollectiveBegin(842,36152
-PetscErrorCode PetscGLVisCollectiveEnd(851,36533
-PetscErrorCode PetscGLVisCollectiveBegin(873,37193
-PetscErrorCode PetscGLVisCollectiveEnd(879,37346
+PetscErrorCode PetscViewerGLVisPause_Private(230,10748
+PetscErrorCode PetscViewerGLVisSetDM_Private(240,11061
+PetscErrorCode PetscViewerGLVisGetDMWindow_Private(259,11816
+PetscErrorCode PetscViewerGLVisRestoreDMWindow_Private(291,13147
+PetscErrorCode PetscViewerGLVisGetType_Private(311,13985
+PetscErrorCode PetscViewerGLVisGetStatus_Private(322,14446
+PetscErrorCode PetscViewerGLVisGetDM_Private(344,15247
+PetscErrorCode PetscViewerGLVisGetFields_Private(353,15463
+PetscErrorCode PetscViewerGLVisGetWindow_Private(371,16287
+PetscErrorCode PetscViewerGLVisRestoreWindow_Private(427,19038
+PetscErrorCode PetscViewerGLVisInitWindow_Private(451,20300
+static PetscErrorCode PetscViewerDestroy_GLVis(512,22832
+static PetscErrorCode PetscViewerSetFromOptions_GLVis(540,24125
+static PetscErrorCode PetscViewerFileSetName_GLVis(559,25317
+PetscErrorCode PetscViewerGLVisOpen(614,27396
+PetscViewer PETSC_VIEWER_GLVIS_(656,29059
+PETSC_EXTERN PetscErrorCode PetscViewerCreate_GLVis(713,31269
+static PetscErrorCode PetscViewerDestroy_ASCII_Socket(752,32822
+static PetscErrorCode PetscViewerASCIISocketOpen(775,33744
+ #define PETSC_DEVNULL 825,35765
+ #define PETSC_DEVNULL 827,35805
+static volatile PetscBool PetscGLVisBrokenPipe 830,35853
+static void PetscGLVisSigHandler_SIGPIPE(834,35971
+PetscErrorCode PetscGLVisCollectiveBegin(842,36151
+PetscErrorCode PetscGLVisCollectiveEnd(851,36532
+PetscErrorCode PetscGLVisCollectiveBegin(873,37192
+PetscErrorCode PetscGLVisCollectiveEnd(879,37345
src/sys/classes/viewer/impls/glvis/makefile,114
makefile:^?makefile^A,1
@@ -23100,11 +23100,6 @@
static char help[help2,1
int main(12,301
-src/sys/classes/random/tests/makefile,26
-makefile:^?makefile^A,1
-LOCDIR 3,37
-MANSEC 4,85
-
src/sys/classes/random/tests/ex3.c,134
ex3.c:^?ex3.c^A,1
static char help[help2,1
@@ -23112,14 +23107,10 @@
static PetscErrorCode PoissonTailProbability(21,515
int main(41,957
-src/sys/classes/random/interface/randreg.c,272
-randreg.c:^?randreg.c^A,1
-PetscFunctionList PetscRandomList 4,61
-PetscBool PetscRandomRegisterAllCalled 5,116
-PetscErrorCode PetscRandomSetType(28,739
-PetscErrorCode PetscRandomGetType(66,1745
-PetscErrorCode PetscRandomRegister(108,2932
-PetscErrorCode PetscRandomRegisterAll(142,4007
+src/sys/classes/random/tests/makefile,26
+makefile:^?makefile^A,1
+LOCDIR 3,37
+MANSEC 4,85
src/sys/classes/random/interface/randomc.c,470
randomc.c:^?randomc.c^A,1
@@ -23131,8 +23122,17 @@
PetscErrorCode PetscRandomSetFromOptions(162,4493
PetscErrorCode PetscRandomViewFromOptions(216,6258
PetscErrorCode PetscRandomView(245,7158
-PetscErrorCode PetscRandomCreate(330,10257
-PetscErrorCode PetscRandomSeed(376,11444
+PetscErrorCode PetscRandomCreate(329,10257
+PetscErrorCode PetscRandomSeed(375,11444
+
+src/sys/classes/random/interface/randreg.c,272
+randreg.c:^?randreg.c^A,1
+PetscFunctionList PetscRandomList 4,61
+PetscBool PetscRandomRegisterAllCalled 5,116
+PetscErrorCode PetscRandomSetType(28,739
+PetscErrorCode PetscRandomGetType(66,1745
+PetscErrorCode PetscRandomRegister(108,2932
+PetscErrorCode PetscRandomRegisterAll(142,4007
src/sys/classes/random/interface/random.c,284
random.c:^?random.c^A,1
@@ -23196,7 +23196,7 @@
PetscErrorCode PetscRandomGetValue_Sprng(17,268
PetscErrorCode PetscRandomGetValueReal_Sprng(33,737
static struct _PetscRandomOps PetscRandomOps_Values 46,1088
-PETSC_EXTERN PetscErrorCode PetscRandomCreate_Sprng(70,1928
+PETSC_EXTERN PetscErrorCode PetscRandomCreate_Sprng(70,1926
src/sys/classes/random/impls/sprng/makefile,115
makefile:^?makefile^A,1
@@ -23404,6 +23404,25 @@
MANSEC 9,282
SUBMANSEC 10,298
+src/sys/classes/draw/utils/axisc.c,732
+axisc.c:^?axisc.c^A,1
+#define PETSC_DRAW_AXIS_MAX_SEGMENTS 3,62
+PetscClassId PETSC_DRAWAXIS_CLASSID 4,102
+PetscErrorCode PetscDrawAxisCreate(27,1090
+PetscErrorCode PetscDrawAxisDestroy(67,2117
+PetscErrorCode PetscDrawAxisSetColors(101,3105
+PetscErrorCode PetscDrawAxisSetLabels(133,4024
+PetscErrorCode PetscDrawAxisSetLimits(163,4989
+PetscErrorCode PetscDrawAxisGetLimits(190,5870
+PetscErrorCode PetscDrawAxisSetHoldLimits(219,6871
+PetscErrorCode PetscDrawAxisDraw(246,7678
+PetscErrorCode PetscStripe0(386,13080
+PetscErrorCode PetscStripAllZeros(412,13599
+PetscErrorCode PetscStripTrailingZeros(430,13935
+PetscErrorCode PetscStripInitialZero(461,14685
+PetscErrorCode PetscStripZeros(478,15075
+PetscErrorCode PetscStripZerosPlus(498,15538
+
src/sys/classes/draw/utils/lgc.c,816
lgc.c:^?lgc.c^A,1
PetscClassId PETSC_DRAWLG_CLASSID 4,87
@@ -23501,25 +23520,6 @@
PetscErrorCode PetscDrawBarGetDraw(357,10912
PetscErrorCode PetscDrawBarSetFromOptions(381,11571
-src/sys/classes/draw/utils/axisc.c,732
-axisc.c:^?axisc.c^A,1
-#define PETSC_DRAW_AXIS_MAX_SEGMENTS 3,62
-PetscClassId PETSC_DRAWAXIS_CLASSID 4,102
-PetscErrorCode PetscDrawAxisCreate(27,1090
-PetscErrorCode PetscDrawAxisDestroy(67,2117
-PetscErrorCode PetscDrawAxisSetColors(101,3105
-PetscErrorCode PetscDrawAxisSetLabels(133,4024
-PetscErrorCode PetscDrawAxisSetLimits(163,4989
-PetscErrorCode PetscDrawAxisGetLimits(190,5870
-PetscErrorCode PetscDrawAxisSetHoldLimits(219,6871
-PetscErrorCode PetscDrawAxisDraw(246,7678
-PetscErrorCode PetscStripe0(386,13081
-PetscErrorCode PetscStripAllZeros(412,13600
-PetscErrorCode PetscStripTrailingZeros(430,13936
-PetscErrorCode PetscStripInitialZero(461,14686
-PetscErrorCode PetscStripZeros(478,15076
-PetscErrorCode PetscStripZerosPlus(498,15539
-
src/sys/classes/draw/utils/zoom.c,37
zoom.c:^?zoom.c^A,1
PetscErrorCode PetscDrawZoom(18,431
@@ -23928,19 +23928,6 @@
PetscErrorCode PetscDrawInterpolatedTriangle_X(11,269
#define SWAP(32,1031
-src/sys/classes/draw/impls/x/xtext.c,350
-xtext.c:^?xtext.c^A,1
-PetscErrorCode PetscDrawXiFontFixed(20,641
-#define NFONTS 36,1110
- int w,38,1144
- int w, h,38,1144
- int w, h, descent;38,1144
-} nfonts[nfonts39,1165
-static int act_nfonts 40,1183
-static PetscErrorCode PetscDrawXiLoadFont(47,1321
-static PetscErrorCode PetscDrawXiInitFonts(73,2243
-static PetscErrorCode PetscDrawXiMatchFontSize(120,3707
-
src/sys/classes/draw/impls/x/xops.c,1671
xops.c:^?xops.c^A,1
#define XTRANS(10,241
@@ -23977,6 +23964,36 @@
static PetscErrorCode PetscDrawXGetDisplaySize_Private(612,23101
PETSC_EXTERN PetscErrorCode PetscDrawCreate_X(652,24707
+src/sys/classes/draw/impls/x/xcolor.c,703
+xcolor.c:^?xcolor.c^A,1
+static const char *colornames[colornames12,319
+static Colormap gColormap 34,1713
+static PetscDrawXiPixVal gCmapping[gCmapping35,1753
+static unsigned char gCpalette[gCpalette36,1810
+PetscErrorCode PetscDrawSetUpColormap_Shared(38,1871
+static PetscBool cmap_pixvalues_used[cmap_pixvalues_used85,3792
+static int cmap_base 86,3851
+PetscErrorCode PetscDrawSetUpColormap_Private(88,3884
+PetscErrorCode PetscDrawSetUpColormap_X(160,7064
+PetscErrorCode PetscDrawSetColormap_X(185,8196
+PetscErrorCode PetscDrawXiColormap(202,9057
+PetscErrorCode PetscDrawXiSetVisualClass(226,9711
+PetscErrorCode PetscDrawXiSetColormap(243,10303
+PetscErrorCode PetscDrawXiGetPalette(253,10527
+
+src/sys/classes/draw/impls/x/xtext.c,350
+xtext.c:^?xtext.c^A,1
+PetscErrorCode PetscDrawXiFontFixed(20,641
+#define NFONTS 36,1110
+ int w,38,1144
+ int w, h,38,1144
+ int w, h, descent;38,1144
+} nfonts[nfonts39,1165
+static int act_nfonts 40,1183
+static PetscErrorCode PetscDrawXiLoadFont(47,1321
+static PetscErrorCode PetscDrawXiInitFonts(73,2243
+static PetscErrorCode PetscDrawXiMatchFontSize(120,3707
+
src/sys/classes/draw/impls/x/xioerr.c,133
xioerr.c:^?xioerr.c^A,1
jmp_buf PetscXIOErrorHandlerJumpBuf;5,108
@@ -24043,23 +24060,6 @@
static inline int PetscDrawXiPixelToColor(44,1120
PetscErrorCode PetscDrawGetImage_X(60,1645
-src/sys/classes/draw/impls/x/xcolor.c,703
-xcolor.c:^?xcolor.c^A,1
-static const char *colornames[colornames12,319
-static Colormap gColormap 34,1713
-static PetscDrawXiPixVal gCmapping[gCmapping35,1753
-static unsigned char gCpalette[gCpalette36,1810
-PetscErrorCode PetscDrawSetUpColormap_Shared(38,1871
-static PetscBool cmap_pixvalues_used[cmap_pixvalues_used85,3792
-static int cmap_base 86,3851
-PetscErrorCode PetscDrawSetUpColormap_Private(88,3884
-PetscErrorCode PetscDrawSetUpColormap_X(160,7064
-PetscErrorCode PetscDrawSetColormap_X(185,8196
-PetscErrorCode PetscDrawXiColormap(202,9057
-PetscErrorCode PetscDrawXiSetVisualClass(226,9711
-PetscErrorCode PetscDrawXiSetColormap(243,10303
-PetscErrorCode PetscDrawXiGetPalette(253,10527
-
src/sys/classes/draw/impls/x/makefile,134
makefile:^?makefile^A,1
CPPFLAGS 4,72
@@ -24108,39 +24108,39 @@
unsigned char RedMap[RedMap33,1202
unsigned char GreenMap[GreenMap34,1375
unsigned char BlueMap[BlueMap35,1552
-static PetscErrorCode PetscDrawSetDoubleBuffer_Win32(48,2354
-static PetscErrorCode PetscDrawFlush_Win32(67,3242
-static PetscErrorCode deletemouselist_Win32(81,3783
-static PetscErrorCode PetscDrawGetMouseButton_Win32(98,4409
-static PetscErrorCode PetscDrawPause_Win32(143,6099
-static PetscErrorCode TranslateColor_Win32(150,6238
-static PetscErrorCode AverageColorRectangle_Win32(158,6533
-static PetscErrorCode AverageColorTriangle_Win32(167,7082
-static PetscErrorCode PetscDrawRectangle_Win32(176,7574
-static PetscErrorCode PetscDrawLine_Win32(204,8588
-static PetscErrorCode PetscDrawLineSetWidth_Win32(230,9488
-static PetscErrorCode PetscDrawLineGetWidth_Win32(246,10044
-static PetscErrorCode PetscDrawPoint_Win32(255,10284
-static PetscErrorCode PetscDrawPointSetSize_Win32(286,11412
-static PetscErrorCode PetscDrawString_Win32(301,11919
-static PetscErrorCode PetscDrawStringVertical_Win32(347,13390
-static PetscErrorCode PetscDrawStringSetSize_Win32(393,14943
-static PetscErrorCode PetscDrawStringGetSize_Win32(407,15488
-static PetscErrorCode PetscDrawResizeWindow_Win32(419,16047
-static PetscErrorCode PetscDrawCheckResizedWindow_Win32(437,16791
-static PetscErrorCode PetscDrawSetTitle_Win32(446,17106
-static PetscErrorCode PetscDrawClear_Win32(455,17341
-static PetscErrorCode PetscDrawTriangle_Win32(471,17913
-void PopMessageLoopThread_Win32(508,19174
-static PetscErrorCode PetscDrawDestroy_Win32(566,20877
-void MessageLoopThread_Win32(576,21125
-static struct _PetscDrawOps DvOps 622,22576
-static PetscErrorCode PetscDrawGetPopup_Win32(624,23222
-PETSC_EXTERN PetscErrorCode PetscDrawCreate_Win32(640,23827
-LRESULT CALLBACK PetscWndProc(703,26197
-static void OnPaint_Win32(736,26996
-static PetscErrorCode MouseRecord_Win32(763,27706
-static void OnDestroy_Win32(804,28909
+static PetscErrorCode PetscDrawSetDoubleBuffer_Win32(48,2355
+static PetscErrorCode PetscDrawFlush_Win32(67,3243
+static PetscErrorCode deletemouselist_Win32(81,3784
+static PetscErrorCode PetscDrawGetMouseButton_Win32(98,4410
+static PetscErrorCode PetscDrawPause_Win32(143,6100
+static PetscErrorCode TranslateColor_Win32(150,6239
+static PetscErrorCode AverageColorRectangle_Win32(158,6534
+static PetscErrorCode AverageColorTriangle_Win32(167,7083
+static PetscErrorCode PetscDrawRectangle_Win32(176,7575
+static PetscErrorCode PetscDrawLine_Win32(204,8589
+static PetscErrorCode PetscDrawLineSetWidth_Win32(230,9489
+static PetscErrorCode PetscDrawLineGetWidth_Win32(246,10045
+static PetscErrorCode PetscDrawPoint_Win32(255,10285
+static PetscErrorCode PetscDrawPointSetSize_Win32(286,11413
+static PetscErrorCode PetscDrawString_Win32(301,11920
+static PetscErrorCode PetscDrawStringVertical_Win32(347,13391
+static PetscErrorCode PetscDrawStringSetSize_Win32(393,14944
+static PetscErrorCode PetscDrawStringGetSize_Win32(407,15489
+static PetscErrorCode PetscDrawResizeWindow_Win32(419,16048
+static PetscErrorCode PetscDrawCheckResizedWindow_Win32(437,16792
+static PetscErrorCode PetscDrawSetTitle_Win32(446,17107
+static PetscErrorCode PetscDrawClear_Win32(455,17342
+static PetscErrorCode PetscDrawTriangle_Win32(471,17914
+void PopMessageLoopThread_Win32(508,19175
+static PetscErrorCode PetscDrawDestroy_Win32(566,20878
+void MessageLoopThread_Win32(576,21126
+static struct _PetscDrawOps DvOps 622,22577
+static PetscErrorCode PetscDrawGetPopup_Win32(624,23223
+PETSC_EXTERN PetscErrorCode PetscDrawCreate_Win32(640,23828
+LRESULT CALLBACK PetscWndProc(703,26198
+static void OnPaint_Win32(736,26997
+static PetscErrorCode MouseRecord_Win32(763,27707
+static void OnDestroy_Win32(804,28910
src/sys/classes/draw/impls/win32/win32draw.h,1499
win32draw.h:^?win32draw.h^A,1
@@ -24217,16 +24217,16 @@
#define XTRANS(68,2067
#define YTRANS(69,2223
static PetscErrorCode PetscDrawClear_TikZ(71,2380
-static PetscErrorCode PetscDrawLine_TikZ(86,3031
-static PetscErrorCode PetscDrawRectangle_TikZ(96,3487
-static PetscErrorCode PetscDrawTriangle_TikZ(106,4024
-static PetscErrorCode PetscDrawEllipse_TikZ(116,4591
-static PetscErrorCode PetscDrawString_TikZ(129,5269
-static PetscErrorCode PetscDrawStringVertical_TikZ(139,5699
-static PetscErrorCode PetscDrawStringBoxed_TikZ(157,6425
-static PetscErrorCode PetscDrawStringGetSize_TikZ(173,7069
-static struct _PetscDrawOps DvOps 181,7395
-PETSC_EXTERN PetscErrorCode PetscDrawCreate_TikZ(183,7834
+static PetscErrorCode PetscDrawLine_TikZ(86,3032
+static PetscErrorCode PetscDrawRectangle_TikZ(96,3488
+static PetscErrorCode PetscDrawTriangle_TikZ(106,4025
+static PetscErrorCode PetscDrawEllipse_TikZ(116,4592
+static PetscErrorCode PetscDrawString_TikZ(129,5270
+static PetscErrorCode PetscDrawStringVertical_TikZ(139,5700
+static PetscErrorCode PetscDrawStringBoxed_TikZ(157,6426
+static PetscErrorCode PetscDrawStringGetSize_TikZ(173,7070
+static struct _PetscDrawOps DvOps 181,7396
+PETSC_EXTERN PetscErrorCode PetscDrawCreate_TikZ(183,7835
src/sys/classes/draw/impls/tikz/makefile,113
makefile:^?makefile^A,1
@@ -24273,17 +24273,6 @@
PetscErrorCode PetscDrawOpenNull(190,6616
PetscErrorCode PetscDrawIsNull(213,7200
-src/sys/classes/draw/impls/image/makefile,115
-makefile:^?makefile^A,1
-SOURCEC 3,40
-SOURCEF 4,64
-SOURCEH 5,76
-MANSEC 6,100
-SUBMANSEC 7,116
-LIBBASE 8,133
-DIRS 9,157
-LOCDIR 10,169
-
src/sys/classes/draw/impls/image/drawimage.h,899
drawimage.h:^?drawimage.h^A,1
#define _PETSCIMAGE_H2,22
@@ -24304,10 +24293,21 @@
static inline void PetscImageDrawTriangle(109,3423
#define SWAP(130,4261
#undef SWAP152,4621
-#define PetscImageFontWidth 238,7259
-#define PetscImageFontHeight 239,7290
-static const unsigned char PetscImageFontBitmap[PetscImageFontBitmap240,7322
-static inline void PetscImageDrawText(339,14311
+#define PetscImageFontWidth 238,7260
+#define PetscImageFontHeight 239,7291
+static const unsigned char PetscImageFontBitmap[PetscImageFontBitmap240,7323
+static inline void PetscImageDrawText(339,14312
+
+src/sys/classes/draw/impls/image/makefile,115
+makefile:^?makefile^A,1
+SOURCEC 3,40
+SOURCEF 4,64
+SOURCEH 5,76
+MANSEC 6,100
+SUBMANSEC 7,116
+LIBBASE 8,133
+DIRS 9,157
+LOCDIR 10,169
src/sys/classes/draw/impls/image/drawimage.c,2259
drawimage.c:^?drawimage.c^A,1
@@ -24374,14 +24374,14 @@
PetscErrorCode PetscBagDestroy(533,21161
PetscErrorCode PetscBagSetFromOptions(570,22274
PetscErrorCode PetscBagView(648,25537
-PetscErrorCode PetscBagViewFromOptions(765,31892
-PetscErrorCode PetscBagLoad(809,33390
-PetscErrorCode PetscBagCreate(891,37776
-PetscErrorCode PetscBagSetName(923,38948
-PetscErrorCode PetscBagGetName(951,39859
-PetscErrorCode PetscBagGetData(978,40728
-PetscErrorCode PetscBagSetOptionsPrefix(1005,41510
-PetscErrorCode PetscBagGetNames(1035,42537
+PetscErrorCode PetscBagViewFromOptions(765,31893
+PetscErrorCode PetscBagLoad(809,33391
+PetscErrorCode PetscBagCreate(891,37777
+PetscErrorCode PetscBagSetName(923,38949
+PetscErrorCode PetscBagGetName(951,39860
+PetscErrorCode PetscBagGetData(978,40729
+PetscErrorCode PetscBagSetOptionsPrefix(1005,41511
+PetscErrorCode PetscBagGetNames(1035,42538
src/sys/classes/bag/makefile,97
makefile:^?makefile^A,1
@@ -24722,16 +24722,264 @@
static PetscErrorCode sourlf3d(103,4593
PETSC_EXTERN void dmdasnessetfunctionlocal_(115,5168
-src/snes/tutorials/ex5f90.F90,373
-ex5f90.F90:^?ex5f90.F90^A,1
- subroutine FormFunction(68,2284
- Subroutine SNESSetApplicationContext(123,4232
- Subroutine SNESGetApplicationContext(132,4507
- subroutine FormInitialGuess(326,12720
- subroutine InitialGuessLocal(379,14252
- subroutine FormFunctionLocal(430,15518
- subroutine FormJacobian(515,18265
- subroutine FormJacobianLocal(606,21521
+src/snes/tutorials/ex73f90t.F90,374
+ex73f90t.F90:^?ex73f90t.F90^A,1
+ Subroutine SNESSetApplicationContext(63,2147
+ Subroutine SNESGetApplicationContext(74,2505
+ subroutine FormInitialGuess(379,15090
+ subroutine InitialGuessLocal(428,16521
+ subroutine FormJacobian(482,18039
+ subroutine FormJacobianLocal(540,20040
+ subroutine FormFunction(624,22521
+ subroutine FormFunctionNLTerm(676,24396
+
+src/snes/tutorials/ex6.c,316
+ex6.c:^?ex6.c^A,1
+static char help[help2,1
+ PetscViewer viewer;20,585
+} ReasonViewCtx;21,607
+int main(23,625
+PetscErrorCode FormInitialGuess(158,5784
+PetscErrorCode FormFunction(183,6433
+PetscErrorCode FormJacobian(234,7803
+PetscErrorCode MySNESConvergedReasonView(296,9100
+PetscErrorCode MyKSPConvergedReasonView(316,9869
+
+src/snes/tutorials/ex30.c,4597
+ex30.c:^?ex30.c^A,1
+static const char help[help1,0
+#define VISC_CONST 58,2744
+#define VISC_DIFN 59,2767
+#define VISC_DISL 60,2790
+#define VISC_FULL 61,2813
+#define CELL_CENTER 62,2836
+#define CELL_CORNER 63,2859
+#define BC_ANALYTIC 64,2882
+#define BC_NOSTRESS 65,2905
+#define BC_EXPERMNT 66,2928
+#define ADVECT_FV 67,2951
+#define ADVECT_FROMM 68,2974
+#define PLATE_SLAB 69,2997
+#define PLATE_LID 70,3020
+#define EPS_ZERO 71,3043
+ PetscScalar u,74,3136
+ PetscScalar u, w,74,3136
+ PetscScalar u, w, p,74,3136
+ PetscScalar u, w, p, T;74,3136
+} Field;75,3162
+ PetscReal A,78,3234
+ PetscReal A, n,78,3234
+ PetscReal A, n, Estar,78,3234
+ PetscReal A, n, Estar, Vstar;78,3234
+} ViscParam;79,3266
+ PetscReal width,82,3341
+ PetscReal width, depth,82,3341
+ PetscReal width, depth, scaled_width,82,3341
+ PetscReal width, depth, scaled_width, scaled_depth,82,3341
+ PetscReal width, depth, scaled_width, scaled_depth, peclet,82,3341
+ PetscReal width, depth, scaled_width, scaled_depth, peclet, potentialT;82,3341
+ PetscReal slab_dip,83,3415
+ PetscReal slab_dip, slab_age,83,3415
+ PetscReal slab_dip, slab_age, slab_velocity,83,3415
+ PetscReal slab_dip, slab_age, slab_velocity, kappa,83,3415
+ PetscReal slab_dip, slab_age, slab_velocity, kappa, z_scale;83,3415
+ PetscReal c,84,3478
+ PetscReal c, d,84,3478
+ PetscReal c, d, sb,84,3478
+ PetscReal c, d, sb, cb,84,3478
+ PetscReal c, d, sb, cb, skt,84,3478
+ PetscReal c, d, sb, cb, skt, visc_cutoff,84,3478
+ PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age,84,3478
+ PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0,84,3478
+ PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0, continuation;84,3478
+ PetscReal L,85,3551
+ PetscReal L, V,85,3551
+ PetscReal L, V, lid_depth,85,3551
+ PetscReal L, V, lid_depth, fault_depth;85,3551
+ ViscParam diffusion,86,3593
+ ViscParam diffusion, dislocation;86,3593
+ PetscInt ivisc,87,3629
+ PetscInt ivisc, adv_scheme,87,3629
+ PetscInt ivisc, adv_scheme, ibound,87,3629
+ PetscInt ivisc, adv_scheme, ibound, output_ivisc;87,3629
+ PetscBool quiet,88,3682
+ PetscBool quiet, param_test,88,3682
+ PetscBool quiet, param_test, output_to_file,88,3682
+ PetscBool quiet, param_test, output_to_file, pv_analytic;88,3682
+ PetscBool interrupted,89,3742
+ PetscBool interrupted, stop_solve,89,3742
+ PetscBool interrupted, stop_solve, toggle_kspmon,89,3742
+ PetscBool interrupted, stop_solve, toggle_kspmon, kspmon;89,3742
+ char filename[filename90,3802
+} Parameter;91,3844
+ DMBoundaryType bx,94,3897
+ DMBoundaryType bx, by;94,3897
+ DMDAStencilType stencil;95,3923
+ PetscInt corner,96,3950
+ PetscInt corner, ni,96,3950
+ PetscInt corner, ni, nj,96,3950
+ PetscInt corner, ni, nj, jlid,96,3950
+ PetscInt corner, ni, nj, jlid, jfault,96,3950
+ PetscInt corner, ni, nj, jlid, jfault, inose;96,3950
+ PetscInt dof,97,4005
+ PetscInt dof, stencil_width,97,4005
+ PetscInt dof, stencil_width, mglevels;97,4005
+ PetscReal dx,98,4053
+ PetscReal dx, dz;98,4053
+} GridInfo;99,4079
+ Vec x,102,4135
+ Vec x, Xguess;102,4135
+ Parameter *param;param103,4159
+ GridInfo *grid;grid104,4179
+} AppCtx;105,4198
+int main(123,4937
+PetscErrorCode UpdateSolution(209,8608
+static inline PetscScalar UInterp(285,11478
+static inline PetscScalar WInterp(290,11633
+static inline PetscScalar PInterp(295,11788
+static inline PetscScalar TInterp(300,11943
+static inline PetscScalar HorizVelocity(306,12141
+static inline PetscScalar VertVelocity(323,12678
+static inline PetscScalar Pressure(341,13215
+static inline PetscScalar CalcSecInv(356,13675
+static inline PetscScalar Viscosity(421,15239
+static inline PetscScalar XMomentumResidual(463,16990
+static inline PetscScalar ZMomentumResidual(514,19180
+static inline PetscScalar ContinuityResidual(569,21473
+static inline PetscScalar EnergyResidual(585,21867
+static inline PetscScalar ShearStress(644,24260
+static inline PetscScalar XNormalStress(678,25151
+static inline PetscScalar ZNormalStress(717,26444
+PetscErrorCode SetParams(760,27970
+PetscErrorCode ReportParams(894,34478
+PetscErrorCode Initialize(960,38625
+PetscErrorCode DoOutput(1003,39816
+PetscErrorCode ViscosityField(1091,43668
+PetscErrorCode StressField(1150,45709
+static inline PetscScalar SlabVel(1191,47215
+static inline PetscScalar PlateModel(1209,47687
+PetscErrorCode SNESConverged_Interactive(1228,48421
+PetscErrorCode InteractiveHandler(1266,49987
+PetscErrorCode FormFunctionLocal(1287,50587
+
+src/snes/tutorials/ex3.c,785
+ex3.c:^?ex3.c^A,1
+static char help[help1,0
+ DM da;45,1740
+ Vec F;46,1785
+ PetscMPIInt rank;47,1835
+ PetscMPIInt size;48,1880
+ PetscReal h;49,1928
+ PetscBool sjerr;50,1968
+} ApplicationCtx;51,2035
+ PetscViewer viewer;57,2116
+} MonitorCtx;58,2138
+ Vec last_step;65,2278
+ PetscReal tolerance;66,2330
+ ApplicationCtx *user;user67,2415
+} StepCheckCtx;68,2439
+ PetscInt its0;71,2473
+} SetSubKSPCtx;72,2533
+int main(74,2550
+PetscErrorCode FormInitialGuess(322,11819
+PetscErrorCode FormFunction(347,12409
+PetscErrorCode FormJacobian(429,15116
+PetscErrorCode Monitor(519,17637
+PetscErrorCode PreCheck(545,18525
+PetscErrorCode PostCheck(570,19376
+PetscErrorCode PostSetSubKSP(640,22202
+PetscErrorCode MatrixFreePreconditioner(685,24097
+
+src/snes/tutorials/ex28.c,691
+ex28.c:^?ex28.c^A,1
+static const char help[help1,0
+typedef struct _UserCtx *User;User31,1404
+struct _UserCtx 32,1435
+ PetscInt ptype;33,1453
+ DM pack;34,1471
+ Vec Uloc,35,1488
+ Vec Uloc, Kloc;35,1488
+static PetscErrorCode FormFunctionLocal_U(38,1515
+static PetscErrorCode FormFunctionLocal_K(52,2016
+static PetscErrorCode FormFunction_All(65,2518
+static PetscErrorCode FormJacobianLocal_U(122,4885
+static PetscErrorCode FormJacobianLocal_K(143,5672
+static PetscErrorCode FormJacobianLocal_UK(157,6160
+static PetscErrorCode FormJacobianLocal_KU(178,6891
+static PetscErrorCode FormJacobian_All(198,8001
+static PetscErrorCode FormInitial_Coupled(277,11502
+int main(302,12511
+
+src/snes/tutorials/ex19.c,495
+ex19.c:^?ex19.c^A,1
+static char help[help4,111
+ PetscScalar u,77,3154
+ PetscScalar u, v,77,3154
+ PetscScalar u, v, omega,77,3154
+ PetscScalar u, v, omega, temp;77,3154
+} Field;78,3187
+ PetscReal lidvelocity,83,3294
+ PetscReal lidvelocity, prandtl,83,3294
+ PetscReal lidvelocity, prandtl, grashof;83,3294
+ PetscBool draw_contours;84,3363
+} AppCtx;85,3448
+int main(90,3578
+PetscErrorCode FormInitialGuess(185,7273
+PetscErrorCode FormFunctionLocal(233,8614
+PetscErrorCode NonlinearGS(368,13233
+
+src/snes/tutorials/ex16.c,1591
+ex16.c:^?ex16.c^A,1
+static char help[help2,1
+#define QP0 48,2082
+#define QP1 49,2113
+#define NQ 50,2144
+#define NB 51,2158
+#define NEB 52,2172
+#define NEQ 53,2186
+#define NPB 54,2200
+#define NVALS 56,2216
+const PetscReal pts[pts57,2239
+const PetscReal wts[wts58,2277
+PetscScalar vals[vals60,2316
+PetscScalar grad[grad61,2341
+typedef PetscScalar Field[Field63,2371
+typedef PetscScalar CoordField[CoordField64,2401
+typedef PetscScalar JacField[JacField66,2437
+ PetscReal loading;74,2724
+ PetscReal mu;75,2745
+ PetscReal lambda;76,2761
+ PetscReal rad;77,2781
+ PetscReal height;78,2798
+ PetscReal width;79,2818
+ PetscReal arc;80,2837
+ PetscReal ploading;81,2854
+} AppCtx;82,2876
+int main(89,3105
+PetscInt OnBoundary(192,7509
+void BoundaryValue(198,7677
+void InvertTensor(212,8174
+void TensorTensor(248,9434
+void TensorTransposeTensor(259,9692
+void TensorVector(270,9959
+void DeformationGradient(277,10232
+void DeformationGradientJacobian(306,11217
+void LagrangeGreenStrain(320,11801
+void SaintVenantKirchoff(332,12103
+void SaintVenantKirchoffJacobian(347,12497
+PetscErrorCode FormElements(365,13064
+void GatherElementData(411,14407
+void QuadraturePointGeometricJacobian(432,15233
+void FormElementJacobian(456,16165
+void FormPBJacobian(537,19425
+void ApplyBCsElement(589,21346
+PetscErrorCode FormJacobianLocal(619,22406
+PetscErrorCode FormFunctionLocal(728,25748
+PetscErrorCode NonlinearGS(802,28232
+PetscErrorCode FormCoordinates(910,32441
+PetscErrorCode InitialGuess(944,33736
+PetscErrorCode FormRHS(975,34707
+PetscErrorCode DisplayLine(1000,35422
src/snes/tutorials/ex13.c,985
ex13.c:^?ex13.c^A,1
@@ -24762,17 +25010,100 @@
static PetscErrorCode ComputeSpectral(236,10960
int main(343,15403
-src/snes/tutorials/ex6.c,316
-ex6.c:^?ex6.c^A,1
-static char help[help2,1
- PetscViewer viewer;20,585
-} ReasonViewCtx;21,607
-int main(23,625
-PetscErrorCode FormInitialGuess(158,5782
-PetscErrorCode FormFunction(183,6431
-PetscErrorCode FormJacobian(234,7801
-PetscErrorCode MySNESConvergedReasonView(296,9098
-PetscErrorCode MyKSPConvergedReasonView(316,9867
+src/snes/tutorials/ex12.c,2773
+ex12.c:^?ex12.c^A,1
+static char help[help1,0
+ NEUMANN,24,768
+ DIRICHLET,25,779
+ NONE26,792
+} BCType;27,799
+ RUN_FULL,29,824
+ RUN_EXACT,30,836
+ RUN_TEST,31,849
+ RUN_PERF32,861
+} RunType;33,872
+ COEFF_NONE,35,898
+ COEFF_ANALYTIC,36,912
+ COEFF_FIELD,37,930
+ COEFF_NONLINEAR,38,945
+ COEFF_BALL,39,964
+ COEFF_CROSS,40,978
+ COEFF_CHECKERBOARD_0,41,993
+ COEFF_CHECKERBOARD_142,1017
+} CoeffType;43,1040
+ RunType runType;46,1071
+ PetscBool jacobianMF;47,1149
+ PetscBool showInitial,48,1231
+ PetscBool showInitial, showSolution,48,1231
+ PetscBool showInitial, showSolution, restart,48,1231
+ PetscBool showInitial, showSolution, restart, quiet,48,1231
+ PetscBool showInitial, showSolution, restart, quiet, nonzInit;48,1231
+ BCType bcType;50,1323
+ CoeffType variableCoefficient;51,1343
+ PetscErrorCode (**exactFuncs)exactFuncs52,1376
+ PetscBool fieldBC;53,1500
+ void (**exactFields)exactFields54,1521
+ PetscBool bdIntegral;55,1849
+ PetscInt div;57,1997
+ PetscInt k;58,2042
+ PetscInt *kgrid;kgrid59,2106
+ PetscBool rand;60,2153
+ PC pcmg;62,2217
+ PetscBool checkksp;63,2281
+} AppCtx;64,2363
+static PetscErrorCode zero(66,2374
+static PetscErrorCode ecks(72,2523
+static PetscErrorCode quadratic_u_2d(103,3405
+static void quadratic_u_field_2d(109,3584
+static PetscErrorCode ball_u_2d(114,4037
+static PetscErrorCode cross_u_2d(125,4415
+static void f0_u(134,4734
+static void f0_ball_u(139,5162
+static void f0_cross_u_2d(150,5903
+static void f0_checkerboard_0_u(158,6506
+static void f0_bd_u(163,7014
+static void f1_u(170,7591
+static void g3_uu(178,8174
+static PetscErrorCode xtrig_u_2d(194,8881
+static void f0_xtrig_u(200,9066
+static PetscErrorCode xytrig_u_2d(215,9800
+static void f0_xytrig_u(221,10024
+static PetscErrorCode nu_2d(237,10733
+static PetscErrorCode checkerboardCoeff(243,10889
+void f0_analytic_u(263,11476
+void f1_analytic_u(269,11978
+void f1_field_u(275,12467
+void g3_analytic_uu(283,13056
+void g3_field_uu(289,13565
+void f0_analytic_nonlinear_u(306,14326
+void f1_analytic_nonlinear_u(312,14853
+void g3_analytic_nonlinear_uu(328,15746
+static PetscErrorCode quadratic_u_3d(362,17097
+static PetscErrorCode ball_u_3d(368,17304
+static void quadratic_u_field_3d(379,17705
+static PetscErrorCode cross_u_3d(384,18158
+static void f0_cross_u_3d(393,18549
+static void bd_integral_2d(401,19224
+static PetscErrorCode ProcessOptions(406,19687
+static PetscErrorCode CreateBCLabel(458,23277
+static PetscErrorCode CreateMesh(472,23639
+static PetscErrorCode SetupProblem(520,25083
+static PetscErrorCode SetupMaterial(663,30434
+static PetscErrorCode SetupBC(680,31105
+static PetscErrorCode SetupAuxDM(697,31730
+static PetscErrorCode SetupDiscretization(715,32350
+int main(759,34020
+
+src/snes/tutorials/ex5f90.F90,373
+ex5f90.F90:^?ex5f90.F90^A,1
+ subroutine FormFunction(68,2284
+ Subroutine SNESSetApplicationContext(123,4232
+ Subroutine SNESGetApplicationContext(132,4507
+ subroutine FormInitialGuess(326,12720
+ subroutine InitialGuessLocal(379,14252
+ subroutine FormFunctionLocal(430,15518
+ subroutine FormJacobian(515,18265
+ subroutine FormJacobianLocal(606,21521
src/snes/tutorials/ex22.c,562
ex22.c:^?ex22.c^A,1
@@ -24809,59 +25140,6 @@
PetscErrorCode FormFunction(110,3920
PetscErrorCode Monitor(167,6403
-src/snes/tutorials/ex16.c,1591
-ex16.c:^?ex16.c^A,1
-static char help[help2,1
-#define QP0 48,2081
-#define QP1 49,2112
-#define NQ 50,2143
-#define NB 51,2157
-#define NEB 52,2171
-#define NEQ 53,2185
-#define NPB 54,2199
-#define NVALS 56,2215
-const PetscReal pts[pts57,2238
-const PetscReal wts[wts58,2276
-PetscScalar vals[vals60,2315
-PetscScalar grad[grad61,2340
-typedef PetscScalar Field[Field63,2370
-typedef PetscScalar CoordField[CoordField64,2400
-typedef PetscScalar JacField[JacField66,2436
- PetscReal loading;74,2723
- PetscReal mu;75,2744
- PetscReal lambda;76,2760
- PetscReal rad;77,2780
- PetscReal height;78,2797
- PetscReal width;79,2817
- PetscReal arc;80,2836
- PetscReal ploading;81,2853
-} AppCtx;82,2875
-int main(89,3104
-PetscInt OnBoundary(192,7508
-void BoundaryValue(198,7676
-void InvertTensor(212,8173
-void TensorTensor(248,9433
-void TensorTransposeTensor(259,9691
-void TensorVector(270,9958
-void DeformationGradient(277,10231
-void DeformationGradientJacobian(306,11216
-void LagrangeGreenStrain(320,11800
-void SaintVenantKirchoff(332,12102
-void SaintVenantKirchoffJacobian(347,12496
-PetscErrorCode FormElements(365,13063
-void GatherElementData(411,14406
-void QuadraturePointGeometricJacobian(432,15232
-void FormElementJacobian(456,16164
-void FormPBJacobian(537,19424
-void ApplyBCsElement(589,21345
-PetscErrorCode FormJacobianLocal(619,22405
-PetscErrorCode FormFunctionLocal(728,25747
-PetscErrorCode NonlinearGS(802,28231
-PetscErrorCode FormCoordinates(910,32440
-PetscErrorCode InitialGuess(944,33735
-PetscErrorCode FormRHS(975,34706
-PetscErrorCode DisplayLine(1000,35421
-
src/snes/tutorials/ex5f.F90,225
ex5f.F90:^?ex5f.F90^A,1
subroutine FormInitialGuess(240,8553
@@ -25098,17 +25376,6 @@
integer probnum, ihod, mx, my, neq, ientro,1,0
integer probnum, ihod, mx, my, neq, ientro, gorder parameter(1,0
-src/snes/tutorials/ex73f90t.F90,374
-ex73f90t.F90:^?ex73f90t.F90^A,1
- Subroutine SNESSetApplicationContext(63,2147
- Subroutine SNESGetApplicationContext(74,2505
- subroutine FormInitialGuess(379,15091
- subroutine InitialGuessLocal(428,16522
- subroutine FormJacobian(482,18040
- subroutine FormJacobianLocal(540,20041
- subroutine FormFunction(624,22522
- subroutine FormFunctionNLTerm(676,24397
-
src/snes/tutorials/ex71.c,621
ex71.c:^?ex71.c^A,1
static char help[help1,0
@@ -25713,171 +25980,6 @@
static void ChebyshevEval(130,5053
PetscErrorCode FormFunction(161,6332
-src/snes/tutorials/ex30.c,4597
-ex30.c:^?ex30.c^A,1
-static const char help[help1,0
-#define VISC_CONST 58,2744
-#define VISC_DIFN 59,2767
-#define VISC_DISL 60,2790
-#define VISC_FULL 61,2813
-#define CELL_CENTER 62,2836
-#define CELL_CORNER 63,2859
-#define BC_ANALYTIC 64,2882
-#define BC_NOSTRESS 65,2905
-#define BC_EXPERMNT 66,2928
-#define ADVECT_FV 67,2951
-#define ADVECT_FROMM 68,2974
-#define PLATE_SLAB 69,2997
-#define PLATE_LID 70,3020
-#define EPS_ZERO 71,3043
- PetscScalar u,74,3136
- PetscScalar u, w,74,3136
- PetscScalar u, w, p,74,3136
- PetscScalar u, w, p, T;74,3136
-} Field;75,3162
- PetscReal A,78,3234
- PetscReal A, n,78,3234
- PetscReal A, n, Estar,78,3234
- PetscReal A, n, Estar, Vstar;78,3234
-} ViscParam;79,3266
- PetscReal width,82,3340
- PetscReal width, depth,82,3340
- PetscReal width, depth, scaled_width,82,3340
- PetscReal width, depth, scaled_width, scaled_depth,82,3340
- PetscReal width, depth, scaled_width, scaled_depth, peclet,82,3340
- PetscReal width, depth, scaled_width, scaled_depth, peclet, potentialT;82,3340
- PetscReal slab_dip,83,3414
- PetscReal slab_dip, slab_age,83,3414
- PetscReal slab_dip, slab_age, slab_velocity,83,3414
- PetscReal slab_dip, slab_age, slab_velocity, kappa,83,3414
- PetscReal slab_dip, slab_age, slab_velocity, kappa, z_scale;83,3414
- PetscReal c,84,3477
- PetscReal c, d,84,3477
- PetscReal c, d, sb,84,3477
- PetscReal c, d, sb, cb,84,3477
- PetscReal c, d, sb, cb, skt,84,3477
- PetscReal c, d, sb, cb, skt, visc_cutoff,84,3477
- PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age,84,3477
- PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0,84,3477
- PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0, continuation;84,3477
- PetscReal L,85,3550
- PetscReal L, V,85,3550
- PetscReal L, V, lid_depth,85,3550
- PetscReal L, V, lid_depth, fault_depth;85,3550
- ViscParam diffusion,86,3592
- ViscParam diffusion, dislocation;86,3592
- PetscInt ivisc,87,3628
- PetscInt ivisc, adv_scheme,87,3628
- PetscInt ivisc, adv_scheme, ibound,87,3628
- PetscInt ivisc, adv_scheme, ibound, output_ivisc;87,3628
- PetscBool quiet,88,3681
- PetscBool quiet, param_test,88,3681
- PetscBool quiet, param_test, output_to_file,88,3681
- PetscBool quiet, param_test, output_to_file, pv_analytic;88,3681
- PetscBool interrupted,89,3741
- PetscBool interrupted, stop_solve,89,3741
- PetscBool interrupted, stop_solve, toggle_kspmon,89,3741
- PetscBool interrupted, stop_solve, toggle_kspmon, kspmon;89,3741
- char filename[filename90,3801
-} Parameter;91,3843
- DMBoundaryType bx,94,3896
- DMBoundaryType bx, by;94,3896
- DMDAStencilType stencil;95,3922
- PetscInt corner,96,3949
- PetscInt corner, ni,96,3949
- PetscInt corner, ni, nj,96,3949
- PetscInt corner, ni, nj, jlid,96,3949
- PetscInt corner, ni, nj, jlid, jfault,96,3949
- PetscInt corner, ni, nj, jlid, jfault, inose;96,3949
- PetscInt dof,97,4004
- PetscInt dof, stencil_width,97,4004
- PetscInt dof, stencil_width, mglevels;97,4004
- PetscReal dx,98,4052
- PetscReal dx, dz;98,4052
-} GridInfo;99,4078
- Vec x,102,4134
- Vec x, Xguess;102,4134
- Parameter *param;param103,4158
- GridInfo *grid;grid104,4178
-} AppCtx;105,4197
-int main(123,4936
-PetscErrorCode UpdateSolution(209,8607
-static inline PetscScalar UInterp(285,11477
-static inline PetscScalar WInterp(290,11632
-static inline PetscScalar PInterp(295,11787
-static inline PetscScalar TInterp(300,11942
-static inline PetscScalar HorizVelocity(306,12140
-static inline PetscScalar VertVelocity(323,12677
-static inline PetscScalar Pressure(341,13214
-static inline PetscScalar CalcSecInv(356,13674
-static inline PetscScalar Viscosity(421,15238
-static inline PetscScalar XMomentumResidual(463,16989
-static inline PetscScalar ZMomentumResidual(514,19179
-static inline PetscScalar ContinuityResidual(569,21472
-static inline PetscScalar EnergyResidual(585,21866
-static inline PetscScalar ShearStress(644,24259
-static inline PetscScalar XNormalStress(678,25150
-static inline PetscScalar ZNormalStress(717,26443
-PetscErrorCode SetParams(760,27969
-PetscErrorCode ReportParams(894,34477
-PetscErrorCode Initialize(960,38624
-PetscErrorCode DoOutput(1003,39815
-PetscErrorCode ViscosityField(1091,43667
-PetscErrorCode StressField(1150,45708
-static inline PetscScalar SlabVel(1191,47214
-static inline PetscScalar PlateModel(1209,47686
-PetscErrorCode SNESConverged_Interactive(1228,48420
-PetscErrorCode InteractiveHandler(1266,49986
-PetscErrorCode FormFunctionLocal(1287,50586
-
-src/snes/tutorials/ex3.c,785
-ex3.c:^?ex3.c^A,1
-static char help[help1,0
- DM da;45,1740
- Vec F;46,1785
- PetscMPIInt rank;47,1835
- PetscMPIInt size;48,1880
- PetscReal h;49,1928
- PetscBool sjerr;50,1968
-} ApplicationCtx;51,2035
- PetscViewer viewer;57,2116
-} MonitorCtx;58,2138
- Vec last_step;65,2278
- PetscReal tolerance;66,2330
- ApplicationCtx *user;user67,2415
-} StepCheckCtx;68,2439
- PetscInt its0;71,2473
-} SetSubKSPCtx;72,2532
-int main(74,2549
-PetscErrorCode FormInitialGuess(322,11818
-PetscErrorCode FormFunction(347,12408
-PetscErrorCode FormJacobian(429,15115
-PetscErrorCode Monitor(519,17636
-PetscErrorCode PreCheck(545,18524
-PetscErrorCode PostCheck(570,19375
-PetscErrorCode PostSetSubKSP(640,22201
-PetscErrorCode MatrixFreePreconditioner(685,24096
-
-src/snes/tutorials/ex28.c,691
-ex28.c:^?ex28.c^A,1
-static const char help[help1,0
-typedef struct _UserCtx *User;User31,1404
-struct _UserCtx 32,1435
- PetscInt ptype;33,1453
- DM pack;34,1471
- Vec Uloc,35,1488
- Vec Uloc, Kloc;35,1488
-static PetscErrorCode FormFunctionLocal_U(38,1515
-static PetscErrorCode FormFunctionLocal_K(52,2016
-static PetscErrorCode FormFunction_All(65,2518
-static PetscErrorCode FormJacobianLocal_U(122,4885
-static PetscErrorCode FormJacobianLocal_K(143,5672
-static PetscErrorCode FormJacobianLocal_UK(157,6160
-static PetscErrorCode FormJacobianLocal_KU(178,6891
-static PetscErrorCode FormJacobian_All(198,8001
-static PetscErrorCode FormInitial_Coupled(277,11502
-int main(302,12511
-
src/snes/tutorials/ex26.c,497
ex26.c:^?ex26.c^A,1
static char help[help1,0
@@ -25988,24 +26090,6 @@
subroutine FormJacobian(239,8237
subroutine MyLineSearch(291,9589
-src/snes/tutorials/ex19.c,495
-ex19.c:^?ex19.c^A,1
-static char help[help4,111
- PetscScalar u,77,3154
- PetscScalar u, v,77,3154
- PetscScalar u, v, omega,77,3154
- PetscScalar u, v, omega, temp;77,3154
-} Field;78,3187
- PetscReal lidvelocity,83,3294
- PetscReal lidvelocity, prandtl,83,3294
- PetscReal lidvelocity, prandtl, grashof;83,3294
- PetscBool draw_contours;84,3363
-} AppCtx;85,3448
-int main(90,3578
-PetscErrorCode FormInitialGuess(185,7273
-PetscErrorCode FormFunctionLocal(233,8614
-PetscErrorCode NonlinearGS(368,13233
-
src/snes/tutorials/ex18.c,362
ex18.c:^?ex18.c^A,1
static char help[help2,1
@@ -26131,90 +26215,6 @@
PetscErrorCode FormFunction(348,14138
PetscErrorCode FormJacobian(384,15199
-src/snes/tutorials/ex12.c,2773
-ex12.c:^?ex12.c^A,1
-static char help[help1,0
- NEUMANN,24,768
- DIRICHLET,25,779
- NONE26,792
-} BCType;27,799
- RUN_FULL,29,824
- RUN_EXACT,30,836
- RUN_TEST,31,849
- RUN_PERF32,861
-} RunType;33,872
- COEFF_NONE,35,898
- COEFF_ANALYTIC,36,912
- COEFF_FIELD,37,930
- COEFF_NONLINEAR,38,945
- COEFF_BALL,39,964
- COEFF_CROSS,40,978
- COEFF_CHECKERBOARD_0,41,993
- COEFF_CHECKERBOARD_142,1017
-} CoeffType;43,1040
- RunType runType;46,1071
- PetscBool jacobianMF;47,1149
- PetscBool showInitial,48,1231
- PetscBool showInitial, showSolution,48,1231
- PetscBool showInitial, showSolution, restart,48,1231
- PetscBool showInitial, showSolution, restart, quiet,48,1231
- PetscBool showInitial, showSolution, restart, quiet, nonzInit;48,1231
- BCType bcType;50,1323
- CoeffType variableCoefficient;51,1343
- PetscErrorCode (**exactFuncs)exactFuncs52,1376
- PetscBool fieldBC;53,1500
- void (**exactFields)exactFields54,1521
- PetscBool bdIntegral;55,1849
- PetscInt div;57,1997
- PetscInt k;58,2042
- PetscInt *kgrid;kgrid59,2106
- PetscBool rand;60,2153
- PC pcmg;62,2217
- PetscBool checkksp;63,2281
-} AppCtx;64,2363
-static PetscErrorCode zero(66,2374
-static PetscErrorCode ecks(72,2523
-static PetscErrorCode quadratic_u_2d(103,3405
-static void quadratic_u_field_2d(109,3584
-static PetscErrorCode ball_u_2d(114,4037
-static PetscErrorCode cross_u_2d(125,4415
-static void f0_u(134,4734
-static void f0_ball_u(139,5162
-static void f0_cross_u_2d(150,5903
-static void f0_checkerboard_0_u(158,6506
-static void f0_bd_u(163,7014
-static void f1_u(170,7591
-static void g3_uu(178,8174
-static PetscErrorCode xtrig_u_2d(194,8881
-static void f0_xtrig_u(200,9066
-static PetscErrorCode xytrig_u_2d(215,9800
-static void f0_xytrig_u(221,10024
-static PetscErrorCode nu_2d(237,10733
-static PetscErrorCode checkerboardCoeff(243,10889
-void f0_analytic_u(263,11476
-void f1_analytic_u(269,11978
-void f1_field_u(275,12467
-void g3_analytic_uu(283,13056
-void g3_field_uu(289,13565
-void f0_analytic_nonlinear_u(306,14326
-void f1_analytic_nonlinear_u(312,14853
-void g3_analytic_nonlinear_uu(328,15746
-static PetscErrorCode quadratic_u_3d(362,17097
-static PetscErrorCode ball_u_3d(368,17304
-static void quadratic_u_field_3d(379,17705
-static PetscErrorCode cross_u_3d(384,18158
-static void f0_cross_u_3d(393,18549
-static void bd_integral_2d(401,19224
-static PetscErrorCode ProcessOptions(406,19687
-static PetscErrorCode CreateBCLabel(458,23276
-static PetscErrorCode CreateMesh(472,23638
-static PetscErrorCode SetupProblem(520,25082
-static PetscErrorCode SetupMaterial(663,30433
-static PetscErrorCode SetupBC(680,31104
-static PetscErrorCode SetupAuxDM(697,31729
-static PetscErrorCode SetupDiscretization(715,32349
-int main(759,34019
-
src/snes/tutorials/ex1.c,201
ex1.c:^?ex1.c^A,1
static char help[help2,1
@@ -26520,11 +26520,6 @@
PFReadData.c:^?PFReadData.c^A,1
PetscErrorCode PFReadMatPowerData(6,81
-src/snes/tutorials/ex10d/makefile,26
-makefile:^?makefile^A,1
-LOCDIR 3,34
-MANSEC 4,71
-
src/snes/tutorials/ex10d/ex10.c,781
ex10.c:^?ex10.c^A,1
static char help[help14,439
@@ -26550,7 +26545,27 @@
int main(72,3499
PetscErrorCode FormInitialGuess(497,21761
PetscErrorCode FormFunction(548,23076
-PetscErrorCode FormJacobian(627,25529
+PetscErrorCode FormJacobian(627,25530
+
+src/snes/tutorials/ex10d/makefile,26
+makefile:^?makefile^A,1
+LOCDIR 3,34
+MANSEC 4,71
+
+src/snes/tests/ex1.c,382
+ex1.c:^?ex1.c^A,1
+static char help[help2,1
+ PetscReal param;46,1588
+ PetscInt mx;47,1636
+ PetscInt my;48,1691
+} AppCtx;49,1746
+int main(61,2202
+PetscErrorCode FormInitialGuess(276,11379
+PetscErrorCode FormFunction(328,12703
+PetscErrorCode FormJacobian(393,14298
+PetscErrorCode ConvergenceTest(458,15940
+PetscErrorCode ConvergenceDestroy(469,16287
+PetscErrorCode postcheck(477,16490
src/snes/tests/ex241.cxx,195
ex241.cxx:^?ex241.cxx^A,1
@@ -26774,21 +26789,6 @@
subroutine FormInitialGuess(238,7909
subroutine FormJacobian(254,8250
-src/snes/tests/ex1.c,382
-ex1.c:^?ex1.c^A,1
-static char help[help2,1
- PetscReal param;46,1588
- PetscInt mx;47,1636
- PetscInt my;48,1691
-} AppCtx;49,1746
-int main(61,2202
-PetscErrorCode FormInitialGuess(276,11379
-PetscErrorCode FormFunction(328,12703
-PetscErrorCode FormJacobian(393,14298
-PetscErrorCode ConvergenceTest(458,15939
-PetscErrorCode ConvergenceDestroy(469,16286
-PetscErrorCode postcheck(477,16489
-
src/snes/mf/snesmfj.c,514
snesmfj.c:^?snesmfj.c^A,1
PetscErrorCode MatMFFDComputeJacobian(41,1814
@@ -27541,6 +27541,26 @@
MANSEC 7,112
LOCDIR 8,128
+src/snes/impls/tr/trimpl.h,521
+trimpl.h:^?trimpl.h^A,1
+#define __SNES_TR_H8,120
+ PetscReal mu;13,256
+ PetscReal eta;14,327
+ PetscReal delta;15,398
+ PetscReal delta0;16,453
+ PetscReal delta1;17,527
+ PetscReal delta2;18,598
+ PetscReal delta3;19,669
+ PetscReal sigma;20,740
+ PetscBool itflag;21,802
+ PetscReal rnorm0,22,863
+ PetscReal rnorm0, ttol;22,863
+ PetscErrorCode (*precheck)precheck23,925
+ void *precheckctx;precheckctx24,992
+ PetscErrorCode (*postcheck)postcheck25,1013
+ void *postcheckctx;postcheckctx26,1099
+} SNES_NEWTONTR;27,1121
+
src/snes/impls/tr/tr.c,1027
tr.c:^?tr.c^A,1
SNES snes;4,85
@@ -27565,26 +27585,6 @@
static PetscErrorCode SNESView_NEWTONTR(467,17813
PETSC_EXTERN PetscErrorCode SNESCreate_NEWTONTR(505,19462
-src/snes/impls/tr/trimpl.h,521
-trimpl.h:^?trimpl.h^A,1
-#define __SNES_TR_H8,120
- PetscReal mu;13,256
- PetscReal eta;14,327
- PetscReal delta;15,398
- PetscReal delta0;16,453
- PetscReal delta1;17,527
- PetscReal delta2;18,598
- PetscReal delta3;19,669
- PetscReal sigma;20,740
- PetscBool itflag;21,801
- PetscReal rnorm0,22,862
- PetscReal rnorm0, ttol;22,862
- PetscErrorCode (*precheck)precheck23,924
- void *precheckctx;precheckctx24,991
- PetscErrorCode (*postcheck)postcheck25,1012
- void *postcheckctx;postcheckctx26,1098
-} SNES_NEWTONTR;27,1120
-
src/snes/impls/tr/makefile,84
makefile:^?makefile^A,1
SOURCEC 3,34
@@ -27760,31 +27760,6 @@
MANSEC 7,103
LOCDIR 8,119
-src/snes/impls/ntrdc/ntrdc.c,1115
-ntrdc.c:^?ntrdc.c^A,1
- SNES snes;5,92
- PetscErrorCode (*convtest)convtest11,391
- PetscErrorCode (*convdestroy)convdestroy12,477
- void *convctx;convctx13,518
-} SNES_TRDC_KSPConverged_Ctx;14,535
-static PetscErrorCode SNESTRDC_KSPConverged_Private(16,566
-static PetscErrorCode SNESTRDC_KSPConverged_Destroy(37,1539
-static PetscErrorCode SNESTRDC_Converged_Private(53,1902
-PetscErrorCode SNESNewtonTRDCGetRhoFlag(83,3180
-PetscErrorCode SNESNewtonTRDCSetPreCheck(113,4304
-PetscErrorCode SNESNewtonTRDCGetPreCheck(140,5151
-PetscErrorCode SNESNewtonTRDCSetPostCheck(170,6441
-PetscErrorCode SNESNewtonTRDCGetPostCheck(197,7312
-static PetscErrorCode SNESNewtonTRDCPreCheck(225,8139
-static PetscErrorCode SNESNewtonTRDCPostCheck(260,9202
-static PetscErrorCode SNESSolve_NEWTONTRDC(281,9965
-static PetscErrorCode SNESSetUp_NEWTONTRDC(568,23723
-PetscErrorCode SNESReset_NEWTONTRDC(576,23907
-static PetscErrorCode SNESDestroy_NEWTONTRDC(582,24007
-static PetscErrorCode SNESSetFromOptions_NEWTONTRDC(590,24193
-static PetscErrorCode SNESView_NEWTONTRDC(611,25815
-PETSC_EXTERN PetscErrorCode SNESCreate_NEWTONTRDC(653,28512
-
src/snes/impls/ntrdc/ntrdcimpl.h,823
ntrdcimpl.h:^?ntrdcimpl.h^A,1
#define __SNES_TR_H8,120
@@ -27802,10 +27777,10 @@
PetscReal t2;25,891
PetscReal deltaM;26,939
PetscReal sigma;31,1243
- PetscBool itflag;32,1313
- PetscBool use_cauchy;33,1383
- PetscBool auto_scale_multiphase;34,1476
- PetscReal auto_scale_max;35,1578
+ PetscBool itflag;32,1314
+ PetscBool use_cauchy;33,1384
+ PetscBool auto_scale_multiphase;34,1477
+ PetscReal auto_scale_max;35,1579
PetscBool rho_satisfied;36,1663
PetscReal rnorm0,37,1751
PetscReal rnorm0, ttol;37,1751
@@ -27815,6 +27790,31 @@
void *postcheckctx;postcheckctx41,1996
} SNES_NEWTONTRDC;42,2018
+src/snes/impls/ntrdc/ntrdc.c,1115
+ntrdc.c:^?ntrdc.c^A,1
+ SNES snes;5,92
+ PetscErrorCode (*convtest)convtest11,391
+ PetscErrorCode (*convdestroy)convdestroy12,477
+ void *convctx;convctx13,518
+} SNES_TRDC_KSPConverged_Ctx;14,535
+static PetscErrorCode SNESTRDC_KSPConverged_Private(16,566
+static PetscErrorCode SNESTRDC_KSPConverged_Destroy(37,1539
+static PetscErrorCode SNESTRDC_Converged_Private(53,1902
+PetscErrorCode SNESNewtonTRDCGetRhoFlag(83,3180
+PetscErrorCode SNESNewtonTRDCSetPreCheck(113,4304
+PetscErrorCode SNESNewtonTRDCGetPreCheck(140,5151
+PetscErrorCode SNESNewtonTRDCSetPostCheck(170,6441
+PetscErrorCode SNESNewtonTRDCGetPostCheck(197,7312
+static PetscErrorCode SNESNewtonTRDCPreCheck(225,8139
+static PetscErrorCode SNESNewtonTRDCPostCheck(260,9202
+static PetscErrorCode SNESSolve_NEWTONTRDC(281,9965
+static PetscErrorCode SNESSetUp_NEWTONTRDC(568,23723
+PetscErrorCode SNESReset_NEWTONTRDC(576,23907
+static PetscErrorCode SNESDestroy_NEWTONTRDC(582,24007
+static PetscErrorCode SNESSetFromOptions_NEWTONTRDC(590,24193
+static PetscErrorCode SNESView_NEWTONTRDC(611,25815
+PETSC_EXTERN PetscErrorCode SNESCreate_NEWTONTRDC(653,28512
+
src/snes/impls/ntrdc/makefile,84
makefile:^?makefile^A,1
SOURCEC 3,34
@@ -27838,11 +27838,11 @@
PetscErrorCode SNESNGMRESSetRestartFmRise_NGMRES(350,15981
PetscErrorCode SNESNGMRESGetRestartFmRise(359,16194
PetscErrorCode SNESNGMRESGetRestartFmRise_NGMRES(369,16489
-PetscErrorCode SNESNGMRESSetRestartType(400,17461
-PetscErrorCode SNESNGMRESSetSelectType(433,18691
-PetscErrorCode SNESNGMRESSetSelectType_NGMRES(441,18971
-PetscErrorCode SNESNGMRESSetRestartType_NGMRES(450,19192
-PETSC_EXTERN PetscErrorCode SNESCreate_NGMRES(495,21567
+PetscErrorCode SNESNGMRESSetRestartType(400,17462
+PetscErrorCode SNESNGMRESSetSelectType(433,18692
+PetscErrorCode SNESNGMRESSetSelectType_NGMRES(441,18972
+PetscErrorCode SNESNGMRESSetRestartType_NGMRES(450,19193
+PETSC_EXTERN PetscErrorCode SNESCreate_NGMRES(495,21568
src/snes/impls/ngmres/snesngmres.h,1274
snesngmres.h:^?snesngmres.h^A,1
@@ -28210,7 +28210,7 @@
fasgalerkin.c:^?fasgalerkin.c^A,1
PetscErrorCode SNESFASGetGalerkin(18,490
PetscErrorCode SNESFASSetGalerkin(42,1065
-PetscErrorCode SNESFASGalerkinFunctionDefault(75,1841
+PetscErrorCode SNESFASGalerkinFunctionDefault(75,1840
src/snes/impls/fas/fasfunc.c,1718
fasfunc.c:^?fasfunc.c^A,1
@@ -28649,6 +28649,41 @@
LOCDIR 8,440
MANSEC 9,460
+src/mat/utils/matstash.c,1575
+matstash.c:^?matstash.c^A,1
+#define DEFAULT_STASH_SIZE 4,37
+PetscErrorCode MatStashCreate_Private(29,1156
+PetscErrorCode MatStashDestroy_Private(104,3534
+PetscErrorCode MatStashScatterEnd_Private(124,4236
+PETSC_INTERN PetscErrorCode MatStashScatterEnd_Ref(131,4390
+PetscErrorCode MatStashGetInfo_Private(182,5986
+PetscErrorCode MatStashSetInitialSize_Private(203,6560
+static PetscErrorCode MatStashExpand_Private(221,7036
+PetscErrorCode MatStashValuesRow_Private(258,8426
+PetscErrorCode MatStashValuesCol_Private(296,9857
+PetscErrorCode MatStashValuesRowBlocked_Private(338,11614
+PetscErrorCode MatStashValuesColBlocked_Private(389,13672
+PetscErrorCode MatStashScatterBegin_Private(437,15344
+static PetscErrorCode MatStashScatterBegin_Ref(444,15542
+PetscErrorCode MatStashScatterGetMesg_Private(619,22125
+PETSC_INTERN PetscErrorCode MatStashScatterGetMesg_Ref(626,22406
+ PetscInt row;678,24423
+ PetscInt col;679,24442
+ PetscScalar vals[vals680,24461
+} MatStashBlock;681,24522
+static PetscErrorCode MatStashSortCompress_Private(683,24540
+static PetscErrorCode MatStashBlockTypeSetUp(730,26639
+ struct DummyBlock 755,27800
+ PetscInt row,756,27824
+ PetscInt row, col;756,27824
+ PetscScalar vals;757,27852
+static PetscErrorCode MatStashBTSSend_Private(785,29145
+static PetscErrorCode MatStashBTSRecv_Private(802,29940
+static PetscErrorCode MatStashScatterBegin_BTS(820,30653
+static PetscErrorCode MatStashScatterGetMesg_BTS(924,36421
+static PetscErrorCode MatStashScatterEnd_BTS(962,38593
+PetscErrorCode MatStashScatterDestroy_BTS(993,39655
+
src/mat/utils/zerodiag.c,146
zerodiag.c:^?zerodiag.c^A,1
#define SWAP(9,167
@@ -28753,41 +28788,6 @@
PetscErrorCode PetscMatStashSpaceContiguous(31,813
PetscErrorCode PetscMatStashSpaceDestroy(52,1530
-src/mat/utils/matstash.c,1575
-matstash.c:^?matstash.c^A,1
-#define DEFAULT_STASH_SIZE 4,37
-PetscErrorCode MatStashCreate_Private(29,1156
-PetscErrorCode MatStashDestroy_Private(104,3534
-PetscErrorCode MatStashScatterEnd_Private(124,4236
-PETSC_INTERN PetscErrorCode MatStashScatterEnd_Ref(131,4390
-PetscErrorCode MatStashGetInfo_Private(182,5986
-PetscErrorCode MatStashSetInitialSize_Private(203,6560
-static PetscErrorCode MatStashExpand_Private(221,7036
-PetscErrorCode MatStashValuesRow_Private(258,8426
-PetscErrorCode MatStashValuesCol_Private(296,9857
-PetscErrorCode MatStashValuesRowBlocked_Private(338,11614
-PetscErrorCode MatStashValuesColBlocked_Private(389,13671
-PetscErrorCode MatStashScatterBegin_Private(437,15342
-static PetscErrorCode MatStashScatterBegin_Ref(444,15540
-PetscErrorCode MatStashScatterGetMesg_Private(619,22123
-PETSC_INTERN PetscErrorCode MatStashScatterGetMesg_Ref(626,22404
- PetscInt row;678,24421
- PetscInt col;679,24440
- PetscScalar vals[vals680,24459
-} MatStashBlock;681,24520
-static PetscErrorCode MatStashSortCompress_Private(683,24538
-static PetscErrorCode MatStashBlockTypeSetUp(730,26637
- struct DummyBlock 755,27798
- PetscInt row,756,27822
- PetscInt row, col;756,27822
- PetscScalar vals;757,27850
-static PetscErrorCode MatStashBTSSend_Private(785,29144
-static PetscErrorCode MatStashBTSRecv_Private(802,29939
-static PetscErrorCode MatStashScatterBegin_BTS(820,30652
-static PetscErrorCode MatStashScatterGetMesg_BTS(924,36420
-static PetscErrorCode MatStashScatterEnd_BTS(962,38592
-PetscErrorCode MatStashScatterDestroy_BTS(993,39654
-
src/mat/utils/matio.c,96
matio.c:^?matio.c^A,1
PetscErrorCode MatView_Binary_BlockSizes(4,61
@@ -28850,16 +28850,23 @@
compressedrow.c:^?compressedrow.c^A,1
PETSC_EXTERN PetscErrorCode MatCheckCompressedRow(26,1319
+src/mat/tutorials/ex5cu.cu,125
+ex5cu.cu:^?ex5cu.cu^A,1
+static char help[help1,0
+__global__ void assemble_on_gpu(18,774
+PetscErrorCode assemble_on_cpu(32,1332
+int main(43,1705
+
src/mat/tutorials/ex18.c,327
ex18.c:^?ex18.c^A,1
static char help[help1,0
static PetscErrorCode CreateFEStruct(19,1016
static PetscErrorCode DestroyFEStruct(39,1552
static PetscErrorCode CreateMatrix(47,1732
-static PetscErrorCode FillMatrixCPU(78,3105
-static PetscErrorCode FillMatrixCPUCOO(99,3855
-static PetscErrorCode FillMatrixCPUCOO3d(121,4571
-int main(138,5077
+static PetscErrorCode FillMatrixCPU(78,3106
+static PetscErrorCode FillMatrixCPUCOO(99,3856
+static PetscErrorCode FillMatrixCPUCOO3d(121,4572
+int main(138,5078
src/mat/tutorials/makefile,120
makefile:^?makefile^A,1
@@ -28901,13 +28908,6 @@
static char help[help1,0
int main(14,271
-src/mat/tutorials/ex5cu.cu,125
-ex5cu.cu:^?ex5cu.cu^A,1
-static char help[help1,0
-__global__ void assemble_on_gpu(18,774
-PetscErrorCode assemble_on_cpu(32,1331
-int main(43,1704
-
src/mat/tutorials/ex4.c,45
ex4.c:^?ex4.c^A,1
static char help[help7,67
@@ -28979,6 +28979,84 @@
static char help[help2,1
int main(15,483
+src/mat/tests/ex72mmio.h,1701
+ex72mmio.h:^?ex72mmio.h^A,1
+#define MM_IO_H9,121
+#define MM_MAX_LINE_LENGTH 13,158
+#define MatrixMarketBanner 14,191
+#define MM_MAX_TOKEN_LENGTH 15,236
+typedef char MM_typecode[MM_typecode17,268
+#define mm_is_matrix(31,754
+#define mm_is_sparse(33,809
+#define mm_is_coordinate(34,867
+#define mm_is_dense(35,925
+#define mm_is_array(36,983
+#define mm_is_complex(38,1042
+#define mm_is_real(39,1097
+#define mm_is_pattern(40,1152
+#define mm_is_integer(41,1207
+#define mm_is_symmetric(43,1263
+#define mm_is_general(44,1320
+#define mm_is_skew(45,1377
+#define mm_is_hermitian(46,1434
+#define mm_set_matrix(52,1643
+#define mm_set_coordinate(53,1702
+#define mm_set_array(54,1761
+#define mm_set_dense(55,1820
+#define mm_set_sparse(56,1879
+#define mm_set_complex(58,1944
+#define mm_set_real(59,2000
+#define mm_set_pattern(60,2056
+#define mm_set_integer(61,2112
+#define mm_set_symmetric(63,2169
+#define mm_set_general(64,2227
+#define mm_set_skew(65,2285
+#define mm_set_hermitian(66,2343
+#define mm_clear_typecode(68,2402
+#define mm_initialize_typecode(70,2518
+#define MM_COULD_NOT_READ_FILE 74,2667
+#define MM_PREMATURE_EOF 75,2702
+#define MM_NOT_MTX 76,2737
+#define MM_NO_HEADER 77,2772
+#define MM_UNSUPPORTED_TYPE 78,2807
+#define MM_LINE_TOO_LONG 79,2842
+#define MM_COULD_NOT_WRITE_FILE 80,2877
+#define MM_MTX_STR 98,3567
+#define MM_ARRAY_STR 99,3602
+#define MM_DENSE_STR 100,3636
+#define MM_COORDINATE_STR 101,3670
+#define MM_SPARSE_STR 102,3709
+#define MM_COMPLEX_STR 103,3748
+#define MM_REAL_STR 104,3784
+#define MM_INT_STR 105,3817
+#define MM_GENERAL_STR 106,3853
+#define MM_SYMM_STR 107,3889
+#define MM_HERM_STR 108,3927
+#define MM_SKEW_STR 109,3965
+#define MM_PATTERN_STR 110,4008
+
+src/mat/tests/ex42.c,44
+ex42.c:^?ex42.c^A,1
+static char help[help2,1
+int main(11,444
+
+src/mat/tests/ex24.c,79
+ex24.c:^?ex24.c^A,1
+static char help[help2,1
+PetscErrorCode FormJacobian(6,210
+int main(25,754
+
+src/mat/tests/ex199.c,43
+ex199.c:^?ex199.c^A,1
+static char help[help2,1
+int main(6,102
+
+src/mat/tests/ex1.c,92
+ex1.c:^?ex1.c^A,1
+static char help[help2,1
+static PetscErrorCode createMatsAndVecs(8,327
+int main(87,2925
+
src/mat/tests/ex59.c,42
ex59.c:^?ex59.c^A,1
static char help[help2,1
@@ -29191,62 +29269,6 @@
static char help[help2,1
int main(17,485
-src/mat/tests/ex72mmio.h,1701
-ex72mmio.h:^?ex72mmio.h^A,1
-#define MM_IO_H9,121
-#define MM_MAX_LINE_LENGTH 13,158
-#define MatrixMarketBanner 14,191
-#define MM_MAX_TOKEN_LENGTH 15,236
-typedef char MM_typecode[MM_typecode17,268
-#define mm_is_matrix(31,754
-#define mm_is_sparse(33,809
-#define mm_is_coordinate(34,867
-#define mm_is_dense(35,925
-#define mm_is_array(36,983
-#define mm_is_complex(38,1042
-#define mm_is_real(39,1097
-#define mm_is_pattern(40,1152
-#define mm_is_integer(41,1207
-#define mm_is_symmetric(43,1263
-#define mm_is_general(44,1320
-#define mm_is_skew(45,1377
-#define mm_is_hermitian(46,1434
-#define mm_set_matrix(52,1643
-#define mm_set_coordinate(53,1702
-#define mm_set_array(54,1761
-#define mm_set_dense(55,1820
-#define mm_set_sparse(56,1879
-#define mm_set_complex(58,1944
-#define mm_set_real(59,2000
-#define mm_set_pattern(60,2056
-#define mm_set_integer(61,2112
-#define mm_set_symmetric(63,2169
-#define mm_set_general(64,2227
-#define mm_set_skew(65,2285
-#define mm_set_hermitian(66,2343
-#define mm_clear_typecode(68,2402
-#define mm_initialize_typecode(70,2518
-#define MM_COULD_NOT_READ_FILE 74,2667
-#define MM_PREMATURE_EOF 75,2702
-#define MM_NOT_MTX 76,2737
-#define MM_NO_HEADER 77,2772
-#define MM_UNSUPPORTED_TYPE 78,2807
-#define MM_LINE_TOO_LONG 79,2842
-#define MM_COULD_NOT_WRITE_FILE 80,2877
-#define MM_MTX_STR 98,3567
-#define MM_ARRAY_STR 99,3602
-#define MM_DENSE_STR 100,3636
-#define MM_COORDINATE_STR 101,3670
-#define MM_SPARSE_STR 102,3709
-#define MM_COMPLEX_STR 103,3748
-#define MM_REAL_STR 104,3784
-#define MM_INT_STR 105,3817
-#define MM_GENERAL_STR 106,3853
-#define MM_SYMM_STR 107,3889
-#define MM_HERM_STR 108,3927
-#define MM_SKEW_STR 109,3965
-#define MM_PATTERN_STR 110,4008
-
src/mat/tests/ex72mmio.c,495
ex72mmio.c:^?ex72mmio.c^A,1
static char mm_buffer[mm_buffer14,206
@@ -29425,11 +29447,6 @@
static char help[help2,1
int main(6,102
-src/mat/tests/ex42.c,44
-ex42.c:^?ex42.c^A,1
-static char help[help2,1
-int main(11,444
-
src/mat/tests/ex41.c,44
ex41.c:^?ex41.c^A,1
static char help[help2,1
@@ -29647,12 +29664,6 @@
static char help[help1,0
int main(6,105
-src/mat/tests/ex24.c,79
-ex24.c:^?ex24.c^A,1
-static char help[help2,1
-PetscErrorCode FormJacobian(6,208
-int main(25,752
-
src/mat/tests/ex239.c,43
ex239.c:^?ex239.c^A,1
static char help[help1,0
@@ -29912,11 +29923,6 @@
#define SyncDevice(43,1592
int main(46,1623
-src/mat/tests/ex199.c,43
-ex199.c:^?ex199.c^A,1
-static char help[help2,1
-int main(6,101
-
src/mat/tests/ex198.c,43
ex198.c:^?ex198.c^A,1
static char help[help1,0
@@ -30268,11 +30274,6 @@
static char help[help2,1
int main(6,68
-src/mat/tests/ex131.c,42
-ex131.c:^?ex131.c^A,1
-static char help[help2,1
-int main(6,90
-
src/mat/tests/ex16f90.F90,0
ex16f90.F90:^?ex16f90.F90^A,1
@@ -30387,9 +30388,6 @@
src/sys/tutorials/ex2f.F90,0
ex2f.F90:^?ex2f.F90^A,1
-src/sys/tutorials/ex3f.F90,0
-ex3f.F90:^?ex3f.F90^A,1
-
src/sys/tutorials/ex3f90.F90,0
ex3f90.F90:^?ex3f90.F90^A,1
@@ -30402,6 +30400,14 @@
src/sys/tutorials/ex8f90.F90,0
ex8f90.F90:^?ex8f90.F90^A,1
+src/sys/tutorials/ex3f.F90,0
+ex3f.F90:^?ex3f.F90^A,1
+
+src/mat/tests/ex131.c,42
+ex131.c:^?ex131.c^A,1
+static char help[help2,1
+int main(6,90
+
src/mat/tests/ex130.c,43
ex130.c:^?ex130.c^A,1
static char help[help2,1
@@ -30611,12 +30617,6 @@
static char help[help2,1
int main(6,98
-src/mat/tests/ex1.c,92
-ex1.c:^?ex1.c^A,1
-static char help[help2,1
-static PetscErrorCode createMatsAndVecs(8,327
-int main(87,2925
-
src/mat/tests/ex140.py,118
ex140.py:^?ex140.py^A,1
class Matrix(3,28
@@ -30893,6 +30893,18 @@
PETSC_EXTERN void matpartitioningsettype_(33,1349
PETSC_EXTERN void matpartitioningviewfromoptions_(40,1593
+src/mat/order/wbm.c,184
+wbm.c:^?wbm.c^A,1
+ #define mc64id_dist 15,441
+ #define mc64ad_dist 16,477
+ #define mc64id_dist 19,560
+ #define mc64ad_dist 20,596
+PETSC_INTERN PetscErrorCode MatGetOrdering_WBM(32,1139
+
+src/mat/order/degree.c,41
+degree.c:^?degree.c^A,1
+PetscErrorCode SPARSEPACKdegree(27,1075
+
src/mat/order/sorder.c,389
sorder.c:^?sorder.c^A,1
PetscFunctionList MatOrderingList 9,194
@@ -30904,14 +30916,6 @@
PetscErrorCode MatGetOrdering(161,5759
PetscErrorCode MatGetOrderingList(247,9612
-src/mat/order/wbm.c,184
-wbm.c:^?wbm.c^A,1
- #define mc64id_dist 15,440
- #define mc64ad_dist 16,476
- #define mc64id_dist 19,559
- #define mc64ad_dist 20,595
-PETSC_INTERN PetscErrorCode MatGetOrdering_WBM(32,1138
-
src/mat/order/sregis.c,47
sregis.c:^?sregis.c^A,1
PetscErrorCode MatOrderingRegisterAll(40,1702
@@ -31000,10 +31004,6 @@
fn1wd.c:^?fn1wd.c^A,1
PetscErrorCode SPARSEPACKfn1wd(31,1797
-src/mat/order/degree.c,41
-degree.c:^?degree.c^A,1
-PetscErrorCode SPARSEPACKdegree(27,1074
-
src/mat/order/metisnd/metisnd.c,58
metisnd.c:^?metisnd.c^A,1
PETSC_INTERN PetscErrorCode MatGetOrdering_METISND(9,173
@@ -31058,19 +31058,19 @@
PetscErrorCode MatFDColoringSetF(10,239
static PetscErrorCode MatFDColoringView_Draw_Zoom(23,489
static PetscErrorCode MatFDColoringView_Draw(44,1074
-PetscErrorCode MatFDColoringView(97,2749
-PetscErrorCode MatFDColoringSetParameters(169,5620
-PetscErrorCode MatFDColoringSetBlockSize(194,6418
-PetscErrorCode MatFDColoringSetUp(222,7415
-PetscErrorCode MatFDColoringGetFunction(257,8601
-PetscErrorCode MatFDColoringSetFunction(293,9884
-PetscErrorCode MatFDColoringSetFromOptions(331,11211
-PetscErrorCode MatFDColoringSetType(382,13555
-PetscErrorCode MatFDColoringViewFromOptions(396,14213
-PetscErrorCode MatFDColoringCreate(436,15768
-PetscErrorCode MatFDColoringDestroy(489,17873
-PetscErrorCode MatFDColoringGetPerturbedColumns(551,19850
-PetscErrorCode MatFDColoringApply(585,21171
+PetscErrorCode MatFDColoringView(97,2756
+PetscErrorCode MatFDColoringSetParameters(169,5627
+PetscErrorCode MatFDColoringSetBlockSize(194,6432
+PetscErrorCode MatFDColoringSetUp(222,7436
+PetscErrorCode MatFDColoringGetFunction(257,8629
+PetscErrorCode MatFDColoringSetFunction(293,9919
+PetscErrorCode MatFDColoringSetFromOptions(331,11253
+PetscErrorCode MatFDColoringSetType(382,13604
+PetscErrorCode MatFDColoringViewFromOptions(396,14263
+PetscErrorCode MatFDColoringCreate(436,15825
+PetscErrorCode MatFDColoringDestroy(489,17937
+PetscErrorCode MatFDColoringGetPerturbedColumns(553,19921
+PetscErrorCode MatFDColoringApply(587,21249
src/mat/matfd/makefile,101
makefile:^?makefile^A,1
@@ -31104,7 +31104,7 @@
PETSC_EXTERN void matfdcoloringview_(76,3597
PETSC_EXTERN void matfdcoloringsettype_(84,3791
-src/mat/interface/matrix.c,21063
+src/mat/interface/matrix.c,21064
matrix.c:^?matrix.c^A,1
PetscClassId MAT_CLASSID;12,323
PetscClassId MAT_COLORING_CLASSID;13,349
@@ -31229,251 +31229,251 @@
PetscLogEvent MAT_H2Opus_Build, MAT_H2Opus_Compress, MAT_H2Opus_Orthog,46,3080
PetscLogEvent MAT_H2Opus_Build, MAT_H2Opus_Compress, MAT_H2Opus_Orthog, MAT_H2Opus_LR;46,3080
const char *const MatFactorTypes[MatFactorTypes48,3168
-PetscErrorCode MatSetRandom(75,4123
-PetscErrorCode MatFactorGetErrorZeroPivot(128,5996
-PetscErrorCode MatFactorGetError(158,6870
-PetscErrorCode MatFactorClearError(183,7602
-PETSC_INTERN PetscErrorCode MatFindNonzeroRowsOrCols_Basic(193,7887
-PetscErrorCode MatFindNonzeroRows(264,9990
-PetscErrorCode MatFindZeroRows(293,10940
-PetscErrorCode MatGetDiagonalBlock(336,12209
-PetscErrorCode MatGetTrace(369,13108
-PetscErrorCode MatRealPart(395,13655
-PetscErrorCode MatGetGhosts(426,14607
-PetscErrorCode MatImaginaryPart(453,15443
-PetscErrorCode MatMissingDiagonal(481,16298
-PetscErrorCode MatGetRow(555,19215
-PetscErrorCode MatConjugate(585,20447
-PetscErrorCode MatRestoreRow(634,22013
-PetscErrorCode MatGetRowUpperTriangular(664,23150
-PetscErrorCode MatRestoreRowUpperTriangular(692,24030
-PetscErrorCode MatSetOptionsPrefix(727,25262
-PetscErrorCode MatSetOptionsPrefixFactor(756,26314
-PetscErrorCode MatAppendOptionsPrefixFactor(794,27932
-PetscErrorCode MatAppendOptionsPrefix(835,29202
-PetscErrorCode MatGetOptionsPrefix(863,29952
-PetscErrorCode MatResetPreallocation(891,30774
-PetscErrorCode MatSetUp(921,31662
-PetscErrorCode MatViewFromOptions(974,33646
-PetscErrorCode MatView(1062,37849
-PETSC_UNUSED static int TV_display_type(1160,42895
-PetscErrorCode MatLoad(1289,48852
-static PetscErrorCode MatDestroy_Redundant(1315,49819
-PetscErrorCode MatDestroy(1360,51297
-PetscErrorCode MatSetValues(1438,54471
-PetscErrorCode MatSetValuesIS(1526,58576
-PetscErrorCode MatSetValuesRowLocal(1568,59905
-PetscErrorCode MatSetValuesRow(1606,61202
-PetscErrorCode MatSetValuesStencil(1697,65261
-PetscErrorCode MatSetValuesBlockedStencil(1807,69650
-PetscErrorCode MatSetStencil(1879,72216
-PetscErrorCode MatSetValuesBlocked(1964,75479
-PetscErrorCode MatGetValues(2056,79636
-PetscErrorCode MatGetValuesLocal(2106,81961
-PetscErrorCode MatSetValuesBatch(2166,84998
-PetscErrorCode MatSetLocalToGlobalMapping(2203,86498
-PetscErrorCode MatGetLocalToGlobalMapping(2234,87486
-PetscErrorCode MatSetLayouts(2267,88361
-PetscErrorCode MatGetLayouts(2292,88986
-PetscErrorCode MatSetValuesLocal(2343,90877
-PetscErrorCode MatSetValuesBlockedLocal(2429,94798
-PetscErrorCode MatMultDiagonalBlock(2511,98468
-PetscErrorCode MatMult(2550,99724
-PetscErrorCode MatMultTranspose(2600,102112
-PetscErrorCode MatMultHermitianTranspose(2658,104988
-PetscErrorCode MatMultAdd(2719,107595
-PetscErrorCode MatMultTransposeAdd(2767,109865
-PetscErrorCode MatMultHermitianTransposeAdd(2816,112164
-PetscErrorCode MatGetFactorType(2874,114845
-PetscErrorCode MatSetFactorType(2898,115639
-PetscErrorCode MatGetInfo(2969,117865
-PetscErrorCode MatGetInfo_External(2984,118292
-PetscErrorCode MatLUFactor(3027,119906
-PetscErrorCode MatILUFactor(3084,122091
-PetscErrorCode MatLUFactorSymbolic(3135,124299
-PetscErrorCode MatLUFactorNumeric(3193,126663
-PetscErrorCode MatCholeskyFactor(3251,129166
-PetscErrorCode MatCholeskyFactorSymbolic(3310,131437
-PetscErrorCode MatCholeskyFactorNumeric(3367,133851
-PetscErrorCode MatQRFactor(3428,136607
-PetscErrorCode MatQRFactorSymbolic(3475,138573
-PetscErrorCode MatQRFactorNumeric(3526,140549
-PetscErrorCode MatSolve(3580,142741
-static PetscErrorCode MatMatSolve_Basic(3606,144168
-PetscErrorCode MatMatSolve(3666,146536
-PetscErrorCode MatMatSolveTranspose(3712,148535
-PetscErrorCode MatMatTransposeSolve(3760,150991
-PetscErrorCode MatForwardSolve(3815,153363
-PetscErrorCode MatBackwardSolve(3868,155626
-PetscErrorCode MatSolveAdd(3912,157468
-PetscErrorCode MatSolveTranspose(3983,160396
-PetscErrorCode MatSolveTransposeAdd(4034,162464
-PetscErrorCode MatSOR(4140,166913
-PetscErrorCode MatCopy_Basic(4169,168758
-PetscErrorCode MatCopy(4215,170177
-PetscErrorCode MatConvert(4279,172866
-PetscErrorCode MatFactorGetSolverType(4447,181150
-typedef struct _MatSolverTypeForSpecifcType *MatSolverTypeForSpecifcType;MatSolverTypeForSpecifcType4462,181711
-struct _MatSolverTypeForSpecifcType 4463,181785
- MatType mtype;4464,181823
- PetscErrorCode (*createfactor[createfactor4466,181877
- MatSolverTypeForSpecifcType next;4467,181964
-typedef struct _MatSolverTypeHolder *MatSolverTypeHolder;MatSolverTypeHolder4470,182004
-struct _MatSolverTypeHolder 4471,182062
- char *name;name4472,182092
- MatSolverTypeForSpecifcType handlers;4473,182128
- MatSolverTypeHolder next;4474,182168
-static MatSolverTypeHolder MatSolverTypeHolders 4477,182208
-PetscErrorCode MatSolverTypeRegister(4492,182835
-PetscErrorCode MatSolverTypeGet(4555,185380
-PetscErrorCode MatSolverTypeDestroy(4619,187521
-PetscErrorCode MatFactorGetCanUseOrdering(4661,188772
-PetscErrorCode MatFactorGetPreferredOrdering(4683,189416
-PetscErrorCode MatGetFactor(4728,191604
-PetscErrorCode MatGetFactorAvailable(4784,194381
-PetscErrorCode MatDuplicate(4827,196138
-PetscErrorCode MatGetDiagonal(4889,198123
-PetscErrorCode MatGetRowMin(4927,199329
-PetscErrorCode MatGetRowMinAbs(4972,200676
-PetscErrorCode MatGetRowMax(5019,202230
-PetscErrorCode MatGetRowMaxAbs(5064,203579
-PetscErrorCode MatGetRowSum(5105,204798
-PetscErrorCode MatTransposeSetPrecursor(5142,206256
-PetscErrorCode MatTranspose(5191,208287
-PetscErrorCode MatTransposeSymbolic(5248,211078
-PetscErrorCode MatTransposeCheckNonzeroState_Private(5264,211833
-PetscErrorCode MatIsTranspose(5305,213536
-PetscErrorCode MatHermitianTranspose(5344,214954
-PetscErrorCode MatIsHermitianTranspose(5377,215813
-PetscErrorCode MatPermute(5421,217465
-PetscErrorCode MatEqual(5461,218807
-PetscErrorCode MatDiagonalScale(5505,220494
-PetscErrorCode MatScale(5547,221763
-PetscErrorCode MatNorm(5583,222921
-static PetscInt MatAssemblyEnd_InUse 5602,223590
-PetscErrorCode MatAssemblyBegin(5633,225067
-PetscErrorCode MatAssembled(5669,226186
-PetscErrorCode MatAssemblyEnd(5705,227683
-PetscErrorCode MatSetOption(5875,236763
-PetscErrorCode MatGetOption(5984,240925
-PetscErrorCode MatZeroEntries(6041,242983
-PetscErrorCode MatZeroRowsColumns(6097,245725
-PetscErrorCode MatZeroRowsColumnsIS(6134,247348
-PetscErrorCode MatZeroRows(6204,250727
-PetscErrorCode MatZeroRowsIS(6241,252327
-PetscErrorCode MatZeroRowsStencil(6303,254754
-PetscErrorCode MatZeroRowsColumnsStencil(6384,258012
-PetscErrorCode MatZeroRowsLocal(6446,260480
-PetscErrorCode MatZeroRowsLocalIS(6499,262902
-PetscErrorCode MatZeroRowsColumnsLocal(6544,264805
-PetscErrorCode MatZeroRowsColumnsLocalIS(6593,267135
-PetscErrorCode MatGetSize(6631,268278
-PetscErrorCode MatGetLocalSize(6657,269062
-PetscErrorCode MatGetOwnershipRangeColumn(6685,270129
-PetscErrorCode MatGetOwnershipRange(6722,271621
-PetscErrorCode MatGetOwnershipRanges(6752,272763
-PetscErrorCode MatGetOwnershipRangesColumn(6778,273717
-PetscErrorCode MatGetOwnershipIS(6806,274808
-PetscErrorCode MatILUFactorSymbolic(6864,276976
-PetscErrorCode MatICCFactorSymbolic(6926,279704
-PetscErrorCode MatCreateSubMatrices(7003,283255
-PetscErrorCode MatCreateSubMatricesMPI(7063,285604
-PetscErrorCode MatDestroyMatrices(7113,287320
-PetscErrorCode MatDestroySubMatrices(7147,288334
-PetscErrorCode MatGetSeqNonzeroStructure(7181,289318
-PetscErrorCode MatDestroySeqNonzeroStructure(7213,290385
-PetscErrorCode MatIncreaseOverlap(7246,291522
-PetscErrorCode MatIncreaseOverlapSplit(7296,293399
-PetscErrorCode MatGetBlockSize(7338,294831
-PetscErrorCode MatGetBlockSizes(7369,295725
-PetscErrorCode MatSetBlockSize(7400,296805
- PetscInt n;7410,297067
- IS *is;is7411,297089
- Mat *mat;mat7412,297112
- PetscObjectState nonzerostate;7413,297136
- Mat C;7414,297169
-} EnvelopeData;7415,297191
-static PetscErrorCode EnvelopeDataDestroy(7417,297208
-static PetscErrorCode MatComputeVariableBlockEnvelope(7441,297950
-PetscErrorCode MatInvertVariableBlockEnvelope(7600,304087
-PetscErrorCode MatSetVariableBlockSizes(7657,306467
-PetscErrorCode MatGetVariableBlockSizes(7690,307766
-PetscErrorCode MatSetBlockSizes(7723,309019
-PetscErrorCode MatSetBlockSizesFromMats(7769,310617
-PetscErrorCode MatResidual(7797,311436
-PetscErrorCode MatGetRowIJ(7861,313884
-PetscErrorCode MatGetColumnIJ(7905,315674
-PetscErrorCode MatRestoreRowIJ(7951,317435
-PetscErrorCode MatRestoreColumnIJ(7995,319038
-PetscErrorCode MatColoringPatch(8034,320209
-PetscErrorCode MatSetUnfactored(8086,322056
-PetscErrorCode MatCreateSubMatrix(8290,327892
-PetscErrorCode MatPropagateSymmetryOptions(8396,332206
-PetscErrorCode MatStashSetInitialSize(8440,333804
-PetscErrorCode MatInterpolateAdd(8471,334626
-PetscErrorCode MatInterpolate(8508,335546
-PetscErrorCode MatRestrict(8543,336360
-PetscErrorCode MatMatInterpolateAdd(8582,337412
-PetscErrorCode MatMatInterpolate(8659,340178
-PetscErrorCode MatMatRestrict(8687,340921
-PetscErrorCode MatGetNullSpace(8707,341376
-PetscErrorCode MatSetNullSpace(8751,343756
-PetscErrorCode MatGetTransposeNullSpace(8776,344602
-PetscErrorCode MatSetTransposeNullSpace(8804,345537
-PetscErrorCode MatSetNearNullSpace(8834,346648
-PetscErrorCode MatGetNearNullSpace(8862,347430
-PetscErrorCode MatICCFactor(8900,348575
-PetscErrorCode MatDiagonalScaleLocal(8935,349842
-PetscErrorCode MatGetInertia(8982,351293
-PetscErrorCode MatSolves(9014,352384
-PetscErrorCode MatIsSymmetric(9055,354053
-PetscErrorCode MatIsHermitian(9100,355771
-PetscErrorCode MatIsSymmetricKnown(9143,357427
-PetscErrorCode MatIsSPDKnown(9180,358770
-PetscErrorCode MatIsHermitianKnown(9218,360116
-PetscErrorCode MatIsStructurallySymmetric(9254,361395
-PetscErrorCode MatIsStructurallySymmetricKnown(9290,362903
-PetscErrorCode MatStashGetInfo(9324,363939
-PetscErrorCode MatCreateVecs(9354,365046
-PetscErrorCode MatFactorInfoInitialize(9419,367577
-PetscErrorCode MatFactorSetSchurIS(9448,368646
-PetscErrorCode MatFactorCreateSchurComplement(9498,371125
-PetscErrorCode MatFactorGetSchurComplement(9547,373080
-PetscErrorCode MatFactorRestoreSchurComplement(9572,373972
-PetscErrorCode MatFactorSolveSchurComplementTranspose(9604,374989
-PetscErrorCode MatFactorSolveSchurComplement(9648,376470
-PetscErrorCode MatFactorInvertSchurComplement(9690,377861
-PetscErrorCode MatFactorFactorizeSchurComplement(9717,378670
-PetscErrorCode MatPtAP(9755,379991
-PetscErrorCode MatRARt(9810,382172
-static PetscErrorCode MatProduct_Private(9835,383319
-PetscErrorCode MatMatMult(9923,387365
-PetscErrorCode MatMatTransposeMult(9966,389192
-PetscErrorCode MatTransposeMatMult(10005,390667
-PetscErrorCode MatMatMatMult(10045,392103
-PetscErrorCode MatCreateRedundantMatrix(10096,394207
-PetscErrorCode MatGetMultiProcBlock(10232,400052
-PetscErrorCode MatGetLocalSubMatrix(10277,402013
-PetscErrorCode MatRestoreLocalSubMatrix(10310,403122
-PetscErrorCode MatFindZeroDiagonals(10345,404150
-PetscErrorCode MatFindOffBlockDiagonalEntries(10393,405803
-PetscErrorCode MatInvertBlockDiagonal(10427,406925
-PetscErrorCode MatInvertVariableBlockDiagonal(10459,408090
-PetscErrorCode MatInvertBlockDiagonalMat(10485,409021
-PetscErrorCode MatTransposeColoringDestroy(10522,410309
-PetscErrorCode MatTransColoringApplySpToDen(10566,411650
-PetscErrorCode MatTransColoringApplyDenToSp(10600,412786
-PetscErrorCode MatTransposeColoringCreate(10630,413789
-PetscErrorCode MatGetNonzeroState(10675,415577
-PetscErrorCode MatCreateMPIMatConcatenateSeqMat(10705,416388
-PetscErrorCode MatSubdomainsCreateCoalesce(10748,417789
-PetscErrorCode MatGalerkin(10797,419649
-PetscErrorCode MatSetOperation(10865,422155
-PetscErrorCode MatGetOperation(10902,423367
-PetscErrorCode MatHasOperation(10932,424222
-PetscErrorCode MatHasCongruentLayouts(10969,425183
-PetscErrorCode MatSetInf(10989,425931
-PETSC_EXTERN PetscErrorCode MatCreateGraph(11015,426752
+PetscErrorCode MatSetRandom(79,4216
+PetscErrorCode MatFactorGetErrorZeroPivot(132,6096
+PetscErrorCode MatFactorGetError(162,6977
+PetscErrorCode MatFactorClearError(187,7716
+PETSC_INTERN PetscErrorCode MatFindNonzeroRowsOrCols_Basic(197,8001
+PetscErrorCode MatFindNonzeroRows(268,10108
+PetscErrorCode MatFindZeroRows(297,11062
+PetscErrorCode MatGetDiagonalBlock(340,12319
+PetscErrorCode MatGetTrace(373,13218
+PetscErrorCode MatRealPart(399,13772
+PetscErrorCode MatGetGhosts(430,14723
+PetscErrorCode MatImaginaryPart(457,15566
+PetscErrorCode MatMissingDiagonal(485,16421
+PetscErrorCode MatGetRow(559,19340
+PetscErrorCode MatConjugate(589,20579
+PetscErrorCode MatRestoreRow(638,22151
+PetscErrorCode MatGetRowUpperTriangular(668,23295
+PetscErrorCode MatRestoreRowUpperTriangular(696,24182
+PetscErrorCode MatSetOptionsPrefix(731,25416
+PetscErrorCode MatSetOptionsPrefixFactor(760,26470
+PetscErrorCode MatAppendOptionsPrefixFactor(798,28090
+PetscErrorCode MatAppendOptionsPrefix(839,29355
+PetscErrorCode MatGetOptionsPrefix(867,30112
+PetscErrorCode MatResetPreallocation(895,30936
+PetscErrorCode MatSetUp(925,31819
+PetscErrorCode MatViewFromOptions(978,33798
+PetscErrorCode MatView(1066,38001
+PETSC_UNUSED static int TV_display_type(1164,43047
+PetscErrorCode MatLoad(1293,49011
+static PetscErrorCode MatDestroy_Redundant(1319,49978
+PetscErrorCode MatDestroy(1364,51451
+PetscErrorCode MatSetValues(1442,54625
+PetscErrorCode MatSetValuesIS(1530,58737
+PetscErrorCode MatSetValuesRowLocal(1572,60072
+PetscErrorCode MatSetValuesRow(1610,61378
+PetscErrorCode MatSetValuesStencil(1701,65439
+PetscErrorCode MatSetValuesBlockedStencil(1811,69830
+PetscErrorCode MatSetStencil(1883,72396
+PetscErrorCode MatSetValuesBlocked(1970,75668
+PetscErrorCode MatGetValues(2064,79854
+PetscErrorCode MatGetValuesLocal(2116,82186
+PetscErrorCode MatSetValuesBatch(2176,85223
+PetscErrorCode MatSetLocalToGlobalMapping(2213,86723
+PetscErrorCode MatGetLocalToGlobalMapping(2244,87711
+PetscErrorCode MatSetLayouts(2277,88588
+PetscErrorCode MatGetLayouts(2302,89220
+PetscErrorCode MatSetValuesLocal(2355,91125
+PetscErrorCode MatSetValuesBlockedLocal(2443,95053
+PetscErrorCode MatMultDiagonalBlock(2525,98727
+PetscErrorCode MatMult(2563,99925
+PetscErrorCode MatMultTranspose(2613,102317
+PetscErrorCode MatMultHermitianTranspose(2671,105197
+PetscErrorCode MatMultAdd(2732,107808
+PetscErrorCode MatMultTransposeAdd(2780,110082
+PetscErrorCode MatMultHermitianTransposeAdd(2829,112385
+PetscErrorCode MatGetFactorType(2887,115073
+PetscErrorCode MatSetFactorType(2911,115874
+PetscErrorCode MatGetInfo(2979,118038
+PetscErrorCode MatGetInfo_External(2994,118465
+PetscErrorCode MatLUFactor(3036,120019
+PetscErrorCode MatILUFactor(3095,122217
+PetscErrorCode MatLUFactorSymbolic(3146,124432
+PetscErrorCode MatLUFactorNumeric(3204,126803
+PetscErrorCode MatCholeskyFactor(3262,129313
+PetscErrorCode MatCholeskyFactorSymbolic(3321,131591
+PetscErrorCode MatCholeskyFactorNumeric(3378,134012
+PetscErrorCode MatQRFactor(3439,136775
+PetscErrorCode MatQRFactorSymbolic(3486,138748
+PetscErrorCode MatQRFactorNumeric(3537,140731
+PetscErrorCode MatSolve(3590,142864
+static PetscErrorCode MatMatSolve_Basic(3616,144291
+PetscErrorCode MatMatSolve(3676,146678
+PetscErrorCode MatMatSolveTranspose(3722,148683
+PetscErrorCode MatMatTransposeSolve(3770,151141
+PetscErrorCode MatForwardSolve(3825,153524
+PetscErrorCode MatBackwardSolve(3878,155798
+PetscErrorCode MatSolveAdd(3922,157651
+PetscErrorCode MatSolveTranspose(3993,160590
+PetscErrorCode MatSolveTransposeAdd(4044,162669
+PetscErrorCode MatSOR(4149,167052
+PetscErrorCode MatCopy_Basic(4178,168897
+PetscErrorCode MatCopy(4224,170311
+PetscErrorCode MatConvert(4288,173000
+PetscErrorCode MatFactorGetSolverType(4455,181277
+typedef struct _MatSolverTypeForSpecifcType *MatSolverTypeForSpecifcType;MatSolverTypeForSpecifcType4470,181838
+struct _MatSolverTypeForSpecifcType 4471,181912
+ MatType mtype;4472,181950
+ PetscErrorCode (*createfactor[createfactor4474,182004
+ MatSolverTypeForSpecifcType next;4475,182091
+typedef struct _MatSolverTypeHolder *MatSolverTypeHolder;MatSolverTypeHolder4478,182131
+struct _MatSolverTypeHolder 4479,182189
+ char *name;name4480,182219
+ MatSolverTypeForSpecifcType handlers;4481,182255
+ MatSolverTypeHolder next;4482,182295
+static MatSolverTypeHolder MatSolverTypeHolders 4485,182335
+PetscErrorCode MatSolverTypeRegister(4500,182969
+PetscErrorCode MatSolverTypeGet(4563,185523
+PetscErrorCode MatSolverTypeDestroy(4627,187664
+PetscErrorCode MatFactorGetCanUseOrdering(4669,188922
+PetscErrorCode MatFactorGetPreferredOrdering(4691,189573
+PetscErrorCode MatGetFactor(4736,191768
+PetscErrorCode MatGetFactorAvailable(4792,194552
+PetscErrorCode MatDuplicate(4835,196316
+PetscErrorCode MatGetDiagonal(4897,198301
+PetscErrorCode MatGetRowMin(4935,199514
+PetscErrorCode MatGetRowMinAbs(4980,200870
+PetscErrorCode MatGetRowMax(5027,202431
+PetscErrorCode MatGetRowMaxAbs(5072,203789
+PetscErrorCode MatGetRowSum(5113,205015
+PetscErrorCode MatTransposeSetPrecursor(5150,206480
+PetscErrorCode MatTranspose(5199,208518
+PetscErrorCode MatTransposeSymbolic(5256,211311
+PetscErrorCode MatTransposeCheckNonzeroState_Private(5272,212066
+PetscErrorCode MatIsTranspose(5313,213771
+PetscErrorCode MatHermitianTranspose(5352,215196
+PetscErrorCode MatIsHermitianTranspose(5385,216057
+PetscErrorCode MatPermute(5429,217716
+PetscErrorCode MatEqual(5469,219053
+PetscErrorCode MatDiagonalScale(5513,220746
+PetscErrorCode MatScale(5555,222015
+PetscErrorCode MatNorm(5591,223173
+static PetscInt MatAssemblyEnd_InUse 5610,223842
+PetscErrorCode MatAssemblyBegin(5641,225319
+PetscErrorCode MatAssembled(5677,226438
+PetscErrorCode MatAssemblyEnd(5713,227935
+PetscErrorCode MatSetOption(5883,237016
+PetscErrorCode MatGetOption(5992,241185
+PetscErrorCode MatZeroEntries(6049,243243
+PetscErrorCode MatZeroRowsColumns(6105,246021
+PetscErrorCode MatZeroRowsColumnsIS(6142,247651
+PetscErrorCode MatZeroRows(6212,251045
+PetscErrorCode MatZeroRowsIS(6249,252654
+PetscErrorCode MatZeroRowsStencil(6311,255088
+PetscErrorCode MatZeroRowsColumnsStencil(6392,258353
+PetscErrorCode MatZeroRowsLocal(6454,260828
+PetscErrorCode MatZeroRowsLocalIS(6507,263257
+PetscErrorCode MatZeroRowsColumnsLocal(6552,265167
+PetscErrorCode MatZeroRowsColumnsLocalIS(6601,267504
+PetscErrorCode MatGetSize(6640,268652
+PetscErrorCode MatGetLocalSize(6666,269436
+PetscErrorCode MatGetOwnershipRangeColumn(6694,270503
+PetscErrorCode MatGetOwnershipRange(6731,272002
+PetscErrorCode MatGetOwnershipRanges(6761,273144
+PetscErrorCode MatGetOwnershipRangesColumn(6787,274098
+PetscErrorCode MatGetOwnershipIS(6815,275196
+PetscErrorCode MatILUFactorSymbolic(6875,277376
+PetscErrorCode MatICCFactorSymbolic(6939,280117
+PetscErrorCode MatCreateSubMatrices(7016,283668
+PetscErrorCode MatCreateSubMatricesMPI(7076,286024
+PetscErrorCode MatDestroyMatrices(7128,287741
+PetscErrorCode MatDestroySubMatrices(7164,288763
+PetscErrorCode MatGetSeqNonzeroStructure(7198,289747
+PetscErrorCode MatDestroySeqNonzeroStructure(7230,290814
+PetscErrorCode MatIncreaseOverlap(7263,291951
+PetscErrorCode MatIncreaseOverlapSplit(7313,293835
+PetscErrorCode MatGetBlockSize(7355,295274
+PetscErrorCode MatGetBlockSizes(7386,296175
+PetscErrorCode MatSetBlockSize(7417,297262
+ PetscInt n;7427,297524
+ IS *is;is7428,297546
+ Mat *mat;mat7429,297569
+ PetscObjectState nonzerostate;7430,297593
+ Mat C;7431,297626
+} EnvelopeData;7432,297648
+static PetscErrorCode EnvelopeDataDestroy(7434,297665
+static PetscErrorCode MatComputeVariableBlockEnvelope(7458,298407
+PetscErrorCode MatInvertVariableBlockEnvelope(7617,304546
+PetscErrorCode MatSetVariableBlockSizes(7674,306933
+PetscErrorCode MatGetVariableBlockSizes(7707,308239
+PetscErrorCode MatSetBlockSizes(7740,309499
+PetscErrorCode MatSetBlockSizesFromMats(7786,311104
+PetscErrorCode MatResidual(7814,311923
+PetscErrorCode MatGetRowIJ(7878,314377
+PetscErrorCode MatGetColumnIJ(7922,316174
+PetscErrorCode MatRestoreRowIJ(7968,317950
+PetscErrorCode MatRestoreColumnIJ(8012,319560
+PetscErrorCode MatColoringPatch(8051,320738
+PetscErrorCode MatSetUnfactored(8103,322592
+PetscErrorCode MatCreateSubMatrix(8303,328454
+PetscErrorCode MatPropagateSymmetryOptions(8409,332775
+PetscErrorCode MatStashSetInitialSize(8453,334373
+PetscErrorCode MatInterpolateAdd(8484,335206
+PetscErrorCode MatInterpolate(8521,336133
+PetscErrorCode MatRestrict(8556,336954
+PetscErrorCode MatMatInterpolateAdd(8595,338015
+PetscErrorCode MatMatInterpolate(8672,340790
+PetscErrorCode MatMatRestrict(8700,341542
+PetscErrorCode MatGetNullSpace(8720,342004
+PetscErrorCode MatSetNullSpace(8764,344393
+PetscErrorCode MatGetTransposeNullSpace(8789,345246
+PetscErrorCode MatSetTransposeNullSpace(8817,346188
+PetscErrorCode MatSetNearNullSpace(8847,347308
+PetscErrorCode MatGetNearNullSpace(8875,348099
+PetscErrorCode MatICCFactor(8913,349251
+PetscErrorCode MatDiagonalScaleLocal(8948,350525
+PetscErrorCode MatGetInertia(8995,351983
+PetscErrorCode MatSolves(9026,353015
+PetscErrorCode MatIsSymmetric(9067,354691
+PetscErrorCode MatIsHermitian(9112,356416
+PetscErrorCode MatIsSymmetricKnown(9155,358079
+PetscErrorCode MatIsSPDKnown(9192,359429
+PetscErrorCode MatIsHermitianKnown(9230,360782
+PetscErrorCode MatIsStructurallySymmetric(9266,362068
+PetscErrorCode MatIsStructurallySymmetricKnown(9302,363583
+PetscErrorCode MatStashGetInfo(9336,364619
+PetscErrorCode MatCreateVecs(9366,365726
+PetscErrorCode MatFactorInfoInitialize(9431,368264
+PetscErrorCode MatFactorSetSchurIS(9459,369339
+PetscErrorCode MatFactorCreateSchurComplement(9509,371829
+PetscErrorCode MatFactorGetSchurComplement(9558,373796
+PetscErrorCode MatFactorRestoreSchurComplement(9583,374695
+PetscErrorCode MatFactorSolveSchurComplementTranspose(9615,375719
+PetscErrorCode MatFactorSolveSchurComplement(9659,377207
+PetscErrorCode MatFactorInvertSchurComplement(9701,378605
+PetscErrorCode MatFactorFactorizeSchurComplement(9728,379421
+PetscErrorCode MatPtAP(9766,380744
+PetscErrorCode MatRARt(9821,382927
+static PetscErrorCode MatProduct_Private(9846,384074
+PetscErrorCode MatMatMult(9934,388122
+PetscErrorCode MatMatTransposeMult(9977,389951
+PetscErrorCode MatTransposeMatMult(10016,391428
+PetscErrorCode MatMatMatMult(10056,392866
+PetscErrorCode MatCreateRedundantMatrix(10107,394977
+PetscErrorCode MatGetMultiProcBlock(10243,400884
+PetscErrorCode MatGetLocalSubMatrix(10288,402859
+PetscErrorCode MatRestoreLocalSubMatrix(10321,403975
+PetscErrorCode MatFindZeroDiagonals(10355,404948
+PetscErrorCode MatFindOffBlockDiagonalEntries(10403,406608
+PetscErrorCode MatInvertBlockDiagonal(10437,407730
+PetscErrorCode MatInvertVariableBlockDiagonal(10469,408902
+PetscErrorCode MatInvertBlockDiagonalMat(10495,409844
+PetscErrorCode MatTransposeColoringDestroy(10532,411139
+PetscErrorCode MatTransColoringApplySpToDen(10575,412486
+PetscErrorCode MatTransColoringApplyDenToSp(10608,413628
+PetscErrorCode MatTransposeColoringCreate(10638,414638
+PetscErrorCode MatGetNonzeroState(10683,416433
+PetscErrorCode MatCreateMPIMatConcatenateSeqMat(10713,417244
+PetscErrorCode MatSubdomainsCreateCoalesce(10756,418640
+PetscErrorCode MatGalerkin(10805,420507
+PetscErrorCode MatSetOperation(10878,423036
+PetscErrorCode MatGetOperation(10915,424255
+PetscErrorCode MatHasOperation(10942,424963
+PetscErrorCode MatHasCongruentLayouts(10979,425931
+PetscErrorCode MatSetInf(10999,426679
+PETSC_EXTERN PetscErrorCode MatCreateGraph(11025,427507
src/mat/interface/matreg.c,437
matreg.c:^?matreg.c^A,1
@@ -31485,9 +31485,9 @@
PetscErrorCode MatGetType(193,6223
PetscErrorCode MatGetVecType(217,6735
PetscErrorCode MatSetVecType(242,7330
-PetscErrorCode MatRegister(277,8182
-MatRootName MatRootNameList 285,8414
-PetscErrorCode MatRegisterRootName(310,9639
+PetscErrorCode MatRegister(277,8177
+MatRootName MatRootNameList 285,8409
+PetscErrorCode MatRegisterRootName(310,9634
src/mat/interface/matproduct.c,2052
matproduct.c:^?matproduct.c^A,1
@@ -31499,39 +31499,39 @@
static PetscErrorCode MatProductNumeric_ABC_Unsafe(136,5218
static PetscErrorCode MatProductSymbolic_ABC_Unsafe(149,5565
static PetscErrorCode MatProductSymbolic_Unsafe(179,6742
-PetscErrorCode MatProductReplaceMats(221,8214
-static PetscErrorCode MatProductNumeric_X_Dense(279,10706
-static PetscErrorCode MatProductSymbolic_X_Dense(351,13410
-static PetscErrorCode MatProductSetFromOptions_Private(380,14564
-PetscErrorCode MatProductSetFromOptions(521,21318
-PetscErrorCode MatProductView(548,22598
-PetscErrorCode MatProductNumeric_AB(563,23263
-PetscErrorCode MatProductNumeric_AtB(573,23501
-PetscErrorCode MatProductNumeric_ABt(583,23749
-PetscErrorCode MatProductNumeric_PtAP(593,23997
-PetscErrorCode MatProductNumeric_RARt(603,24234
-PetscErrorCode MatProductNumeric_ABC(613,24471
-PetscErrorCode MatProductNumeric(640,25190
-PetscErrorCode MatProductSymbolic_AB(697,27417
-PetscErrorCode MatProductSymbolic_AtB(708,27723
-PetscErrorCode MatProductSymbolic_ABt(719,28040
-PetscErrorCode MatProductSymbolic_ABC(730,28357
-PetscErrorCode MatProductSymbolic(759,29293
-PetscErrorCode MatProductSetFill(824,31952
-PetscErrorCode MatProductSetAlgorithm(851,32891
-PetscErrorCode MatProductSetType(878,33776
-PetscErrorCode MatProductClear(912,34763
-PetscErrorCode MatProductCreate_Private(933,35422
-PetscErrorCode MatProductCreateWithMat(984,36939
-PetscErrorCode MatProductCreate(1058,39876
- Mat BC;1088,41066
- Mat ABC;1089,41076
-} MatMatMatPrivate;1090,41087
-static PetscErrorCode MatDestroy_MatMatMatPrivate(1092,41108
-static PetscErrorCode MatProductNumeric_ABC_Basic(1103,41386
-PetscErrorCode MatProductSymbolic_ABC_Basic(1125,42377
-PetscErrorCode MatProductGetType(1213,45940
-PetscErrorCode MatProductGetMats(1240,46651
+PetscErrorCode MatProductReplaceMats(221,8221
+static PetscErrorCode MatProductNumeric_X_Dense(279,10713
+static PetscErrorCode MatProductSymbolic_X_Dense(351,13417
+static PetscErrorCode MatProductSetFromOptions_Private(380,14571
+PetscErrorCode MatProductSetFromOptions(521,21332
+PetscErrorCode MatProductView(549,22663
+PetscErrorCode MatProductNumeric_AB(564,23328
+PetscErrorCode MatProductNumeric_AtB(574,23566
+PetscErrorCode MatProductNumeric_ABt(584,23814
+PetscErrorCode MatProductNumeric_PtAP(594,24062
+PetscErrorCode MatProductNumeric_RARt(604,24299
+PetscErrorCode MatProductNumeric_ABC(614,24536
+PetscErrorCode MatProductNumeric(641,25262
+PetscErrorCode MatProductSymbolic_AB(698,27489
+PetscErrorCode MatProductSymbolic_AtB(709,27795
+PetscErrorCode MatProductSymbolic_ABt(720,28112
+PetscErrorCode MatProductSymbolic_ABC(731,28429
+PetscErrorCode MatProductSymbolic(760,29372
+PetscErrorCode MatProductSetFill(825,32038
+PetscErrorCode MatProductSetAlgorithm(852,32984
+PetscErrorCode MatProductSetType(879,33876
+PetscErrorCode MatProductClear(913,34870
+PetscErrorCode MatProductCreate_Private(934,35529
+PetscErrorCode MatProductCreateWithMat(982,37032
+PetscErrorCode MatProductCreate(1056,39976
+ Mat BC;1086,41166
+ Mat ABC;1087,41176
+} MatMatMatPrivate;1088,41187
+static PetscErrorCode MatDestroy_MatMatMatPrivate(1090,41208
+static PetscErrorCode MatProductNumeric_ABC_Basic(1101,41486
+PetscErrorCode MatProductSymbolic_ABC_Basic(1123,42477
+PetscErrorCode MatProductGetType(1211,46047
+PetscErrorCode MatProductGetMats(1238,46765
src/mat/interface/matnull.c,405
matnull.c:^?matnull.c^A,1
@@ -31899,16 +31899,16 @@
static PetscErrorCode MatShellSetOperation_Shell(1510,60811
static PetscErrorCode MatShellGetOperation_Shell(1570,62780
PETSC_EXTERN PetscErrorCode MatCreate_Shell(1620,64159
-PetscErrorCode MatCreateShell(1740,69574
-PetscErrorCode MatShellSetContext(1768,70431
-PetscErrorCode MatShellSetContextDestroy(1795,71280
-PetscErrorCode MatShellSetVecType(1816,71833
-PetscErrorCode MatShellSetManageScalingShifts(1836,72458
-PetscErrorCode MatShellTestMult(1865,73499
-PetscErrorCode MatShellTestMultTranspose(1927,76279
-PetscErrorCode MatShellSetOperation(2021,80443
-PetscErrorCode MatShellGetOperation(2061,81824
-PetscErrorCode MatIsShell(2085,82601
+PetscErrorCode MatCreateShell(1740,69578
+PetscErrorCode MatShellSetContext(1768,70435
+PetscErrorCode MatShellSetContextDestroy(1795,71284
+PetscErrorCode MatShellSetVecType(1816,71837
+PetscErrorCode MatShellSetManageScalingShifts(1836,72462
+PetscErrorCode MatShellTestMult(1865,73503
+PetscErrorCode MatShellTestMultTranspose(1927,76283
+PetscErrorCode MatShellSetOperation(2021,80447
+PetscErrorCode MatShellGetOperation(2061,81828
+PetscErrorCode MatIsShell(2085,82605
src/mat/impls/shell/shellcnv.c,723
shellcnv.c:^?shellcnv.c^A,1
@@ -32017,61 +32017,61 @@
} Mat_SeqSELL;50,3008
static inline PetscErrorCode MatSeqXSELLFreeSELL(55,3080
#define MatSeqXSELLReallocateSELL(67,3420
-#define MatSetValue_SeqSELL_Private(99,5347
+#define MatSetValue_SeqSELL_Private(99,5348
-src/mat/impls/sell/seq/sell.c,2446
+src/mat/impls/sell/seq/sell.c,2447
sell.c:^?sell.c^A,1
static PetscBool cited 9,229
static const char citation[citation10,273
#define _MM_SCALE_8 22,1076
#define AVX512_Mult_Private(30,1280
#define AVX2_Mult_Private(37,1702
-PetscErrorCode MatSeqSELLSetPreallocation(83,3627
-PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(92,3949
-PetscErrorCode MatGetRow_SeqSELL(175,7849
-PetscErrorCode MatRestoreRow_SeqSELL(198,8657
-PetscErrorCode MatConvert_SeqSELL_SeqAIJ(204,8815
-PetscErrorCode MatConvert_SeqAIJ_SeqSELL(244,9976
-PetscErrorCode MatMult_SeqSELL(292,11749
-PetscErrorCode MatMultAdd_SeqSELL(508,20243
-PetscErrorCode MatMultTransposeAdd_SeqSELL(684,27098
-PetscErrorCode MatMultTranspose_SeqSELL(731,28796
-PetscErrorCode MatMissingDiagonal_SeqSELL(746,29143
-PetscErrorCode MatMarkDiagonal_SeqSELL(771,29821
-PetscErrorCode MatInvertDiagonal_SeqSELL(797,30538
-PetscErrorCode MatZeroEntries_SeqSELL(840,31933
-PetscErrorCode MatDestroy_SeqSELL(850,32185
-PetscErrorCode MatSetOption_SeqSELL(882,33582
-PetscErrorCode MatGetDiagonal_SeqSELL(927,34774
-PetscErrorCode MatDiagonalScale_SeqSELL(961,35805
-PetscErrorCode MatGetValues_SeqSELL(1006,37740
-PetscErrorCode MatView_SeqSELL_ASCII(1046,39264
-PetscErrorCode MatView_SeqSELL_Draw_Zoom(1269,51142
-PetscErrorCode MatView_SeqSELL_Draw(1358,54329
-PetscErrorCode MatView_SeqSELL(1385,55086
-PetscErrorCode MatAssemblyEnd_SeqSELL(1401,55703
-PetscErrorCode MatGetInfo_SeqSELL(1454,58425
-PetscErrorCode MatSetValues_SeqSELL(1478,59231
-PetscErrorCode MatCopy_SeqSELL(1551,62207
-PetscErrorCode MatSetUp_SeqSELL(1567,62855
-PetscErrorCode MatSeqSELLGetArray_SeqSELL(1574,63012
-PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(1583,63199
-PetscErrorCode MatRealPart_SeqSELL(1589,63327
-PetscErrorCode MatImaginaryPart_SeqSELL(1600,63598
-PetscErrorCode MatScale_SeqSELL(1612,63925
-PetscErrorCode MatShift_SeqSELL(1627,64401
-PetscErrorCode MatSOR_SeqSELL(1637,64672
-static struct _MatOps MatOps_Values 1740,69008
-PetscErrorCode MatStoreValues_SeqSELL(1892,76533
-PetscErrorCode MatRetrieveValues_SeqSELL(1907,77074
-PetscErrorCode MatSeqSELLRestoreArray(1931,77889
-PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(1938,78092
-PetscErrorCode MatDuplicateNoCreate_SeqSELL(1986,80020
-PetscErrorCode MatDuplicate_SeqSELL(2054,82174
-PetscErrorCode MatCreateSeqSELL(2164,87036
-PetscErrorCode MatEqual_SeqSELL(2174,87401
-PetscErrorCode MatSeqSELLInvalidateDiagonal(2193,88130
-PetscErrorCode MatConjugate_SeqSELL(2202,88309
+PetscErrorCode MatSeqSELLSetPreallocation(84,3693
+PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(93,4015
+PetscErrorCode MatGetRow_SeqSELL(176,7915
+PetscErrorCode MatRestoreRow_SeqSELL(199,8723
+PetscErrorCode MatConvert_SeqSELL_SeqAIJ(205,8881
+PetscErrorCode MatConvert_SeqAIJ_SeqSELL(245,10042
+PetscErrorCode MatMult_SeqSELL(293,11815
+PetscErrorCode MatMultAdd_SeqSELL(509,20308
+PetscErrorCode MatMultTransposeAdd_SeqSELL(685,27162
+PetscErrorCode MatMultTranspose_SeqSELL(732,28860
+PetscErrorCode MatMissingDiagonal_SeqSELL(747,29207
+PetscErrorCode MatMarkDiagonal_SeqSELL(772,29885
+PetscErrorCode MatInvertDiagonal_SeqSELL(798,30602
+PetscErrorCode MatZeroEntries_SeqSELL(841,31997
+PetscErrorCode MatDestroy_SeqSELL(851,32249
+PetscErrorCode MatSetOption_SeqSELL(883,33646
+PetscErrorCode MatGetDiagonal_SeqSELL(928,34838
+PetscErrorCode MatDiagonalScale_SeqSELL(962,35869
+PetscErrorCode MatGetValues_SeqSELL(1007,37804
+PetscErrorCode MatView_SeqSELL_ASCII(1047,39328
+PetscErrorCode MatView_SeqSELL_Draw_Zoom(1270,51206
+PetscErrorCode MatView_SeqSELL_Draw(1359,54393
+PetscErrorCode MatView_SeqSELL(1386,55150
+PetscErrorCode MatAssemblyEnd_SeqSELL(1402,55767
+PetscErrorCode MatGetInfo_SeqSELL(1455,58489
+PetscErrorCode MatSetValues_SeqSELL(1479,59295
+PetscErrorCode MatCopy_SeqSELL(1552,62271
+PetscErrorCode MatSetUp_SeqSELL(1568,62919
+PetscErrorCode MatSeqSELLGetArray_SeqSELL(1575,63076
+PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(1584,63263
+PetscErrorCode MatRealPart_SeqSELL(1590,63391
+PetscErrorCode MatImaginaryPart_SeqSELL(1601,63662
+PetscErrorCode MatScale_SeqSELL(1613,63989
+PetscErrorCode MatShift_SeqSELL(1628,64465
+PetscErrorCode MatSOR_SeqSELL(1638,64736
+static struct _MatOps MatOps_Values 1741,69072
+PetscErrorCode MatStoreValues_SeqSELL(1893,76597
+PetscErrorCode MatRetrieveValues_SeqSELL(1908,77138
+PetscErrorCode MatSeqSELLRestoreArray(1932,77960
+PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(1939,78163
+PetscErrorCode MatDuplicateNoCreate_SeqSELL(1987,80091
+PetscErrorCode MatDuplicate_SeqSELL(2055,82245
+PetscErrorCode MatCreateSeqSELL(2165,87128
+PetscErrorCode MatEqual_SeqSELL(2175,87493
+PetscErrorCode MatSeqSELLInvalidateDiagonal(2194,88222
+PetscErrorCode MatConjugate_SeqSELL(2203,88401
src/mat/impls/sell/seq/makefile,96
makefile:^?makefile^A,1
@@ -32102,6 +32102,59 @@
PETSC_EXTERN void matcreateseqsell_(12,409
PETSC_EXTERN void matseqsellsetpreallocation_(18,682
+src/mat/impls/sell/mpi/mpisell.c,2471
+mpisell.c:^?mpisell.c^A,1
+PetscErrorCode MatDiagonalSet_MPISELL(25,1027
+PetscErrorCode MatCreateColmap_MPISELL_Private(45,1747
+#define MatSetValues_SeqSELL_A_Private(62,2407
+#define MatSetValues_SeqSELL_B_Private(106,3886
+PetscErrorCode MatSetValues_MPISELL(150,5365
+PetscErrorCode MatGetValues_MPISELL(241,9672
+PetscErrorCode MatAssemblyBegin_MPISELL(278,11423
+PetscErrorCode MatAssemblyEnd_MPISELL(292,11978
+PetscErrorCode MatZeroEntries_MPISELL(346,14255
+PetscErrorCode MatMult_MPISELL(356,14467
+PetscErrorCode MatMultDiagonalBlock_MPISELL(371,15112
+PetscErrorCode MatMultAdd_MPISELL(380,15325
+PetscErrorCode MatMultTranspose_MPISELL(392,15768
+PetscErrorCode MatIsTranspose_MPISELL(407,16294
+PetscErrorCode MatMultTransposeAdd_MPISELL(447,17932
+PetscErrorCode MatGetDiagonal_MPISELL(466,18579
+PetscErrorCode MatScale_MPISELL(477,19072
+PetscErrorCode MatDestroy_MPISELL(487,19290
+PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(522,20754
+PetscErrorCode MatView_MPISELL(659,27082
+PetscErrorCode MatGetGhosts_MPISELL(672,27698
+PetscErrorCode MatGetInfo_MPISELL(682,27977
+PetscErrorCode MatSetOption_MPISELL(734,29651
+PetscErrorCode MatDiagonalScale_MPISELL(794,31317
+PetscErrorCode MatSetUnfactored_MPISELL(824,32434
+PetscErrorCode MatEqual_MPISELL(833,32615
+PetscErrorCode MatCopy_MPISELL(851,33095
+PetscErrorCode MatSetUp_MPISELL(872,33997
+PetscErrorCode MatConjugate_MPISELL(881,34225
+PetscErrorCode MatRealPart_MPISELL(893,34505
+PetscErrorCode MatImaginaryPart_MPISELL(903,34708
+PetscErrorCode MatInvertBlockDiagonal_MPISELL(913,34926
+static PetscErrorCode MatSetRandom_MPISELL(923,35201
+PetscErrorCode MatSetFromOptions_MPISELL(935,35559
+PetscErrorCode MatShift_MPISELL(943,35787
+PetscErrorCode MatMissingDiagonal_MPISELL(960,36272
+PetscErrorCode MatGetDiagonalBlock_MPISELL(975,36717
+static struct _MatOps MatOps_Values 983,36937
+PetscErrorCode MatStoreValues_MPISELL(1137,44684
+PetscErrorCode MatRetrieveValues_MPISELL(1147,44909
+PetscErrorCode MatMPISELLSetPreallocation_MPISELL(1157,45143
+PetscErrorCode MatDuplicate_MPISELL(1191,46431
+PetscErrorCode MatMPISELLSetPreallocation(1368,54148
+PetscErrorCode MatCreateSELL(1548,62399
+PetscErrorCode MatMPISELLGetSeqSELL(1566,63052
+PetscErrorCode MatMPISELLGetLocalMatCondensed(1598,64110
+PetscErrorCode MatConvert_MPISELL_MPIAIJ(1650,65849
+PetscErrorCode MatConvert_MPIAIJ_MPISELL(1694,67470
+PetscErrorCode MatSOR_MPISELL(1738,69095
+PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(1818,72179
+
src/mat/impls/sell/mpi/mpisell.h,827
mpisell.h:^?mpisell.h^A,1
#define __MPISELL_H3,21
@@ -32130,59 +32183,6 @@
PetscInt *ld;ld38,1500
} Mat_MPISELL;39,1570
-src/mat/impls/sell/mpi/mpisell.c,2471
-mpisell.c:^?mpisell.c^A,1
-PetscErrorCode MatDiagonalSet_MPISELL(25,1020
-PetscErrorCode MatCreateColmap_MPISELL_Private(45,1739
-#define MatSetValues_SeqSELL_A_Private(62,2399
-#define MatSetValues_SeqSELL_B_Private(106,3878
-PetscErrorCode MatSetValues_MPISELL(150,5357
-PetscErrorCode MatGetValues_MPISELL(241,9664
-PetscErrorCode MatAssemblyBegin_MPISELL(278,11415
-PetscErrorCode MatAssemblyEnd_MPISELL(292,11970
-PetscErrorCode MatZeroEntries_MPISELL(346,14247
-PetscErrorCode MatMult_MPISELL(356,14459
-PetscErrorCode MatMultDiagonalBlock_MPISELL(371,15104
-PetscErrorCode MatMultAdd_MPISELL(380,15317
-PetscErrorCode MatMultTranspose_MPISELL(392,15760
-PetscErrorCode MatIsTranspose_MPISELL(407,16286
-PetscErrorCode MatMultTransposeAdd_MPISELL(447,17924
-PetscErrorCode MatGetDiagonal_MPISELL(466,18571
-PetscErrorCode MatScale_MPISELL(477,19064
-PetscErrorCode MatDestroy_MPISELL(487,19282
-PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(522,20746
-PetscErrorCode MatView_MPISELL(659,27074
-PetscErrorCode MatGetGhosts_MPISELL(672,27690
-PetscErrorCode MatGetInfo_MPISELL(682,27969
-PetscErrorCode MatSetOption_MPISELL(734,29643
-PetscErrorCode MatDiagonalScale_MPISELL(794,31309
-PetscErrorCode MatSetUnfactored_MPISELL(824,32426
-PetscErrorCode MatEqual_MPISELL(833,32607
-PetscErrorCode MatCopy_MPISELL(851,33087
-PetscErrorCode MatSetUp_MPISELL(872,33989
-PetscErrorCode MatConjugate_MPISELL(881,34217
-PetscErrorCode MatRealPart_MPISELL(893,34497
-PetscErrorCode MatImaginaryPart_MPISELL(903,34700
-PetscErrorCode MatInvertBlockDiagonal_MPISELL(913,34918
-static PetscErrorCode MatSetRandom_MPISELL(923,35193
-PetscErrorCode MatSetFromOptions_MPISELL(935,35551
-PetscErrorCode MatShift_MPISELL(943,35779
-PetscErrorCode MatMissingDiagonal_MPISELL(960,36264
-PetscErrorCode MatGetDiagonalBlock_MPISELL(975,36709
-static struct _MatOps MatOps_Values 983,36929
-PetscErrorCode MatStoreValues_MPISELL(1137,44676
-PetscErrorCode MatRetrieveValues_MPISELL(1147,44901
-PetscErrorCode MatMPISELLSetPreallocation_MPISELL(1157,45135
-PetscErrorCode MatDuplicate_MPISELL(1191,46423
-PetscErrorCode MatMPISELLSetPreallocation(1368,54091
-PetscErrorCode MatCreateSELL(1548,62329
-PetscErrorCode MatMPISELLGetSeqSELL(1566,62982
-PetscErrorCode MatMPISELLGetLocalMatCondensed(1597,63992
-PetscErrorCode MatConvert_MPISELL_MPIAIJ(1649,65731
-PetscErrorCode MatConvert_MPIAIJ_MPISELL(1693,67352
-PetscErrorCode MatSOR_MPISELL(1737,68977
-PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(1817,72054
-
src/mat/impls/sell/mpi/mmsell.c,293
mmsell.c:^?mmsell.c^A,1
PetscErrorCode MatDisAssemble_MPISELL(16,565
@@ -32310,43 +32310,58 @@
DIRS 3,34
LOCDIR 4,53
+src/mat/impls/sbaij/seq/sbaijfact.c,809
+sbaijfact.c:^?sbaijfact.c^A,1
+PetscErrorCode MatGetInertia_SeqSBAIJ(7,160
+PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ_MSR(33,1061
+PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(216,6698
+PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ_inplace(384,12944
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(559,19408
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering(734,25132
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(866,29509
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering(1047,35621
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace(1190,40611
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering(1347,45732
+PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace(1498,51185
+PetscErrorCode MatCholeskyFactor_SeqSBAIJ(1637,55873
+
src/mat/impls/sbaij/seq/sbaij2.c,1771
sbaij2.c:^?sbaij2.c^A,1
PetscErrorCode MatIncreaseOverlap_SeqSBAIJ(9,235
PetscErrorCode MatSeqSBAIJZeroOps_Private(89,3356
PetscErrorCode MatCreateSubMatrix_SeqSBAIJ_Private(106,3989
PetscErrorCode MatCreateSubMatrix_SeqSBAIJ(199,7027
-PetscErrorCode MatCreateSubMatrices_SeqSBAIJ(251,9050
-PetscErrorCode MatMult_SeqSBAIJ_2(266,9601
-PetscErrorCode MatMult_SeqSBAIJ_3(320,11311
-PetscErrorCode MatMult_SeqSBAIJ_4(378,13327
-PetscErrorCode MatMult_SeqSBAIJ_5(440,15764
-PetscErrorCode MatMult_SeqSBAIJ_6(506,18717
-PetscErrorCode MatMult_SeqSBAIJ_7(576,22278
-PetscErrorCode MatMult_SeqSBAIJ_N(652,26621
-PetscErrorCode MatMultAdd_SeqSBAIJ_1(725,28490
-PetscErrorCode MatMultAdd_SeqSBAIJ_2(782,30086
-PetscErrorCode MatMultAdd_SeqSBAIJ_3(836,31786
-PetscErrorCode MatMultAdd_SeqSBAIJ_4(895,33793
-PetscErrorCode MatMultAdd_SeqSBAIJ_5(958,36221
-PetscErrorCode MatMultAdd_SeqSBAIJ_6(1025,39165
-PetscErrorCode MatMultAdd_SeqSBAIJ_7(1096,42717
-PetscErrorCode MatMultAdd_SeqSBAIJ_N(1171,46973
-PetscErrorCode MatScale_SeqSBAIJ(1244,48828
-PetscErrorCode MatNorm_SeqSBAIJ(1257,49229
-PetscErrorCode MatEqual_SeqSBAIJ(1355,52343
-PetscErrorCode MatGetDiagonal_SeqSBAIJ(1379,53154
-PetscErrorCode MatDiagonalScale_SeqSBAIJ(1422,54366
-PetscErrorCode MatGetInfo_SeqSBAIJ(1466,55685
-PetscErrorCode MatZeroEntries_SeqSBAIJ(1490,56548
-PetscErrorCode MatGetRowMaxAbs_SeqSBAIJ(1499,56751
-PetscErrorCode MatMatMultSymbolic_SeqSBAIJ_SeqDense(1545,58171
-PetscErrorCode MatMatMult_SeqSBAIJ_1_Private(1553,58442
-PetscErrorCode MatMatMult_SeqSBAIJ_2_Private(1592,59635
-PetscErrorCode MatMatMult_SeqSBAIJ_3_Private(1631,60950
-PetscErrorCode MatMatMult_SeqSBAIJ_4_Private(1673,62572
-PetscErrorCode MatMatMult_SeqSBAIJ_5_Private(1718,64604
-PetscErrorCode MatMatMultNumeric_SeqSBAIJ_SeqDense(1766,67133
+PetscErrorCode MatCreateSubMatrices_SeqSBAIJ(251,9051
+PetscErrorCode MatMult_SeqSBAIJ_2(266,9602
+PetscErrorCode MatMult_SeqSBAIJ_3(320,11312
+PetscErrorCode MatMult_SeqSBAIJ_4(378,13328
+PetscErrorCode MatMult_SeqSBAIJ_5(440,15765
+PetscErrorCode MatMult_SeqSBAIJ_6(506,18718
+PetscErrorCode MatMult_SeqSBAIJ_7(576,22279
+PetscErrorCode MatMult_SeqSBAIJ_N(652,26622
+PetscErrorCode MatMultAdd_SeqSBAIJ_1(725,28491
+PetscErrorCode MatMultAdd_SeqSBAIJ_2(782,30087
+PetscErrorCode MatMultAdd_SeqSBAIJ_3(836,31787
+PetscErrorCode MatMultAdd_SeqSBAIJ_4(895,33794
+PetscErrorCode MatMultAdd_SeqSBAIJ_5(958,36222
+PetscErrorCode MatMultAdd_SeqSBAIJ_6(1025,39166
+PetscErrorCode MatMultAdd_SeqSBAIJ_7(1096,42718
+PetscErrorCode MatMultAdd_SeqSBAIJ_N(1171,46974
+PetscErrorCode MatScale_SeqSBAIJ(1244,48829
+PetscErrorCode MatNorm_SeqSBAIJ(1257,49230
+PetscErrorCode MatEqual_SeqSBAIJ(1355,52344
+PetscErrorCode MatGetDiagonal_SeqSBAIJ(1379,53155
+PetscErrorCode MatDiagonalScale_SeqSBAIJ(1422,54367
+PetscErrorCode MatGetInfo_SeqSBAIJ(1466,55686
+PetscErrorCode MatZeroEntries_SeqSBAIJ(1490,56549
+PetscErrorCode MatGetRowMaxAbs_SeqSBAIJ(1499,56752
+PetscErrorCode MatMatMultSymbolic_SeqSBAIJ_SeqDense(1545,58172
+PetscErrorCode MatMatMult_SeqSBAIJ_1_Private(1553,58443
+PetscErrorCode MatMatMult_SeqSBAIJ_2_Private(1592,59636
+PetscErrorCode MatMatMult_SeqSBAIJ_3_Private(1631,60951
+PetscErrorCode MatMatMult_SeqSBAIJ_4_Private(1673,62573
+PetscErrorCode MatMatMult_SeqSBAIJ_5_Private(1718,64605
+PetscErrorCode MatMatMultNumeric_SeqSBAIJ_SeqDense(1766,67134
src/mat/impls/sbaij/seq/sbaij.c,3189
sbaij.c:^?sbaij.c^A,1
@@ -32528,21 +32543,6 @@
sbaijfact10.c:^?sbaijfact10.c^A,1
PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering(8,165
-src/mat/impls/sbaij/seq/sbaijfact.c,809
-sbaijfact.c:^?sbaijfact.c^A,1
-PetscErrorCode MatGetInertia_SeqSBAIJ(7,160
-PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ_MSR(33,1061
-PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(216,6698
-PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ_inplace(384,12944
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(559,19408
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering(734,25132
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(866,29509
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering(1047,35621
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace(1190,40611
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering(1347,45732
-PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace(1498,51185
-PetscErrorCode MatCholeskyFactor_SeqSBAIJ(1637,55873
-
src/mat/impls/sbaij/seq/sbaij.h,581
sbaij.h:^?sbaij.h^A,1
#define __SBAIJ_H3,19
@@ -32735,16 +32735,16 @@
PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(1914,72774
PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(1984,75640
PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(2080,79728
-PetscErrorCode MatMPISBAIJSetPreallocation(2278,88140
-PetscErrorCode MatCreateSBAIJ(2390,93785
-static PetscErrorCode MatDuplicate_MPISBAIJ(2408,94434
-#define MatLoad_MPISBAIJ_Binary 2501,97938
-PetscErrorCode MatLoad_MPISBAIJ(2503,97994
-PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(2514,98472
-PetscErrorCode MatSOR_MPISBAIJ(2597,101040
-PetscErrorCode MatCreateMPISBAIJWithArrays(2761,108237
-PetscErrorCode MatMPISBAIJSetPreallocationCSR(2795,109736
-PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(2802,110067
+PetscErrorCode MatMPISBAIJSetPreallocation(2278,88146
+PetscErrorCode MatCreateSBAIJ(2390,93784
+static PetscErrorCode MatDuplicate_MPISBAIJ(2408,94433
+#define MatLoad_MPISBAIJ_Binary 2501,97937
+PetscErrorCode MatLoad_MPISBAIJ(2503,97993
+PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(2514,98471
+PetscErrorCode MatSOR_MPISBAIJ(2597,101039
+PetscErrorCode MatCreateMPISBAIJWithArrays(2761,108236
+PetscErrorCode MatMPISBAIJSetPreallocationCSR(2795,109735
+PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(2802,110066
src/mat/impls/sbaij/mpi/mpiaijsbaij.c,128
mpiaijsbaij.c:^?mpiaijsbaij.c^A,1
@@ -33060,41 +33060,41 @@
PetscErrorCode MatMFFDFinalizePackage(20,567
PetscErrorCode MatMFFDInitializePackage(37,1011
static PetscErrorCode MatMFFDSetType_MFFD(69,2048
-PetscErrorCode MatMFFDSetType(115,3586
-typedef PetscErrorCode (*FCN1)FCN1126,3912
-static PetscErrorCode MatMFFDSetFunctioniBase_MFFD(127,4013
-typedef PetscErrorCode (*FCN2)FCN2137,4225
-static PetscErrorCode MatMFFDSetFunctioni_MFFD(138,4351
-static PetscErrorCode MatMFFDGetH_MFFD(149,4651
-static PetscErrorCode MatMFFDResetHHistory_MFFD(159,4850
-PetscErrorCode MatMFFDRegister(195,5686
-static PetscErrorCode MatDestroy_MFFD(204,6024
-static PetscErrorCode MatView_MFFD(236,7624
-PETSC_EXTERN PetscErrorCode MatAssemblyEnd_MFFD(285,9825
-static PetscErrorCode MatMult_MFFD(303,10291
-PetscErrorCode MatGetDiagonal_MFFD(385,13249
-PETSC_EXTERN PetscErrorCode MatMFFDSetBase_MFFD(426,14699
-typedef PetscErrorCode (*FCN3)FCN3453,15577
-static PetscErrorCode MatMFFDSetCheckh_MFFD(455,15699
-PetscErrorCode MatMFFDSetOptionsPrefix(484,16430
-static PetscErrorCode MatSetFromOptions_MFFD(496,16790
-static PetscErrorCode MatMFFDSetPeriod_MFFD(523,18192
-static PetscErrorCode MatMFFDSetFunction_MFFD(533,18408
-static PetscErrorCode MatMFFDSetFunctionError_MFFD(544,18682
-PetscErrorCode MatMFFDSetHHistory_MFFD(554,18926
-PETSC_EXTERN PetscErrorCode MatCreate_MFFD(578,19718
-PetscErrorCode MatCreateMFFD(695,25408
-PetscErrorCode MatMFFDGetH(721,26086
-PetscErrorCode MatMFFDSetFunction(758,27297
-PetscErrorCode MatMFFDSetFunctioni(786,28341
-PetscErrorCode MatMFFDSetFunctioniBase(814,29389
-PetscErrorCode MatMFFDSetPeriod(839,30163
-PetscErrorCode MatMFFDSetFunctionError(873,31315
-PetscErrorCode MatMFFDSetHHistory(903,32307
-PetscErrorCode MatMFFDResetHHistory(930,33145
-PetscErrorCode MatMFFDSetBase(959,33957
-PetscErrorCode MatMFFDSetCheckh(994,34989
-PetscErrorCode MatMFFDCheckPositivity(1025,35944
+PetscErrorCode MatMFFDSetType(115,3587
+typedef PetscErrorCode (*FCN1)FCN1126,3913
+static PetscErrorCode MatMFFDSetFunctioniBase_MFFD(127,4014
+typedef PetscErrorCode (*FCN2)FCN2137,4226
+static PetscErrorCode MatMFFDSetFunctioni_MFFD(138,4352
+static PetscErrorCode MatMFFDGetH_MFFD(149,4652
+static PetscErrorCode MatMFFDResetHHistory_MFFD(159,4851
+PetscErrorCode MatMFFDRegister(195,5687
+static PetscErrorCode MatDestroy_MFFD(204,6025
+static PetscErrorCode MatView_MFFD(236,7625
+PETSC_EXTERN PetscErrorCode MatAssemblyEnd_MFFD(285,9826
+static PetscErrorCode MatMult_MFFD(303,10292
+PetscErrorCode MatGetDiagonal_MFFD(385,13250
+PETSC_EXTERN PetscErrorCode MatMFFDSetBase_MFFD(426,14700
+typedef PetscErrorCode (*FCN3)FCN3453,15578
+static PetscErrorCode MatMFFDSetCheckh_MFFD(455,15700
+PetscErrorCode MatMFFDSetOptionsPrefix(484,16431
+static PetscErrorCode MatSetFromOptions_MFFD(496,16791
+static PetscErrorCode MatMFFDSetPeriod_MFFD(523,18193
+static PetscErrorCode MatMFFDSetFunction_MFFD(533,18409
+static PetscErrorCode MatMFFDSetFunctionError_MFFD(544,18683
+PetscErrorCode MatMFFDSetHHistory_MFFD(554,18927
+PETSC_EXTERN PetscErrorCode MatCreate_MFFD(578,19719
+PetscErrorCode MatCreateMFFD(695,25409
+PetscErrorCode MatMFFDGetH(721,26087
+PetscErrorCode MatMFFDSetFunction(758,27298
+PetscErrorCode MatMFFDSetFunctioni(786,28342
+PetscErrorCode MatMFFDSetFunctioniBase(814,29390
+PetscErrorCode MatMFFDSetPeriod(839,30164
+PetscErrorCode MatMFFDSetFunctionError(873,31316
+PetscErrorCode MatMFFDSetHHistory(903,32308
+PetscErrorCode MatMFFDResetHHistory(930,33146
+PetscErrorCode MatMFFDSetBase(959,33958
+PetscErrorCode MatMFFDSetCheckh(994,34990
+PetscErrorCode MatMFFDCheckPositivity(1025,35945
src/mat/impls/mffd/wp.c,446
wp.c:^?wp.c^A,1
@@ -33430,79 +33430,79 @@
static PetscErrorCode MatMPIXAIJComputeLocalToGlobalMapping_Private(393,14298
PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(604,24619
PETSC_INTERN PetscErrorCode MatConvert_Nest_IS(810,32866
-static PetscErrorCode MatDiagonalScale_IS(1137,46520
-static PetscErrorCode MatGetInfo_IS(1175,47593
-static PetscErrorCode MatTranspose_IS(1232,49381
-static PetscErrorCode MatDiagonalSet_IS(1265,50637
-static PetscErrorCode MatShift_IS(1279,51124
-static PetscErrorCode MatSetValuesLocal_SubMat_IS(1289,51352
-static PetscErrorCode MatSetValuesBlockedLocal_SubMat_IS(1301,52128
-static PetscErrorCode MatCreateSubMatrix_IS(1313,52934
-static PetscErrorCode MatCopy_IS(1460,60397
-static PetscErrorCode MatMissingDiagonal_IS(1474,60862
-static PetscErrorCode MatISSetUpSF_IS(1502,61584
-PetscErrorCode MatISStoreL2L(1544,63343
-static PetscErrorCode MatISStoreL2L_IS(1554,63638
-PetscErrorCode MatISFixLocalEmpty(1580,64327
-static PetscErrorCode MatISFixLocalEmpty_IS(1590,64626
-PetscErrorCode MatISSetPreallocation(1633,66532
-PETSC_EXTERN PetscErrorCode MatISSetPreallocation_IS(1643,66947
-PETSC_EXTERN PetscErrorCode MatISSetMPIXAIJPreallocation_Private(1688,68818
-PETSC_INTERN PetscErrorCode MatConvert_IS_XAIJ(1846,75803
-PetscErrorCode MatISGetMPIXAIJ(2069,86568
-static PetscErrorCode MatDuplicate_IS(2084,87180
-static PetscErrorCode MatIsHermitian_IS(2111,88334
-static PetscErrorCode MatIsSymmetric_IS(2122,88687
-static PetscErrorCode MatIsStructurallySymmetric_IS(2137,89140
-static PetscErrorCode MatDestroy_IS(2152,89597
-static PetscErrorCode MatMult_IS(2201,92310
-static PetscErrorCode MatMultAdd_IS(2221,93023
-static PetscErrorCode MatMultTranspose_IS(2239,93493
-static PetscErrorCode MatMultTransposeAdd_IS(2258,94189
-static PetscErrorCode MatView_IS(2276,94687
-static PetscErrorCode MatInvertBlockDiagonal_IS(2298,95421
-static PetscErrorCode MatISSetUpScatters_Private(2319,96234
-static PetscErrorCode MatISFilterL2GMap(2385,99340
-static PetscErrorCode MatSetLocalToGlobalMapping_IS(2439,101495
-static PetscErrorCode MatSetUp_IS(2556,106757
-static PetscErrorCode MatSetValues_IS(2566,107023
-static PetscErrorCode MatSetValuesBlocked_IS(2582,107767
-static PetscErrorCode MatSetValuesLocal_IS(2598,108537
-static PetscErrorCode MatSetValuesBlockedLocal_IS(2611,108997
-static PetscErrorCode MatISZeroRowsColumnsLocal_Private(2624,109478
-static PetscErrorCode MatZeroRowsColumns_Private_IS(2652,110400
-static PetscErrorCode MatZeroRows_IS(2699,112742
-static PetscErrorCode MatZeroRowsColumns_IS(2706,112987
-static PetscErrorCode MatAssemblyBegin_IS(2713,113238
-static PetscErrorCode MatAssemblyEnd_IS(2722,113441
-static PetscErrorCode MatISGetLocalMat_IS(2806,117157
-static PetscErrorCode MatISRestoreLocalMat_IS(2815,117328
-PetscErrorCode MatISGetLocalMat(2842,117982
-PetscErrorCode MatISRestoreLocalMat(2864,118486
-static PetscErrorCode MatISSetLocalMatType_IS(2873,118753
-PetscErrorCode MatISSetLocalMatType(2895,119281
-static PetscErrorCode MatISSetLocalMat_IS(2903,119522
-PetscErrorCode MatISSetLocalMat(2947,121038
-static PetscErrorCode MatZeroEntries_IS(2956,121314
-static PetscErrorCode MatScale_IS(2965,121483
-static PetscErrorCode MatGetDiagonal_IS(2974,121660
-static PetscErrorCode MatSetOption_IS(2989,122119
-static PetscErrorCode MatAXPY_IS(2998,122322
-static PetscErrorCode MatGetLocalSubMatrix_IS(3014,122833
-static PetscErrorCode MatSetFromOptions_IS(3093,126582
-PetscErrorCode MatCreateIS(3135,128505
-static PetscErrorCode MatHasOperation_IS(3146,128945
-static PetscErrorCode MatSetValuesCOO_IS(3161,129546
-static PetscErrorCode MatSetPreallocationCOOLocal_IS(3172,129874
-static PetscErrorCode MatSetPreallocationCOO_IS(3188,130540
-static PetscErrorCode MatISGetAssembled_Private(3203,131440
-static PetscErrorCode MatISRestoreAssembled_Private(3242,133109
-static PetscErrorCode MatGetDiagonalBlock_IS(3250,133273
-static PetscErrorCode MatCreateSubMatrices_IS(3276,134171
-static PetscErrorCode MatIncreaseOverlap_IS(3310,135153
-PetscErrorCode MatISGetLocalToGlobalMapping(3340,135910
-static PetscErrorCode MatISGetLocalToGlobalMapping_IS(3351,136388
-PETSC_EXTERN PetscErrorCode MatCreate_IS(3383,137746
+static PetscErrorCode MatDiagonalScale_IS(1137,46521
+static PetscErrorCode MatGetInfo_IS(1175,47594
+static PetscErrorCode MatTranspose_IS(1232,49382
+static PetscErrorCode MatDiagonalSet_IS(1265,50638
+static PetscErrorCode MatShift_IS(1279,51125
+static PetscErrorCode MatSetValuesLocal_SubMat_IS(1289,51353
+static PetscErrorCode MatSetValuesBlockedLocal_SubMat_IS(1301,52129
+static PetscErrorCode MatCreateSubMatrix_IS(1313,52935
+static PetscErrorCode MatCopy_IS(1460,60398
+static PetscErrorCode MatMissingDiagonal_IS(1474,60863
+static PetscErrorCode MatISSetUpSF_IS(1502,61585
+PetscErrorCode MatISStoreL2L(1544,63344
+static PetscErrorCode MatISStoreL2L_IS(1554,63639
+PetscErrorCode MatISFixLocalEmpty(1580,64328
+static PetscErrorCode MatISFixLocalEmpty_IS(1590,64627
+PetscErrorCode MatISSetPreallocation(1633,66533
+PETSC_EXTERN PetscErrorCode MatISSetPreallocation_IS(1643,66948
+PETSC_EXTERN PetscErrorCode MatISSetMPIXAIJPreallocation_Private(1688,68819
+PETSC_INTERN PetscErrorCode MatConvert_IS_XAIJ(1846,75804
+PetscErrorCode MatISGetMPIXAIJ(2069,86569
+static PetscErrorCode MatDuplicate_IS(2084,87181
+static PetscErrorCode MatIsHermitian_IS(2111,88335
+static PetscErrorCode MatIsSymmetric_IS(2122,88688
+static PetscErrorCode MatIsStructurallySymmetric_IS(2137,89141
+static PetscErrorCode MatDestroy_IS(2152,89598
+static PetscErrorCode MatMult_IS(2201,92311
+static PetscErrorCode MatMultAdd_IS(2221,93024
+static PetscErrorCode MatMultTranspose_IS(2239,93494
+static PetscErrorCode MatMultTransposeAdd_IS(2258,94190
+static PetscErrorCode MatView_IS(2276,94688
+static PetscErrorCode MatInvertBlockDiagonal_IS(2298,95422
+static PetscErrorCode MatISSetUpScatters_Private(2319,96235
+static PetscErrorCode MatISFilterL2GMap(2385,99341
+static PetscErrorCode MatSetLocalToGlobalMapping_IS(2439,101496
+static PetscErrorCode MatSetUp_IS(2556,106758
+static PetscErrorCode MatSetValues_IS(2566,107024
+static PetscErrorCode MatSetValuesBlocked_IS(2582,107768
+static PetscErrorCode MatSetValuesLocal_IS(2598,108538
+static PetscErrorCode MatSetValuesBlockedLocal_IS(2611,108998
+static PetscErrorCode MatISZeroRowsColumnsLocal_Private(2624,109479
+static PetscErrorCode MatZeroRowsColumns_Private_IS(2652,110401
+static PetscErrorCode MatZeroRows_IS(2699,112743
+static PetscErrorCode MatZeroRowsColumns_IS(2706,112988
+static PetscErrorCode MatAssemblyBegin_IS(2713,113239
+static PetscErrorCode MatAssemblyEnd_IS(2722,113442
+static PetscErrorCode MatISGetLocalMat_IS(2806,117158
+static PetscErrorCode MatISRestoreLocalMat_IS(2815,117329
+PetscErrorCode MatISGetLocalMat(2842,117983
+PetscErrorCode MatISRestoreLocalMat(2864,118487
+static PetscErrorCode MatISSetLocalMatType_IS(2873,118754
+PetscErrorCode MatISSetLocalMatType(2895,119282
+static PetscErrorCode MatISSetLocalMat_IS(2903,119523
+PetscErrorCode MatISSetLocalMat(2947,121039
+static PetscErrorCode MatZeroEntries_IS(2956,121315
+static PetscErrorCode MatScale_IS(2965,121484
+static PetscErrorCode MatGetDiagonal_IS(2974,121661
+static PetscErrorCode MatSetOption_IS(2989,122120
+static PetscErrorCode MatAXPY_IS(2998,122323
+static PetscErrorCode MatGetLocalSubMatrix_IS(3014,122834
+static PetscErrorCode MatSetFromOptions_IS(3093,126583
+PetscErrorCode MatCreateIS(3135,128506
+static PetscErrorCode MatHasOperation_IS(3146,128946
+static PetscErrorCode MatSetValuesCOO_IS(3161,129547
+static PetscErrorCode MatSetPreallocationCOOLocal_IS(3172,129875
+static PetscErrorCode MatSetPreallocationCOO_IS(3188,130541
+static PetscErrorCode MatISGetAssembled_Private(3203,131441
+static PetscErrorCode MatISRestoreAssembled_Private(3242,133110
+static PetscErrorCode MatGetDiagonalBlock_IS(3250,133274
+static PetscErrorCode MatCreateSubMatrices_IS(3276,134172
+static PetscErrorCode MatIncreaseOverlap_IS(3310,135154
+PetscErrorCode MatISGetLocalToGlobalMapping(3340,135911
+static PetscErrorCode MatISGetLocalToGlobalMapping_IS(3351,136389
+PETSC_EXTERN PetscErrorCode MatCreate_IS(3383,137747
src/mat/impls/is/makefile,96
makefile:^?makefile^A,1
@@ -33522,65 +33522,65 @@
static PetscErrorCode MatHYPRE_IJMatrixCopy(124,4796
static PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(166,6387
static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(203,7849
-static PetscErrorCode MatConvert_HYPRE_IS(272,10636
-PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(383,15275
-static PetscErrorCode MatConvert_HYPRE_AIJ(416,16692
-static PetscErrorCode MatAIJGetParCSR_Private(647,26148
-static PetscErrorCode MatAIJRestoreParCSR_Private(784,31161
-static PetscErrorCode MatHYPRE_ParCSR_RAP(831,32736
-static PetscErrorCode MatPtAPNumeric_AIJ_AIJ_wHYPRE(861,33935
-PETSC_INTERN PetscErrorCode MatPtAPSymbolic_AIJ_AIJ_wHYPRE(881,34557
-static PetscErrorCode MatPtAPNumeric_AIJ_HYPRE(890,34851
-static PetscErrorCode MatPtAPNumeric_HYPRE_HYPRE(917,35968
-static PetscErrorCode MatHYPRE_ParCSR_MatMatMult(948,37626
-static PetscErrorCode MatMatMultNumeric_AIJ_AIJ_wHYPRE(963,38079
-PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(983,38701
-static PetscErrorCode MatMatMultNumeric_HYPRE_HYPRE(992,38999
-PETSC_INTERN PetscErrorCode MatTransposeMatMatMultNumeric_AIJ_AIJ_AIJ_wHYPRE(1027,40764
-PETSC_INTERN PetscErrorCode MatTransposeMatMatMultSymbolic_AIJ_AIJ_AIJ_wHYPRE(1045,41446
-static PetscErrorCode MatProductSymbolic_AB_HYPRE(1053,41716
-static PetscErrorCode MatProductSetFromOptions_HYPRE_AB(1060,41875
-static PetscErrorCode MatProductSymbolic_PtAP_HYPRE(1076,42367
-static PetscErrorCode MatProductSetFromOptions_HYPRE_PtAP(1083,42530
-static PetscErrorCode MatProductSetFromOptions_HYPRE(1124,44290
-static PetscErrorCode MatMultTranspose_HYPRE(1144,44734
-static PetscErrorCode MatMult_HYPRE(1151,44926
-static PetscErrorCode MatMultAdd_HYPRE(1158,45110
-static PetscErrorCode MatMultTransposeAdd_HYPRE(1166,45344
-static PetscErrorCode MatHYPRE_MultKernel_Private(1175,45660
-static PetscErrorCode MatDestroy_HYPRE(1206,46965
-static PetscErrorCode MatSetUp_HYPRE(1241,48606
-static PetscErrorCode MatBindToCPU_HYPRE(1250,48867
-static PetscErrorCode MatAssemblyEnd_HYPRE(1268,49540
-static PetscErrorCode MatGetArray_HYPRE(1337,52272
-static PetscErrorCode MatRestoreArray_HYPRE(1357,52767
-static PetscErrorCode MatSetValues_HYPRE(1367,52980
-static PetscErrorCode MatHYPRESetPreallocation_HYPRE(1437,55629
-PetscErrorCode MatHYPRESetPreallocation(1540,60485
-PETSC_EXTERN PetscErrorCode MatCreateFromParCSR(1566,61267
-static PetscErrorCode MatHYPREGetParCSR_HYPRE(1688,65971
-PetscErrorCode MatHYPREGetParCSR(1716,66805
-static PetscErrorCode MatMissingDiagonal_HYPRE(1725,67085
-static PetscErrorCode MatScale_HYPRE(1771,68555
-static PetscErrorCode MatZeroRowsColumns_HYPRE(1812,69577
-static PetscErrorCode MatZeroEntries_HYPRE_CSRMatrix(1832,70387
-PetscErrorCode MatZeroEntries_HYPRE(1848,70742
-static PetscErrorCode MatZeroRows_HYPRE_CSRMatrix(1865,71275
-static PetscErrorCode MatZeroRows_HYPRE(1891,71881
-static PetscErrorCode MatAssemblyBegin_HYPRE(1913,72780
-static PetscErrorCode MatGetRow_HYPRE(1922,73042
-static PetscErrorCode MatRestoreRow_HYPRE(1936,73509
-static PetscErrorCode MatGetValues_HYPRE(1950,73988
-static PetscErrorCode MatSetOption_HYPRE(1969,74629
-static PetscErrorCode MatView_HYPRE(1987,75024
-static PetscErrorCode MatDuplicate_HYPRE(2026,76728
-static PetscErrorCode MatCopy_HYPRE(2043,77242
-static PetscErrorCode MatGetDiagonal_HYPRE(2061,77932
-static PetscErrorCode MatAXPY_HYPRE(2094,79194
-static PetscErrorCode MatSetPreallocationCOO_HYPRE(2169,81663
-static PetscErrorCode MatSetValuesCOO_HYPRE(2261,86194
-PETSC_EXTERN PetscErrorCode MatCreate_HYPRE(2304,87683
-static PetscErrorCode hypre_array_destroy(2376,91089
+static PetscErrorCode MatConvert_HYPRE_IS(272,10635
+PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(383,15274
+static PetscErrorCode MatConvert_HYPRE_AIJ(416,16691
+static PetscErrorCode MatAIJGetParCSR_Private(647,26147
+static PetscErrorCode MatAIJRestoreParCSR_Private(784,31160
+static PetscErrorCode MatHYPRE_ParCSR_RAP(831,32735
+static PetscErrorCode MatPtAPNumeric_AIJ_AIJ_wHYPRE(861,33934
+PETSC_INTERN PetscErrorCode MatPtAPSymbolic_AIJ_AIJ_wHYPRE(881,34556
+static PetscErrorCode MatPtAPNumeric_AIJ_HYPRE(890,34850
+static PetscErrorCode MatPtAPNumeric_HYPRE_HYPRE(917,35967
+static PetscErrorCode MatHYPRE_ParCSR_MatMatMult(948,37625
+static PetscErrorCode MatMatMultNumeric_AIJ_AIJ_wHYPRE(963,38078
+PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(983,38700
+static PetscErrorCode MatMatMultNumeric_HYPRE_HYPRE(992,38998
+PETSC_INTERN PetscErrorCode MatTransposeMatMatMultNumeric_AIJ_AIJ_AIJ_wHYPRE(1027,40763
+PETSC_INTERN PetscErrorCode MatTransposeMatMatMultSymbolic_AIJ_AIJ_AIJ_wHYPRE(1045,41445
+static PetscErrorCode MatProductSymbolic_AB_HYPRE(1053,41715
+static PetscErrorCode MatProductSetFromOptions_HYPRE_AB(1060,41874
+static PetscErrorCode MatProductSymbolic_PtAP_HYPRE(1076,42366
+static PetscErrorCode MatProductSetFromOptions_HYPRE_PtAP(1083,42529
+static PetscErrorCode MatProductSetFromOptions_HYPRE(1124,44289
+static PetscErrorCode MatMultTranspose_HYPRE(1144,44733
+static PetscErrorCode MatMult_HYPRE(1151,44925
+static PetscErrorCode MatMultAdd_HYPRE(1158,45109
+static PetscErrorCode MatMultTransposeAdd_HYPRE(1166,45343
+static PetscErrorCode MatHYPRE_MultKernel_Private(1175,45659
+static PetscErrorCode MatDestroy_HYPRE(1206,46964
+static PetscErrorCode MatSetUp_HYPRE(1241,48605
+static PetscErrorCode MatBindToCPU_HYPRE(1250,48866
+static PetscErrorCode MatAssemblyEnd_HYPRE(1268,49539
+static PetscErrorCode MatGetArray_HYPRE(1337,52271
+static PetscErrorCode MatRestoreArray_HYPRE(1357,52766
+static PetscErrorCode MatSetValues_HYPRE(1367,52979
+static PetscErrorCode MatHYPRESetPreallocation_HYPRE(1437,55628
+PetscErrorCode MatHYPRESetPreallocation(1540,60484
+PETSC_EXTERN PetscErrorCode MatCreateFromParCSR(1566,61266
+static PetscErrorCode MatHYPREGetParCSR_HYPRE(1688,65970
+PetscErrorCode MatHYPREGetParCSR(1716,66804
+static PetscErrorCode MatMissingDiagonal_HYPRE(1725,67084
+static PetscErrorCode MatScale_HYPRE(1771,68554
+static PetscErrorCode MatZeroRowsColumns_HYPRE(1812,69576
+static PetscErrorCode MatZeroEntries_HYPRE_CSRMatrix(1832,70386
+PetscErrorCode MatZeroEntries_HYPRE(1848,70741
+static PetscErrorCode MatZeroRows_HYPRE_CSRMatrix(1865,71274
+static PetscErrorCode MatZeroRows_HYPRE(1891,71880
+static PetscErrorCode MatAssemblyBegin_HYPRE(1913,72779
+static PetscErrorCode MatGetRow_HYPRE(1922,73041
+static PetscErrorCode MatRestoreRow_HYPRE(1936,73508
+static PetscErrorCode MatGetValues_HYPRE(1950,73987
+static PetscErrorCode MatSetOption_HYPRE(1969,74628
+static PetscErrorCode MatView_HYPRE(1987,75023
+static PetscErrorCode MatDuplicate_HYPRE(2026,76727
+static PetscErrorCode MatCopy_HYPRE(2043,77241
+static PetscErrorCode MatGetDiagonal_HYPRE(2061,77931
+static PetscErrorCode MatAXPY_HYPRE(2094,79193
+static PetscErrorCode MatSetPreallocationCOO_HYPRE(2169,81662
+static PetscErrorCode MatSetValuesCOO_HYPRE(2261,86193
+PETSC_EXTERN PetscErrorCode MatCreate_HYPRE(2304,87682
+static PetscErrorCode hypre_array_destroy(2376,91088
src/mat/impls/hypre/mhypre.h,568
mhypre.h:^?mhypre.h^A,1
@@ -33849,23 +33849,23 @@
PetscScalar *finarray, *foutarray,foutarray26,637
PetscScalar *finarray, *foutarray, *binarray,binarray26,637
PetscScalar *finarray, *foutarray, *binarray, *boutarray;boutarray26,637
-} Mat_FFTW;28,867
-PetscErrorCode MatMult_SeqFFTW(49,1519
-PetscErrorCode MatMultTranspose_SeqFFTW(151,5438
-PetscErrorCode MatMult_MPIFFTW(232,8596
-PetscErrorCode MatMultTranspose_MPIFFTW(302,11623
-PetscErrorCode MatDestroy_FFTW(362,14288
-PetscErrorCode VecDestroy_MPIFFTW(384,15083
-static PetscErrorCode VecDuplicate_FFTW_fin(398,15384
-static PetscErrorCode VecDuplicate_FFTW_fout(408,15656
-static PetscErrorCode VecDuplicate_FFTW_bout(418,15933
-PetscErrorCode MatCreateVecsFFTW(466,17685
-PetscErrorCode MatCreateVecsFFTW_FFTW(473,17888
-PetscErrorCode VecScatterPetscToFFTW(733,31065
-PetscErrorCode VecScatterPetscToFFTW_FFTW(740,31252
-PetscErrorCode VecScatterFFTWToPetsc(967,40309
-PetscErrorCode VecScatterFFTWToPetsc_FFTW(974,40496
-PETSC_EXTERN PetscErrorCode MatCreate_FFTW(1181,48801
+} Mat_FFTW;28,868
+PetscErrorCode MatMult_SeqFFTW(49,1520
+PetscErrorCode MatMultTranspose_SeqFFTW(151,5439
+PetscErrorCode MatMult_MPIFFTW(232,8597
+PetscErrorCode MatMultTranspose_MPIFFTW(302,11624
+PetscErrorCode MatDestroy_FFTW(362,14289
+PetscErrorCode VecDestroy_MPIFFTW(384,15084
+static PetscErrorCode VecDuplicate_FFTW_fin(398,15385
+static PetscErrorCode VecDuplicate_FFTW_fout(408,15657
+static PetscErrorCode VecDuplicate_FFTW_bout(418,15934
+PetscErrorCode MatCreateVecsFFTW(466,17686
+PetscErrorCode MatCreateVecsFFTW_FFTW(473,17889
+PetscErrorCode VecScatterPetscToFFTW(733,31067
+PetscErrorCode VecScatterPetscToFFTW_FFTW(740,31254
+PetscErrorCode VecScatterFFTWToPetsc(967,40311
+PetscErrorCode VecScatterFFTWToPetsc_FFTW(974,40498
+PETSC_EXTERN PetscErrorCode MatCreate_FFTW(1181,48803
src/mat/impls/fft/fftw/makefile,102
makefile:^?makefile^A,1
@@ -34358,39 +34358,39 @@
src/mat/impls/dense/mpi/mpidense.h,1098
mpidense.h:^?mpidense.h^A,1
- Mat Ae,8,191
- Mat Ae, Be,8,191
- Mat Ae, Be, Ce;8,191
-} Mat_MatMultDense;9,242
- PetscScalar *sendbuf;sendbuf12,337
- Mat atb;13,361
- PetscMPIInt *recvcounts;recvcounts14,381
- PetscMPIInt tag;15,408
-} Mat_TransMatMultDense;16,428
- PetscScalar *buf[buf19,528
- PetscMPIInt tag;20,551
- PetscMPIInt *recvcounts;recvcounts21,571
- PetscMPIInt *recvdispls;recvdispls22,598
- PetscInt alg;23,625
-} Mat_MatTransMultDense;24,666
- Mat A;27,709
- PetscBool donotstash;30,802
- MPI_Request *send_waits;send_waits31,887
- MPI_Request *recv_waits;recv_waits32,950
- PetscInt nsends,33,1016
- PetscInt nsends, nrecvs;33,1016
- PetscScalar *svalues,svalues34,1086
- PetscScalar *svalues, *rvalues;rvalues34,1086
- PetscInt rmax;35,1153
- Vec lvec;38,1285
- PetscSF Mvctx;39,1329
- PetscBool roworiented;40,1388
- Mat cmat;43,1524
- Vec cvec;44,1612
- const PetscScalar *ptrinuse;ptrinuse45,1689
- PetscInt vecinuse;46,1774
- PetscInt matinuse;47,1848
-} Mat_MPIDense;48,1925
+ Mat Ae,8,192
+ Mat Ae, Be,8,192
+ Mat Ae, Be, Ce;8,192
+} Mat_MatMultDense;9,243
+ PetscScalar *sendbuf;sendbuf12,338
+ Mat atb;13,362
+ PetscMPIInt *recvcounts;recvcounts14,382
+ PetscMPIInt tag;15,409
+} Mat_TransMatMultDense;16,429
+ PetscScalar *buf[buf19,529
+ PetscMPIInt tag;20,552
+ PetscMPIInt *recvcounts;recvcounts21,572
+ PetscMPIInt *recvdispls;recvdispls22,599
+ PetscInt alg;23,626
+} Mat_MatTransMultDense;24,667
+ Mat A;27,710
+ PetscBool donotstash;30,803
+ MPI_Request *send_waits;send_waits31,888
+ MPI_Request *recv_waits;recv_waits32,951
+ PetscInt nsends,33,1017
+ PetscInt nsends, nrecvs;33,1017
+ PetscScalar *svalues,svalues34,1087
+ PetscScalar *svalues, *rvalues;rvalues34,1087
+ PetscInt rmax;35,1154
+ Vec lvec;38,1286
+ PetscSF Mvctx;39,1330
+ PetscBool roworiented;40,1389
+ Mat cmat;43,1525
+ Vec cvec;44,1613
+ const PetscScalar *ptrinuse;ptrinuse45,1690
+ PetscInt vecinuse;46,1775
+ PetscInt matinuse;47,1849
+} Mat_MPIDense;48,1926
src/mat/impls/dense/mpi/mpidense.c,8879
mpidense.c:^?mpidense.c^A,1
@@ -34654,17 +34654,17 @@
static PetscErrorCode MatCompositeGetMatStructure_Composite(662,23791
PetscErrorCode MatCompositeGetMatStructure(686,24335
static PetscErrorCode MatCompositeSetMergeType_Composite(695,24628
-PetscErrorCode MatCompositeSetMergeType(723,25642
-static PetscErrorCode MatCompositeMerge_Composite(732,25966
-PetscErrorCode MatCompositeMerge(809,28956
-static PetscErrorCode MatCompositeGetNumberMat_Composite(817,29160
-PetscErrorCode MatCompositeGetNumberMat(841,29705
-static PetscErrorCode MatCompositeGetMat_Composite(850,29990
-PetscErrorCode MatCompositeGetMat(880,30863
-PetscErrorCode MatCompositeSetScalings_Composite(890,31187
-PetscErrorCode MatCompositeSetScalings(915,31948
-static struct _MatOps MatOps_Values 925,32320
-PETSC_EXTERN PetscErrorCode MatCreate_Composite(1090,40219
+PetscErrorCode MatCompositeSetMergeType(723,25643
+static PetscErrorCode MatCompositeMerge_Composite(732,25967
+PetscErrorCode MatCompositeMerge(809,28957
+static PetscErrorCode MatCompositeGetNumberMat_Composite(817,29161
+PetscErrorCode MatCompositeGetNumberMat(841,29706
+static PetscErrorCode MatCompositeGetMat_Composite(850,29991
+PetscErrorCode MatCompositeGetMat(880,30864
+PetscErrorCode MatCompositeSetScalings_Composite(890,31188
+PetscErrorCode MatCompositeSetScalings(915,31949
+static struct _MatOps MatOps_Values 925,32321
+PETSC_EXTERN PetscErrorCode MatCreate_Composite(1090,40220
src/mat/impls/composite/makefile,84
makefile:^?makefile^A,1
@@ -34786,61 +34786,81 @@
DIRS 3,34
LOCDIR 4,53
+src/mat/impls/baij/seq/baijfact.c,1020
+baijfact.c:^?baijfact.c^A,1
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2(8,139
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_NaturalOrdering(114,4076
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_inplace(220,8053
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_NaturalOrdering_inplace(329,11559
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_1(437,14967
+PetscErrorCode MatLUFactorNumeric_SeqBAIJ_1_inplace(601,20986
+static PetscErrorCode MatFactorGetSolverType_petsc(671,23589
+PETSC_INTERN PetscErrorCode MatGetFactor_seqbaij_petsc(678,23747
+PetscErrorCode MatLUFactor_SeqBAIJ(716,25968
+PetscErrorCode MatCholeskyFactorNumeric_SeqBAIJ_N(733,26459
+PetscErrorCode MatCholeskyFactorNumeric_SeqBAIJ_N_NaturalOrdering(868,30761
+PetscErrorCode MatICCFactorSymbolic_SeqBAIJ(998,34852
+PetscErrorCode MatCholeskyFactorSymbolic_SeqBAIJ(1222,43208
+PetscErrorCode MatSolve_SeqBAIJ_N_NaturalOrdering(1397,49722
+PetscErrorCode MatSolve_SeqBAIJ_N(1448,51441
+static PetscErrorCode MatBlockAbs_private(1508,53440
+PetscErrorCode MatILUDTFactor_SeqBAIJ(1525,53978
+
src/mat/impls/baij/seq/baij2.c,2699
baij2.c:^?baij2.c^A,1
PetscErrorCode MatIncreaseOverlap_SeqBAIJ(11,400
PetscErrorCode MatCreateSubMatrix_SeqBAIJ_Private(68,2264
PetscErrorCode MatCreateSubMatrix_SeqBAIJ(159,5423
-PetscErrorCode MatDestroySubMatrix_SeqBAIJ(205,7267
-PetscErrorCode MatDestroySubMatrices_SeqBAIJ(217,7620
-PetscErrorCode MatCreateSubMatrices_SeqBAIJ(252,8588
-PetscErrorCode MatMult_SeqBAIJ_1(267,9137
-PetscErrorCode MatMult_SeqBAIJ_2(312,10434
-PetscErrorCode MatMult_SeqBAIJ_3(365,11974
-PetscErrorCode MatMult_SeqBAIJ_4(426,13709
-PetscErrorCode MatMult_SeqBAIJ_5(487,15533
-PetscErrorCode MatMult_SeqBAIJ_6(552,17567
-PetscErrorCode MatMult_SeqBAIJ_7(623,19821
-PetscErrorCode MatMult_SeqBAIJ_9_AVX2(699,22497
-PetscErrorCode MatMult_SeqBAIJ_11(850,27289
-PetscErrorCode MatMult_SeqBAIJ_12_ver1(934,29358
-PetscErrorCode MatMultAdd_SeqBAIJ_12_ver1(1018,31418
-PetscErrorCode MatMult_SeqBAIJ_12_ver2(1111,33728
-PetscErrorCode MatMultAdd_SeqBAIJ_12_ver2(1223,37948
-PetscErrorCode MatMult_SeqBAIJ_12_AVX2(1353,42546
-PetscErrorCode MatMult_SeqBAIJ_15_ver1(1518,47669
-PetscErrorCode MatMult_SeqBAIJ_15_ver2(1614,50032
-PetscErrorCode MatMult_SeqBAIJ_15_ver3(1775,55936
-PetscErrorCode MatMult_SeqBAIJ_15_ver4(1901,61465
-PetscErrorCode MatMult_SeqBAIJ_N(2011,67026
-PetscErrorCode MatMultAdd_SeqBAIJ_1(2065,68533
-PetscErrorCode MatMultAdd_SeqBAIJ_2(2115,69902
-PetscErrorCode MatMultAdd_SeqBAIJ_3(2176,71593
-PetscErrorCode MatMultAdd_SeqBAIJ_4(2239,73398
-PetscErrorCode MatMultAdd_SeqBAIJ_5(2306,75373
-PetscErrorCode MatMultAdd_SeqBAIJ_6(2378,77560
-PetscErrorCode MatMultAdd_SeqBAIJ_7(2454,79966
-PetscErrorCode MatMultAdd_SeqBAIJ_9_AVX2(2535,82795
-PetscErrorCode MatMultAdd_SeqBAIJ_11(2686,87531
-PetscErrorCode MatMultAdd_SeqBAIJ_N(2782,92352
-PetscErrorCode MatMultHermitianTranspose_SeqBAIJ(2836,93825
-PetscErrorCode MatMultTranspose_SeqBAIJ(2846,94074
-PetscErrorCode MatMultHermitianTransposeAdd_SeqBAIJ(2856,94305
-PetscErrorCode MatMultTransposeAdd_SeqBAIJ(3017,99428
-PetscErrorCode MatScale_SeqBAIJ(3175,103807
-PetscErrorCode MatNorm_SeqBAIJ(3189,104228
-PetscErrorCode MatEqual_SeqBAIJ(3249,106052
-PetscErrorCode MatGetDiagonal_SeqBAIJ(3273,106859
-PetscErrorCode MatDiagonalScale_SeqBAIJ(3307,107813
-PetscErrorCode MatGetInfo_SeqBAIJ(3364,109494
-PetscErrorCode MatZeroEntries_SeqBAIJ(3388,110257
-PetscErrorCode MatMatMultSymbolic_SeqBAIJ_SeqDense(3397,110457
-PetscErrorCode MatMatMult_SeqBAIJ_1_Private(3405,110726
-PetscErrorCode MatMatMult_SeqBAIJ_2_Private(3453,112033
-PetscErrorCode MatMatMult_SeqBAIJ_3_Private(3505,113496
-PetscErrorCode MatMatMult_SeqBAIJ_4_Private(3561,115119
-PetscErrorCode MatMatMult_SeqBAIJ_5_Private(3621,116937
-PetscErrorCode MatMatMultNumeric_SeqBAIJ_SeqDense(3685,118972
+PetscErrorCode MatDestroySubMatrix_SeqBAIJ(205,7268
+PetscErrorCode MatDestroySubMatrices_SeqBAIJ(217,7621
+PetscErrorCode MatCreateSubMatrices_SeqBAIJ(252,8589
+PetscErrorCode MatMult_SeqBAIJ_1(267,9138
+PetscErrorCode MatMult_SeqBAIJ_2(312,10435
+PetscErrorCode MatMult_SeqBAIJ_3(365,11975
+PetscErrorCode MatMult_SeqBAIJ_4(426,13710
+PetscErrorCode MatMult_SeqBAIJ_5(487,15534
+PetscErrorCode MatMult_SeqBAIJ_6(552,17568
+PetscErrorCode MatMult_SeqBAIJ_7(623,19822
+PetscErrorCode MatMult_SeqBAIJ_9_AVX2(699,22498
+PetscErrorCode MatMult_SeqBAIJ_11(850,27290
+PetscErrorCode MatMult_SeqBAIJ_12_ver1(934,29359
+PetscErrorCode MatMultAdd_SeqBAIJ_12_ver1(1018,31419
+PetscErrorCode MatMult_SeqBAIJ_12_ver2(1111,33729
+PetscErrorCode MatMultAdd_SeqBAIJ_12_ver2(1223,37949
+PetscErrorCode MatMult_SeqBAIJ_12_AVX2(1353,42547
+PetscErrorCode MatMult_SeqBAIJ_15_ver1(1518,47670
+PetscErrorCode MatMult_SeqBAIJ_15_ver2(1614,50033
+PetscErrorCode MatMult_SeqBAIJ_15_ver3(1775,55937
+PetscErrorCode MatMult_SeqBAIJ_15_ver4(1901,61466
+PetscErrorCode MatMult_SeqBAIJ_N(2011,67027
+PetscErrorCode MatMultAdd_SeqBAIJ_1(2065,68534
+PetscErrorCode MatMultAdd_SeqBAIJ_2(2115,69903
+PetscErrorCode MatMultAdd_SeqBAIJ_3(2176,71594
+PetscErrorCode MatMultAdd_SeqBAIJ_4(2239,73399
+PetscErrorCode MatMultAdd_SeqBAIJ_5(2306,75374
+PetscErrorCode MatMultAdd_SeqBAIJ_6(2378,77561
+PetscErrorCode MatMultAdd_SeqBAIJ_7(2454,79967
+PetscErrorCode MatMultAdd_SeqBAIJ_9_AVX2(2535,82796
+PetscErrorCode MatMultAdd_SeqBAIJ_11(2686,87532
+PetscErrorCode MatMultAdd_SeqBAIJ_N(2782,92353
+PetscErrorCode MatMultHermitianTranspose_SeqBAIJ(2836,93826
+PetscErrorCode MatMultTranspose_SeqBAIJ(2846,94075
+PetscErrorCode MatMultHermitianTransposeAdd_SeqBAIJ(2856,94306
+PetscErrorCode MatMultTransposeAdd_SeqBAIJ(3017,99429
+PetscErrorCode MatScale_SeqBAIJ(3175,103808
+PetscErrorCode MatNorm_SeqBAIJ(3189,104229
+PetscErrorCode MatEqual_SeqBAIJ(3249,106053
+PetscErrorCode MatGetDiagonal_SeqBAIJ(3273,106860
+PetscErrorCode MatDiagonalScale_SeqBAIJ(3307,107814
+PetscErrorCode MatGetInfo_SeqBAIJ(3364,109495
+PetscErrorCode MatZeroEntries_SeqBAIJ(3388,110258
+PetscErrorCode MatMatMultSymbolic_SeqBAIJ_SeqDense(3397,110458
+PetscErrorCode MatMatMult_SeqBAIJ_1_Private(3405,110727
+PetscErrorCode MatMatMult_SeqBAIJ_2_Private(3453,112034
+PetscErrorCode MatMatMult_SeqBAIJ_3_Private(3505,113497
+PetscErrorCode MatMatMult_SeqBAIJ_4_Private(3561,115120
+PetscErrorCode MatMatMult_SeqBAIJ_5_Private(3621,116938
+PetscErrorCode MatMatMultNumeric_SeqBAIJ_SeqDense(3685,118973
src/mat/impls/baij/seq/aijbaij.c,198
aijbaij.c:^?aijbaij.c^A,1
@@ -35113,26 +35133,6 @@
PetscErrorCode MatLUFactorNumeric_SeqBAIJ_4_NaturalOrdering_SSE_usj_Inplace(1092,37414
PetscErrorCode MatLUFactorNumeric_SeqBAIJ_4_NaturalOrdering_SSE_usj(1535,52400
-src/mat/impls/baij/seq/baijfact.c,1020
-baijfact.c:^?baijfact.c^A,1
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2(8,139
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_NaturalOrdering(114,4076
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_inplace(220,8053
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_2_NaturalOrdering_inplace(329,11559
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_1(437,14967
-PetscErrorCode MatLUFactorNumeric_SeqBAIJ_1_inplace(601,20986
-static PetscErrorCode MatFactorGetSolverType_petsc(671,23589
-PETSC_INTERN PetscErrorCode MatGetFactor_seqbaij_petsc(678,23747
-PetscErrorCode MatLUFactor_SeqBAIJ(716,25968
-PetscErrorCode MatCholeskyFactorNumeric_SeqBAIJ_N(733,26459
-PetscErrorCode MatCholeskyFactorNumeric_SeqBAIJ_N_NaturalOrdering(868,30761
-PetscErrorCode MatICCFactorSymbolic_SeqBAIJ(998,34852
-PetscErrorCode MatCholeskyFactorSymbolic_SeqBAIJ(1222,43208
-PetscErrorCode MatSolve_SeqBAIJ_N_NaturalOrdering(1397,49722
-PetscErrorCode MatSolve_SeqBAIJ_N(1448,51441
-static PetscErrorCode MatBlockAbs_private(1508,53440
-PetscErrorCode MatILUDTFactor_SeqBAIJ(1525,53978
-
src/mat/impls/baij/seq/baij.h,1633
baij.h:^?baij.h^A,1
#define __BAIJ_H3,18
@@ -35270,29 +35270,29 @@
src/mat/impls/baij/seq/baijmkl/baijmkl.c,1202
baijmkl.c:^?baijmkl.c^A,1
- #define MKL_ILP6411,398
-static PetscBool PetscSeqBAIJSupportsZeroBased(15,450
- PetscBool sparse_optimized;33,1035
- sparse_matrix_t bsrA;34,1140
- struct matrix_descr descr;35,1238
- PetscInt *ai1;ai136,1267
- PetscInt *aj1;aj137,1294
-} Mat_SeqBAIJMKL;38,1321
-PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJMKL_SeqBAIJ(43,1487
-static PetscErrorCode MatDestroy_SeqBAIJMKL(123,4170
-static PetscErrorCode MatSeqBAIJMKL_create_mkl_handle(142,4840
-static PetscErrorCode MatDuplicate_SeqBAIJMKL(194,7147
-static PetscErrorCode MatMult_SeqBAIJMKL_SpMV2(210,7675
-static PetscErrorCode MatMultTranspose_SeqBAIJMKL_SpMV2(241,8958
-static PetscErrorCode MatMultAdd_SeqBAIJMKL_SpMV2(272,10255
-static PetscErrorCode MatMultTransposeAdd_SeqBAIJMKL_SpMV2(314,12182
-static PetscErrorCode MatScale_SeqBAIJMKL(357,14164
-static PetscErrorCode MatDiagonalScale_SeqBAIJMKL(365,14381
-static PetscErrorCode MatAXPY_SeqBAIJMKL(373,14606
-PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(387,15244
-static PetscErrorCode MatAssemblyEnd_SeqBAIJMKL(416,16350
-PetscErrorCode MatCreateSeqBAIJMKL(485,19525
-PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJMKL(495,19905
+ #define MKL_ILP6411,399
+static PetscBool PetscSeqBAIJSupportsZeroBased(15,451
+ PetscBool sparse_optimized;33,1036
+ sparse_matrix_t bsrA;34,1141
+ struct matrix_descr descr;35,1239
+ PetscInt *ai1;ai136,1268
+ PetscInt *aj1;aj137,1295
+} Mat_SeqBAIJMKL;38,1322
+PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJMKL_SeqBAIJ(43,1488
+static PetscErrorCode MatDestroy_SeqBAIJMKL(123,4171
+static PetscErrorCode MatSeqBAIJMKL_create_mkl_handle(142,4841
+static PetscErrorCode MatDuplicate_SeqBAIJMKL(194,7148
+static PetscErrorCode MatMult_SeqBAIJMKL_SpMV2(210,7676
+static PetscErrorCode MatMultTranspose_SeqBAIJMKL_SpMV2(241,8959
+static PetscErrorCode MatMultAdd_SeqBAIJMKL_SpMV2(272,10256
+static PetscErrorCode MatMultTransposeAdd_SeqBAIJMKL_SpMV2(314,12183
+static PetscErrorCode MatScale_SeqBAIJMKL(357,14165
+static PetscErrorCode MatDiagonalScale_SeqBAIJMKL(365,14382
+static PetscErrorCode MatAXPY_SeqBAIJMKL(373,14607
+PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(387,15245
+static PetscErrorCode MatAssemblyEnd_SeqBAIJMKL(416,16351
+PetscErrorCode MatCreateSeqBAIJMKL(485,19526
+PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJMKL(495,19906
src/mat/impls/baij/seq/baijmkl/makefile,100
makefile:^?makefile^A,1
@@ -35356,60 +35356,60 @@
PetscErrorCode MatView_MPIBAIJ(1164,44650
PetscErrorCode MatDestroy_MPIBAIJ(1179,45331
PetscErrorCode MatMult_MPIBAIJ(1222,47398
-PetscErrorCode MatMultAdd_MPIBAIJ(1239,48131
-PetscErrorCode MatMultTranspose_MPIBAIJ(1251,48574
-PetscErrorCode MatMultTransposeAdd_MPIBAIJ(1266,49100
-PetscErrorCode MatGetDiagonal_MPIBAIJ(1285,49747
-PetscErrorCode MatScale_MPIBAIJ(1293,50041
-PetscErrorCode MatGetRow_MPIBAIJ(1303,50259
-PetscErrorCode MatRestoreRow_MPIBAIJ(1386,53134
-PetscErrorCode MatZeroEntries_MPIBAIJ(1396,53480
-PetscErrorCode MatGetInfo_MPIBAIJ(1406,53692
-PetscErrorCode MatSetOption_MPIBAIJ(1460,55503
-PetscErrorCode MatTranspose_MPIBAIJ(1508,56874
-PetscErrorCode MatDiagonalScale_MPIBAIJ(1575,59079
-PetscErrorCode MatZeroRows_MPIBAIJ(1605,60196
-PetscErrorCode MatZeroRowsColumns_MPIBAIJ(1663,62629
-PetscErrorCode MatSetUnfactored_MPIBAIJ(1759,66645
-PetscErrorCode MatEqual_MPIBAIJ(1770,66903
-PetscErrorCode MatCopy_MPIBAIJ(1788,67383
-PetscErrorCode MatSetUp_MPIBAIJ(1805,67959
-PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(1812,68150
-PetscErrorCode MatAXPY_MPIBAIJ(1823,68563
-PetscErrorCode MatConjugate_MPIBAIJ(1866,70576
-PetscErrorCode MatRealPart_MPIBAIJ(1878,70847
-PetscErrorCode MatImaginaryPart_MPIBAIJ(1888,71050
-PetscErrorCode MatCreateSubMatrix_MPIBAIJ(1898,71268
-PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(1925,72407
-PetscErrorCode MatPermute_MPIBAIJ(2051,77082
-PetscErrorCode MatGetGhosts_MPIBAIJ(2090,78395
-PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(2101,78711
-PetscErrorCode MatSOR_MPIBAIJ(2191,82734
-PetscErrorCode MatGetColumnReductions_MPIBAIJ(2259,85453
-PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(2375,89644
-PetscErrorCode MatShift_MPIBAIJ(2387,90069
-PetscErrorCode MatMissingDiagonal_MPIBAIJ(2404,90573
-PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(2419,91032
-static struct _MatOps MatOps_Values 2427,91252
-PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(2582,99368
-PetscErrorCode MatMPIBAIJSetPreallocationCSR(2676,103569
-PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(2686,104013
-PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(2752,106589
-PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(2794,108322
-PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(2863,111113
-PetscErrorCode MatMPIBAIJSetPreallocation(3037,119134
-PetscErrorCode MatCreateBAIJ(3142,124443
-static PetscErrorCode MatDuplicate_MPIBAIJ(3160,125087
-PetscErrorCode MatLoad_MPIBAIJ_Binary(3237,127757
-PetscErrorCode MatLoad_MPIBAIJ(3338,132499
-PetscErrorCode MatMPIBAIJSetHashTableFactor(3363,133288
-PetscErrorCode MatSetHashTableFactor_MPIBAIJ(3370,133491
-PetscErrorCode MatMPIBAIJGetSeqBAIJ(3380,133704
- #define matmpibaijsetvaluesblocked_ 3398,134315
- #define matmpibaijsetvaluesblocked_ 3400,134426
-PetscErrorCode matmpibaijsetvaluesblocked_(3424,134998
-PetscErrorCode MatCreateMPIBAIJWithArrays(3571,141265
-PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(3587,142120
+PetscErrorCode MatMultAdd_MPIBAIJ(1239,48132
+PetscErrorCode MatMultTranspose_MPIBAIJ(1251,48575
+PetscErrorCode MatMultTransposeAdd_MPIBAIJ(1266,49101
+PetscErrorCode MatGetDiagonal_MPIBAIJ(1285,49748
+PetscErrorCode MatScale_MPIBAIJ(1293,50042
+PetscErrorCode MatGetRow_MPIBAIJ(1303,50260
+PetscErrorCode MatRestoreRow_MPIBAIJ(1386,53135
+PetscErrorCode MatZeroEntries_MPIBAIJ(1396,53481
+PetscErrorCode MatGetInfo_MPIBAIJ(1406,53693
+PetscErrorCode MatSetOption_MPIBAIJ(1460,55504
+PetscErrorCode MatTranspose_MPIBAIJ(1508,56875
+PetscErrorCode MatDiagonalScale_MPIBAIJ(1575,59080
+PetscErrorCode MatZeroRows_MPIBAIJ(1605,60197
+PetscErrorCode MatZeroRowsColumns_MPIBAIJ(1663,62630
+PetscErrorCode MatSetUnfactored_MPIBAIJ(1759,66646
+PetscErrorCode MatEqual_MPIBAIJ(1770,66904
+PetscErrorCode MatCopy_MPIBAIJ(1788,67384
+PetscErrorCode MatSetUp_MPIBAIJ(1805,67960
+PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(1812,68151
+PetscErrorCode MatAXPY_MPIBAIJ(1823,68564
+PetscErrorCode MatConjugate_MPIBAIJ(1866,70577
+PetscErrorCode MatRealPart_MPIBAIJ(1878,70848
+PetscErrorCode MatImaginaryPart_MPIBAIJ(1888,71051
+PetscErrorCode MatCreateSubMatrix_MPIBAIJ(1898,71269
+PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(1925,72408
+PetscErrorCode MatPermute_MPIBAIJ(2051,77083
+PetscErrorCode MatGetGhosts_MPIBAIJ(2090,78396
+PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(2101,78712
+PetscErrorCode MatSOR_MPIBAIJ(2191,82735
+PetscErrorCode MatGetColumnReductions_MPIBAIJ(2259,85454
+PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(2375,89645
+PetscErrorCode MatShift_MPIBAIJ(2387,90070
+PetscErrorCode MatMissingDiagonal_MPIBAIJ(2404,90574
+PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(2419,91033
+static struct _MatOps MatOps_Values 2427,91253
+PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(2582,99369
+PetscErrorCode MatMPIBAIJSetPreallocationCSR(2676,103577
+PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(2686,104021
+PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(2752,106597
+PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(2794,108330
+PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(2863,111128
+PetscErrorCode MatMPIBAIJSetPreallocation(3039,119210
+PetscErrorCode MatCreateBAIJ(3146,124561
+static PetscErrorCode MatDuplicate_MPIBAIJ(3164,125205
+PetscErrorCode MatLoad_MPIBAIJ_Binary(3241,127875
+PetscErrorCode MatLoad_MPIBAIJ(3342,132617
+PetscErrorCode MatMPIBAIJSetHashTableFactor(3367,133413
+PetscErrorCode MatSetHashTableFactor_MPIBAIJ(3374,133616
+PetscErrorCode MatMPIBAIJGetSeqBAIJ(3384,133829
+ #define matmpibaijsetvaluesblocked_ 3402,134440
+ #define matmpibaijsetvaluesblocked_ 3404,134551
+PetscErrorCode matmpibaijsetvaluesblocked_(3428,135130
+PetscErrorCode MatCreateMPIBAIJWithArrays(3575,141416
+PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(3591,142271
src/mat/impls/baij/mpi/mpiaijbaij.c,61
mpiaijbaij.c:^?mpiaijbaij.c^A,1
@@ -35477,8 +35477,8 @@
mpibaijmkl.c:^?mpibaijmkl.c^A,1
static PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJMKL(5,139
static PetscErrorCode MatConvert_MPIBAIJ_MPIBAIJMKL(16,658
-PetscErrorCode MatCreateBAIJMKL(133,6442
-PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJMKL(151,7095
+PetscErrorCode MatCreateBAIJMKL(133,6470
+PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJMKL(151,7123
src/mat/impls/baij/mpi/baijmkl/makefile,100
makefile:^?makefile^A,1
@@ -35508,35 +35508,43 @@
DIRS 3,34
LOCDIR 4,53
-src/mat/impls/aij/seq/inode.c,1576
-inode.c:^?inode.c^A,1
-static PetscErrorCode MatCreateColInode_Private(8,216
-static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Symmetric(52,1465
-static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(137,4418
-static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode(213,6935
-static PetscErrorCode MatRestoreRowIJ_SeqAIJ_Inode(230,7600
-static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(246,8151
-static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode(321,10608
-static PetscErrorCode MatRestoreColumnIJ_SeqAIJ_Inode(338,11318
-PetscErrorCode MatMult_SeqAIJ_Inode(353,11874
-PetscErrorCode MatMultAdd_SeqAIJ_Inode(557,17661
-PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(757,22883
-PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(1190,34547
-PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(1975,60916
-PetscErrorCode MatSolve_SeqAIJ_Inode(2395,74709
-PetscErrorCode MatColoringPatch_SeqAIJ_Inode(2797,86290
-PetscErrorCode MatSOR_SeqAIJ_Inode(2828,87549
-PetscErrorCode MatMultDiagonalBlock_SeqAIJ_Inode(4193,135371
-static PetscErrorCode MatSeqAIJ_Inode_ResetOps(4277,138643
-PetscErrorCode MatSeqAIJCheckInode(4300,139427
-PetscErrorCode MatDuplicate_SeqAIJ_Inode(4364,141859
-static inline PetscErrorCode MatGetRow_FactoredLU(4405,143449
-PetscErrorCode MatSeqAIJCheckInode_FactorLU(4427,144119
-PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(4494,146653
-PetscErrorCode MatInodeAdjustForInodes(4508,147006
-PetscErrorCode MatInodeAdjustForInodes_SeqAIJ_Inode(4515,147215
-PetscErrorCode MatInodeGetInodeSizes(4597,150208
-PetscErrorCode MatInodeGetInodeSizes_SeqAIJ_Inode(4608,150671
+src/mat/impls/aij/seq/aijfact.c,1983
+aijfact.c:^?aijfact.c^A,1
+PetscErrorCode MatGetOrdering_Flow_SeqAIJ(12,381
+static PetscErrorCode MatFactorGetSolverType_petsc(91,3191
+PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(98,3349
+PetscErrorCode MatLUFactorSymbolic_SeqAIJ_inplace(136,5417
+PetscErrorCode MatLUFactorSymbolic_SeqAIJ(283,10518
+PetscErrorCode MatFactorDumpMatrix(433,15882
+PetscErrorCode MatLUFactorNumeric_SeqAIJ(451,16494
+PetscErrorCode MatLUFactorNumeric_SeqAIJ_inplace(619,22533
+PetscErrorCode MatLUFactorNumeric_SeqAIJ_InplaceWithPerm(768,28115
+PetscErrorCode MatLUFactor_SeqAIJ(933,34054
+PetscErrorCode MatSolve_SeqAIJ_inplace(950,34564
+PetscErrorCode MatMatSolve_SeqAIJ_inplace(1003,36077
+PetscErrorCode MatMatSolve_SeqAIJ(1062,38174
+PetscErrorCode MatSolve_SeqAIJ_InplaceWithPerm(1122,40293
+PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering_inplace(1179,42040
+PetscErrorCode MatSolveAdd_SeqAIJ_inplace(1232,43497
+PetscErrorCode MatSolveAdd_SeqAIJ(1285,45024
+PetscErrorCode MatSolveTranspose_SeqAIJ_inplace(1342,46580
+PetscErrorCode MatSolveTranspose_SeqAIJ(1398,48220
+PetscErrorCode MatSolveTransposeAdd_SeqAIJ_inplace(1454,49859
+PetscErrorCode MatSolveTransposeAdd_SeqAIJ(1511,51545
+PetscErrorCode MatILUFactorSymbolic_SeqAIJ_ilu0(1586,53863
+PetscErrorCode MatILUFactorSymbolic_SeqAIJ(1648,55791
+PetscErrorCode MatILUFactorSymbolic_SeqAIJ_inplace(1816,62957
+PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ(2002,70651
+PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ_inplace(2164,76452
+PetscErrorCode MatICCFactorSymbolic_SeqAIJ(2340,82309
+PetscErrorCode MatICCFactorSymbolic_SeqAIJ_inplace(2544,90653
+PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ(2747,98645
+PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ_inplace(2918,105028
+PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering(3086,111124
+PetscErrorCode MatSolve_SeqAIJ(3131,112335
+PetscErrorCode MatILUDTFactor_SeqAIJ(3187,114000
+PetscErrorCode MatILUDTFactorSymbolic_SeqAIJ(3420,122332
+PetscErrorCode MatILUDTFactorNumeric_SeqAIJ(3435,122867
src/mat/impls/aij/seq/aij.h,3130
aij.h:^?aij.h^A,1
@@ -35618,9 +35626,9 @@
#define PetscSparseDensePlusDot(540,28884
#define _MM_SCALE_8 550,29357
static inline void PetscSparseDensePlusDot_AVX512_Private(553,29393
-#define PetscSparseDenseMaxDot(600,30963
-#define MatRowMergeMax_SeqAIJ(609,31242
-#define MatMergeRows_SeqAIJ(626,31708
+#define PetscSparseDenseMaxDot(600,30965
+#define MatRowMergeMax_SeqAIJ(609,31244
+#define MatMergeRows_SeqAIJ(626,31710
src/mat/impls/aij/seq/aij.c,6870
aij.c:^?aij.c^A,1
@@ -35682,83 +35690,113 @@
PetscErrorCode MatIsHermitian_SeqAIJ(2422,86301
PetscErrorCode MatDiagonalScale_SeqAIJ(2429,86486
PetscErrorCode MatCreateSubMatrix_SeqAIJ(2470,87905
-PetscErrorCode MatGetMultiProcBlock_SeqAIJ(2634,93669
-PetscErrorCode MatILUFactor_SeqAIJ(2652,94269
-PetscErrorCode MatScale_SeqAIJ(2696,95653
-PetscErrorCode MatDestroySubMatrix_Private(2712,96132
-PetscErrorCode MatDestroySubMatrix_SeqAIJ(2754,97438
-PetscErrorCode MatDestroySubMatrices_SeqAIJ(2766,97790
-PetscErrorCode MatCreateSubMatrices_SeqAIJ(2801,98756
-PetscErrorCode MatIncreaseOverlap_SeqAIJ(2812,99133
-PetscErrorCode MatPermute_SeqAIJ(2893,101935
-PetscErrorCode MatCopy_SeqAIJ(2943,103780
-PetscErrorCode MatSetUp_SeqAIJ(2963,104656
-PETSC_INTERN PetscErrorCode MatSeqAIJGetArray_SeqAIJ(2970,104818
-PETSC_INTERN PetscErrorCode MatSeqAIJRestoreArray_SeqAIJ(2979,105012
-PetscErrorCode MatAXPYGetPreallocation_SeqX_private(2990,105292
-PetscErrorCode MatAXPYGetPreallocation_SeqAIJ(3011,106040
-PetscErrorCode MatAXPY_SeqAIJ(3023,106417
-PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(3073,108472
-PetscErrorCode MatGetRowMaxAbs_SeqAIJ(3091,108888
-PetscErrorCode MatGetRowMax_SeqAIJ(3128,109938
-PetscErrorCode MatGetRowMinAbs_SeqAIJ(3179,111459
-PetscErrorCode MatGetRowMin_SeqAIJ(3229,112928
-PetscErrorCode MatInvertBlockDiagonal_SeqAIJ(3281,114457
-static PetscErrorCode MatSetRandom_SeqAIJ(3412,119511
-PetscErrorCode MatSetRandomSkipColumnRange_SeqAIJ_Private(3439,120430
-static struct _MatOps MatOps_Values 3463,121320
-PetscErrorCode MatSeqAIJSetColumnIndices_SeqAIJ(3615,129809
-PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJ(3633,130383
-PetscErrorCode MatSeqAIJSetColumnIndices(3705,132889
-PetscErrorCode MatStoreValues_SeqAIJ(3716,133280
-PetscErrorCode MatStoreValues(3778,135564
-PetscErrorCode MatRetrieveValues_SeqAIJ(3788,135967
-PetscErrorCode MatRetrieveValues(3815,136839
-PetscErrorCode MatCreateSeqAIJ(3876,139524
-PetscErrorCode MatSeqAIJSetPreallocation(3936,142056
-PetscErrorCode MatSeqAIJSetPreallocation_SeqAIJ(3945,142364
-PetscErrorCode MatResetPreallocation_SeqAIJ(4039,145709
-PetscErrorCode MatSeqAIJSetPreallocationCSR(4094,147918
-PetscErrorCode MatSeqAIJSetPreallocationCSR_SeqAIJ(4103,148289
-PetscErrorCode MatSeqAIJKron(4153,149955
-PetscErrorCode MatSeqAIJKron_SeqAIJ(4169,150447
-PetscErrorCode MatMatMultNumeric_SeqDense_SeqAIJ(4234,153255
-PetscErrorCode MatMatMultSymbolic_SeqDense_SeqAIJ(4274,154255
-PetscErrorCode MatSeqAIJGetArray(4383,158724
-PetscErrorCode MatSeqAIJRestoreArray(4409,159331
-PetscErrorCode MatSeqAIJGetArrayRead(4439,160045
-PetscErrorCode MatSeqAIJRestoreArrayRead(4467,160656
-PetscErrorCode MatSeqAIJGetArrayWrite(4495,161290
-PetscErrorCode MatSeqAIJRestoreArrayWrite(4525,161993
-PetscErrorCode MatSeqAIJGetCSRAndMemType(4563,163177
-PetscErrorCode MatSeqAIJGetMaxRowNonzeros(4595,164065
-PetscErrorCode MatSetPreallocationCOO_SeqAIJ(4604,164244
-static PetscErrorCode MatSetValuesCOO_SeqAIJ(4714,168465
-PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJ(4739,169302
-PetscErrorCode MatDuplicateNoCreate_SeqAIJ(4833,175163
-PetscErrorCode MatDuplicate_SeqAIJ(4921,178249
-PetscErrorCode MatLoad_SeqAIJ(4932,178761
-PetscErrorCode MatLoad_SeqAIJ_Binary(4957,179844
-PetscErrorCode MatEqual_SeqAIJ(5017,182910
-PetscErrorCode MatCreateSeqAIJWithArrays(5099,185472
-PetscErrorCode MatCreateSeqAIJFromTriple(5184,189115
-PetscErrorCode MatSeqAIJInvalidateDiagonal(5211,190017
-PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqAIJ(5223,190278
-PetscErrorCode MatSetSeqMat_SeqAIJ(5236,190817
-PetscFunctionList MatSeqAIJList 5297,193382
-PetscErrorCode MatSeqAIJSetType(5315,193768
-PetscErrorCode MatSeqAIJRegister(5350,194879
-PetscBool MatSeqAIJRegisterAllCalled 5358,195149
-PetscErrorCode MatSeqAIJRegisterAll(5369,195379
- #define matsetvaluesseqaij_ 5398,196467
- #define matsetvaluesseqaij_ 5400,196562
-#undef PetscCall5407,196798
-#define PetscCall(5408,196815
-#undef SETERRQ5417,197113
-#define SETERRQ(5418,197128
-PETSC_EXTERN void matsetvaluesseqaij_(5424,197315
-#undef PetscCall5505,200121
-#undef SETERRQ5506,200138
+PetscErrorCode MatGetMultiProcBlock_SeqAIJ(2638,94032
+PetscErrorCode MatILUFactor_SeqAIJ(2656,94632
+PetscErrorCode MatScale_SeqAIJ(2700,96016
+PetscErrorCode MatDestroySubMatrix_Private(2716,96495
+PetscErrorCode MatDestroySubMatrix_SeqAIJ(2758,97801
+PetscErrorCode MatDestroySubMatrices_SeqAIJ(2770,98153
+PetscErrorCode MatCreateSubMatrices_SeqAIJ(2805,99119
+PetscErrorCode MatIncreaseOverlap_SeqAIJ(2816,99496
+PetscErrorCode MatPermute_SeqAIJ(2897,102298
+PetscErrorCode MatCopy_SeqAIJ(2947,104143
+PetscErrorCode MatSetUp_SeqAIJ(2967,105019
+PETSC_INTERN PetscErrorCode MatSeqAIJGetArray_SeqAIJ(2974,105181
+PETSC_INTERN PetscErrorCode MatSeqAIJRestoreArray_SeqAIJ(2983,105375
+PetscErrorCode MatAXPYGetPreallocation_SeqX_private(2994,105655
+PetscErrorCode MatAXPYGetPreallocation_SeqAIJ(3015,106403
+PetscErrorCode MatAXPY_SeqAIJ(3027,106780
+PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(3077,108835
+PetscErrorCode MatGetRowMaxAbs_SeqAIJ(3095,109251
+PetscErrorCode MatGetRowMax_SeqAIJ(3132,110301
+PetscErrorCode MatGetRowMinAbs_SeqAIJ(3183,111822
+PetscErrorCode MatGetRowMin_SeqAIJ(3233,113291
+PetscErrorCode MatInvertBlockDiagonal_SeqAIJ(3285,114820
+static PetscErrorCode MatSetRandom_SeqAIJ(3416,119874
+PetscErrorCode MatSetRandomSkipColumnRange_SeqAIJ_Private(3443,120793
+static struct _MatOps MatOps_Values 3467,121683
+PetscErrorCode MatSeqAIJSetColumnIndices_SeqAIJ(3619,130172
+PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJ(3637,130746
+PetscErrorCode MatSeqAIJSetColumnIndices(3709,133252
+PetscErrorCode MatStoreValues_SeqAIJ(3720,133643
+PetscErrorCode MatStoreValues(3782,135926
+PetscErrorCode MatRetrieveValues_SeqAIJ(3792,136329
+PetscErrorCode MatRetrieveValues(3819,137201
+PetscErrorCode MatCreateSeqAIJ(3880,139886
+PetscErrorCode MatSeqAIJSetPreallocation(3940,142418
+PetscErrorCode MatSeqAIJSetPreallocation_SeqAIJ(3949,142726
+PetscErrorCode MatResetPreallocation_SeqAIJ(4043,146071
+PetscErrorCode MatSeqAIJSetPreallocationCSR(4098,148280
+PetscErrorCode MatSeqAIJSetPreallocationCSR_SeqAIJ(4107,148651
+PetscErrorCode MatSeqAIJKron(4157,150317
+PetscErrorCode MatSeqAIJKron_SeqAIJ(4173,150809
+PetscErrorCode MatMatMultNumeric_SeqDense_SeqAIJ(4238,153617
+PetscErrorCode MatMatMultSymbolic_SeqDense_SeqAIJ(4278,154617
+PetscErrorCode MatSeqAIJGetArray(4387,159086
+PetscErrorCode MatSeqAIJRestoreArray(4413,159693
+PetscErrorCode MatSeqAIJGetArrayRead(4443,160407
+PetscErrorCode MatSeqAIJRestoreArrayRead(4471,161018
+PetscErrorCode MatSeqAIJGetArrayWrite(4499,161652
+PetscErrorCode MatSeqAIJRestoreArrayWrite(4529,162355
+PetscErrorCode MatSeqAIJGetCSRAndMemType(4567,163539
+PetscErrorCode MatSeqAIJGetMaxRowNonzeros(4599,164427
+PetscErrorCode MatSetPreallocationCOO_SeqAIJ(4608,164606
+static PetscErrorCode MatSetValuesCOO_SeqAIJ(4718,168827
+PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJ(4743,169664
+PetscErrorCode MatDuplicateNoCreate_SeqAIJ(4837,175525
+PetscErrorCode MatDuplicate_SeqAIJ(4925,178611
+PetscErrorCode MatLoad_SeqAIJ(4936,179123
+PetscErrorCode MatLoad_SeqAIJ_Binary(4961,180206
+PetscErrorCode MatEqual_SeqAIJ(5021,183272
+PetscErrorCode MatCreateSeqAIJWithArrays(5103,185834
+PetscErrorCode MatCreateSeqAIJFromTriple(5188,189477
+PetscErrorCode MatSeqAIJInvalidateDiagonal(5215,190379
+PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqAIJ(5227,190640
+PetscErrorCode MatSetSeqMat_SeqAIJ(5240,191179
+PetscFunctionList MatSeqAIJList 5301,193744
+PetscErrorCode MatSeqAIJSetType(5319,194131
+PetscErrorCode MatSeqAIJRegister(5354,195242
+PetscBool MatSeqAIJRegisterAllCalled 5362,195512
+PetscErrorCode MatSeqAIJRegisterAll(5373,195742
+ #define matsetvaluesseqaij_ 5402,196830
+ #define matsetvaluesseqaij_ 5404,196925
+#undef PetscCall5411,197161
+#define PetscCall(5412,197178
+#undef SETERRQ5421,197476
+#define SETERRQ(5422,197491
+PETSC_EXTERN void matsetvaluesseqaij_(5428,197678
+#undef PetscCall5509,200484
+#undef SETERRQ5510,200501
+
+src/mat/impls/aij/seq/inode.c,1576
+inode.c:^?inode.c^A,1
+static PetscErrorCode MatCreateColInode_Private(8,216
+static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Symmetric(52,1465
+static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(137,4418
+static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode(213,6935
+static PetscErrorCode MatRestoreRowIJ_SeqAIJ_Inode(230,7600
+static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(246,8151
+static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode(321,10608
+static PetscErrorCode MatRestoreColumnIJ_SeqAIJ_Inode(338,11318
+PetscErrorCode MatMult_SeqAIJ_Inode(353,11874
+PetscErrorCode MatMultAdd_SeqAIJ_Inode(557,17661
+PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(757,22883
+PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(1190,34547
+PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(1975,60916
+PetscErrorCode MatSolve_SeqAIJ_Inode(2395,74709
+PetscErrorCode MatColoringPatch_SeqAIJ_Inode(2797,86290
+PetscErrorCode MatSOR_SeqAIJ_Inode(2828,87549
+PetscErrorCode MatMultDiagonalBlock_SeqAIJ_Inode(4193,135371
+static PetscErrorCode MatSeqAIJ_Inode_ResetOps(4277,138643
+PetscErrorCode MatSeqAIJCheckInode(4300,139427
+PetscErrorCode MatDuplicate_SeqAIJ_Inode(4364,141859
+static inline PetscErrorCode MatGetRow_FactoredLU(4405,143449
+PetscErrorCode MatSeqAIJCheckInode_FactorLU(4427,144119
+PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(4494,146653
+PetscErrorCode MatInodeAdjustForInodes(4508,147006
+PetscErrorCode MatInodeAdjustForInodes_SeqAIJ_Inode(4515,147215
+PetscErrorCode MatInodeGetInodeSizes(4597,150208
+PetscErrorCode MatInodeGetInodeSizes_SeqAIJ_Inode(4608,150671
src/mat/impls/aij/seq/fdaij.c,165
fdaij.c:^?fdaij.c^A,1
@@ -35878,44 +35916,6 @@
aijhdf5.c:^?aijhdf5.c^A,1
PetscErrorCode MatLoad_AIJ_HDF5(8,171
-src/mat/impls/aij/seq/aijfact.c,1983
-aijfact.c:^?aijfact.c^A,1
-PetscErrorCode MatGetOrdering_Flow_SeqAIJ(12,381
-static PetscErrorCode MatFactorGetSolverType_petsc(91,3191
-PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(98,3349
-PetscErrorCode MatLUFactorSymbolic_SeqAIJ_inplace(136,5417
-PetscErrorCode MatLUFactorSymbolic_SeqAIJ(283,10518
-PetscErrorCode MatFactorDumpMatrix(433,15882
-PetscErrorCode MatLUFactorNumeric_SeqAIJ(451,16494
-PetscErrorCode MatLUFactorNumeric_SeqAIJ_inplace(619,22533
-PetscErrorCode MatLUFactorNumeric_SeqAIJ_InplaceWithPerm(768,28115
-PetscErrorCode MatLUFactor_SeqAIJ(933,34054
-PetscErrorCode MatSolve_SeqAIJ_inplace(950,34564
-PetscErrorCode MatMatSolve_SeqAIJ_inplace(1003,36077
-PetscErrorCode MatMatSolve_SeqAIJ(1062,38174
-PetscErrorCode MatSolve_SeqAIJ_InplaceWithPerm(1122,40293
-PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering_inplace(1179,42040
-PetscErrorCode MatSolveAdd_SeqAIJ_inplace(1232,43497
-PetscErrorCode MatSolveAdd_SeqAIJ(1285,45024
-PetscErrorCode MatSolveTranspose_SeqAIJ_inplace(1342,46580
-PetscErrorCode MatSolveTranspose_SeqAIJ(1398,48220
-PetscErrorCode MatSolveTransposeAdd_SeqAIJ_inplace(1454,49859
-PetscErrorCode MatSolveTransposeAdd_SeqAIJ(1511,51545
-PetscErrorCode MatILUFactorSymbolic_SeqAIJ_ilu0(1586,53863
-PetscErrorCode MatILUFactorSymbolic_SeqAIJ(1648,55791
-PetscErrorCode MatILUFactorSymbolic_SeqAIJ_inplace(1816,62957
-PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ(2002,70651
-PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ_inplace(2164,76452
-PetscErrorCode MatICCFactorSymbolic_SeqAIJ(2340,82309
-PetscErrorCode MatICCFactorSymbolic_SeqAIJ_inplace(2544,90653
-PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ(2747,98645
-PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ_inplace(2918,105028
-PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering(3086,111124
-PetscErrorCode MatSolve_SeqAIJ(3131,112335
-PetscErrorCode MatILUDTFactor_SeqAIJ(3187,114000
-PetscErrorCode MatILUDTFactorSymbolic_SeqAIJ(3420,122331
-PetscErrorCode MatILUDTFactorNumeric_SeqAIJ(3435,122866
-
src/mat/impls/aij/seq/seqhipsparse/hipsparsematimpl.h,10063
hipsparsematimpl.h:^?hipsparsematimpl.h^A,1
#define PETSC_HIPSPARSEMATIMPL_H5,144
@@ -36349,6 +36349,10 @@
PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(453,18535
PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_ViennaCL(504,20911
+src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu,34
+aijcusparse.cu:^?aijcusparse.cu^A,1
+ Function csric02(1701,94983
+
src/mat/impls/aij/seq/seqcusparse/aijcusparseband.cu,850
aijcusparseband.cu:^?aijcusparseband.cu^A,1
#define PETSC_SKIP_SPINLOCK4,102
@@ -36370,10 +36374,6 @@
__global__ void __launch_bounds__(407,17984
static PetscErrorCode MatSolve_SeqAIJCUSPARSEBAND(463,20747
-src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu,34
-aijcusparse.cu:^?aijcusparse.cu^A,1
- Function csric02(1701,94983
-
src/mat/impls/aij/seq/seqcusparse/makefile,101
makefile:^?makefile^A,1
SOURCECU 4,75
@@ -36665,17 +36665,17 @@
PetscErrorCode MatFactorNumeric_MKL_PARDISO(529,22153
PetscErrorCode MatSetFromOptions_MKL_PARDISO(557,23786
PetscErrorCode MatFactorMKL_PARDISOInitialize_Private(654,29175
-PetscErrorCode MatFactorSymbolic_AIJMKL_PARDISO_Private(717,32100
-PetscErrorCode MatLUFactorSymbolic_AIJMKL_PARDISO(753,34054
-PetscErrorCode MatGetInertia_MKL_PARDISO(761,34309
-PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_PARDISO(773,34722
-PetscErrorCode MatView_MKL_PARDISO(785,35068
-PetscErrorCode MatGetInfo_MKL_PARDISO(813,36571
-PetscErrorCode MatMkl_PardisoSetCntl_MKL_PARDISO(831,37138
-PetscErrorCode MatMkl_PardisoSetCntl(882,38749
-static PetscErrorCode MatFactorGetSolverType_mkl_pardiso(931,41229
-PETSC_EXTERN PetscErrorCode MatGetFactor_aij_mkl_pardiso(938,41399
-PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_MKL_Pardiso(1006,44668
+PetscErrorCode MatFactorSymbolic_AIJMKL_PARDISO_Private(717,32101
+PetscErrorCode MatLUFactorSymbolic_AIJMKL_PARDISO(753,34055
+PetscErrorCode MatGetInertia_MKL_PARDISO(761,34310
+PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_PARDISO(773,34723
+PetscErrorCode MatView_MKL_PARDISO(785,35069
+PetscErrorCode MatGetInfo_MKL_PARDISO(813,36572
+PetscErrorCode MatMkl_PardisoSetCntl_MKL_PARDISO(831,37139
+PetscErrorCode MatMkl_PardisoSetCntl(882,38750
+static PetscErrorCode MatFactorGetSolverType_mkl_pardiso(931,41230
+PETSC_EXTERN PetscErrorCode MatGetFactor_aij_mkl_pardiso(938,41400
+PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_MKL_Pardiso(1006,44669
src/mat/impls/aij/seq/mkl_pardiso/mkl_utils.c,52
mkl_utils.c:^?mkl_utils.c^A,1
@@ -36838,20 +36838,20 @@
typedef Kokkos::TeamPolicy<>::member_type team_member;1348,54271
static PetscErrorCode MatLUFactorNumeric_SeqAIJKOKKOSDEVICE(1353,54509
#define KOKKOS_SHARED_LEVEL 1375,55976
-static PetscErrorCode MatLUFactorSymbolic_SeqAIJKokkos(1574,67539
-static PetscErrorCode MatSeqAIJKokkosSymbolicSolveCheck(1582,67836
-static PetscErrorCode MatSeqAIJKokkosTransposeSolveCheck(1596,68418
-static PetscErrorCode MatSolve_SeqAIJKokkos(1638,71343
-static PetscErrorCode MatSolveTranspose_SeqAIJKokkos(1660,72285
-static PetscErrorCode MatILUFactorNumeric_SeqAIJKokkos(1682,73180
-static PetscErrorCode MatILUFactorSymbolic_SeqAIJKokkos(1714,74524
-static PetscErrorCode MatLUFactorSymbolic_SeqAIJKOKKOSDEVICE(1780,77612
-static PetscErrorCode MatFactorGetSolverType_SeqAIJKokkos(1802,78561
-static PetscErrorCode MatFactorGetSolverType_seqaij_kokkos_device(1809,78727
-PETSC_EXTERN PetscErrorCode MatGetFactor_SeqAIJKokkos_Kokkos(1824,79280
-PETSC_EXTERN PetscErrorCode MatGetFactor_seqaijkokkos_kokkos_device(1850,80512
-PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_KOKKOS(1872,81475
-PETSC_INTERN PetscErrorCode PrintCsrMatrix(1882,82021
+static PetscErrorCode MatLUFactorSymbolic_SeqAIJKokkos(1574,67540
+static PetscErrorCode MatSeqAIJKokkosSymbolicSolveCheck(1582,67837
+static PetscErrorCode MatSeqAIJKokkosTransposeSolveCheck(1596,68419
+static PetscErrorCode MatSolve_SeqAIJKokkos(1638,71344
+static PetscErrorCode MatSolveTranspose_SeqAIJKokkos(1660,72286
+static PetscErrorCode MatILUFactorNumeric_SeqAIJKokkos(1682,73181
+static PetscErrorCode MatILUFactorSymbolic_SeqAIJKokkos(1714,74525
+static PetscErrorCode MatLUFactorSymbolic_SeqAIJKOKKOSDEVICE(1780,77613
+static PetscErrorCode MatFactorGetSolverType_SeqAIJKokkos(1802,78562
+static PetscErrorCode MatFactorGetSolverType_seqaij_kokkos_device(1809,78728
+PETSC_EXTERN PetscErrorCode MatGetFactor_SeqAIJKokkos_Kokkos(1824,79281
+PETSC_EXTERN PetscErrorCode MatGetFactor_seqaijkokkos_kokkos_device(1850,80513
+PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_KOKKOS(1872,81476
+PETSC_INTERN PetscErrorCode PrintCsrMatrix(1882,82022
src/mat/impls/aij/seq/kokkos/makefile,122
makefile:^?makefile^A,1
@@ -37026,16 +37026,6 @@
PETSC_EXTERN void matcreateseqaij_(12,401
PETSC_EXTERN void matseqaijsetpreallocation_(18,653
-src/mat/impls/aij/seq/essl/makefile,103
-makefile:^?makefile^A,1
-SOURCEC 6,126
-SOURCEF 7,144
-SOURCEH 8,155
-LIBBASE 9,166
-DIRS 10,189
-MANSEC 11,200
-LOCDIR 12,215
-
src/mat/impls/aij/seq/essl/essl.c,735
essl.c:^?essl.c^A,1
int n,14,397
@@ -37059,6 +37049,16 @@
PETSC_EXTERN PetscErrorCode MatGetFactor_seqaij_essl(130,3748
PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_Essl(160,4837
+src/mat/impls/aij/seq/essl/makefile,103
+makefile:^?makefile^A,1
+SOURCEC 6,126
+SOURCEF 7,144
+SOURCEH 8,155
+LIBBASE 9,166
+DIRS 10,189
+MANSEC 11,200
+LOCDIR 12,215
+
src/mat/impls/aij/seq/crl/makefile,96
makefile:^?makefile^A,1
SOURCEC 3,40
@@ -37130,33 +37130,33 @@
static PetscErrorCode MatFactorGetSolverType_seqaij_cholmod(53,1523
PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_cholmod(61,1751
+src/mat/impls/aij/seq/bas/spbas.h,634
+spbas.h:^?spbas.h^A,1
+#define SPBAS_COLUMN_NUMBERS 38,1585
+#define SPBAS_DIAGONAL_OFFSETS 39,1620
+#define SPBAS_OFFSET_ARRAY 40,1655
+#define NEGATIVE_DIAGONAL 42,1691
+ PetscInt nrows;45,1741
+ PetscInt ncols;46,1759
+ PetscInt nnz;47,1777
+ PetscInt col_idx_type;48,1793
+ PetscInt *row_nnz;row_nnz50,1819
+ PetscInt *icol0;icol051,1844
+ PetscInt **icols;icols52,1867
+ PetscScalar **values;values53,1890
+ PetscBool block_data;55,1915
+ PetscInt n_alloc_icol;56,1942
+ PetscInt n_alloc_val;57,1971
+ PetscInt *alloc_icol;alloc_icol58,1999
+ PetscScalar *alloc_val;alloc_val59,2026
+} spbas_matrix;60,2052
+
src/mat/impls/aij/seq/bas/spbas_cholesky.h,147
spbas_cholesky.h:^?spbas_cholesky.h^A,1
PetscBool spbas_cholesky_row_alloc(8,246
PetscErrorCode spbas_cholesky_garbage_collect(28,992
PetscErrorCode spbas_incomplete_cholesky(239,9427
-src/mat/impls/aij/seq/bas/spbas.h,634
-spbas.h:^?spbas.h^A,1
-#define SPBAS_COLUMN_NUMBERS 38,1584
-#define SPBAS_DIAGONAL_OFFSETS 39,1619
-#define SPBAS_OFFSET_ARRAY 40,1654
-#define NEGATIVE_DIAGONAL 42,1690
- PetscInt nrows;45,1740
- PetscInt ncols;46,1758
- PetscInt nnz;47,1776
- PetscInt col_idx_type;48,1792
- PetscInt *row_nnz;row_nnz50,1818
- PetscInt *icol0;icol051,1843
- PetscInt **icols;icols52,1866
- PetscScalar **values;values53,1889
- PetscBool block_data;55,1914
- PetscInt n_alloc_icol;56,1941
- PetscInt n_alloc_val;57,1970
- PetscInt *alloc_icol;alloc_icol58,1998
- PetscScalar *alloc_val;alloc_val59,2025
-} spbas_matrix;60,2051
-
src/mat/impls/aij/seq/bas/spbas.c,760
spbas.c:^?spbas.c^A,1
size_t spbas_memory_requirement(29,950
@@ -37350,6 +37350,28 @@
PetscErrorCode MatCreateSeqAIJMKL(1119,48820
PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJMKL(1129,49167
+src/mat/impls/aij/mpi/mpiov.c,1175
+mpiov.c:^?mpiov.c^A,1
+static PetscErrorCode ISAdjustForBlockSize(29,1608
+PetscErrorCode MatIncreaseOverlap_MPIAIJ(66,2862
+PetscErrorCode MatIncreaseOverlap_MPIAIJ_Scalable(77,3319
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Once_Scalable(88,3794
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Receive_Scalable(231,10200
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Send_Scalable(279,12044
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Local_Scalable(401,17339
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Once(491,20660
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Local(851,32150
+static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Receive(958,35376
+PetscErrorCode MatCreateSubMatrix_MPIAIJ_All(1082,39951
+PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(1228,46274
+PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS(1946,71873
+PetscErrorCode MatCreateSubMatrices_MPIAIJ(1964,72595
+PetscErrorCode MatCreateSubMatrices_MPIAIJ_Local(2062,76505
+PetscErrorCode MatSetSeqMats_MPIAIJ(2869,104233
+PetscErrorCode MatGetSeqMats_MPIAIJ(3011,110668
+PetscErrorCode MatCreateSubMatricesMPI_MPIXAIJ(3029,111159
+PetscErrorCode MatCreateSubMatricesMPI_MPIAIJ(3216,121274
+
src/mat/impls/aij/mpi/mpiaij.c,7899
mpiaij.c:^?mpiaij.c^A,1
PetscErrorCode MatGetRowIJ_MPIAIJ(9,256
@@ -37468,68 +37490,46 @@
static PetscErrorCode ExpandJmap_Internal(6332,252852
PetscErrorCode MatSetPreallocationCOO_MPIAIJ(6346,253335
static PetscErrorCode MatSetValuesCOO_MPIAIJ(6665,267937
-PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(6733,271206
-PetscErrorCode MatCreateMPIAIJWithSplitArrays(6859,278328
- Mat *mp;mp6889,279770
- PetscBool *mptmp;mptmp6890,279818
- PetscInt cp;6891,279884
- PetscInt *startsj_s,startsj_s6894,280000
- PetscInt *startsj_s, *startsj_r;startsj_r6894,280000
- PetscScalar *bufa;bufa6895,280038
- Mat P_oth;6896,280059
- Mat Bloc;6899,280131
- PetscBool reusesym;6904,280375
- PetscScalar *coo_v,coo_v6907,280439
- PetscScalar *coo_v, *coo_w;coo_w6907,280439
- PetscInt **own;own6908,280568
- PetscInt **off;off6909,280669
- PetscBool hasoffproc;6910,280771
- PetscSF sf;6911,280869
- PetscMemType mtype;6912,280959
- PetscBool abmerge;6915,281004
- PetscBool P_oth_bind;6916,281025
-} MatMatMPIAIJBACKEND;6917,281049
-PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(6919,281073
-static PetscErrorCode MatSeqAIJCopySubArray(6945,282067
-static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(6971,282782
-#define MAX_NUMBER_INTERMEDIATE 7017,284847
-PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(7018,284881
-PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(7511,308031
-static inline PetscErrorCode MatCollapseRow(7588,311184
-static inline PetscErrorCode MatCollapseRows(7613,311952
-static PetscErrorCode MatFilter_AIJ(7634,312722
-PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(7738,316740
-#undef PetscCall7988,327467
-#define PetscCall(7989,327484
-#undef SETERRQ7998,327782
-#define SETERRQ(7999,327797
- #define matsetvaluesmpiaij_ 8006,328021
- #define matsetvaluesmpiaij_ 8008,328116
-PETSC_EXTERN void matsetvaluesmpiaij_(8011,328178
-#undef PetscCall8129,333509
-#undef SETERRQ8130,333526
-
-src/mat/impls/aij/mpi/mpiov.c,1175
-mpiov.c:^?mpiov.c^A,1
-static PetscErrorCode ISAdjustForBlockSize(29,1608
-PetscErrorCode MatIncreaseOverlap_MPIAIJ(66,2862
-PetscErrorCode MatIncreaseOverlap_MPIAIJ_Scalable(77,3319
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Once_Scalable(88,3794
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Receive_Scalable(231,10199
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Send_Scalable(279,12043
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Local_Scalable(401,17338
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Once(491,20659
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Local(851,32149
-static PetscErrorCode MatIncreaseOverlap_MPIAIJ_Receive(958,35375
-PetscErrorCode MatCreateSubMatrix_MPIAIJ_All(1082,39950
-PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(1228,46273
-PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS(1946,71872
-PetscErrorCode MatCreateSubMatrices_MPIAIJ(1964,72594
-PetscErrorCode MatCreateSubMatrices_MPIAIJ_Local(2062,76504
-PetscErrorCode MatSetSeqMats_MPIAIJ(2869,104232
-PetscErrorCode MatGetSeqMats_MPIAIJ(3011,110667
-PetscErrorCode MatCreateSubMatricesMPI_MPIXAIJ(3029,111158
-PetscErrorCode MatCreateSubMatricesMPI_MPIAIJ(3216,121273
+PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(6733,271205
+PetscErrorCode MatCreateMPIAIJWithSplitArrays(6859,278327
+ Mat *mp;mp6889,279769
+ PetscBool *mptmp;mptmp6890,279817
+ PetscInt cp;6891,279883
+ PetscInt *startsj_s,startsj_s6894,279999
+ PetscInt *startsj_s, *startsj_r;startsj_r6894,279999
+ PetscScalar *bufa;bufa6895,280037
+ Mat P_oth;6896,280058
+ Mat Bloc;6899,280130
+ PetscBool reusesym;6904,280374
+ PetscScalar *coo_v,coo_v6907,280438
+ PetscScalar *coo_v, *coo_w;coo_w6907,280438
+ PetscInt **own;own6908,280567
+ PetscInt **off;off6909,280668
+ PetscBool hasoffproc;6910,280770
+ PetscSF sf;6911,280868
+ PetscMemType mtype;6912,280958
+ PetscBool abmerge;6915,281003
+ PetscBool P_oth_bind;6916,281024
+} MatMatMPIAIJBACKEND;6917,281048
+PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(6919,281072
+static PetscErrorCode MatSeqAIJCopySubArray(6945,282066
+static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(6971,282781
+#define MAX_NUMBER_INTERMEDIATE 7017,284846
+PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(7018,284880
+PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(7511,308032
+static inline PetscErrorCode MatCollapseRow(7588,311185
+static inline PetscErrorCode MatCollapseRows(7613,311953
+static PetscErrorCode MatFilter_AIJ(7634,312723
+PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(7738,316741
+#undef PetscCall7988,327468
+#define PetscCall(7989,327485
+#undef SETERRQ7998,327783
+#define SETERRQ(7999,327798
+ #define matsetvaluesmpiaij_ 8006,328022
+ #define matsetvaluesmpiaij_ 8008,328117
+PETSC_EXTERN void matsetvaluesmpiaij_(8011,328179
+#undef PetscCall8129,333510
+#undef SETERRQ8130,333527
src/mat/impls/aij/mpi/mmaij.c,342
mmaij.c:^?mmaij.c^A,1
@@ -38064,31 +38064,31 @@
PetscErrorCode (*ConvertToTriples)ConvertToTriples182,6841
PetscBool use_petsc_omp_support;185,6966
PetscOmpCtrl omp_ctrl;186,7004
- MPI_Comm petsc_comm,187,7156
- MPI_Comm petsc_comm, omp_comm;187,7156
- PetscInt64 *recvcount;recvcount188,7233
- PetscMPIInt tag,189,7310
- PetscMPIInt tag, omp_comm_size;189,7310
- PetscBool is_omp_master;190,7345
- MPI_Request *reqs;reqs191,7417
-static PetscErrorCode PetscMUMPSIntCSRCast(197,7628
-static PetscErrorCode MatMumpsResetSchur_Private(228,8830
-static PetscErrorCode MatMumpsSolveSchur_Private(241,9240
-static PetscErrorCode MatMumpsHandleSchur_Private(302,11697
-PetscErrorCode MatConvertToTriples_seqaij_seqaij(356,14145
-PetscErrorCode MatConvertToTriples_seqsell_seqaij(389,15103
-PetscErrorCode MatConvertToTriples_seqbaij_seqaij(411,15872
-PetscErrorCode MatConvertToTriples_seqsbaij_seqsbaij(448,16929
-PetscErrorCode MatConvertToTriples_seqaij_seqsbaij(522,19267
-PetscErrorCode MatConvertToTriples_mpisbaij_mpisbaij(631,22585
-PetscErrorCode MatConvertToTriples_mpiaij_mpiaij(738,25983
-PetscErrorCode MatConvertToTriples_mpibaij_mpiaij(809,28024
-PetscErrorCode MatConvertToTriples_mpiaij_mpisbaij(879,30168
-PetscErrorCode MatDestroy_MUMPS(971,33010
-static PetscErrorCode MatMumpsSetUpDistRHSInfo(1029,36129
-PetscErrorCode MatSolve_MUMPS(1126,40597
-PetscErrorCode MatSolveTranspose_MUMPS(1226,45814
-PetscErrorCode MatMatSolve_MUMPS(1237,46061
+ MPI_Comm petsc_comm,187,7157
+ MPI_Comm petsc_comm, omp_comm;187,7157
+ PetscInt64 *recvcount;recvcount188,7234
+ PetscMPIInt tag,189,7311
+ PetscMPIInt tag, omp_comm_size;189,7311
+ PetscBool is_omp_master;190,7346
+ MPI_Request *reqs;reqs191,7418
+static PetscErrorCode PetscMUMPSIntCSRCast(197,7629
+static PetscErrorCode MatMumpsResetSchur_Private(228,8831
+static PetscErrorCode MatMumpsSolveSchur_Private(241,9241
+static PetscErrorCode MatMumpsHandleSchur_Private(302,11698
+PetscErrorCode MatConvertToTriples_seqaij_seqaij(356,14146
+PetscErrorCode MatConvertToTriples_seqsell_seqaij(389,15104
+PetscErrorCode MatConvertToTriples_seqbaij_seqaij(411,15873
+PetscErrorCode MatConvertToTriples_seqsbaij_seqsbaij(448,16930
+PetscErrorCode MatConvertToTriples_seqaij_seqsbaij(522,19268
+PetscErrorCode MatConvertToTriples_mpisbaij_mpisbaij(631,22586
+PetscErrorCode MatConvertToTriples_mpiaij_mpiaij(738,25984
+PetscErrorCode MatConvertToTriples_mpibaij_mpiaij(809,28025
+PetscErrorCode MatConvertToTriples_mpiaij_mpisbaij(879,30169
+PetscErrorCode MatDestroy_MUMPS(971,33011
+static PetscErrorCode MatMumpsSetUpDistRHSInfo(1029,36130
+PetscErrorCode MatSolve_MUMPS(1126,40598
+PetscErrorCode MatSolveTranspose_MUMPS(1226,45815
+PetscErrorCode MatMatSolve_MUMPS(1237,46062
PetscErrorCode MatMatSolveTranspose_MUMPS(1482,57317
PetscErrorCode MatMatTransposeSolve_MUMPS(1494,57630
PetscErrorCode MatGetInertia_SBAIJMUMPS(1520,58368
@@ -38298,15 +38298,15 @@
PetscErrorCode MatFactorNumeric_MKL_CPARDISO(450,14119
PetscErrorCode MatSetFromOptions_MKL_CPARDISO(469,15411
PetscErrorCode PetscInitialize_MKL_CPARDISO(553,20479
-PetscErrorCode MatLUFactorSymbolic_AIJMKL_CPARDISO(624,23076
-PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_CPARDISO(655,24783
-PetscErrorCode MatView_MKL_CPARDISO(689,26786
-PetscErrorCode MatGetInfo_MKL_CPARDISO(718,28355
-PetscErrorCode MatMkl_CPardisoSetCntl_MKL_CPARDISO(735,28870
-PetscErrorCode MatMkl_CPardisoSetCntl(776,30186
-static PetscErrorCode MatFactorGetSolverType_mkl_cpardiso(827,32763
-static PetscErrorCode MatGetFactor_mpiaij_mkl_cpardiso(835,32975
-PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_MKL_CPardiso(883,35070
+PetscErrorCode MatLUFactorSymbolic_AIJMKL_CPARDISO(624,23077
+PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_CPARDISO(655,24784
+PetscErrorCode MatView_MKL_CPARDISO(689,26787
+PetscErrorCode MatGetInfo_MKL_CPARDISO(718,28356
+PetscErrorCode MatMkl_CPardisoSetCntl_MKL_CPARDISO(735,28871
+PetscErrorCode MatMkl_CPardisoSetCntl(776,30187
+static PetscErrorCode MatFactorGetSolverType_mkl_cpardiso(827,32764
+static PetscErrorCode MatGetFactor_mpiaij_mkl_cpardiso(835,32976
+PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_MKL_CPardiso(883,35071
src/mat/impls/aij/mpi/mkl_cpardiso/makefile,115
makefile:^?makefile^A,1
@@ -38375,8 +38375,8 @@
PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(1397,70716
PetscErrorCode MatCreateAIJKokkos(1452,73194
PetscErrorCode MatKokkosGetDeviceMatWrite(1471,73897
-PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(1581,79412
-PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(1593,79852
+PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(1581,79413
+PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(1593,79853
src/mat/impls/aij/mpi/kokkos/makefile,122
makefile:^?makefile^A,1
@@ -39430,9 +39430,9 @@
#define MIS_REMOVED 8,225
#define MIS_IS_SELECTED(9,255
PetscErrorCode MatCoarsenApply_MIS_private(24,971
-static PetscErrorCode MatCoarsenApply_MIS(251,10576
-PetscErrorCode MatCoarsenView_MIS(272,11205
-PETSC_EXTERN PetscErrorCode MatCoarsenCreate_MIS(316,12739
+static PetscErrorCode MatCoarsenApply_MIS(251,10577
+PetscErrorCode MatCoarsenView_MIS(272,11206
+PETSC_EXTERN PetscErrorCode MatCoarsenCreate_MIS(316,12740
src/mat/coarsen/impls/mis/makefile,86
makefile:^?makefile^A,1
@@ -39446,39 +39446,39 @@
src/mat/coarsen/impls/hem/hem.c,1370
hem.c:^?hem.c^A,1
PetscErrorCode PetscCDCreate(10,193
-PetscErrorCode PetscCDDestroy(31,689
-PetscErrorCode PetscCDSetChuckSize(52,1212
-PetscErrorCode PetscCDGetNewNode(61,1386
-PetscErrorCode PetscCDIntNdSetID(97,2638
-PetscErrorCode PetscCDIntNdGetID(106,2808
-PetscErrorCode PetscCDGetHeadPos(115,2988
-PetscErrorCode PetscCDGetNextPos(125,3313
-PetscErrorCode PetscCDAppendID(135,3589
-PetscErrorCode PetscCDAppendNode(159,4292
-PetscErrorCode PetscCDRemoveNextNode(182,4958
-PetscErrorCode PetscCDPrint(198,5600
-PetscErrorCode PetscCDAppendRemove(220,6199
-PetscErrorCode PetscCDRemoveAll(245,7017
-PetscErrorCode PetscCDSizeAt(263,7497
-PetscErrorCode PetscCDEmptyAt(281,7909
-PetscErrorCode PetscCDGetMIS(291,8260
-PetscErrorCode PetscCDGetMat(313,8785
-PetscErrorCode PetscCDSetMat(323,8979
-PetscErrorCode PetscCDGetASMBlocks(335,9263
-typedef struct edge_tag 390,11201
- PetscReal weight;391,11227
- PetscInt lid0,392,11247
- PetscInt lid0, gid1,392,11247
- PetscInt lid0, gid1, cpid1;392,11247
-} Edge;393,11278
-static int gamg_hem_compare(395,11287
-static PetscErrorCode MatCoarsenApply_HEM_private(412,11798
-#define REQ_BF_SIZE 720,24922
-#define CHUNCK_SIZE 737,25568
-#define BF_SZ 777,27347
-static PetscErrorCode MatCoarsenApply_HEM(1056,39468
-static PetscErrorCode MatCoarsenView_HEM(1075,40005
-PETSC_EXTERN PetscErrorCode MatCoarsenCreate_HEM(1100,40819
+PetscErrorCode PetscCDDestroy(31,690
+PetscErrorCode PetscCDSetChuckSize(52,1213
+PetscErrorCode PetscCDGetNewNode(61,1387
+PetscErrorCode PetscCDIntNdSetID(97,2639
+PetscErrorCode PetscCDIntNdGetID(106,2809
+PetscErrorCode PetscCDGetHeadPos(115,2989
+PetscErrorCode PetscCDGetNextPos(125,3314
+PetscErrorCode PetscCDAppendID(135,3590
+PetscErrorCode PetscCDAppendNode(159,4293
+PetscErrorCode PetscCDRemoveNextNode(182,4959
+PetscErrorCode PetscCDPrint(198,5601
+PetscErrorCode PetscCDAppendRemove(220,6200
+PetscErrorCode PetscCDRemoveAll(245,7018
+PetscErrorCode PetscCDSizeAt(263,7498
+PetscErrorCode PetscCDEmptyAt(281,7910
+PetscErrorCode PetscCDGetMIS(291,8261
+PetscErrorCode PetscCDGetMat(313,8786
+PetscErrorCode PetscCDSetMat(323,8980
+PetscErrorCode PetscCDGetASMBlocks(335,9264
+typedef struct edge_tag 390,11202
+ PetscReal weight;391,11228
+ PetscInt lid0,392,11248
+ PetscInt lid0, gid1,392,11248
+ PetscInt lid0, gid1, cpid1;392,11248
+} Edge;393,11279
+static int gamg_hem_compare(395,11288
+static PetscErrorCode MatCoarsenApply_HEM_private(412,11799
+#define REQ_BF_SIZE 720,24923
+#define CHUNCK_SIZE 737,25569
+#define BF_SZ 777,27349
+static PetscErrorCode MatCoarsenApply_HEM(1056,39470
+static PetscErrorCode MatCoarsenView_HEM(1075,40007
+PETSC_EXTERN PetscErrorCode MatCoarsenCreate_HEM(1100,40821
src/mat/coarsen/impls/hem/makefile,86
makefile:^?makefile^A,1
@@ -39537,6 +39537,13 @@
static char help[help1,0
int main(20,796
+src/ksp/pc/tests/ex6.c,125
+ex6.c:^?ex6.c^A,1
+static char help[help2,1
+PetscErrorCode FormElementStiffness(8,274
+PetscErrorCode FormElementRhs(28,696
+int main(37,851
+
src/ksp/pc/tests/makefile,26
makefile:^?makefile^A,1
LOCDIR 3,34
@@ -39556,13 +39563,6 @@
static char help[help2,1
int main(7,136
-src/ksp/pc/tests/ex6.c,125
-ex6.c:^?ex6.c^A,1
-static char help[help2,1
-PetscErrorCode FormElementStiffness(8,274
-PetscErrorCode FormElementRhs(28,696
-int main(37,851
-
src/ksp/pc/tests/ex5.c,463
ex5.c:^?ex5.c^A,1
static char help[help2,1
@@ -39756,19 +39756,19 @@
static PetscErrorCode PCMPISetMat(133,5282
static PetscErrorCode PCMPIUpdateMatValues(248,10329
static PetscErrorCode PCMPISolve(299,12794
-static PetscErrorCode PCMPIDestroy(348,14535
-PetscErrorCode PCMPIServerBegin(385,16008
-PetscErrorCode PCMPIServerEnd(454,17940
-static PetscErrorCode PCSetUp_Seq(499,20242
-static PetscErrorCode PCApply_Seq(519,20955
-static PetscErrorCode PCView_Seq(536,21397
-static PetscErrorCode PCDestroy_Seq(551,22250
-static PetscErrorCode PCSetUp_MPI(565,22597
-static PetscErrorCode PCApply_MPI(615,24337
-PetscErrorCode PCDestroy_MPI(625,24589
-PetscErrorCode PCView_MPI(639,24972
-PetscErrorCode PCSetFromOptions_MPI(658,25960
-PETSC_EXTERN PetscErrorCode PCCreate_MPI(700,28698
+static PetscErrorCode PCMPIDestroy(348,14536
+PetscErrorCode PCMPIServerBegin(385,16009
+PetscErrorCode PCMPIServerEnd(454,17941
+static PetscErrorCode PCSetUp_Seq(499,20243
+static PetscErrorCode PCApply_Seq(519,20956
+static PetscErrorCode PCView_Seq(536,21398
+static PetscErrorCode PCDestroy_Seq(551,22251
+static PetscErrorCode PCSetUp_MPI(565,22598
+static PetscErrorCode PCApply_MPI(615,24338
+PetscErrorCode PCDestroy_MPI(625,24590
+PetscErrorCode PCView_MPI(639,24973
+PetscErrorCode PCSetFromOptions_MPI(658,25961
+PETSC_EXTERN PetscErrorCode PCCreate_MPI(700,28699
src/ksp/pc/impls/mpi/makefile,114
makefile:^?makefile^A,1
@@ -39938,20 +39938,20 @@
SUBMANSEC 9,130
LOCDIR 10,145
-src/ksp/pc/impls/vpbjacobi/vpbjacobi.h,112
-vpbjacobi.h:^?vpbjacobi.h^A,1
-#define VPBJACOBI_H2,20
- MatScalar *diag;diag10,169
- void *spptr;spptr11,203
-} PC_VPBJacobi;12,248
-
src/ksp/pc/impls/vpbjacobi/vpbjacobi.c,272
vpbjacobi.c:^?vpbjacobi.c^A,1
static PetscErrorCode PCApply_VPBJacobi(3,54
PETSC_INTERN PetscErrorCode PCSetUp_VPBJacobi_Host(105,4870
static PetscErrorCode PCSetUp_VPBJacobi(129,5791
PETSC_INTERN PetscErrorCode PCDestroy_VPBJacobi(157,6607
-PETSC_EXTERN PetscErrorCode PCCreate_VPBJacobi(197,8041
+PETSC_EXTERN PetscErrorCode PCCreate_VPBJacobi(197,8042
+
+src/ksp/pc/impls/vpbjacobi/vpbjacobi.h,112
+vpbjacobi.h:^?vpbjacobi.h^A,1
+#define VPBJACOBI_H2,20
+ MatScalar *diag;diag10,169
+ void *spptr;spptr11,203
+} PC_VPBJacobi;12,248
src/ksp/pc/impls/vpbjacobi/makefile,114
makefile:^?makefile^A,1
@@ -40439,6 +40439,49 @@
PetscErrorCode PCTFS_set_bit_mask(107,2741
PetscInt PCTFS_len_buf(133,3373
+src/ksp/pc/impls/telescope/telescope.c,2334
+telescope.c:^?telescope.c^A,1
+static PetscBool cited 8,245
+static const char citation[citation9,289
+PetscErrorCode PCTelescopeTestValidSubcomm(51,2324
+DM private_PCTelescopeGetSubDM(105,4441
+PetscErrorCode PCTelescopeSetUp_default(130,4958
+PetscErrorCode PCTelescopeMatCreate_default(190,6786
+static PetscErrorCode PCTelescopeSubNullSpaceCreate_Telescope(228,8090
+static PetscErrorCode PCTelescopeMatNullSpaceCreate_default(276,10107
+static PetscErrorCode PCView_Telescope(311,11390
+static PetscErrorCode PCSetUp_Telescope(415,16261
+static PetscErrorCode PCApply_Telescope(565,22677
+static PetscErrorCode PCApplyRichardson_Telescope(616,24412
+static PetscErrorCode PCReset_Telescope(665,26301
+static PetscErrorCode PCDestroy_Telescope(681,26800
+static PetscErrorCode PCSetFromOptions_Telescope(706,28298
+static PetscErrorCode PCTelescopeGetKSP_Telescope(731,29975
+static PetscErrorCode PCTelescopeGetSubcommType_Telescope(739,30168
+static PetscErrorCode PCTelescopeSetSubcommType_Telescope(747,30414
+static PetscErrorCode PCTelescopeGetReductionFactor_Telescope(757,30822
+static PetscErrorCode PCTelescopeSetReductionFactor_Telescope(765,31041
+static PetscErrorCode PCTelescopeGetIgnoreDM_Telescope(778,31666
+static PetscErrorCode PCTelescopeSetIgnoreDM_Telescope(786,31870
+static PetscErrorCode PCTelescopeGetUseCoarseDM_Telescope(794,32065
+static PetscErrorCode PCTelescopeSetUseCoarseDM_Telescope(802,32276
+static PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators_Telescope(810,32478
+static PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators_Telescope(818,32716
+static PetscErrorCode PCTelescopeGetDM_Telescope(826,32945
+PetscErrorCode PCTelescopeGetKSP(849,33419
+PetscErrorCode PCTelescopeGetReductionFactor(871,33918
+PetscErrorCode PCTelescopeSetReductionFactor(893,34447
+PetscErrorCode PCTelescopeGetIgnoreDM(915,34935
+PetscErrorCode PCTelescopeSetIgnoreDM(937,35408
+PetscErrorCode PCTelescopeGetUseCoarseDM(959,35940
+PetscErrorCode PCTelescopeSetUseCoarseDM(1079,41342
+PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators(1101,41905
+PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators(1123,42563
+PetscErrorCode PCTelescopeGetDM(1145,43138
+PetscErrorCode PCTelescopeSetSubcommType(1165,43623
+PetscErrorCode PCTelescopeGetSubcommType(1187,44180
+PETSC_EXTERN PetscErrorCode PCCreate_Telescope(1333,54413
+
src/ksp/pc/impls/telescope/telescope_dmda.c,1227
telescope_dmda.c:^?telescope_dmda.c^A,1
static PetscBool cited 11,246
@@ -40531,49 +40574,6 @@
static inline PetscBool PetscSubcomm_isActiveRank(43,1208
static inline PetscBool PCTelescope_isActiveRank(49,1358
-src/ksp/pc/impls/telescope/telescope.c,2334
-telescope.c:^?telescope.c^A,1
-static PetscBool cited 8,245
-static const char citation[citation9,289
-PetscErrorCode PCTelescopeTestValidSubcomm(51,2324
-DM private_PCTelescopeGetSubDM(105,4441
-PetscErrorCode PCTelescopeSetUp_default(130,4958
-PetscErrorCode PCTelescopeMatCreate_default(190,6786
-static PetscErrorCode PCTelescopeSubNullSpaceCreate_Telescope(228,8090
-static PetscErrorCode PCTelescopeMatNullSpaceCreate_default(276,10107
-static PetscErrorCode PCView_Telescope(311,11390
-static PetscErrorCode PCSetUp_Telescope(415,16261
-static PetscErrorCode PCApply_Telescope(565,22677
-static PetscErrorCode PCApplyRichardson_Telescope(616,24412
-static PetscErrorCode PCReset_Telescope(665,26301
-static PetscErrorCode PCDestroy_Telescope(681,26800
-static PetscErrorCode PCSetFromOptions_Telescope(706,28298
-static PetscErrorCode PCTelescopeGetKSP_Telescope(731,29975
-static PetscErrorCode PCTelescopeGetSubcommType_Telescope(739,30168
-static PetscErrorCode PCTelescopeSetSubcommType_Telescope(747,30414
-static PetscErrorCode PCTelescopeGetReductionFactor_Telescope(757,30822
-static PetscErrorCode PCTelescopeSetReductionFactor_Telescope(765,31041
-static PetscErrorCode PCTelescopeGetIgnoreDM_Telescope(778,31666
-static PetscErrorCode PCTelescopeSetIgnoreDM_Telescope(786,31870
-static PetscErrorCode PCTelescopeGetUseCoarseDM_Telescope(794,32065
-static PetscErrorCode PCTelescopeSetUseCoarseDM_Telescope(802,32276
-static PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators_Telescope(810,32478
-static PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators_Telescope(818,32716
-static PetscErrorCode PCTelescopeGetDM_Telescope(826,32945
-PetscErrorCode PCTelescopeGetKSP(849,33419
-PetscErrorCode PCTelescopeGetReductionFactor(871,33918
-PetscErrorCode PCTelescopeSetReductionFactor(893,34447
-PetscErrorCode PCTelescopeGetIgnoreDM(915,34935
-PetscErrorCode PCTelescopeSetIgnoreDM(937,35408
-PetscErrorCode PCTelescopeGetUseCoarseDM(959,35940
-PetscErrorCode PCTelescopeSetUseCoarseDM(1079,41342
-PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators(1101,41905
-PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators(1123,42563
-PetscErrorCode PCTelescopeGetDM(1145,43138
-PetscErrorCode PCTelescopeSetSubcommType(1165,43623
-PetscErrorCode PCTelescopeGetSubcommType(1187,44180
-PETSC_EXTERN PetscErrorCode PCCreate_Telescope(1333,54413
-
src/ksp/pc/impls/telescope/makefile,116
makefile:^?makefile^A,1
SOURCEC 3,37
@@ -40721,7 +40721,7 @@
PetscErrorCode PCSORSetSymmetric(315,11516
PetscErrorCode PCSORSetOmega(344,12340
PetscErrorCode PCSORSetIterations(375,13296
-PETSC_EXTERN PetscErrorCode PCCreate_SOR(426,15796
+PETSC_EXTERN PetscErrorCode PCCreate_SOR(426,15797
src/ksp/pc/impls/sor/makefile,114
makefile:^?makefile^A,1
@@ -40985,7 +40985,7 @@
static PetscErrorCode PCDestroy_Redistribute(285,11501
static PetscErrorCode PCSetFromOptions_Redistribute(302,11988
PetscErrorCode PCRedistributeGetKSP(326,12498
-PETSC_EXTERN PetscErrorCode PCCreate_Redistribute(359,13879
+PETSC_EXTERN PetscErrorCode PCCreate_Redistribute(360,14000
src/ksp/pc/impls/redistribute/makefile,114
makefile:^?makefile^A,1
@@ -41045,7 +41045,7 @@
static PetscErrorCode PCSetUp_PBJacobi(259,9117
static PetscErrorCode PCDestroy_PBJacobi(304,10191
static PetscErrorCode PCView_PBJacobi(314,10402
-PETSC_EXTERN PetscErrorCode PCCreate_PBJacobi(350,11839
+PETSC_EXTERN PetscErrorCode PCCreate_PBJacobi(350,11840
src/ksp/pc/impls/pbjacobi/makefile,114
makefile:^?makefile^A,1
@@ -41286,7 +41286,7 @@
PetscErrorCode PCSetUp_ML(503,18760
PetscErrorCode PCDestroy_ML(947,39012
PetscErrorCode PCSetFromOptions_ML(960,39354
-PETSC_EXTERN PetscErrorCode PCCreate_ML(1108,49904
+PETSC_EXTERN PetscErrorCode PCCreate_ML(1108,49903
src/ksp/pc/impls/ml/makefile,119
makefile:^?makefile^A,1
@@ -41543,7 +41543,7 @@
static PetscErrorCode PCKSPGetKSP_KSP(183,5131
PetscErrorCode PCKSPGetKSP(211,5705
static PetscErrorCode PCSetFromOptions_KSP(220,5941
-PETSC_EXTERN PetscErrorCode PCCreate_KSP(261,8412
+PETSC_EXTERN PetscErrorCode PCCreate_KSP(261,8411
src/ksp/pc/impls/ksp/makefile,114
makefile:^?makefile^A,1
@@ -41631,11 +41631,11 @@
static PetscErrorCode PCISSetSubdomainScalingFactor_IS(90,2725
PetscErrorCode PCISSetSubdomainScalingFactor(119,3383
PetscErrorCode PCISSetUp(127,3641
-PetscErrorCode PCISDestroy(401,17215
-PetscErrorCode PCISCreate(447,19097
-PetscErrorCode PCISApplySchur(480,20248
-PetscErrorCode PCISScatterArrayNToVecB(513,21493
-PetscErrorCode PCISApplyInvSchur(560,23321
+PetscErrorCode PCISDestroy(401,17216
+PetscErrorCode PCISCreate(447,19098
+PetscErrorCode PCISApplySchur(480,20249
+PetscErrorCode PCISScatterArrayNToVecB(513,21494
+PetscErrorCode PCISApplyInvSchur(560,23322
src/ksp/pc/impls/is/makefile,99
makefile:^?makefile^A,1
@@ -42153,10 +42153,10 @@
PetscErrorCode PCGASMDestroySubdomains(1523,66457
#define PCGASMLocalSubdomainBounds2D(1548,67042
PetscErrorCode PCGASMCreateSubdomains2D(1600,69867
-PetscErrorCode PCGASMGetSubdomains(1775,77910
-PetscErrorCode PCGASMGetSubmatrices(1820,79347
-PetscErrorCode PCGASMSetUseDMSubdomains(1860,80931
-PetscErrorCode PCGASMGetUseDMSubdomains(1892,81973
+PetscErrorCode PCGASMGetSubdomains(1775,77912
+PetscErrorCode PCGASMGetSubmatrices(1820,79349
+PetscErrorCode PCGASMSetUseDMSubdomains(1860,80933
+PetscErrorCode PCGASMGetUseDMSubdomains(1892,81975
src/ksp/pc/impls/gasm/makefile,114
makefile:^?makefile^A,1
@@ -42198,48 +42198,48 @@
static PetscBool PCGAMGPackageInitialized;25,655
PetscErrorCode PCReset_GAMG(27,707
static PetscErrorCode PCGAMGCreateLevel_GAMG(60,1746
-PetscErrorCode PCGAMGSquareGraph_GAMG(466,21955
-PetscErrorCode PCSetUp_GAMG(504,23583
-PetscErrorCode PCDestroy_GAMG(832,38128
-PetscErrorCode PCGAMGSetProcEqLim(883,40667
-static PetscErrorCode PCGAMGSetProcEqLim_GAMG(891,40891
-PetscErrorCode PCGAMGSetCoarseEqLim(921,41688
-static PetscErrorCode PCGAMGSetCoarseEqLim_GAMG(929,41916
-PetscErrorCode PCGAMGSetRepartition(958,42716
-static PetscErrorCode PCGAMGSetRepartition_GAMG(966,42946
-PetscErrorCode PCGAMGSetUseSAEstEig(999,44228
-static PetscErrorCode PCGAMGSetUseSAEstEig_GAMG(1007,44458
-PetscErrorCode PCGAMGSetEigenvalues(1034,45041
-static PetscErrorCode PCGAMGSetEigenvalues_GAMG(1042,45310
-PetscErrorCode PCGAMGSetReuseInterpolation(1075,46501
-static PetscErrorCode PCGAMGSetReuseInterpolation_GAMG(1083,46745
-PetscErrorCode PCGAMGASMSetUseAggs(1110,47518
-static PetscErrorCode PCGAMGASMSetUseAggs_GAMG(1118,47750
-PetscErrorCode PCGAMGSetUseParallelCoarseGridSolve(1144,48440
-static PetscErrorCode PCGAMGSetUseParallelCoarseGridSolve_GAMG(1152,48704
-PetscErrorCode PCGAMGSetCpuPinCoarseGrids(1178,49488
-static PetscErrorCode PCGAMGSetCpuPinCoarseGrids_GAMG(1186,49734
-PetscErrorCode PCGAMGSetCoarseGridLayoutType(1212,50557
-static PetscErrorCode PCGAMGSetCoarseGridLayoutType_GAMG(1220,50823
-PetscErrorCode PCGAMGSetNlevels(1249,51516
-static PetscErrorCode PCGAMGSetNlevels_GAMG(1257,51736
-PetscErrorCode PCGAMGSetThreshold(1292,53531
-static PetscErrorCode PCGAMGSetThreshold_GAMG(1301,53824
-PetscErrorCode PCGAMGSetRankReductionFactors(1329,54782
-static PetscErrorCode PCGAMGSetRankReductionFactors_GAMG(1338,55094
-PetscErrorCode PCGAMGSetThresholdScale(1369,56201
-static PetscErrorCode PCGAMGSetThresholdScale_GAMG(1377,56437
-PetscErrorCode PCGAMGSetType(1402,57061
-PetscErrorCode PCGAMGGetType(1425,57564
-static PetscErrorCode PCGAMGGetType_GAMG(1433,57791
-static PetscErrorCode PCGAMGSetType_GAMG(1443,58022
-static PetscErrorCode PCView_GAMG(1471,59067
-PetscErrorCode PCSetFromOptions_GAMG(1491,60404
-PETSC_EXTERN PetscErrorCode PCCreate_GAMG(1590,68050
-PetscErrorCode PCGAMGInitializePackage(1669,72084
-PetscErrorCode PCGAMGFinalizePackage(1726,75270
-PetscErrorCode PCGAMGRegister(1745,75736
-PetscErrorCode PCGAMGCreateGraph(1767,76264
+PetscErrorCode PCGAMGSquareGraph_GAMG(466,21956
+PetscErrorCode PCSetUp_GAMG(504,23584
+PetscErrorCode PCDestroy_GAMG(832,38129
+PetscErrorCode PCGAMGSetProcEqLim(883,40668
+static PetscErrorCode PCGAMGSetProcEqLim_GAMG(891,40892
+PetscErrorCode PCGAMGSetCoarseEqLim(921,41689
+static PetscErrorCode PCGAMGSetCoarseEqLim_GAMG(929,41917
+PetscErrorCode PCGAMGSetRepartition(958,42717
+static PetscErrorCode PCGAMGSetRepartition_GAMG(966,42947
+PetscErrorCode PCGAMGSetUseSAEstEig(999,44229
+static PetscErrorCode PCGAMGSetUseSAEstEig_GAMG(1007,44459
+PetscErrorCode PCGAMGSetEigenvalues(1034,45042
+static PetscErrorCode PCGAMGSetEigenvalues_GAMG(1042,45311
+PetscErrorCode PCGAMGSetReuseInterpolation(1075,46502
+static PetscErrorCode PCGAMGSetReuseInterpolation_GAMG(1083,46746
+PetscErrorCode PCGAMGASMSetUseAggs(1110,47519
+static PetscErrorCode PCGAMGASMSetUseAggs_GAMG(1118,47751
+PetscErrorCode PCGAMGSetUseParallelCoarseGridSolve(1144,48441
+static PetscErrorCode PCGAMGSetUseParallelCoarseGridSolve_GAMG(1152,48705
+PetscErrorCode PCGAMGSetCpuPinCoarseGrids(1178,49489
+static PetscErrorCode PCGAMGSetCpuPinCoarseGrids_GAMG(1186,49735
+PetscErrorCode PCGAMGSetCoarseGridLayoutType(1212,50558
+static PetscErrorCode PCGAMGSetCoarseGridLayoutType_GAMG(1220,50824
+PetscErrorCode PCGAMGSetNlevels(1249,51517
+static PetscErrorCode PCGAMGSetNlevels_GAMG(1257,51737
+PetscErrorCode PCGAMGSetThreshold(1292,53532
+static PetscErrorCode PCGAMGSetThreshold_GAMG(1301,53825
+PetscErrorCode PCGAMGSetRankReductionFactors(1329,54783
+static PetscErrorCode PCGAMGSetRankReductionFactors_GAMG(1338,55095
+PetscErrorCode PCGAMGSetThresholdScale(1369,56202
+static PetscErrorCode PCGAMGSetThresholdScale_GAMG(1377,56438
+PetscErrorCode PCGAMGSetType(1402,57062
+PetscErrorCode PCGAMGGetType(1425,57565
+static PetscErrorCode PCGAMGGetType_GAMG(1433,57792
+static PetscErrorCode PCGAMGSetType_GAMG(1443,58023
+static PetscErrorCode PCView_GAMG(1471,59069
+PetscErrorCode PCSetFromOptions_GAMG(1491,60406
+PETSC_EXTERN PetscErrorCode PCCreate_GAMG(1590,68047
+PetscErrorCode PCGAMGInitializePackage(1669,72081
+PetscErrorCode PCGAMGFinalizePackage(1726,75267
+PetscErrorCode PCGAMGRegister(1745,75733
+PetscErrorCode PCGAMGCreateGraph(1767,76261
src/ksp/pc/impls/gamg/classical.c,1206
classical.c:^?classical.c^A,1
@@ -42491,36 +42491,36 @@
PetscErrorCode PCFieldSplitSetBlockSize(2165,104117
PetscErrorCode PCFieldSplitGetSubKSP(2213,105909
PetscErrorCode PCFieldSplitSchurGetSubKSP(2263,107917
-PetscErrorCode PCFieldSplitSetSchurPre(2315,111087
-PetscErrorCode PCFieldSplitSchurPrecondition(2323,111380
-PetscErrorCode PCFieldSplitGetSchurPre(2346,112331
-PetscErrorCode PCFieldSplitSchurGetS(2373,113402
-PetscErrorCode PCFieldSplitSchurRestoreS(2403,114484
-static PetscErrorCode PCFieldSplitSetSchurPre_FieldSplit(2420,115243
-static PetscErrorCode PCFieldSplitGetSchurPre_FieldSplit(2434,115674
-PetscErrorCode PCFieldSplitSetSchurFactType(2488,118353
-static PetscErrorCode PCFieldSplitSetSchurFactType_FieldSplit(2496,118639
-PetscErrorCode PCFieldSplitSetSchurScale(2521,119394
-static PetscErrorCode PCFieldSplitSetSchurScale_FieldSplit(2530,119697
-PetscErrorCode PCFieldSplitGetSchurBlocks(2557,120348
-PetscErrorCode PCFieldSplitSetGKBTol(2595,121861
-static PetscErrorCode PCFieldSplitSetGKBTol_FieldSplit(2604,122162
-PetscErrorCode PCFieldSplitSetGKBMaxit(2629,122897
-static PetscErrorCode PCFieldSplitSetGKBMaxit_FieldSplit(2638,123187
-PetscErrorCode PCFieldSplitSetGKBDelay(2672,124559
-static PetscErrorCode PCFieldSplitSetGKBDelay_FieldSplit(2681,124849
-PetscErrorCode PCFieldSplitSetGKBNu(2717,126340
-static PetscErrorCode PCFieldSplitSetGKBNu_FieldSplit(2726,126618
-static PetscErrorCode PCFieldSplitSetType_FieldSplit(2735,126816
-static PetscErrorCode PCFieldSplitSetBlockSize_FieldSplit(2778,129591
-static PetscErrorCode PCSetCoordinates_FieldSplit(2789,130153
-PetscErrorCode PCFieldSplitSetType(2842,132431
-PetscErrorCode PCFieldSplitGetType(2866,133292
-PetscErrorCode PCFieldSplitSetDMSplits(2893,134144
-PetscErrorCode PCFieldSplitGetDMSplits(2921,135052
-PetscErrorCode PCFieldSplitGetDetectSaddlePoint(2951,135906
-PetscErrorCode PCFieldSplitSetDetectSaddlePoint(2981,136940
-PETSC_EXTERN PetscErrorCode PCCreate_FieldSplit(3102,144565
+PetscErrorCode PCFieldSplitSetSchurPre(2315,111086
+PetscErrorCode PCFieldSplitSchurPrecondition(2323,111379
+PetscErrorCode PCFieldSplitGetSchurPre(2346,112330
+PetscErrorCode PCFieldSplitSchurGetS(2373,113401
+PetscErrorCode PCFieldSplitSchurRestoreS(2403,114483
+static PetscErrorCode PCFieldSplitSetSchurPre_FieldSplit(2420,115242
+static PetscErrorCode PCFieldSplitGetSchurPre_FieldSplit(2434,115673
+PetscErrorCode PCFieldSplitSetSchurFactType(2488,118352
+static PetscErrorCode PCFieldSplitSetSchurFactType_FieldSplit(2496,118638
+PetscErrorCode PCFieldSplitSetSchurScale(2521,119393
+static PetscErrorCode PCFieldSplitSetSchurScale_FieldSplit(2530,119696
+PetscErrorCode PCFieldSplitGetSchurBlocks(2557,120347
+PetscErrorCode PCFieldSplitSetGKBTol(2595,121860
+static PetscErrorCode PCFieldSplitSetGKBTol_FieldSplit(2604,122161
+PetscErrorCode PCFieldSplitSetGKBMaxit(2629,122896
+static PetscErrorCode PCFieldSplitSetGKBMaxit_FieldSplit(2638,123186
+PetscErrorCode PCFieldSplitSetGKBDelay(2672,124558
+static PetscErrorCode PCFieldSplitSetGKBDelay_FieldSplit(2681,124848
+PetscErrorCode PCFieldSplitSetGKBNu(2717,126343
+static PetscErrorCode PCFieldSplitSetGKBNu_FieldSplit(2726,126621
+static PetscErrorCode PCFieldSplitSetType_FieldSplit(2735,126819
+static PetscErrorCode PCFieldSplitSetBlockSize_FieldSplit(2778,129594
+static PetscErrorCode PCSetCoordinates_FieldSplit(2789,130156
+PetscErrorCode PCFieldSplitSetType(2842,132434
+PetscErrorCode PCFieldSplitGetType(2866,133295
+PetscErrorCode PCFieldSplitSetDMSplits(2893,134147
+PetscErrorCode PCFieldSplitGetDMSplits(2921,135055
+PetscErrorCode PCFieldSplitGetDetectSaddlePoint(2951,135909
+PetscErrorCode PCFieldSplitSetDetectSaddlePoint(2981,136943
+PETSC_EXTERN PetscErrorCode PCCreate_FieldSplit(3102,144568
src/ksp/pc/impls/fieldsplit/makefile,114
makefile:^?makefile^A,1
@@ -42844,6 +42844,38 @@
SUBMANSEC 9,133
LOCDIR 10,148
+src/ksp/pc/impls/deflation/deflation.c,1673
+deflation.c:^?deflation.c^A,1
+const char *const PCDeflationSpaceTypes[PCDeflationSpaceTypes3,111
+static PetscErrorCode PCDeflationSetInitOnly_Deflation(5,292
+PetscErrorCode PCDeflationSetInitOnly(32,986
+static PetscErrorCode PCDeflationSetLevels_Deflation(41,1271
+PetscErrorCode PCDeflationSetLevels(67,1932
+static PetscErrorCode PCDeflationSetReductionFactor_Deflation(76,2223
+PetscErrorCode PCDeflationSetReductionFactor(104,2954
+static PetscErrorCode PCDeflationSetCorrectionFactor_Deflation(113,3250
+PetscErrorCode PCDeflationSetCorrectionFactor(146,4252
+static PetscErrorCode PCDeflationSetSpaceToCompute_Deflation(155,4562
+PetscErrorCode PCDeflationSetSpaceToCompute(188,5544
+static PetscErrorCode PCDeflationSetSpace_Deflation(198,5968
+PetscErrorCode PCDeflationSetSpace(238,7364
+static PetscErrorCode PCDeflationSetProjectionNullSpaceMat_Deflation(248,7723
+PetscErrorCode PCDeflationSetProjectionNullSpaceMat(272,8290
+static PetscErrorCode PCDeflationSetCoarseMat_Deflation(281,8593
+PetscErrorCode PCDeflationSetCoarseMat(305,9115
+static PetscErrorCode PCDeflationGetCoarseKSP_Deflation(314,9392
+PetscErrorCode PCDeflationGetCoarseKSP(338,9866
+static PetscErrorCode PCDeflationGetPC_Deflation(347,10126
+PetscErrorCode PCDeflationGetPC(371,10594
+static PetscErrorCode PCPreSolve_Deflation(383,10886
+static PetscErrorCode PCApply_Deflation(423,12139
+static PetscErrorCode PCSetUp_Deflation(453,13225
+static PetscErrorCode PCReset_Deflation(673,22387
+static PetscErrorCode PCDestroy_Deflation(689,22839
+static PetscErrorCode PCView_Deflation(707,23957
+static PetscErrorCode PCSetFromOptions_Deflation(734,25189
+PETSC_EXTERN PetscErrorCode PCCreate_Deflation(832,33106
+
src/ksp/pc/impls/deflation/makefile,115
makefile:^?makefile^A,1
SOURCEC 3,37
@@ -42893,49 +42925,6 @@
PetscBool extendsp;24,765
} PC_Deflation;25,798
-src/ksp/pc/impls/deflation/deflation.c,1673
-deflation.c:^?deflation.c^A,1
-const char *const PCDeflationSpaceTypes[PCDeflationSpaceTypes3,111
-static PetscErrorCode PCDeflationSetInitOnly_Deflation(5,292
-PetscErrorCode PCDeflationSetInitOnly(32,986
-static PetscErrorCode PCDeflationSetLevels_Deflation(41,1271
-PetscErrorCode PCDeflationSetLevels(67,1932
-static PetscErrorCode PCDeflationSetReductionFactor_Deflation(76,2223
-PetscErrorCode PCDeflationSetReductionFactor(104,2954
-static PetscErrorCode PCDeflationSetCorrectionFactor_Deflation(113,3250
-PetscErrorCode PCDeflationSetCorrectionFactor(146,4252
-static PetscErrorCode PCDeflationSetSpaceToCompute_Deflation(155,4562
-PetscErrorCode PCDeflationSetSpaceToCompute(188,5544
-static PetscErrorCode PCDeflationSetSpace_Deflation(198,5968
-PetscErrorCode PCDeflationSetSpace(238,7364
-static PetscErrorCode PCDeflationSetProjectionNullSpaceMat_Deflation(248,7723
-PetscErrorCode PCDeflationSetProjectionNullSpaceMat(272,8290
-static PetscErrorCode PCDeflationSetCoarseMat_Deflation(281,8593
-PetscErrorCode PCDeflationSetCoarseMat(305,9115
-static PetscErrorCode PCDeflationGetCoarseKSP_Deflation(314,9392
-PetscErrorCode PCDeflationGetCoarseKSP(338,9866
-static PetscErrorCode PCDeflationGetPC_Deflation(347,10126
-PetscErrorCode PCDeflationGetPC(371,10594
-static PetscErrorCode PCPreSolve_Deflation(383,10886
-static PetscErrorCode PCApply_Deflation(423,12139
-static PetscErrorCode PCSetUp_Deflation(453,13225
-static PetscErrorCode PCReset_Deflation(673,22387
-static PetscErrorCode PCDestroy_Deflation(689,22839
-static PetscErrorCode PCView_Deflation(707,23957
-static PetscErrorCode PCSetFromOptions_Deflation(734,25189
-PETSC_EXTERN PetscErrorCode PCCreate_Deflation(832,33106
-
-src/ksp/pc/impls/cp/makefile,114
-makefile:^?makefile^A,1
-SOURCEC 3,37
-SOURCEF 4,54
-SOURCEH 5,66
-LIBBASE 6,78
-DIRS 7,102
-MANSEC 8,114
-SUBMANSEC 9,130
-LOCDIR 10,145
-
src/ksp/pc/impls/cp/cp.c,479
cp.c:^?cp.c^A,1
PetscInt n,9,184
@@ -42951,7 +42940,18 @@
static PetscErrorCode PCReset_CP(93,3194
static PetscErrorCode PCDestroy_CP(104,3434
static PetscErrorCode PCSetFromOptions_CP(116,3703
-PETSC_EXTERN PetscErrorCode PCCreate_CP(163,5079
+PETSC_EXTERN PetscErrorCode PCCreate_CP(163,5078
+
+src/ksp/pc/impls/cp/makefile,114
+makefile:^?makefile^A,1
+SOURCEC 3,37
+SOURCEF 4,54
+SOURCEH 5,66
+LIBBASE 6,78
+DIRS 7,102
+MANSEC 8,114
+SUBMANSEC 9,130
+LOCDIR 10,145
src/ksp/pc/impls/composite/composite.c,1797
composite.c:^?composite.c^A,1
@@ -43248,6 +43248,85 @@
SUBMANSEC 11,208
LOCDIR 12,223
+src/ksp/pc/impls/bddc/bddcprivate.c,2875
+bddcprivate.c:^?bddcprivate.c^A,1
+PetscErrorCode MatDenseOrthogonalRangeOrComplement(15,509
+static int inc 82,2779
+static int lev 83,2799
+PetscErrorCode PCBDDCComputeNedelecChangeEdge(86,2827
+PetscErrorCode PCBDDCNedelecSupport(151,5288
+PetscErrorCode PCBDDCNullSpaceCreate(1364,57025
+PetscErrorCode PCBDDCComputeNoNetFlux(1409,58594
+PetscErrorCode PCBDDCAddPrimalVerticesLocalIS(1505,62529
+static PetscErrorCode func_coords_private(1527,63149
+PetscErrorCode PCBDDCComputeLocalTopologyInfo(1536,63420
+PetscErrorCode PCBDDCConsistencyCheckIS(1797,74930
+PetscErrorCode PCBDDCBenignRemoveInterior(1835,76592
+PetscErrorCode PCBDDCBenignMatMult_Private_Private(1867,78012
+PetscErrorCode PCBDDCBenignMatMultTranspose_Private(1948,80473
+PetscErrorCode PCBDDCBenignMatMult_Private(1955,80670
+PetscErrorCode PCBDDCBenignShellMat(1962,80859
+PetscErrorCode PCBDDCBenignProject(2033,83925
+PetscErrorCode MatSeqAIJCompress(2052,84500
+PetscErrorCode PCBDDCDetectDisconnectedComponents(2098,85883
+PetscErrorCode PCBDDCBenignCheck(2345,95729
+PetscErrorCode PCBDDCBenignDetectSaddlePoint(2424,99317
+PetscErrorCode PCBDDCBenignGetOrSetP0(2867,118178
+PetscErrorCode PCBDDCBenignPopOrPushB0(2891,119284
+PetscErrorCode PCBDDCAdaptiveSelection(2990,123828
+PetscErrorCode PCBDDCSetUpSolvers(3596,156734
+PetscErrorCode PCBDDCResetCustomization(3623,157598
+PetscErrorCode PCBDDCResetTopography(3641,158295
+PetscErrorCode PCBDDCResetSolvers(3668,159358
+PetscErrorCode PCBDDCSetUpLocalWorkVectors(3715,161321
+PetscErrorCode PCBDDCSetUpCorrection(3759,163174
+PetscErrorCode MatCreateSubMatrixUnsorted(4778,212276
+PetscErrorCode PCBDDCComputeLocalMatrix(4879,215903
+PetscErrorCode PCBDDCSetUpLocalScatters(4979,220477
+static PetscErrorCode MatNullSpacePropagateAny_Private(5140,228123
+PetscErrorCode PCBDDCSetUpLocalSolvers(5209,231110
+static PetscErrorCode PCBDDCSolveSubstructureCorrection(5524,246450
+PetscErrorCode PCBDDCApplyInterfacePreconditioner(5609,251536
+PetscErrorCode PCBDDCScatterCoarseDataBegin(5738,257692
+PetscErrorCode PCBDDCScatterCoarseDataEnd(5766,258707
+PetscErrorCode PCBDDCConstraintsSetUp(5798,259781
+PetscErrorCode PCBDDCAnalyzeInterface(6835,318020
+PetscErrorCode PCBDDCOrthonormalizeVecs(6934,323170
+PetscErrorCode PCBDDCMatISGetSubassemblingPattern(6980,324392
+ MATDENSE_PRIVATE 7241,335671
+ MATAIJ_PRIVATE,7242,335695
+ MATBAIJ_PRIVATE,7243,335713
+ MATSBAIJ_PRIVATE7244,335732
+} MatTypePrivate;7245,335751
+PetscErrorCode PCBDDCMatISSubassemble(7247,335770
+PetscErrorCode PCBDDCSetUpCoarseSolver(7772,359327
+PetscErrorCode PCBDDCComputePrimalNumbering(8522,397319
+PetscErrorCode PCBDDCGlobalToLocal(8624,403882
+PetscErrorCode PCBDDCComputeFakeChange(8664,405559
+PetscErrorCode PCBDDCSetUpSubSchurs(8720,408013
+PetscErrorCode PCBDDCInitSubSchurs(8833,413737
+PetscErrorCode PCBDDCCheckOperator(8885,416889
+PetscErrorCode MatMPIAIJRestrict(8997,423321
+
+src/ksp/pc/impls/bddc/bddcgraph.c,830
+bddcgraph.c:^?bddcgraph.c^A,1
+PetscErrorCode PCBDDCDestroyGraphCandidatesIS(5,128
+PetscErrorCode PCBDDCGraphGetDirichletDofsB(19,607
+PetscErrorCode PCBDDCGraphGetDirichletDofs(45,1495
+PetscErrorCode PCBDDCGraphASCIIView(71,2367
+PetscErrorCode PCBDDCGraphRestoreCandidatesIS(156,8309
+PetscErrorCode PCBDDCGraphGetCandidatesIS(188,9265
+PetscErrorCode PCBDDCGraphComputeConnectedComponents(282,12698
+static inline PetscErrorCode PCBDDCGraphComputeCC_Private(687,29527
+PetscErrorCode PCBDDCGraphComputeConnectedComponentsLocal(770,32912
+PetscErrorCode PCBDDCGraphSetUp(828,35056
+PetscErrorCode PCBDDCGraphResetCoords(1175,50356
+PetscErrorCode PCBDDCGraphResetCSR(1186,50613
+PetscErrorCode PCBDDCGraphReset(1202,50987
+PetscErrorCode PCBDDCGraphInit(1233,52368
+PetscErrorCode PCBDDCGraphDestroy(1269,53987
+PetscErrorCode PCBDDCGraphCreate(1279,54252
+
src/ksp/pc/impls/bddc/bddc.c,4841
bddc.c:^?bddc.c^A,1
static PetscBool PCBDDCPackageInitialized 26,694
@@ -43383,66 +43462,6 @@
static PetscErrorCode PCBDDCScalingSetUp_Deluxe(392,19147
static PetscErrorCode PCBDDCScalingSetUp_Deluxe_Private(445,21745
-src/ksp/pc/impls/bddc/bddcprivate.c,2875
-bddcprivate.c:^?bddcprivate.c^A,1
-PetscErrorCode MatDenseOrthogonalRangeOrComplement(15,509
-static int inc 82,2779
-static int lev 83,2799
-PetscErrorCode PCBDDCComputeNedelecChangeEdge(86,2827
-PetscErrorCode PCBDDCNedelecSupport(151,5288
-PetscErrorCode PCBDDCNullSpaceCreate(1364,57025
-PetscErrorCode PCBDDCComputeNoNetFlux(1409,58594
-PetscErrorCode PCBDDCAddPrimalVerticesLocalIS(1505,62529
-static PetscErrorCode func_coords_private(1527,63149
-PetscErrorCode PCBDDCComputeLocalTopologyInfo(1536,63420
-PetscErrorCode PCBDDCConsistencyCheckIS(1797,74930
-PetscErrorCode PCBDDCBenignRemoveInterior(1835,76592
-PetscErrorCode PCBDDCBenignMatMult_Private_Private(1867,78012
-PetscErrorCode PCBDDCBenignMatMultTranspose_Private(1948,80473
-PetscErrorCode PCBDDCBenignMatMult_Private(1955,80670
-PetscErrorCode PCBDDCBenignShellMat(1962,80859
-PetscErrorCode PCBDDCBenignProject(2033,83925
-PetscErrorCode MatSeqAIJCompress(2052,84500
-PetscErrorCode PCBDDCDetectDisconnectedComponents(2098,85883
-PetscErrorCode PCBDDCBenignCheck(2345,95729
-PetscErrorCode PCBDDCBenignDetectSaddlePoint(2424,99317
-PetscErrorCode PCBDDCBenignGetOrSetP0(2867,118178
-PetscErrorCode PCBDDCBenignPopOrPushB0(2891,119284
-PetscErrorCode PCBDDCAdaptiveSelection(2990,123828
-PetscErrorCode PCBDDCSetUpSolvers(3596,156734
-PetscErrorCode PCBDDCResetCustomization(3623,157598
-PetscErrorCode PCBDDCResetTopography(3641,158295
-PetscErrorCode PCBDDCResetSolvers(3668,159358
-PetscErrorCode PCBDDCSetUpLocalWorkVectors(3715,161321
-PetscErrorCode PCBDDCSetUpCorrection(3759,163174
-PetscErrorCode MatCreateSubMatrixUnsorted(4778,212275
-PetscErrorCode PCBDDCComputeLocalMatrix(4879,215902
-PetscErrorCode PCBDDCSetUpLocalScatters(4979,220476
-static PetscErrorCode MatNullSpacePropagateAny_Private(5140,228122
-PetscErrorCode PCBDDCSetUpLocalSolvers(5209,231109
-static PetscErrorCode PCBDDCSolveSubstructureCorrection(5524,246449
-PetscErrorCode PCBDDCApplyInterfacePreconditioner(5609,251535
-PetscErrorCode PCBDDCScatterCoarseDataBegin(5738,257691
-PetscErrorCode PCBDDCScatterCoarseDataEnd(5766,258706
-PetscErrorCode PCBDDCConstraintsSetUp(5798,259780
-PetscErrorCode PCBDDCAnalyzeInterface(6835,318019
-PetscErrorCode PCBDDCOrthonormalizeVecs(6934,323169
-PetscErrorCode PCBDDCMatISGetSubassemblingPattern(6980,324391
- MATDENSE_PRIVATE 7241,335670
- MATAIJ_PRIVATE,7242,335694
- MATBAIJ_PRIVATE,7243,335712
- MATSBAIJ_PRIVATE7244,335731
-} MatTypePrivate;7245,335750
-PetscErrorCode PCBDDCMatISSubassemble(7247,335769
-PetscErrorCode PCBDDCSetUpCoarseSolver(7772,359326
-PetscErrorCode PCBDDCComputePrimalNumbering(8522,397318
-PetscErrorCode PCBDDCGlobalToLocal(8624,403881
-PetscErrorCode PCBDDCComputeFakeChange(8664,405558
-PetscErrorCode PCBDDCSetUpSubSchurs(8720,408012
-PetscErrorCode PCBDDCInitSubSchurs(8833,413736
-PetscErrorCode PCBDDCCheckOperator(8885,416888
-PetscErrorCode MatMPIAIJRestrict(8997,423320
-
src/ksp/pc/impls/bddc/bddcnullspace.c,233
bddcnullspace.c:^?bddcnullspace.c^A,1
static PetscErrorCode PCBDDCNullSpaceCorrPreSolve(6,152
@@ -43450,25 +43469,6 @@
static PetscErrorCode PCBDDCNullSpaceCorrDestroy(53,2129
PetscErrorCode PCBDDCNullSpaceAssembleCorrection(66,2531
-src/ksp/pc/impls/bddc/bddcgraph.c,830
-bddcgraph.c:^?bddcgraph.c^A,1
-PetscErrorCode PCBDDCDestroyGraphCandidatesIS(5,128
-PetscErrorCode PCBDDCGraphGetDirichletDofsB(19,607
-PetscErrorCode PCBDDCGraphGetDirichletDofs(45,1495
-PetscErrorCode PCBDDCGraphASCIIView(71,2367
-PetscErrorCode PCBDDCGraphRestoreCandidatesIS(156,8309
-PetscErrorCode PCBDDCGraphGetCandidatesIS(188,9265
-PetscErrorCode PCBDDCGraphComputeConnectedComponents(282,12697
-static inline PetscErrorCode PCBDDCGraphComputeCC_Private(687,29526
-PetscErrorCode PCBDDCGraphComputeConnectedComponentsLocal(770,32911
-PetscErrorCode PCBDDCGraphSetUp(828,35055
-PetscErrorCode PCBDDCGraphResetCoords(1175,50355
-PetscErrorCode PCBDDCGraphResetCSR(1186,50612
-PetscErrorCode PCBDDCGraphReset(1202,50986
-PetscErrorCode PCBDDCGraphInit(1233,52367
-PetscErrorCode PCBDDCGraphDestroy(1269,53986
-PetscErrorCode PCBDDCGraphCreate(1279,54251
-
src/ksp/pc/impls/bddc/bddcfetidp.c,806
bddcfetidp.c:^?bddcfetidp.c^A,1
static PetscErrorCode MatMult_BDdelta_deluxe_nonred(5,113
@@ -44009,6 +44009,61 @@
MANSEC 8,114
LOCDIR 9,129
+src/ksp/ksp/tutorials/ex9.c,120
+ex9.c:^?ex9.c^A,1
+static char help[help2,1
+int main(23,881
+PetscErrorCode CheckError(410,14136
+PetscErrorCode MyKSPMonitor(438,15110
+
+src/ksp/ksp/tutorials/ex70.c,1408
+ex70.c:^?ex70.c^A,1
+static char help[help1,0
+#define NSD 38,2455
+#define NODES_PER_EL 39,2513
+#define U_DOFS 40,2560
+#define P_DOFS 41,2626
+#define GAUSS_POINTS 42,2692
+static void EvaluateBasis_Q1(44,2716
+static void EvaluateBasisDerivatives_Q1(55,3011
+static void EvaluateDerivatives(71,3429
+static void CreateGaussQuadrature(102,4283
+static PetscErrorCode DMDAGetElementEqnums_up(119,4754
+static PetscInt map_wIwDI_uJuDJ(133,5125
+static void BForm_DivT(144,5408
+static void BForm_Grad(192,6793
+static void BForm_Div(222,7753
+static void BForm_Stabilisation(238,8145
+static void BForm_ScaledMassMatrix(270,9221
+static void LForm_MomentumRHS(302,10263
+static PetscErrorCode GetElementCoords(326,11011
+static PetscErrorCode AssembleStokes_A(337,11349
+static PetscErrorCode AssembleStokes_PC(400,14083
+static PetscErrorCode AssembleStokes_RHS(463,16792
+PetscErrorCode DMSwarmPICInsertPointsCellwise(527,19128
+PetscErrorCode MaterialPoint_PopulateCell(660,25063
+PetscErrorCode MaterialPoint_AdvectRK1(699,26405
+PetscErrorCode MaterialPoint_Interpolate(781,29919
+static PetscErrorCode SolveTimeDepStokes(848,32285
+int main(1258,49196
+static PetscErrorCode BCApplyZero_EAST(1276,49779
+static PetscErrorCode BCApplyZero_WEST(1334,51584
+static PetscErrorCode BCApplyZero_NORTH(1393,53376
+static PetscErrorCode BCApplyZero_SOUTH(1451,55161
+static PetscErrorCode DMDAApplyBoundaryConditions(1513,57113
+
+src/ksp/ksp/tutorials/ex10.c,237
+ex10.c:^?ex10.c^A,1
+static char help[help2,1
+ RHS_FILE,18,630
+ RHS_ONE,19,642
+ RHS_RANDOM20,653
+} RHSType;21,666
+const char *const RHSTypes[RHSTypes22,677
+PetscErrorCode CheckResult(24,761
+PetscErrorCode CreateSystem(47,1484
+int main(133,4676
+
src/ksp/ksp/tutorials/ex73.c,1592
ex73.c:^?ex73.c^A,1
static char help[help20,361
@@ -44254,13 +44309,6 @@
testex100:testex10012,297
echo "See https:echo "See https18,697
-src/ksp/ksp/tutorials/ex9.c,120
-ex9.c:^?ex9.c^A,1
-static char help[help2,1
-int main(23,881
-PetscErrorCode CheckError(410,14135
-PetscErrorCode MyKSPMonitor(438,15109
-
src/ksp/ksp/tutorials/ex82.c,85
ex82.c:^?ex82.c^A,1
static char help[help3,23
@@ -44326,42 +44374,6 @@
static char help[help2,1
int main(35,1766
-src/ksp/ksp/tutorials/ex70.c,1408
-ex70.c:^?ex70.c^A,1
-static char help[help1,0
-#define NSD 38,2455
-#define NODES_PER_EL 39,2513
-#define U_DOFS 40,2560
-#define P_DOFS 41,2626
-#define GAUSS_POINTS 42,2692
-static void EvaluateBasis_Q1(44,2716
-static void EvaluateBasisDerivatives_Q1(55,3011
-static void EvaluateDerivatives(71,3429
-static void CreateGaussQuadrature(102,4283
-static PetscErrorCode DMDAGetElementEqnums_up(119,4754
-static PetscInt map_wIwDI_uJuDJ(133,5125
-static void BForm_DivT(144,5408
-static void BForm_Grad(192,6793
-static void BForm_Div(222,7753
-static void BForm_Stabilisation(238,8145
-static void BForm_ScaledMassMatrix(270,9221
-static void LForm_MomentumRHS(302,10263
-static PetscErrorCode GetElementCoords(326,11011
-static PetscErrorCode AssembleStokes_A(337,11349
-static PetscErrorCode AssembleStokes_PC(400,14083
-static PetscErrorCode AssembleStokes_RHS(463,16792
-PetscErrorCode DMSwarmPICInsertPointsCellwise(527,19128
-PetscErrorCode MaterialPoint_PopulateCell(660,25056
-PetscErrorCode MaterialPoint_AdvectRK1(699,26398
-PetscErrorCode MaterialPoint_Interpolate(781,29912
-static PetscErrorCode SolveTimeDepStokes(848,32278
-int main(1258,49189
-static PetscErrorCode BCApplyZero_EAST(1276,49772
-static PetscErrorCode BCApplyZero_WEST(1334,51577
-static PetscErrorCode BCApplyZero_NORTH(1393,53369
-static PetscErrorCode BCApplyZero_SOUTH(1451,55154
-static PetscErrorCode DMDAApplyBoundaryConditions(1513,57106
-
src/ksp/ksp/tutorials/ex7.c,44
ex7.c:^?ex7.c^A,1
static char help[help1,0
@@ -44866,18 +44878,6 @@
#define PYTHON_LIB 75,2098
int main(78,2129
-src/ksp/ksp/tutorials/ex10.c,237
-ex10.c:^?ex10.c^A,1
-static char help[help2,1
- RHS_FILE,18,630
- RHS_ONE,19,642
- RHS_RANDOM20,653
-} RHSType;21,666
-const char *const RHSTypes[RHSTypes22,677
-PetscErrorCode CheckResult(24,761
-PetscErrorCode CreateSystem(47,1484
-int main(133,4675
-
src/ksp/ksp/tutorials/ex1.c,44
ex1.c:^?ex1.c^A,1
static char help[help2,1
@@ -45018,6 +45018,15 @@
testamrex:testamrex20,664
echo "See https:echo "See https25,1056
+src/ksp/ksp/tests/ex11.c,223
+ex11.c:^?ex11.c^A,1
+static const char help[help1,0
+static PetscErrorCode replace_submats(9,274
+PetscErrorCode LSCLoadTestOperators(43,1627
+PetscErrorCode LoadTestMatrices(74,2964
+PetscErrorCode port_lsd_bfbt(146,5699
+int main(264,10620
+
src/ksp/ksp/tests/ex14.c,321
ex14.c:^?ex14.c^A,1
static char help[help2,1
@@ -45400,15 +45409,6 @@
static char help[help2,1
int main(6,105
-src/ksp/ksp/tests/ex11.c,223
-ex11.c:^?ex11.c^A,1
-static const char help[help1,0
-static PetscErrorCode replace_submats(9,274
-PetscErrorCode LSCLoadTestOperators(43,1627
-PetscErrorCode LoadTestMatrices(74,2964
-PetscErrorCode port_lsd_bfbt(146,5699
-int main(264,10620
-
src/ksp/ksp/tests/ex1.c,96
ex1.c:^?ex1.c^A,1
static char help[help2,1
@@ -45454,84 +45454,134 @@
} Stats;70,1855
PetscErrorCode PetscLogView_VecScatter(71,1864
-src/ksp/ksp/interface/itres.c,90
-itres.c:^?itres.c^A,1
-PetscErrorCode KSPInitialResidual(35,992
-PetscErrorCode KSPUnwindPreconditioner(99,3533
-
src/ksp/ksp/interface/itfunc.c,3429
itfunc.c:^?itfunc.c^A,1
static PetscInt level 10,305
static inline PetscErrorCode ObjectView(12,333
PetscErrorCode KSPComputeExtremeSingularValues(54,2098
PetscErrorCode KSPComputeEigenvalues(114,4650
-PetscErrorCode KSPComputeRitz(179,7914
-PetscErrorCode KSPSetUpOnBlocks(210,9096
-PetscErrorCode KSPSetReusePreconditioner(245,10342
-PetscErrorCode KSPGetReusePreconditioner(271,11033
-PetscErrorCode KSPSetSkipPCSetFromOptions(294,11828
-PetscErrorCode KSPSetUp(315,12330
-PetscErrorCode KSPConvergedReasonView(444,17604
-PetscErrorCode KSPConvergedReasonViewSet(509,20676
-PetscErrorCode KSPConvergedReasonViewCancel(539,21867
-PetscErrorCode KSPConvergedReasonViewFromOptions(564,22490
-PetscErrorCode KSPConvergedRateView(610,24279
-static PetscErrorCode KSPViewEigenvalues_Internal(656,26938
-static PetscErrorCode KSPViewSingularvalues_Internal(711,29261
-static PetscErrorCode KSPViewFinalResidual_Internal(729,30035
-static PetscErrorCode KSPMonitorPauseFinal_Internal(752,30948
-static PetscErrorCode KSPSolve_Private(789,32302
-PetscErrorCode KSPSolve(1064,45122
-PetscErrorCode KSPSolveTranspose(1096,46008
-static PetscErrorCode KSPViewFinalMatResidual_Internal(1125,47182
-PetscErrorCode KSPMatSolve(1165,48702
-PetscErrorCode KSPSetMatSolveBatchSize(1268,53923
-PetscErrorCode KSPGetMatSolveBatchSize(1290,54497
-PetscErrorCode KSPResetViewers(1311,55033
-PetscErrorCode KSPReset(1358,56693
-PetscErrorCode KSPDestroy(1394,57608
-PetscErrorCode KSPSetPCSide(1472,60177
-PetscErrorCode KSPGetPCSide(1501,60875
-PetscErrorCode KSPGetTolerances(1535,61776
-PetscErrorCode KSPSetTolerances(1577,63423
-PetscErrorCode KSPSetInitialGuessNonzero(1626,65448
-PetscErrorCode KSPGetInitialGuessNonzero(1651,66084
-PetscErrorCode KSPSetErrorIfNotConverged(1683,67144
-PetscErrorCode KSPGetErrorIfNotConverged(1707,67777
-PetscErrorCode KSPSetInitialGuessKnoll(1731,68522
-PetscErrorCode KSPGetInitialGuessKnoll(1756,69244
-PetscErrorCode KSPGetComputeSingularValues(1792,70338
-PetscErrorCode KSPSetComputeSingularValues(1826,71404
-PetscErrorCode KSPGetComputeEigenvalues(1855,72185
-PetscErrorCode KSPSetComputeEigenvalues(1882,72925
-PetscErrorCode KSPSetComputeRitz(1909,73624
-PetscErrorCode KSPGetRhs(1934,74185
-PetscErrorCode KSPGetSolution(1960,74841
-PetscErrorCode KSPSetPC(1986,75444
-PetscErrorCode KSPGetPC(2016,76106
-PetscErrorCode KSPMonitor(2048,76990
-PetscErrorCode KSPMonitorSet(2111,79635
-PetscErrorCode KSPMonitorCancel(2144,81008
-PetscErrorCode KSPGetMonitorContext(2172,81685
-PetscErrorCode KSPSetResidualHistory(2205,82837
-PetscErrorCode KSPGetResidualHistory(2254,84505
-PetscErrorCode KSPSetErrorHistory(2284,85702
-PetscErrorCode KSPGetErrorHistory(2332,87345
-PetscErrorCode KSPComputeConvergenceRate(2364,88429
-PetscErrorCode KSPSetConvergenceTest(2458,91733
-PetscErrorCode KSPGetConvergenceTest(2495,93220
-PetscErrorCode KSPGetAndClearConvergenceTest(2536,95129
-PetscErrorCode KSPGetConvergenceContext(2564,96025
-PetscErrorCode KSPBuildSolution(2607,97472
-PetscErrorCode KSPBuildResidual(2639,98342
-PetscErrorCode KSPSetDiagonalScale(2689,100016
-PetscErrorCode KSPGetDiagonalScale(2713,100646
-PetscErrorCode KSPSetDiagonalScaleFix(2744,101612
-PetscErrorCode KSPGetDiagonalScaleFix(2769,102337
-PetscErrorCode KSPSetComputeOperators(2811,104000
-PetscErrorCode KSPSetComputeRHS(2847,105074
-PetscErrorCode KSPSetComputeInitialGuess(2883,106212
-PetscErrorCode KSPSetUseExplicitTranspose(2910,107048
+PetscErrorCode KSPComputeRitz(179,7913
+PetscErrorCode KSPSetUpOnBlocks(210,9095
+PetscErrorCode KSPSetReusePreconditioner(245,10341
+PetscErrorCode KSPGetReusePreconditioner(271,11032
+PetscErrorCode KSPSetSkipPCSetFromOptions(294,11834
+PetscErrorCode KSPSetUp(315,12336
+PetscErrorCode KSPConvergedReasonView(444,17610
+PetscErrorCode KSPConvergedReasonViewSet(509,20682
+PetscErrorCode KSPConvergedReasonViewCancel(539,21873
+PetscErrorCode KSPConvergedReasonViewFromOptions(564,22496
+PetscErrorCode KSPConvergedRateView(610,24285
+static PetscErrorCode KSPViewEigenvalues_Internal(656,26944
+static PetscErrorCode KSPViewSingularvalues_Internal(711,29267
+static PetscErrorCode KSPViewFinalResidual_Internal(729,30041
+static PetscErrorCode KSPMonitorPauseFinal_Internal(752,30954
+static PetscErrorCode KSPSolve_Private(789,32308
+PetscErrorCode KSPSolve(1064,45128
+PetscErrorCode KSPSolveTranspose(1096,46014
+static PetscErrorCode KSPViewFinalMatResidual_Internal(1125,47188
+PetscErrorCode KSPMatSolve(1165,48708
+PetscErrorCode KSPSetMatSolveBatchSize(1268,53929
+PetscErrorCode KSPGetMatSolveBatchSize(1290,54503
+PetscErrorCode KSPResetViewers(1311,55039
+PetscErrorCode KSPReset(1358,56699
+PetscErrorCode KSPDestroy(1394,57614
+PetscErrorCode KSPSetPCSide(1472,60183
+PetscErrorCode KSPGetPCSide(1501,60881
+PetscErrorCode KSPGetTolerances(1535,61782
+PetscErrorCode KSPSetTolerances(1577,63429
+PetscErrorCode KSPSetInitialGuessNonzero(1626,65454
+PetscErrorCode KSPGetInitialGuessNonzero(1651,66090
+PetscErrorCode KSPSetErrorIfNotConverged(1683,67150
+PetscErrorCode KSPGetErrorIfNotConverged(1707,67783
+PetscErrorCode KSPSetInitialGuessKnoll(1731,68528
+PetscErrorCode KSPGetInitialGuessKnoll(1756,69250
+PetscErrorCode KSPGetComputeSingularValues(1792,70344
+PetscErrorCode KSPSetComputeSingularValues(1826,71410
+PetscErrorCode KSPGetComputeEigenvalues(1855,72191
+PetscErrorCode KSPSetComputeEigenvalues(1882,72931
+PetscErrorCode KSPSetComputeRitz(1909,73630
+PetscErrorCode KSPGetRhs(1934,74191
+PetscErrorCode KSPGetSolution(1960,74847
+PetscErrorCode KSPSetPC(1986,75450
+PetscErrorCode KSPGetPC(2016,76112
+PetscErrorCode KSPMonitor(2048,76996
+PetscErrorCode KSPMonitorSet(2111,79641
+PetscErrorCode KSPMonitorCancel(2144,81014
+PetscErrorCode KSPGetMonitorContext(2172,81691
+PetscErrorCode KSPSetResidualHistory(2205,82843
+PetscErrorCode KSPGetResidualHistory(2254,84511
+PetscErrorCode KSPSetErrorHistory(2284,85708
+PetscErrorCode KSPGetErrorHistory(2332,87351
+PetscErrorCode KSPComputeConvergenceRate(2364,88435
+PetscErrorCode KSPSetConvergenceTest(2458,91739
+PetscErrorCode KSPGetConvergenceTest(2495,93226
+PetscErrorCode KSPGetAndClearConvergenceTest(2536,95135
+PetscErrorCode KSPGetConvergenceContext(2564,96031
+PetscErrorCode KSPBuildSolution(2607,97478
+PetscErrorCode KSPBuildResidual(2639,98348
+PetscErrorCode KSPSetDiagonalScale(2689,100022
+PetscErrorCode KSPGetDiagonalScale(2713,100652
+PetscErrorCode KSPSetDiagonalScaleFix(2744,101618
+PetscErrorCode KSPGetDiagonalScaleFix(2769,102343
+PetscErrorCode KSPSetComputeOperators(2811,104006
+PetscErrorCode KSPSetComputeRHS(2847,105080
+PetscErrorCode KSPSetComputeInitialGuess(2883,106218
+PetscErrorCode KSPSetUseExplicitTranspose(2910,107054
+
+src/ksp/ksp/interface/itcreate.c,1646
+itcreate.c:^?itcreate.c^A,1
+PetscClassId KSP_CLASSID;7,142
+PetscClassId DMKSP_CLASSID;8,169
+PetscClassId KSPGUESS_CLASSID;9,198
+PetscLogEvent KSP_GMRESOrthogonalization,10,230
+PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp,10,230
+PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve,10,230
+PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve, KSP_SolveTranspose,10,230
+PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve, KSP_SolveTranspose, KSP_MatSolve;10,230
+PetscFunctionList KSPList 15,383
+PetscBool KSPRegisterAllCalled 16,430
+PetscFunctionList KSPMonitorList 21,539
+PetscFunctionList KSPMonitorCreateList 22,593
+PetscFunctionList KSPMonitorDestroyList 23,647
+PetscBool KSPMonitorRegisterAllCalled 24,701
+PetscErrorCode KSPLoad(43,1344
+PetscErrorCode KSPView(103,3476
+PetscErrorCode KSPViewFromOptions(228,8734
+PetscErrorCode KSPSetNormType(272,10663
+PetscErrorCode KSPSetCheckNormIteration(302,11712
+PetscErrorCode KSPSetLagNorm(336,12791
+PetscErrorCode KSPSetSupportedNorm(365,13680
+PetscErrorCode KSPNormSupportTableReset_Private(373,13936
+PetscErrorCode KSPSetUpNorms_Private(382,14200
+PetscErrorCode KSPGetNormType(423,16074
+PetscErrorCode KSPSetOperators(504,19655
+PetscErrorCode KSPGetOperators(538,20921
+PetscErrorCode KSPGetOperatorsSet(568,21969
+PetscErrorCode KSPSetPreSolve(599,22849
+PetscErrorCode KSPSetPostSolve(630,23733
+PetscErrorCode KSPCreate(657,24417
+PetscErrorCode KSPSetType(754,27808
+PetscErrorCode KSPGetType(800,29299
+PetscErrorCode KSPRegister(835,30186
+PetscErrorCode KSPMonitorMakeKey_Internal(843,30418
+PetscErrorCode KSPMonitorRegister(884,31897
+
+src/ksp/ksp/interface/eige.c,337
+eige.c:^?eige.c^A,1
+ KSP ksp;7,125
+ Vec work;8,136
+} Mat_KSP;9,148
+static PetscErrorCode MatCreateVecs_KSP(11,160
+static PetscErrorCode MatMult_KSP(23,436
+PetscErrorCode KSPComputeOperator(57,1500
+PetscErrorCode KSPComputeEigenvaluesExplicitly(111,3605
+static PetscErrorCode PolyEval(235,7696
+PetscErrorCode KSPPlotEigenContours_Private(254,8228
+
+src/ksp/ksp/interface/itres.c,90
+itres.c:^?itres.c^A,1
+PetscErrorCode KSPInitialResidual(35,992
+PetscErrorCode KSPUnwindPreconditioner(99,3533
src/ksp/ksp/interface/iterativ.c,2337
iterativ.c:^?iterativ.c^A,1
@@ -45583,44 +45633,6 @@
PetscErrorCode KSPGetApplicationContext(1959,73127
PetscErrorCode KSPCheckSolve(1993,74398
-src/ksp/ksp/interface/itcreate.c,1646
-itcreate.c:^?itcreate.c^A,1
-PetscClassId KSP_CLASSID;7,142
-PetscClassId DMKSP_CLASSID;8,169
-PetscClassId KSPGUESS_CLASSID;9,198
-PetscLogEvent KSP_GMRESOrthogonalization,10,230
-PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp,10,230
-PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve,10,230
-PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve, KSP_SolveTranspose,10,230
-PetscLogEvent KSP_GMRESOrthogonalization, KSP_SetUp, KSP_Solve, KSP_SolveTranspose, KSP_MatSolve;10,230
-PetscFunctionList KSPList 15,383
-PetscBool KSPRegisterAllCalled 16,430
-PetscFunctionList KSPMonitorList 21,539
-PetscFunctionList KSPMonitorCreateList 22,593
-PetscFunctionList KSPMonitorDestroyList 23,647
-PetscBool KSPMonitorRegisterAllCalled 24,701
-PetscErrorCode KSPLoad(43,1344
-PetscErrorCode KSPView(103,3476
-PetscErrorCode KSPViewFromOptions(228,8734
-PetscErrorCode KSPSetNormType(272,10663
-PetscErrorCode KSPSetCheckNormIteration(302,11712
-PetscErrorCode KSPSetLagNorm(336,12791
-PetscErrorCode KSPSetSupportedNorm(365,13680
-PetscErrorCode KSPNormSupportTableReset_Private(373,13936
-PetscErrorCode KSPSetUpNorms_Private(382,14200
-PetscErrorCode KSPGetNormType(423,16074
-PetscErrorCode KSPSetOperators(504,19655
-PetscErrorCode KSPGetOperators(538,20921
-PetscErrorCode KSPGetOperatorsSet(568,21969
-PetscErrorCode KSPSetPreSolve(599,22849
-PetscErrorCode KSPSetPostSolve(630,23733
-PetscErrorCode KSPCreate(657,24417
-PetscErrorCode KSPSetType(754,27808
-PetscErrorCode KSPGetType(800,29299
-PetscErrorCode KSPRegister(835,30186
-PetscErrorCode KSPMonitorMakeKey_Internal(843,30418
-PetscErrorCode KSPMonitorRegister(884,31897
-
src/ksp/ksp/interface/itcl.c,464
itcl.c:^?itcl.c^A,1
PetscErrorCode KSPSetOptionsPrefix(41,1070
@@ -45651,18 +45663,6 @@
PetscErrorCode KSPGuessFormGuess(289,7842
PetscErrorCode KSPGuessSetUp(311,8378
-src/ksp/ksp/interface/eige.c,337
-eige.c:^?eige.c^A,1
- KSP ksp;7,125
- Vec work;8,136
-} Mat_KSP;9,148
-static PetscErrorCode MatCreateVecs_KSP(11,160
-static PetscErrorCode MatMult_KSP(23,436
-PetscErrorCode KSPComputeOperator(57,1500
-PetscErrorCode KSPComputeEigenvaluesExplicitly(111,3604
-static PetscErrorCode PolyEval(235,7695
-PetscErrorCode KSPPlotEigenContours_Private(254,8227
-
src/ksp/ksp/interface/itregis.c,86
itregis.c:^?itregis.c^A,1
PetscErrorCode KSPRegisterAll(63,2650
@@ -46097,7 +46097,7 @@
PetscErrorCode KSPSetFromOptions_LSQR(511,17384
PetscErrorCode KSPView_LSQR(524,18123
PetscErrorCode KSPLSQRConvergedDefault(579,20443
-PETSC_EXTERN PetscErrorCode KSPCreate_LSQR(636,24064
+PETSC_EXTERN PetscErrorCode KSPCreate_LSQR(636,24065
src/ksp/ksp/impls/lsqr/makefile,69
makefile:^?makefile^A,1
@@ -46389,17 +46389,17 @@
PetscErrorCode KSPLGMRESSetConstant(18,647
PetscErrorCode KSPSetUp_LGMRES(32,1002
PetscErrorCode KSPLGMRESCycle(80,2771
-PetscErrorCode KSPSolve_LGMRES(306,11268
-PetscErrorCode KSPDestroy_LGMRES(348,12775
-static PetscErrorCode KSPLGMRESBuildSoln(377,13909
-static PetscErrorCode KSPLGMRESUpdateHessenberg(480,17474
-static PetscErrorCode KSPLGMRESGetNewVectors(551,20026
-PetscErrorCode KSPBuildSolution_LGMRES(597,21547
-PetscErrorCode KSPView_LGMRES(616,22083
-PetscErrorCode KSPSetFromOptions_LGMRES(633,22764
-static PetscErrorCode KSPLGMRESSetConstant_LGMRES(650,23600
-static PetscErrorCode KSPLGMRESSetAugDim_LGMRES(659,23801
-PETSC_EXTERN PetscErrorCode KSPCreate_LGMRES(712,26708
+PetscErrorCode KSPSolve_LGMRES(306,11269
+PetscErrorCode KSPDestroy_LGMRES(348,12776
+static PetscErrorCode KSPLGMRESBuildSoln(377,13910
+static PetscErrorCode KSPLGMRESUpdateHessenberg(480,17475
+static PetscErrorCode KSPLGMRESGetNewVectors(551,20027
+PetscErrorCode KSPBuildSolution_LGMRES(597,21548
+PetscErrorCode KSPView_LGMRES(616,22084
+PetscErrorCode KSPSetFromOptions_LGMRES(633,22765
+static PetscErrorCode KSPLGMRESSetConstant_LGMRES(650,23601
+static PetscErrorCode KSPLGMRESSetAugDim_LGMRES(659,23802
+PETSC_EXTERN PetscErrorCode KSPCreate_LGMRES(712,26709
src/ksp/ksp/impls/gmres/lgmres/makefile,96
makefile:^?makefile^A,1
@@ -46623,20 +46623,20 @@
#define ORTH 90,4092
#define SMV 91,4122
-src/ksp/ksp/impls/gmres/agmres/agmresdeflation.c,176
-agmresdeflation.c:^?agmresdeflation.c^A,1
-#define DEPTH 16,978
-static PetscErrorCode KSPAGMRESQuickSort(17,996
-static PetscErrorCode KSPAGMRESSchurForm(92,3530
-PetscErrorCode KSPAGMRESComputeDeflationData(179,7548
-
src/ksp/ksp/impls/gmres/agmres/agmresorthog.c,212
agmresorthog.c:^?agmresorthog.c^A,1
#define PETSCKSP_DLL1,0
PetscErrorCode KSPAGMRESRoddecInitNeighboor(20,722
static PetscErrorCode KSPAGMRESRoddecGivens(54,1639
PetscErrorCode KSPAGMRESRoddec(113,3069
-PetscErrorCode KSPAGMRESRodvec(233,7902
+PetscErrorCode KSPAGMRESRodvec(233,7903
+
+src/ksp/ksp/impls/gmres/agmres/agmresdeflation.c,176
+agmresdeflation.c:^?agmresdeflation.c^A,1
+#define DEPTH 16,978
+static PetscErrorCode KSPAGMRESQuickSort(17,996
+static PetscErrorCode KSPAGMRESSchurForm(92,3530
+PetscErrorCode KSPAGMRESComputeDeflationData(179,7548
src/ksp/ksp/impls/gmres/agmres/agmres.c,1122
agmres.c:^?agmres.c^A,1
@@ -47066,7 +47066,7 @@
static PetscErrorCode KSPSolve_Chebyshev(399,16457
static PetscErrorCode KSPView_Chebyshev(567,22548
static PetscErrorCode KSPDestroy_Chebyshev(593,24194
-PETSC_EXTERN PetscErrorCode KSPCreate_Chebyshev(634,26135
+PETSC_EXTERN PetscErrorCode KSPCreate_Chebyshev(634,26134
src/ksp/ksp/impls/cheby/makefile,84
makefile:^?makefile^A,1
@@ -48171,86 +48171,86 @@
subroutine KSPQCGGetQuadratic(366,11228
subroutine KSPRichardsonSetScale(372,11405
subroutine KSPRichardsonSetSelfScale(378,11588
- subroutine KSPComputeOperator(384,11779
- subroutine KSPComputeEigenvaluesExplicitly(391,11978
- subroutine KSPGuessSetFromOptions(399,12253
- subroutine KSPGuessSetTolerance(404,12420
- subroutine KSPGuessDestroy(410,12616
- subroutine KSPGuessCreate(415,12769
- subroutine KSPGuessUpdate(421,12951
- subroutine KSPGuessFormGuess(428,13149
- subroutine KSPGuessSetUp(435,13353
- subroutine KSPSetUseFischerGuess(440,13502
- subroutine KSPSetGuess(447,13714
- subroutine KSPGetGuess(453,13885
- subroutine KSPSetFromOptions(459,14056
- subroutine KSPResetFromOptions(464,14198
- subroutine KSPSetNormType(469,14344
- subroutine KSPSetCheckNormIteration(475,14517
- subroutine KSPSetLagNorm(481,14704
- subroutine KSPSetSupportedNorm(487,14871
- subroutine KSPGetNormType(495,15112
- subroutine KSPSetOperators(501,15285
- subroutine KSPGetOperators(508,15470
- subroutine KSPCreate(515,15655
- subroutine KSPGetResidualNorm(521,15812
- subroutine KSPGetIterationNumber(527,15989
- subroutine KSPGetTotalIterations(533,16170
- subroutine KSPConvergedDefaultSetUIRNorm(539,16351
- subroutine KSPConvergedDefaultSetUMIRNorm(544,16517
- subroutine KSPConvergedDefaultSetConvergedMaxits(549,16685
- subroutine KSPGetConvergedReason(555,16900
- subroutine KSPSetDM(561,17101
- subroutine KSPSetDMActive(567,17248
- subroutine KSPGetDM(573,17417
- subroutine KSPCheckSolve(579,17564
- subroutine KSPComputeExtremeSingularValues(586,17747
- subroutine KSPComputeEigenvalues(593,17983
- subroutine KSPComputeRitz(602,18269
- subroutine KSPSetUpOnBlocks(613,18606
- subroutine KSPSetReusePreconditioner(618,18746
- subroutine KSPGetReusePreconditioner(624,18937
- subroutine KSPSetSkipPCSetFromOptions(630,19128
- subroutine KSPSetUp(636,19321
- subroutine KSPConvergedReasonViewCancel(641,19445
- subroutine KSPConvergedReasonViewFromOptions(646,19609
- subroutine KSPSolve(651,19783
- subroutine KSPSolveTranspose(658,19954
- subroutine KSPMatSolve(665,20143
- subroutine KSPSetMatSolveBatchSize(672,20320
- subroutine KSPGetMatSolveBatchSize(678,20505
- subroutine KSPResetViewers(684,20690
- subroutine KSPReset(689,20828
- subroutine KSPSetPCSide(694,20952
- subroutine KSPGetPCSide(700,21111
- subroutine KSPGetTolerances(706,21270
- subroutine KSPSetTolerances(715,21540
- subroutine KSPSetInitialGuessNonzero(724,21810
- subroutine KSPGetInitialGuessNonzero(730,22001
- subroutine KSPSetErrorIfNotConverged(736,22192
- subroutine KSPGetErrorIfNotConverged(742,22383
- subroutine KSPSetInitialGuessKnoll(748,22574
- subroutine KSPGetInitialGuessKnoll(754,22761
- subroutine KSPGetComputeSingularValues(760,22948
- subroutine KSPSetComputeSingularValues(766,23143
- subroutine KSPGetComputeEigenvalues(772,23338
- subroutine KSPSetComputeEigenvalues(778,23527
- subroutine KSPSetComputeRitz(784,23716
- subroutine KSPGetRhs(790,23891
- subroutine KSPGetSolution(796,24043
- subroutine KSPSetPC(802,24205
- subroutine KSPGetPC(808,24352
- subroutine KSPMonitor(814,24499
- subroutine KSPMonitorCancel(821,24691
- subroutine KSPSetResidualHistory(826,24831
- subroutine KSPSetErrorHistory(834,25082
- subroutine KSPSetDiagonalScale(842,25327
- subroutine KSPGetDiagonalScale(848,25506
- subroutine KSPSetDiagonalScaleFix(854,25685
- subroutine KSPGetDiagonalScaleFix(860,25870
- subroutine KSPSetUseExplicitTranspose(866,26055
- subroutine KSPInitialResidual(872,26248
- subroutine KSPUnwindPreconditioner(882,26502
+ subroutine KSPGuessSetFromOptions(384,11779
+ subroutine KSPGuessSetTolerance(389,11946
+ subroutine KSPGuessDestroy(395,12142
+ subroutine KSPGuessCreate(400,12295
+ subroutine KSPGuessUpdate(406,12477
+ subroutine KSPGuessFormGuess(413,12675
+ subroutine KSPGuessSetUp(420,12879
+ subroutine KSPSetUseFischerGuess(425,13028
+ subroutine KSPSetGuess(432,13240
+ subroutine KSPGetGuess(438,13411
+ subroutine KSPSetFromOptions(444,13582
+ subroutine KSPResetFromOptions(449,13724
+ subroutine KSPGetResidualNorm(454,13870
+ subroutine KSPGetIterationNumber(460,14047
+ subroutine KSPGetTotalIterations(466,14228
+ subroutine KSPConvergedDefaultSetUIRNorm(472,14409
+ subroutine KSPConvergedDefaultSetUMIRNorm(477,14575
+ subroutine KSPConvergedDefaultSetConvergedMaxits(482,14743
+ subroutine KSPGetConvergedReason(488,14958
+ subroutine KSPSetDM(494,15159
+ subroutine KSPSetDMActive(500,15306
+ subroutine KSPGetDM(506,15475
+ subroutine KSPCheckSolve(512,15622
+ subroutine KSPInitialResidual(519,15805
+ subroutine KSPUnwindPreconditioner(529,16059
+ subroutine KSPComputeOperator(536,16260
+ subroutine KSPComputeEigenvaluesExplicitly(543,16459
+ subroutine KSPSetNormType(551,16734
+ subroutine KSPSetCheckNormIteration(557,16907
+ subroutine KSPSetLagNorm(563,17094
+ subroutine KSPSetSupportedNorm(569,17261
+ subroutine KSPGetNormType(577,17502
+ subroutine KSPSetOperators(583,17675
+ subroutine KSPGetOperators(590,17860
+ subroutine KSPCreate(597,18045
+ subroutine KSPComputeExtremeSingularValues(603,18202
+ subroutine KSPComputeEigenvalues(610,18438
+ subroutine KSPComputeRitz(619,18724
+ subroutine KSPSetUpOnBlocks(630,19061
+ subroutine KSPSetReusePreconditioner(635,19201
+ subroutine KSPGetReusePreconditioner(641,19392
+ subroutine KSPSetSkipPCSetFromOptions(647,19583
+ subroutine KSPSetUp(653,19776
+ subroutine KSPConvergedReasonViewCancel(658,19900
+ subroutine KSPConvergedReasonViewFromOptions(663,20064
+ subroutine KSPSolve(668,20238
+ subroutine KSPSolveTranspose(675,20409
+ subroutine KSPMatSolve(682,20598
+ subroutine KSPSetMatSolveBatchSize(689,20775
+ subroutine KSPGetMatSolveBatchSize(695,20960
+ subroutine KSPResetViewers(701,21145
+ subroutine KSPReset(706,21283
+ subroutine KSPSetPCSide(711,21407
+ subroutine KSPGetPCSide(717,21566
+ subroutine KSPGetTolerances(723,21725
+ subroutine KSPSetTolerances(732,21995
+ subroutine KSPSetInitialGuessNonzero(741,22265
+ subroutine KSPGetInitialGuessNonzero(747,22456
+ subroutine KSPSetErrorIfNotConverged(753,22647
+ subroutine KSPGetErrorIfNotConverged(759,22838
+ subroutine KSPSetInitialGuessKnoll(765,23029
+ subroutine KSPGetInitialGuessKnoll(771,23216
+ subroutine KSPGetComputeSingularValues(777,23403
+ subroutine KSPSetComputeSingularValues(783,23598
+ subroutine KSPGetComputeEigenvalues(789,23793
+ subroutine KSPSetComputeEigenvalues(795,23982
+ subroutine KSPSetComputeRitz(801,24171
+ subroutine KSPGetRhs(807,24346
+ subroutine KSPGetSolution(813,24498
+ subroutine KSPSetPC(819,24660
+ subroutine KSPGetPC(825,24807
+ subroutine KSPMonitor(831,24954
+ subroutine KSPMonitorCancel(838,25146
+ subroutine KSPSetResidualHistory(843,25286
+ subroutine KSPSetErrorHistory(851,25537
+ subroutine KSPSetDiagonalScale(859,25782
+ subroutine KSPGetDiagonalScale(865,25961
+ subroutine KSPSetDiagonalScaleFix(871,26140
+ subroutine KSPGetDiagonalScaleFix(877,26325
+ subroutine KSPSetUseExplicitTranspose(883,26510
subroutine DMGlobalToLocalSolve(889,26703
subroutine MatLMVMUpdate(896,26895
subroutine MatLMVMClearJ0(903,27076
@@ -48473,6 +48473,11 @@
static char help[help2,1
int main(36,1123
+src/dm/tests/ex53.c,44
+ex53.c:^?ex53.c^A,1
+static char help[help1,0
+int main(15,580
+
src/dm/tests/makefile,47
makefile:^?makefile^A,1
LOCDIR 3,31
@@ -48501,11 +48506,6 @@
static char help[help1,0
int main(7,138
-src/dm/tests/ex53.c,44
-ex53.c:^?ex53.c^A,1
-static char help[help1,0
-int main(15,579
-
src/dm/tests/ex52.c,43
ex52.c:^?ex52.c^A,1
static char help[help2,1
@@ -48820,16 +48820,16 @@
LOCDIR 5,75
MANSEC 6,106
-src/dm/partitioner/tests/makefile,26
-makefile:^?makefile^A,1
-LOCDIR 3,34
-MANSEC 4,78
-
src/dm/partitioner/tests/ex33.c,42
ex33.c:^?ex33.c^A,1
static char help[help1,0
int main(5,84
+src/dm/partitioner/tests/makefile,26
+makefile:^?makefile^A,1
+LOCDIR 3,34
+MANSEC 4,78
+
src/dm/partitioner/interface/partitionerreg.c,426
partitionerreg.c:^?partitionerreg.c^A,1
PetscClassId PETSCPARTITIONER_CLASSID 3,73
@@ -49189,40 +49189,6 @@
PETSC_EXTERN void dmlabelview_(15,512
PETSC_EXTERN void petscsectionsymlabelsetstratum_(22,699
-src/dm/interface/dmcoordinates.c,1519
-dmcoordinates.c:^?dmcoordinates.c^A,1
-PetscErrorCode DMRestrictHook_Coordinates(6,180
-static PetscErrorCode DMSubDomainHook_Coordinates(28,950
-PetscErrorCode DMGetCoordinateDM(76,2942
-PetscErrorCode DMSetCoordinateDM(109,4013
-PetscErrorCode DMGetCellCoordinateDM(139,5009
-PetscErrorCode DMSetCellCoordinateDM(165,5894
-PetscErrorCode DMGetCoordinateDim(197,6800
-PetscErrorCode DMSetCoordinateDim(220,7457
-PetscErrorCode DMGetCoordinateSection(260,8377
-PetscErrorCode DMSetCoordinateSection(286,9063
-PetscErrorCode DMGetCellCoordinateSection(337,10564
-PetscErrorCode DMSetCellCoordinateSection(364,11408
-PetscErrorCode DMGetCoordinates(418,13142
-PetscErrorCode DMSetCoordinates(454,14308
-PetscErrorCode DMGetCellCoordinates(489,15466
-PetscErrorCode DMSetCellCoordinates(525,16675
-PetscErrorCode DMGetCoordinatesLocalSetUp(549,17376
-PetscErrorCode DMGetCoordinatesLocal(592,18886
-PetscErrorCode DMGetCoordinatesLocalNoncollective(620,19760
-PetscErrorCode DMGetCoordinatesLocalTuple(657,21272
-PetscErrorCode DMSetCoordinatesLocal(713,23407
-PetscErrorCode DMGetCellCoordinatesLocalSetUp(737,24109
-PetscErrorCode DMGetCellCoordinatesLocal(773,25291
-PetscErrorCode DMGetCellCoordinatesLocalNoncollective(798,26083
-PetscErrorCode DMSetCellCoordinatesLocal(828,27117
-PetscErrorCode DMGetCoordinateField(840,27503
-PetscErrorCode DMSetCoordinateField(852,27886
-PetscErrorCode DMGetLocalBoundingBox(882,28767
-PetscErrorCode DMGetBoundingBox(951,30992
-PetscErrorCode DMProjectCoordinates(988,32493
-PetscErrorCode DMLocatePoints(1108,37408
-
src/dm/interface/dm.c,13081
dm.c:^?dm.c^A,1
PetscClassId DM_CLASSID;18,489
@@ -49258,224 +49224,258 @@
PetscErrorCode MatGetDM(433,14322
PetscErrorCode MatSetDM(462,15090
PetscErrorCode DMSetOptionsPrefix(488,15840
-PetscErrorCode DMAppendOptionsPrefix(517,16980
-PetscErrorCode DMGetOptionsPrefix(545,17709
-static PetscErrorCode DMCountNonCyclicReferences_Internal(553,17939
-PetscErrorCode DMCountNonCyclicReferences(582,18802
-PetscErrorCode DMDestroyLabelLinkList_Internal(589,19023
-PetscErrorCode DMDestroyCoordinates_Private(608,19491
-PetscErrorCode DMDestroy(631,20069
-PetscErrorCode DMSetUp(816,26435
-PetscErrorCode DMSetFromOptions(893,31502
-PetscErrorCode DMViewFromOptions(935,33782
-PetscErrorCode DMView(963,35017
-PetscErrorCode DMCreateGlobalVector(1017,37073
-PetscErrorCode DMCreateLocalVector(1051,38122
-PetscErrorCode DMGetLocalToGlobalMapping(1090,39440
-PetscErrorCode DMGetBlockSize(1177,42700
-PetscErrorCode DMCreateInterpolation(1212,44299
-PetscErrorCode DMCreateInterpolationScale(1245,45715
-PetscErrorCode DMCreateRestriction(1295,47640
-PetscErrorCode DMCreateInjection(1331,49310
-PetscErrorCode DMCreateMassMatrix(1365,50517
-PetscErrorCode DMCreateMassMatrixLumped(1395,51490
-PetscErrorCode DMCreateColoring(1427,52774
-PetscErrorCode DMCreateMatrix(1467,54320
-PetscErrorCode DMSetMatrixPreallocateSkip(1522,56210
-PetscErrorCode DMSetMatrixPreallocateOnly(1547,56989
-PetscErrorCode DMSetMatrixStructureOnly(1569,57589
-PetscErrorCode DMGetWorkArray(1599,58381
-PetscErrorCode DMRestoreWorkArray(1649,59828
-PetscErrorCode DMSetNullSpaceConstructor(1695,61340
-PetscErrorCode DMGetNullSpaceConstructor(1732,62659
-PetscErrorCode DMSetNearNullSpaceConstructor(1769,64026
-PetscErrorCode DMGetNearNullSpaceConstructor(1807,65393
-PetscErrorCode DMCreateFieldIS(1847,66967
-PetscErrorCode DMCreateFieldDecomposition(1976,71934
-PetscErrorCode DMCreateSubDM(2053,74904
-PetscErrorCode DMCreateSuperDM(2084,76019
-PetscErrorCode DMCreateDomainDecomposition(2132,78362
-PetscErrorCode DMCreateDomainDecompositionScatters(2209,81227
-PetscErrorCode DMRefine(2240,82186
-PetscErrorCode DMRefineHookAdd(2307,84584
-PetscErrorCode DMRefineHookRemove(2347,86146
-PetscErrorCode DMInterpolate(2382,87323
-PetscErrorCode DMInterpolateSolution(2422,88789
-PetscErrorCode DMGetRefineLevel(2459,90188
-PetscErrorCode DMSetRefineLevel(2485,90962
-PetscErrorCode DMExtrude(2512,91543
-PetscErrorCode DMGetBasisTransformDM_Internal(2526,91988
-PetscErrorCode DMGetBasisTransformVec_Internal(2535,92205
-PetscErrorCode DMHasBasisTransform(2557,92804
-PetscErrorCode DMConstructBasisTransform_Internal(2569,93101
-PetscErrorCode DMCopyTransform(2617,94928
-PetscErrorCode DMGlobalToLocalHookAdd(2663,96551
-static PetscErrorCode DMGlobalToLocalHook_Constraints(2679,97137
-PetscErrorCode DMGlobalToLocal(2735,99194
-PetscErrorCode DMGlobalToLocalBegin(2767,100388
-PetscErrorCode DMGlobalToLocalEnd(2813,102121
-PetscErrorCode DMLocalToGlobalHookAdd(2878,104531
-static PetscErrorCode DMLocalToGlobalHook_Constraints(2894,105117
-PetscErrorCode DMLocalToGlobal(2954,107608
-PetscErrorCode DMLocalToGlobalBegin(2988,109016
-PetscErrorCode DMLocalToGlobalEnd(3116,114087
-PetscErrorCode DMLocalToLocalBegin(3189,116741
-PetscErrorCode DMLocalToLocalEnd(3215,117732
-PetscErrorCode DMCoarsen(3239,118489
-PetscErrorCode DMCoarsenHookAdd(3310,121505
-PetscErrorCode DMCoarsenHookRemove(3349,122966
-PetscErrorCode DMRestrict(3385,124297
-PetscErrorCode DMSubDomainHookAdd(3438,126263
-PetscErrorCode DMSubDomainHookRemove(3474,127683
-PetscErrorCode DMSubDomainRestrict(3506,128801
-PetscErrorCode DMGetCoarsenLevel(3532,129547
-PetscErrorCode DMSetCoarsenLevel(3557,130281
-PetscErrorCode DMRefineHierarchy(3581,130867
-PetscErrorCode DMCoarsenHierarchy(3615,132063
-PetscErrorCode DMSetApplicationContextDestroy(3646,133370
-PetscErrorCode DMSetApplicationContext(3670,134108
-PetscErrorCode DMGetApplicationContext(3696,134826
-PetscErrorCode DMSetVariableBounds(3718,135595
-PetscErrorCode DMHasVariableBounds(3741,136282
-PetscErrorCode DMComputeVariableBounds(3769,137110
-PetscErrorCode DMHasColoring(3794,137731
-PetscErrorCode DMHasCreateRestriction(3818,138358
-PetscErrorCode DMHasCreateInjection(3842,138995
-PetscFunctionList DMList 3852,139340
-PetscBool DMRegisterAllCalled 3853,139386
-PetscErrorCode DMSetType(3874,140021
-PetscErrorCode DMGetType(3910,140966
-PetscErrorCode DMConvert(3941,141752
-PetscErrorCode DMRegister(4062,146060
-PetscErrorCode DMLoad(4101,147552
-PetscErrorCode DMPrintCellVector(4130,148883
-PetscErrorCode DMPrintCellMatrix(4140,149255
-PetscErrorCode DMPrintLocalVec(4154,149797
-PetscErrorCode DMGetSection(4205,151391
-PetscErrorCode DMGetLocalSection(4231,151997
-PetscErrorCode DMSetSection(4280,153623
-PetscErrorCode DMSetLocalSection(4301,154090
-PetscErrorCode DMGetDefaultConstraints(4349,155942
-PetscErrorCode DMSetDefaultConstraints(4382,158383
-static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(4428,160457
-PetscErrorCode DMGetGlobalSection(4511,163708
-PetscErrorCode DMSetGlobalSection(4545,165009
-PetscErrorCode DMGetSectionSF(4576,165956
-PetscErrorCode DMSetSectionSF(4615,166926
-PetscErrorCode DMCreateSectionSF(4647,168041
-PetscErrorCode DMGetPointSF(4673,168760
-PetscErrorCode DMSetPointSF(4695,169245
-PetscErrorCode DMGetNaturalSF(4722,169974
-PetscErrorCode DMSetNaturalSF(4742,170476
-static PetscErrorCode DMSetDefaultAdjacency_Private(4753,170804
-static PetscErrorCode DMFieldEnlarge_Static(4769,171286
-PetscErrorCode DMClearFields(4801,172023
-PetscErrorCode DMGetNumFields(4832,172627
-PetscErrorCode DMSetNumFields(4854,173070
-PetscErrorCode DMGetField(4888,173963
-PetscErrorCode DMSetField_Internal(4900,174446
-PetscErrorCode DMSetField(4929,175356
-PetscErrorCode DMAddField(4964,176926
-PetscErrorCode DMSetFieldAvoidTensor(4996,177877
-PetscErrorCode DMGetFieldAvoidTensor(5020,178637
-PetscErrorCode DMCopyFields(5043,179283
-PetscErrorCode DMGetAdjacency(5087,180797
-PetscErrorCode DMSetAdjacency(5128,182427
-PetscErrorCode DMGetBasicAdjacency(5167,183826
-PetscErrorCode DMSetBasicAdjacency(5203,185137
-PetscErrorCode DMCompleteBCLabels_Internal(5218,185532
-static PetscErrorCode DMDSEnlarge_Static(5304,188803
-PetscErrorCode DMGetNumDS(5339,189546
-PetscErrorCode DMClearDS(5360,189948
-PetscErrorCode DMGetDS(5392,190572
-PetscErrorCode DMGetCellDS(5424,191234
-PetscErrorCode DMGetRegionDS(5473,192650
-PetscErrorCode DMSetRegionDS(5517,193969
-PetscErrorCode DMGetRegionNumDS(5565,195455
-PetscErrorCode DMSetRegionNumDS(5604,196631
-PetscErrorCode DMFindRegionNum(5647,198060
-PetscErrorCode DMCreateFEDefault(5684,199084
-PetscErrorCode DMCreateDS(5720,200237
-PetscErrorCode DMComputeExactSolution(5959,208735
-PetscErrorCode DMTransferDS_Internal(6023,211168
-PetscErrorCode DMCopyDS(6077,213004
-PetscErrorCode DMCopyDisc(6128,214423
-PetscErrorCode DMGetDimension(6151,214835
-PetscErrorCode DMSetDimension(6173,215260
-PetscErrorCode DMGetDimPoints(6214,216377
-PetscErrorCode DMGetOutputDM(6246,217631
-PetscErrorCode DMGetOutputSequenceNumber(6301,219378
-PetscErrorCode DMSetOutputSequenceNumber(6332,220152
-PetscErrorCode DMOutputSequenceLoad(6363,221019
-PetscErrorCode DMGetUseNatural(6398,222083
-PetscErrorCode DMSetUseNatural(6423,222812
-PetscErrorCode DMCreateLabel(6445,223376
-PetscErrorCode DMCreateLabelAtIndex(6476,224213
-PetscErrorCode DMGetLabelValue(6532,225864
-PetscErrorCode DMSetLabelValue(6562,226637
-PetscErrorCode DMClearLabelValue(6593,227404
-PetscErrorCode DMGetLabelSize(6625,228254
-PetscErrorCode DMGetLabelIdIS(6656,228981
-PetscErrorCode DMGetStratumSize(6692,229839
-PetscErrorCode DMGetStratumIS(6724,230632
-PetscErrorCode DMSetStratumIS(6754,231398
-PetscErrorCode DMClearLabelStratum(6784,232164
-PetscErrorCode DMGetNumLabels(6812,232866
-PetscErrorCode DMGetLabelName(6847,233649
-PetscErrorCode DMHasLabel(6882,234565
-PetscErrorCode DMGetLabel(6925,235975
-PetscErrorCode DMGetLabelByNum(6964,236845
-PetscErrorCode DMAddLabel(6996,237607
-PetscErrorCode DMSetLabel(7042,239287
-PetscErrorCode DMRemoveLabel(7087,240716
-PetscErrorCode DMRemoveLabelBySelf(7137,242288
-PetscErrorCode DMGetLabelOutput(7180,243742
-PetscErrorCode DMSetLabelOutput(7217,244821
-PetscErrorCode DMCopyLabels(7258,246195
-PetscErrorCode DMCompareLabels(7346,249240
-PetscErrorCode DMSetLabelValue_Fast(7407,251466
-PetscErrorCode DMUniversalLabelCreate(7427,252216
-PetscErrorCode DMUniversalLabelDestroy(7526,255523
-PetscErrorCode DMUniversalLabelGetLabel(7540,256033
-PetscErrorCode DMUniversalLabelCreateLabels(7548,256219
-PetscErrorCode DMUniversalLabelSetLabelValue(7571,257021
-PetscErrorCode DMGetCoarseDM(7604,257834
-PetscErrorCode DMSetCoarseDM(7627,258358
-PetscErrorCode DMGetFineDM(7652,258961
-PetscErrorCode DMSetFineDM(7675,259446
-PetscErrorCode DMAddBoundary(7747,262583
-static PetscErrorCode DMPopulateBoundary(7780,263939
-PetscErrorCode DMIsBoundaryPoint(7820,264943
-PetscErrorCode DMProjectFunction(7877,266657
-PetscErrorCode DMProjectFunctionLocal(7924,268335
-PetscErrorCode DMProjectFunctionLabel(7967,270019
-PetscErrorCode DMProjectFunctionLabelLocal(8015,271990
-PetscErrorCode DMProjectFieldLocal(8079,275438
-PetscErrorCode DMProjectFieldLabelLocal(8149,279419
-PetscErrorCode DMProjectFieldLabel(8219,283529
-PetscErrorCode DMProjectBdFieldLabelLocal(8300,288048
-PetscErrorCode DMComputeL2Diff(8334,289668
-PetscErrorCode DMComputeL2GradientDiff(8368,290919
-PetscErrorCode DMComputeL2FieldDiff(8401,292204
-PetscErrorCode DMGetNeighbors(8429,293013
-PetscErrorCode MatFDColoringApply_AIJDM(8443,293534
-PetscErrorCode MatFDColoringUseDM(8478,294721
-PetscErrorCode DMGetCompatibility(8563,298282
-PetscErrorCode DMMonitorSet(8640,301082
-PetscErrorCode DMMonitorCancel(8679,302419
-PetscErrorCode DMMonitorSetFromOptions(8718,304031
-PetscErrorCode DMMonitor(8753,305367
-PetscErrorCode DMComputeError(8787,306339
-PetscErrorCode DMGetNumAuxiliaryVec(8869,309416
-PetscErrorCode DMGetAuxiliaryVec(8898,310210
-PetscErrorCode DMSetAuxiliaryVec(8931,311272
-PetscErrorCode DMGetAuxiliaryLabels(8970,312477
-PetscErrorCode DMCopyAuxiliaryVec(9010,313510
-PetscErrorCode DMPolytopeMatchOrientation(9045,314902
-PetscErrorCode DMPolytopeGetOrientation(9094,316520
-PetscErrorCode DMPolytopeMatchVertexOrientation(9130,318033
-PetscErrorCode DMPolytopeGetVertexOrientation(9179,319627
-PetscErrorCode DMPolytopeInCellTest(9205,320435
+PetscErrorCode DMAppendOptionsPrefix(517,16981
+PetscErrorCode DMGetOptionsPrefix(545,17710
+static PetscErrorCode DMCountNonCyclicReferences_Internal(553,17940
+PetscErrorCode DMCountNonCyclicReferences(582,18803
+PetscErrorCode DMDestroyLabelLinkList_Internal(589,19024
+PetscErrorCode DMDestroyCoordinates_Private(608,19492
+PetscErrorCode DMDestroy(631,20070
+PetscErrorCode DMSetUp(816,26436
+PetscErrorCode DMSetFromOptions(893,31503
+PetscErrorCode DMViewFromOptions(935,33783
+PetscErrorCode DMView(963,35018
+PetscErrorCode DMCreateGlobalVector(1017,37074
+PetscErrorCode DMCreateLocalVector(1051,38123
+PetscErrorCode DMGetLocalToGlobalMapping(1090,39441
+PetscErrorCode DMGetBlockSize(1177,42701
+PetscErrorCode DMCreateInterpolation(1212,44300
+PetscErrorCode DMCreateInterpolationScale(1245,45716
+PetscErrorCode DMCreateRestriction(1295,47641
+PetscErrorCode DMCreateInjection(1331,49311
+PetscErrorCode DMCreateMassMatrix(1365,50518
+PetscErrorCode DMCreateMassMatrixLumped(1395,51491
+PetscErrorCode DMCreateColoring(1427,52775
+PetscErrorCode DMCreateMatrix(1467,54321
+PetscErrorCode DMSetMatrixPreallocateSkip(1522,56211
+PetscErrorCode DMSetMatrixPreallocateOnly(1547,56990
+PetscErrorCode DMSetMatrixStructureOnly(1569,57591
+PetscErrorCode DMGetWorkArray(1599,58384
+PetscErrorCode DMRestoreWorkArray(1649,59831
+PetscErrorCode DMSetNullSpaceConstructor(1695,61343
+PetscErrorCode DMGetNullSpaceConstructor(1732,62662
+PetscErrorCode DMSetNearNullSpaceConstructor(1769,64029
+PetscErrorCode DMGetNearNullSpaceConstructor(1807,65396
+PetscErrorCode DMCreateFieldIS(1847,66970
+PetscErrorCode DMCreateFieldDecomposition(1976,71937
+PetscErrorCode DMCreateSubDM(2053,74907
+PetscErrorCode DMCreateSuperDM(2084,76022
+PetscErrorCode DMCreateDomainDecomposition(2132,78365
+PetscErrorCode DMCreateDomainDecompositionScatters(2209,81230
+PetscErrorCode DMRefine(2240,82189
+PetscErrorCode DMRefineHookAdd(2307,84587
+PetscErrorCode DMRefineHookRemove(2347,86149
+PetscErrorCode DMInterpolate(2382,87326
+PetscErrorCode DMInterpolateSolution(2422,88792
+PetscErrorCode DMGetRefineLevel(2459,90191
+PetscErrorCode DMSetRefineLevel(2485,90965
+PetscErrorCode DMExtrude(2512,91546
+PetscErrorCode DMGetBasisTransformDM_Internal(2526,91991
+PetscErrorCode DMGetBasisTransformVec_Internal(2535,92208
+PetscErrorCode DMHasBasisTransform(2557,92807
+PetscErrorCode DMConstructBasisTransform_Internal(2569,93104
+PetscErrorCode DMCopyTransform(2617,94931
+PetscErrorCode DMGlobalToLocalHookAdd(2663,96554
+static PetscErrorCode DMGlobalToLocalHook_Constraints(2679,97140
+PetscErrorCode DMGlobalToLocal(2735,99197
+PetscErrorCode DMGlobalToLocalBegin(2767,100391
+PetscErrorCode DMGlobalToLocalEnd(2813,102124
+PetscErrorCode DMLocalToGlobalHookAdd(2878,104534
+static PetscErrorCode DMLocalToGlobalHook_Constraints(2894,105120
+PetscErrorCode DMLocalToGlobal(2954,107611
+PetscErrorCode DMLocalToGlobalBegin(2988,109019
+PetscErrorCode DMLocalToGlobalEnd(3116,114090
+PetscErrorCode DMLocalToLocalBegin(3189,116744
+PetscErrorCode DMLocalToLocalEnd(3215,117735
+PetscErrorCode DMCoarsen(3239,118492
+PetscErrorCode DMCoarsenHookAdd(3310,121508
+PetscErrorCode DMCoarsenHookRemove(3349,122969
+PetscErrorCode DMRestrict(3385,124300
+PetscErrorCode DMSubDomainHookAdd(3438,126266
+PetscErrorCode DMSubDomainHookRemove(3474,127686
+PetscErrorCode DMSubDomainRestrict(3506,128804
+PetscErrorCode DMGetCoarsenLevel(3532,129550
+PetscErrorCode DMSetCoarsenLevel(3557,130284
+PetscErrorCode DMRefineHierarchy(3581,130870
+PetscErrorCode DMCoarsenHierarchy(3615,132066
+PetscErrorCode DMSetApplicationContextDestroy(3646,133373
+PetscErrorCode DMSetApplicationContext(3670,134111
+PetscErrorCode DMGetApplicationContext(3696,134829
+PetscErrorCode DMSetVariableBounds(3718,135598
+PetscErrorCode DMHasVariableBounds(3741,136285
+PetscErrorCode DMComputeVariableBounds(3769,137113
+PetscErrorCode DMHasColoring(3794,137734
+PetscErrorCode DMHasCreateRestriction(3818,138361
+PetscErrorCode DMHasCreateInjection(3842,138998
+PetscFunctionList DMList 3852,139343
+PetscBool DMRegisterAllCalled 3853,139389
+PetscErrorCode DMSetType(3874,140024
+PetscErrorCode DMGetType(3910,140969
+PetscErrorCode DMConvert(3941,141755
+PetscErrorCode DMRegister(4062,146063
+PetscErrorCode DMLoad(4101,147555
+PetscErrorCode DMPrintCellVector(4130,148886
+PetscErrorCode DMPrintCellMatrix(4140,149258
+PetscErrorCode DMPrintLocalVec(4154,149800
+PetscErrorCode DMGetSection(4205,151394
+PetscErrorCode DMGetLocalSection(4231,152000
+PetscErrorCode DMSetSection(4280,153626
+PetscErrorCode DMSetLocalSection(4301,154093
+PetscErrorCode DMGetDefaultConstraints(4349,155945
+PetscErrorCode DMSetDefaultConstraints(4382,158386
+static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(4428,160460
+PetscErrorCode DMGetGlobalSection(4511,163711
+PetscErrorCode DMSetGlobalSection(4545,165012
+PetscErrorCode DMGetSectionSF(4576,165959
+PetscErrorCode DMSetSectionSF(4615,166929
+PetscErrorCode DMCreateSectionSF(4647,168044
+PetscErrorCode DMGetPointSF(4673,168763
+PetscErrorCode DMSetPointSF(4695,169248
+PetscErrorCode DMGetNaturalSF(4722,169977
+PetscErrorCode DMSetNaturalSF(4742,170479
+static PetscErrorCode DMSetDefaultAdjacency_Private(4753,170807
+static PetscErrorCode DMFieldEnlarge_Static(4769,171289
+PetscErrorCode DMClearFields(4801,172026
+PetscErrorCode DMGetNumFields(4832,172630
+PetscErrorCode DMSetNumFields(4854,173073
+PetscErrorCode DMGetField(4888,173966
+PetscErrorCode DMSetField_Internal(4900,174449
+PetscErrorCode DMSetField(4929,175359
+PetscErrorCode DMAddField(4964,176930
+PetscErrorCode DMSetFieldAvoidTensor(4996,177881
+PetscErrorCode DMGetFieldAvoidTensor(5020,178641
+PetscErrorCode DMCopyFields(5043,179287
+PetscErrorCode DMGetAdjacency(5087,180801
+PetscErrorCode DMSetAdjacency(5128,182431
+PetscErrorCode DMGetBasicAdjacency(5167,183830
+PetscErrorCode DMSetBasicAdjacency(5203,185141
+PetscErrorCode DMCompleteBCLabels_Internal(5218,185536
+static PetscErrorCode DMDSEnlarge_Static(5304,188807
+PetscErrorCode DMGetNumDS(5339,189550
+PetscErrorCode DMClearDS(5360,189952
+PetscErrorCode DMGetDS(5392,190576
+PetscErrorCode DMGetCellDS(5424,191238
+PetscErrorCode DMGetRegionDS(5473,192654
+PetscErrorCode DMSetRegionDS(5517,193973
+PetscErrorCode DMGetRegionNumDS(5565,195459
+PetscErrorCode DMSetRegionNumDS(5604,196635
+PetscErrorCode DMFindRegionNum(5647,198064
+PetscErrorCode DMCreateFEDefault(5684,199088
+PetscErrorCode DMCreateDS(5720,200241
+PetscErrorCode DMComputeExactSolution(5959,208739
+PetscErrorCode DMTransferDS_Internal(6023,211172
+PetscErrorCode DMCopyDS(6077,213008
+PetscErrorCode DMCopyDisc(6128,214427
+PetscErrorCode DMGetDimension(6151,214839
+PetscErrorCode DMSetDimension(6173,215264
+PetscErrorCode DMGetDimPoints(6214,216381
+PetscErrorCode DMGetOutputDM(6246,217635
+PetscErrorCode DMGetOutputSequenceNumber(6301,219382
+PetscErrorCode DMSetOutputSequenceNumber(6332,220156
+PetscErrorCode DMOutputSequenceLoad(6363,221023
+PetscErrorCode DMGetUseNatural(6398,222087
+PetscErrorCode DMSetUseNatural(6423,222816
+PetscErrorCode DMCreateLabel(6445,223380
+PetscErrorCode DMCreateLabelAtIndex(6476,224217
+PetscErrorCode DMGetLabelValue(6532,225868
+PetscErrorCode DMSetLabelValue(6562,226641
+PetscErrorCode DMClearLabelValue(6593,227408
+PetscErrorCode DMGetLabelSize(6625,228258
+PetscErrorCode DMGetLabelIdIS(6656,228985
+PetscErrorCode DMGetStratumSize(6692,229843
+PetscErrorCode DMGetStratumIS(6724,230636
+PetscErrorCode DMSetStratumIS(6754,231402
+PetscErrorCode DMClearLabelStratum(6784,232168
+PetscErrorCode DMGetNumLabels(6812,232870
+PetscErrorCode DMGetLabelName(6847,233653
+PetscErrorCode DMHasLabel(6882,234569
+PetscErrorCode DMGetLabel(6925,235979
+PetscErrorCode DMGetLabelByNum(6964,236849
+PetscErrorCode DMAddLabel(6996,237611
+PetscErrorCode DMSetLabel(7042,239291
+PetscErrorCode DMRemoveLabel(7087,240720
+PetscErrorCode DMRemoveLabelBySelf(7137,242292
+PetscErrorCode DMGetLabelOutput(7180,243746
+PetscErrorCode DMSetLabelOutput(7217,244825
+PetscErrorCode DMCopyLabels(7258,246199
+PetscErrorCode DMCompareLabels(7346,249244
+PetscErrorCode DMSetLabelValue_Fast(7407,251470
+PetscErrorCode DMUniversalLabelCreate(7427,252220
+PetscErrorCode DMUniversalLabelDestroy(7526,255527
+PetscErrorCode DMUniversalLabelGetLabel(7540,256037
+PetscErrorCode DMUniversalLabelCreateLabels(7548,256223
+PetscErrorCode DMUniversalLabelSetLabelValue(7571,257025
+PetscErrorCode DMGetCoarseDM(7604,257838
+PetscErrorCode DMSetCoarseDM(7627,258362
+PetscErrorCode DMGetFineDM(7652,258965
+PetscErrorCode DMSetFineDM(7675,259450
+PetscErrorCode DMAddBoundary(7747,262587
+static PetscErrorCode DMPopulateBoundary(7780,263943
+PetscErrorCode DMIsBoundaryPoint(7820,264947
+PetscErrorCode DMProjectFunction(7877,266661
+PetscErrorCode DMProjectFunctionLocal(7924,268339
+PetscErrorCode DMProjectFunctionLabel(7967,270023
+PetscErrorCode DMProjectFunctionLabelLocal(8015,271994
+PetscErrorCode DMProjectFieldLocal(8079,275442
+PetscErrorCode DMProjectFieldLabelLocal(8149,279423
+PetscErrorCode DMProjectFieldLabel(8219,283533
+PetscErrorCode DMProjectBdFieldLabelLocal(8300,288052
+PetscErrorCode DMComputeL2Diff(8334,289672
+PetscErrorCode DMComputeL2GradientDiff(8368,290923
+PetscErrorCode DMComputeL2FieldDiff(8401,292208
+PetscErrorCode DMGetNeighbors(8429,293017
+PetscErrorCode MatFDColoringApply_AIJDM(8443,293538
+PetscErrorCode MatFDColoringUseDM(8478,294725
+PetscErrorCode DMGetCompatibility(8563,298286
+PetscErrorCode DMMonitorSet(8640,301086
+PetscErrorCode DMMonitorCancel(8679,302423
+PetscErrorCode DMMonitorSetFromOptions(8718,304035
+PetscErrorCode DMMonitor(8753,305371
+PetscErrorCode DMComputeError(8787,306343
+PetscErrorCode DMGetNumAuxiliaryVec(8869,309420
+PetscErrorCode DMGetAuxiliaryVec(8898,310214
+PetscErrorCode DMSetAuxiliaryVec(8931,311277
+PetscErrorCode DMGetAuxiliaryLabels(8970,312482
+PetscErrorCode DMCopyAuxiliaryVec(9010,313515
+PetscErrorCode DMPolytopeMatchOrientation(9045,314907
+PetscErrorCode DMPolytopeGetOrientation(9094,316525
+PetscErrorCode DMPolytopeMatchVertexOrientation(9130,318038
+PetscErrorCode DMPolytopeGetVertexOrientation(9179,319632
+PetscErrorCode DMPolytopeInCellTest(9205,320440
+
+src/dm/interface/dmcoordinates.c,1519
+dmcoordinates.c:^?dmcoordinates.c^A,1
+PetscErrorCode DMRestrictHook_Coordinates(6,180
+static PetscErrorCode DMSubDomainHook_Coordinates(28,950
+PetscErrorCode DMGetCoordinateDM(76,2942
+PetscErrorCode DMSetCoordinateDM(109,4013
+PetscErrorCode DMGetCellCoordinateDM(139,5009
+PetscErrorCode DMSetCellCoordinateDM(165,5894
+PetscErrorCode DMGetCoordinateDim(197,6800
+PetscErrorCode DMSetCoordinateDim(220,7457
+PetscErrorCode DMGetCoordinateSection(260,8377
+PetscErrorCode DMSetCoordinateSection(286,9063
+PetscErrorCode DMGetCellCoordinateSection(337,10564
+PetscErrorCode DMSetCellCoordinateSection(364,11408
+PetscErrorCode DMGetCoordinates(418,13142
+PetscErrorCode DMSetCoordinates(454,14308
+PetscErrorCode DMGetCellCoordinates(489,15466
+PetscErrorCode DMSetCellCoordinates(525,16675
+PetscErrorCode DMGetCoordinatesLocalSetUp(549,17376
+PetscErrorCode DMGetCoordinatesLocal(592,18886
+PetscErrorCode DMGetCoordinatesLocalNoncollective(620,19760
+PetscErrorCode DMGetCoordinatesLocalTuple(657,21272
+PetscErrorCode DMSetCoordinatesLocal(713,23407
+PetscErrorCode DMGetCellCoordinatesLocalSetUp(737,24109
+PetscErrorCode DMGetCellCoordinatesLocal(773,25291
+PetscErrorCode DMGetCellCoordinatesLocalNoncollective(798,26083
+PetscErrorCode DMSetCellCoordinatesLocal(828,27117
+PetscErrorCode DMGetCoordinateField(840,27503
+PetscErrorCode DMSetCoordinateField(852,27886
+PetscErrorCode DMGetLocalBoundingBox(882,28767
+PetscErrorCode DMGetBoundingBox(951,30992
+PetscErrorCode DMProjectCoordinates(988,32493
+PetscErrorCode DMLocatePoints(1108,37408
src/dm/interface/dmget.c,565
dmget.c:^?dmget.c^A,1
@@ -49614,6 +49614,20 @@
LOCDIR 4,128
MANSEC 5,153
+src/dm/impls/swarm/swarmpic_sort.c,581
+swarmpic_sort.c:^?swarmpic_sort.c^A,1
+int sort_CompareSwarmPoint(7,135
+PetscErrorCode DMSwarmSortApplyCellIndexSort(21,457
+PetscErrorCode DMSwarmSortCreate(28,650
+PetscErrorCode DMSwarmSortSetup(43,982
+PetscErrorCode DMSwarmSortDestroy(94,2647
+PetscErrorCode DMSwarmSortGetNumberOfPointsPerCell(126,3475
+PETSC_EXTERN PetscErrorCode DMSwarmSortGetPointsPerCell(163,5041
+PETSC_EXTERN PetscErrorCode DMSwarmSortGetAccess(226,8126
+PETSC_EXTERN PetscErrorCode DMSwarmSortRestoreAccess(284,10248
+PETSC_EXTERN PetscErrorCode DMSwarmSortGetIsValid(310,11012
+PETSC_EXTERN PetscErrorCode DMSwarmSortGetSizes(339,11737
+
src/dm/impls/swarm/swarm.c,3971
swarm.c:^?swarm.c^A,1
#define PETSCDM_DLL1,0
@@ -49654,39 +49668,69 @@
PetscErrorCode DMSwarmCreateLocalVectorFromField(716,29208
PetscErrorCode DMSwarmDestroyLocalVectorFromField(741,29860
PetscErrorCode DMSwarmInitializeFieldRegister(764,30517
-PetscErrorCode DMSwarmFinalizeFieldRegister(793,31456
-PetscErrorCode DMSwarmSetLocalSizes(817,32073
-PetscErrorCode DMSwarmSetCellDM(845,32833
-PetscErrorCode DMSwarmGetCellDM(869,33251
-PetscErrorCode DMSwarmGetLocalSize(893,33710
-PetscErrorCode DMSwarmGetSize(920,34301
-PetscErrorCode DMSwarmRegisterPetscDatatypeField(949,35191
-PetscErrorCode DMSwarmRegisterUserStructField(994,37428
-PetscErrorCode DMSwarmRegisterUserDatatypeField(1022,38318
-PetscErrorCode DMSwarmGetField(1059,39426
-PetscErrorCode DMSwarmRestoreField(1095,40499
-PetscErrorCode DMSwarmAddPoint(1122,41169
-PetscErrorCode DMSwarmAddNPoints(1150,41835
-PetscErrorCode DMSwarmRemovePoint(1176,42521
-PetscErrorCode DMSwarmRemovePointAtIndex(1200,43072
-PetscErrorCode DMSwarmCopyPoint(1225,43706
-PetscErrorCode DMSwarmMigrate_Basic(1235,43985
-PetscErrorCode DMSwarmMigrate(1260,44722
-PetscErrorCode DMSwarmCollectViewCreate(1315,46470
-PetscErrorCode DMSwarmCollectViewDestroy(1354,47727
-PetscErrorCode DMSwarmSetUpPIC(1365,48123
-PetscErrorCode DMSwarmSetPointCoordinatesRandom(1396,49219
-PetscErrorCode DMSwarmSetType(1458,51517
-PetscErrorCode DMSetup_Swarm(1468,51770
-PetscErrorCode DMDestroy_Swarm(1520,54194
-PetscErrorCode DMSwarmView_Draw(1532,54540
-static PetscErrorCode DMView_Swarm_Ascii(1562,55622
-PetscErrorCode DMView_Swarm(1611,57881
-PETSC_EXTERN PetscErrorCode DMSwarmGetCellSwarm(1671,59925
-PETSC_EXTERN PetscErrorCode DMSwarmRestoreCellSwarm(1719,61731
-static PetscErrorCode DMInitialize_Swarm(1739,62543
-PETSC_INTERN PetscErrorCode DMClone_Swarm(1775,64077
-PETSC_EXTERN PetscErrorCode DMCreate_Swarm(1839,66891
+PetscErrorCode DMSwarmFinalizeFieldRegister(793,31457
+PetscErrorCode DMSwarmSetLocalSizes(817,32074
+PetscErrorCode DMSwarmSetCellDM(845,32834
+PetscErrorCode DMSwarmGetCellDM(869,33252
+PetscErrorCode DMSwarmGetLocalSize(893,33711
+PetscErrorCode DMSwarmGetSize(920,34302
+PetscErrorCode DMSwarmRegisterPetscDatatypeField(949,35192
+PetscErrorCode DMSwarmRegisterUserStructField(994,37429
+PetscErrorCode DMSwarmRegisterUserDatatypeField(1022,38319
+PetscErrorCode DMSwarmGetField(1059,39427
+PetscErrorCode DMSwarmRestoreField(1095,40500
+PetscErrorCode DMSwarmAddPoint(1122,41170
+PetscErrorCode DMSwarmAddNPoints(1150,41836
+PetscErrorCode DMSwarmRemovePoint(1176,42522
+PetscErrorCode DMSwarmRemovePointAtIndex(1200,43073
+PetscErrorCode DMSwarmCopyPoint(1225,43707
+PetscErrorCode DMSwarmMigrate_Basic(1235,43986
+PetscErrorCode DMSwarmMigrate(1260,44723
+PetscErrorCode DMSwarmCollectViewCreate(1315,46471
+PetscErrorCode DMSwarmCollectViewDestroy(1354,47728
+PetscErrorCode DMSwarmSetUpPIC(1365,48124
+PetscErrorCode DMSwarmSetPointCoordinatesRandom(1396,49220
+PetscErrorCode DMSwarmSetType(1458,51518
+PetscErrorCode DMSetup_Swarm(1468,51771
+PetscErrorCode DMDestroy_Swarm(1520,54195
+PetscErrorCode DMSwarmView_Draw(1532,54541
+static PetscErrorCode DMView_Swarm_Ascii(1562,55623
+PetscErrorCode DMView_Swarm(1611,57882
+PETSC_EXTERN PetscErrorCode DMSwarmGetCellSwarm(1671,59926
+PETSC_EXTERN PetscErrorCode DMSwarmRestoreCellSwarm(1719,61732
+static PetscErrorCode DMInitialize_Swarm(1739,62544
+PETSC_INTERN PetscErrorCode DMClone_Swarm(1775,64078
+PETSC_EXTERN PetscErrorCode DMCreate_Swarm(1839,66892
+
+src/dm/impls/swarm/data_ex.c,1474
+data_ex.c:^?data_ex.c^A,1
+const char *status_names[status_names76,2041
+PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerTopologySetup;78,2112
+PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerBegin;79,2175
+PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerEnd;80,2230
+PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerSendCount;81,2283
+PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerPack;82,2342
+PetscErrorCode DMSwarmDataExCreate(84,2397
+PetscErrorCode DMSwarmDataExView(130,3581
+PetscErrorCode DMSwarmDataExDestroy(164,5706
+PetscErrorCode DMSwarmDataExTopologyInitialize(185,6597
+PetscErrorCode DMSwarmDataExTopologyAddNeighbour(200,7091
+static void _get_tags(262,9229
+PetscErrorCode _DMSwarmDataExCompleteCommunicationMap(275,9530
+PetscErrorCode DMSwarmDataExTopologyFinalize(334,12089
+PetscErrorCode _DMSwarmDataExConvertProcIdToLocalIndex(373,14146
+PetscErrorCode DMSwarmDataExInitializeSendCount(389,14499
+PetscErrorCode DMSwarmDataExAddToSendCount(404,15015
+PetscErrorCode DMSwarmDataExFinalizeSendCount(419,15858
+PetscErrorCode _DMSwarmDataExInitializeTmpStorage(437,16445
+PetscErrorCode DMSwarmDataExPackInitialize(458,16968
+PetscErrorCode DMSwarmDataExPackData(500,18733
+PetscErrorCode DMSwarmDataExPackFinalize(527,20429
+PetscErrorCode DMSwarmDataExBegin(559,22231
+PetscErrorCode DMSwarmDataExEnd(584,23615
+PetscErrorCode DMSwarmDataExGetSendData(617,25131
+PetscErrorCode DMSwarmDataExGetRecvData(626,25470
+PetscErrorCode DMSwarmDataExTopologyGetNeighbours(635,25814
src/dm/impls/swarm/data_bucket.c,2668
data_bucket.c:^?data_bucket.c^A,1
@@ -49750,20 +49794,6 @@
PETSC_EXTERN PetscErrorCode DMSwarmViewFieldsXDMF(338,13891
PETSC_EXTERN PetscErrorCode DMSwarmViewXDMF(396,16103
-src/dm/impls/swarm/swarmpic_sort.c,581
-swarmpic_sort.c:^?swarmpic_sort.c^A,1
-int sort_CompareSwarmPoint(7,135
-PetscErrorCode DMSwarmSortApplyCellIndexSort(21,457
-PetscErrorCode DMSwarmSortCreate(28,650
-PetscErrorCode DMSwarmSortSetup(43,982
-PetscErrorCode DMSwarmSortDestroy(94,2647
-PetscErrorCode DMSwarmSortGetNumberOfPointsPerCell(126,3475
-PETSC_EXTERN PetscErrorCode DMSwarmSortGetPointsPerCell(163,5042
-PETSC_EXTERN PetscErrorCode DMSwarmSortGetAccess(226,8127
-PETSC_EXTERN PetscErrorCode DMSwarmSortRestoreAccess(284,10249
-PETSC_EXTERN PetscErrorCode DMSwarmSortGetIsValid(310,11013
-PETSC_EXTERN PetscErrorCode DMSwarmSortGetSizes(339,11738
-
src/dm/impls/swarm/swarmpic_plex.c,682
swarmpic_plex.c:^?swarmpic_plex.c^A,1
static PetscErrorCode private_PetscFECreateDefault_scalar_pk1(8,218
@@ -49866,36 +49896,6 @@
MPI_Status *_stats;_stats35,1264
MPI_Request *_requests;_requests36,1295
-src/dm/impls/swarm/data_ex.c,1474
-data_ex.c:^?data_ex.c^A,1
-const char *status_names[status_names76,2040
-PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerTopologySetup;78,2111
-PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerBegin;79,2174
-PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerEnd;80,2229
-PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerSendCount;81,2282
-PETSC_EXTERN PetscLogEvent DMSWARM_DataExchangerPack;82,2341
-PetscErrorCode DMSwarmDataExCreate(84,2396
-PetscErrorCode DMSwarmDataExView(130,3580
-PetscErrorCode DMSwarmDataExDestroy(164,5705
-PetscErrorCode DMSwarmDataExTopologyInitialize(185,6596
-PetscErrorCode DMSwarmDataExTopologyAddNeighbour(200,7090
-static void _get_tags(262,9228
-PetscErrorCode _DMSwarmDataExCompleteCommunicationMap(275,9529
-PetscErrorCode DMSwarmDataExTopologyFinalize(334,12088
-PetscErrorCode _DMSwarmDataExConvertProcIdToLocalIndex(373,14145
-PetscErrorCode DMSwarmDataExInitializeSendCount(389,14498
-PetscErrorCode DMSwarmDataExAddToSendCount(404,15014
-PetscErrorCode DMSwarmDataExFinalizeSendCount(419,15857
-PetscErrorCode _DMSwarmDataExInitializeTmpStorage(437,16444
-PetscErrorCode DMSwarmDataExPackInitialize(458,16967
-PetscErrorCode DMSwarmDataExPackData(500,18732
-PetscErrorCode DMSwarmDataExPackFinalize(527,20428
-PetscErrorCode DMSwarmDataExBegin(559,22230
-PetscErrorCode DMSwarmDataExEnd(584,23614
-PetscErrorCode DMSwarmDataExGetSendData(617,25130
-PetscErrorCode DMSwarmDataExGetRecvData(626,25469
-PetscErrorCode DMSwarmDataExTopologyGetNeighbours(635,25813
-
src/dm/impls/swarm/data_bucket.h,1032
data_bucket.h:^?data_bucket.h^A,1
#define PETSC_DMSWARM_DATA_BUCKET_H2,36
@@ -50111,77 +50111,77 @@
PETSC_EXTERN void dmswarmgetfield_(15,468
PETSC_EXTERN void dmswarmrestorefield_(28,1016
-src/dm/impls/stag/stagutils.c,2143
+src/dm/impls/stag/stagutils.c,2145
stagutils.c:^?stagutils.c^A,1
-PetscErrorCode DMStagGetBoundaryTypes(22,459
-static PetscErrorCode DMStagGetProductCoordinateArrays_Private(36,1033
-PetscErrorCode DMStagGetProductCoordinateArrays(122,4651
-PetscErrorCode DMStagGetProductCoordinateArraysRead(146,5411
-PETSC_EXTERN PetscErrorCode DMStagGetProductCoordinateLocationSlot(181,6719
-PetscErrorCode DMStagGetCorners(253,9859
-PetscErrorCode DMStagGetDOF(289,11309
-PetscErrorCode DMStagGetGhostCorners(325,12440
-PetscErrorCode DMStagGetGlobalSizes(358,13341
-PetscErrorCode DMStagGetIsFirstRank(388,14165
-PetscErrorCode DMStagGetIsLastRank(419,15132
-PetscErrorCode DMStagGetLocalSizes(450,16074
-PetscErrorCode DMStagGetNumRanks(481,16964
-PetscErrorCode DMStagGetEntries(514,18020
-PetscErrorCode DMStagGetEntriesLocal(545,18932
-PetscErrorCode DMStagGetEntriesPerElement(574,19778
-PetscErrorCode DMStagGetStencilType(599,20482
-PetscErrorCode DMStagGetStencilWidth(624,21071
-PetscErrorCode DMStagGetOwnershipRanges(659,22309
-PetscErrorCode DMStagCreateCompatibleDMStag(694,23433
-PetscErrorCode DMStagGetLocationSlot(726,24437
-PetscErrorCode DMStagMigrateVec(762,25907
-PetscErrorCode DMStagPopulateLocalToGlobalInjective(894,32173
-static PetscErrorCode DMStagRestoreProductCoordinateArrays_Private(919,32920
-PetscErrorCode DMStagRestoreProductCoordinateArrays(984,35007
-PetscErrorCode DMStagRestoreProductCoordinateArraysRead(1006,35609
-PetscErrorCode DMStagSetBoundaryTypes(1029,36373
-PetscErrorCode DMStagSetCoordinateDMType(1060,37657
-PetscErrorCode DMStagSetDOF(1087,38358
-PetscErrorCode DMStagSetNumRanks(1127,40021
-PetscErrorCode DMStagSetStencilType(1161,41730
-PetscErrorCode DMStagSetStencilWidth(1189,42618
-PetscErrorCode DMStagSetGlobalSizes(1218,43615
-PetscErrorCode DMStagSetOwnershipRanges(1252,45074
-PetscErrorCode DMStagSetUniformCoordinates(1300,47249
-PetscErrorCode DMStagSetUniformCoordinatesExplicit(1341,49185
-PetscErrorCode DMStagSetUniformCoordinatesProduct(1396,51500
-PetscErrorCode DMStagVecGetArray(1504,55876
-PetscErrorCode DMStagVecGetArrayRead(1553,57803
-PetscErrorCode DMStagVecRestoreArray(1597,59446
-PetscErrorCode DMStagVecRestoreArrayRead(1641,61123
+PetscErrorCode DMStagGetBoundaryTypes(24,665
+static PetscErrorCode DMStagGetProductCoordinateArrays_Private(38,1239
+PetscErrorCode DMStagGetProductCoordinateArrays(127,5084
+PetscErrorCode DMStagGetProductCoordinateArraysRead(154,6049
+PETSC_EXTERN PetscErrorCode DMStagGetProductCoordinateLocationSlot(189,7383
+PetscErrorCode DMStagGetCorners(261,10543
+PetscErrorCode DMStagGetDOF(297,12013
+PetscErrorCode DMStagGetGhostCorners(333,13163
+PetscErrorCode DMStagGetGlobalSizes(368,14174
+PetscErrorCode DMStagGetIsFirstRank(400,15118
+PetscErrorCode DMStagGetIsLastRank(432,16184
+PetscErrorCode DMStagGetLocalSizes(464,17250
+PetscErrorCode DMStagGetNumRanks(493,18131
+PetscErrorCode DMStagGetEntries(526,19206
+PetscErrorCode DMStagGetEntriesLocal(557,20137
+PetscErrorCode DMStagGetEntriesPerElement(586,21002
+PetscErrorCode DMStagGetStencilType(611,21726
+PetscErrorCode DMStagGetStencilWidth(636,22334
+PetscErrorCode DMStagGetOwnershipRanges(671,23594
+PetscErrorCode DMStagCreateCompatibleDMStag(709,24931
+PetscErrorCode DMStagGetLocationSlot(741,25955
+PetscErrorCode DMStagMigrateVec(777,27452
+PetscErrorCode DMStagPopulateLocalToGlobalInjective(909,33750
+static PetscErrorCode DMStagRestoreProductCoordinateArrays_Private(934,34497
+PetscErrorCode DMStagRestoreProductCoordinateArrays(1002,36716
+PetscErrorCode DMStagRestoreProductCoordinateArraysRead(1024,37427
+PetscErrorCode DMStagSetBoundaryTypes(1049,38361
+PetscErrorCode DMStagSetCoordinateDMType(1080,39665
+PetscErrorCode DMStagSetDOF(1110,40602
+PetscErrorCode DMStagSetNumRanks(1152,42363
+PetscErrorCode DMStagSetStencilType(1186,44092
+PetscErrorCode DMStagSetStencilWidth(1214,44999
+PetscErrorCode DMStagSetGlobalSizes(1245,46127
+PetscErrorCode DMStagSetOwnershipRanges(1281,47710
+PetscErrorCode DMStagSetUniformCoordinates(1334,50191
+PetscErrorCode DMStagSetUniformCoordinatesExplicit(1380,52441
+PetscErrorCode DMStagSetUniformCoordinatesProduct(1440,55070
+PetscErrorCode DMStagVecGetArray(1548,59470
+PetscErrorCode DMStagVecGetArrayRead(1597,61415
+PetscErrorCode DMStagVecRestoreArray(1641,63077
+PetscErrorCode DMStagVecRestoreArrayRead(1685,64773
src/dm/impls/stag/stagstencil.c,563
stagstencil.c:^?stagstencil.c^A,1
const char *const DMStagStencilTypes[DMStagStencilTypes5,210
const char *const DMStagStencilLocations[DMStagStencilLocations8,402
-PetscErrorCode DMStagCreateISFromStencils(30,1353
-PetscErrorCode DMStagGetLocationDOF(139,5666
-PETSC_INTERN PetscErrorCode DMStagStencilLocationCanonicalize(232,8150
-PetscErrorCode DMStagMatGetValuesStencil(306,10149
-PetscErrorCode DMStagMatSetValuesStencil(345,11568
-PetscErrorCode DMStagStencilToIndexLocal(386,13029
-PetscErrorCode DMStagVecGetValuesStencil(449,15351
-PetscErrorCode DMStagVecSetValuesStencil(493,17339
+PetscErrorCode DMStagCreateISFromStencils(30,1375
+PetscErrorCode DMStagGetLocationDOF(139,5710
+PETSC_INTERN PetscErrorCode DMStagStencilLocationCanonicalize(232,8194
+PetscErrorCode DMStagMatGetValuesStencil(306,10213
+PetscErrorCode DMStagMatSetValuesStencil(345,11652
+PetscErrorCode DMStagStencilToIndexLocal(386,13137
+PetscErrorCode DMStagVecGetValuesStencil(449,15479
+PetscErrorCode DMStagVecSetValuesStencil(493,17498
src/dm/impls/stag/stagmulti.c,534
stagmulti.c:^?stagmulti.c^A,1
-PetscErrorCode DMStagRestrictSimple(25,708
-PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation1d_a_b_Private(49,1402
-PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation2d_0_a_b_Private(123,4352
-PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation3d_0_0_a_b_Private(330,11931
-PETSC_INTERN PetscErrorCode DMStagPopulateRestriction1d_a_b_Private(863,34232
-PETSC_INTERN PetscErrorCode DMStagPopulateRestriction2d_0_a_b_Private(939,37256
-PETSC_INTERN PetscErrorCode DMStagPopulateRestriction3d_0_0_a_b_Private(1061,41943
+PetscErrorCode DMStagRestrictSimple(24,759
+PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation1d_a_b_Private(48,1453
+PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation2d_0_a_b_Private(122,4403
+PETSC_INTERN PetscErrorCode DMStagPopulateInterpolation3d_0_0_a_b_Private(329,11982
+PETSC_INTERN PetscErrorCode DMStagPopulateRestriction1d_a_b_Private(862,34283
+PETSC_INTERN PetscErrorCode DMStagPopulateRestriction2d_0_a_b_Private(938,37307
+PETSC_INTERN PetscErrorCode DMStagPopulateRestriction3d_0_0_a_b_Private(1060,41994
src/dm/impls/stag/stagintern.c,93
stagintern.c:^?stagintern.c^A,1
-PetscErrorCode DMStagDuplicateWithoutSetup(33,1306
-PetscErrorCode DMStagInitialize(65,2751
+PetscErrorCode DMStagDuplicateWithoutSetup(34,1337
+PetscErrorCode DMStagInitialize(66,2782
src/dm/impls/stag/stagda.c,278
stagda.c:^?stagda.c^A,1
@@ -50189,46 +50189,46 @@
static PetscErrorCode DMStagDMDAGetExtraPoints(133,5445
static PetscErrorCode DMStagMigrateVecDMDA(183,7282
static PetscErrorCode DMStagTransferCoordinatesToDMDA(301,12130
-PetscErrorCode DMStagVecSplitToDMDA(439,18764
+PetscErrorCode DMStagVecSplitToDMDA(436,18694
src/dm/impls/stag/stag3d.c,848
stag3d.c:^?stag3d.c^A,1
-PETSC_EXTERN PetscErrorCode DMStagCreate3d(47,2273
-PETSC_INTERN PetscErrorCode DMStagRestrictSimple_3d(56,2909
-PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_3d(160,10109
-PETSC_INTERN PetscErrorCode DMSetUp_Stag_3d(251,14806
-static PetscErrorCode DMStagSetUpBuildRankGrid_3d(423,22874
-static PetscErrorCode DMStagSetUpBuildNeighbors_3d(554,28261
-static PetscErrorCode DMStagSetUpBuildGlobalOffsets_3d(699,34750
-static PetscErrorCode DMStagSetUpBuildScatterPopulateIdx_3d(793,39210
-static PetscErrorCode DMStagSetUpBuildScatter_3d(925,47211
-static PetscErrorCode DMStagSetUpBuildL2G_3d(1613,95855
-static PetscErrorCode DMStagComputeLocationOffsets_3d(3157,189103
-PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_3d(3196,192156
-PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_3D_AIJ_Assemble(3253,195944
+PETSC_EXTERN PetscErrorCode DMStagCreate3d(47,2297
+PETSC_INTERN PetscErrorCode DMStagRestrictSimple_3d(56,2933
+PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_3d(160,10133
+PETSC_INTERN PetscErrorCode DMSetUp_Stag_3d(251,14830
+static PetscErrorCode DMStagSetUpBuildRankGrid_3d(423,22898
+static PetscErrorCode DMStagSetUpBuildNeighbors_3d(554,28285
+static PetscErrorCode DMStagSetUpBuildGlobalOffsets_3d(699,34774
+static PetscErrorCode DMStagSetUpBuildScatterPopulateIdx_3d(793,39234
+static PetscErrorCode DMStagSetUpBuildScatter_3d(925,47235
+static PetscErrorCode DMStagSetUpBuildL2G_3d(1613,95879
+static PetscErrorCode DMStagComputeLocationOffsets_3d(3157,189127
+PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_3d(3196,192180
+PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_3D_AIJ_Assemble(3253,195968
src/dm/impls/stag/stag2d.c,657
stag2d.c:^?stag2d.c^A,1
-PETSC_EXTERN PetscErrorCode DMStagCreate2d(43,2000
-PETSC_INTERN PetscErrorCode DMStagRestrictSimple_2d(52,2566
-PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_2d(118,6832
-PETSC_INTERN PetscErrorCode DMSetUp_Stag_2d(183,9812
-static PetscErrorCode DMStagSetUpBuildRankGrid_2d(978,54793
-static PetscErrorCode DMStagSetUpBuildNeighbors_2d(1028,57207
-static PetscErrorCode DMStagSetUpBuildGlobalOffsets_2d(1091,59670
-static PetscErrorCode DMStagComputeLocationOffsets_2d(1134,61497
-PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_2d(1154,62618
-PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_2D_AIJ_Assemble(1236,67294
+PETSC_EXTERN PetscErrorCode DMStagCreate2d(43,2024
+PETSC_INTERN PetscErrorCode DMStagRestrictSimple_2d(52,2590
+PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_2d(118,6856
+PETSC_INTERN PetscErrorCode DMSetUp_Stag_2d(183,9836
+static PetscErrorCode DMStagSetUpBuildRankGrid_2d(978,54818
+static PetscErrorCode DMStagSetUpBuildNeighbors_2d(1028,57232
+static PetscErrorCode DMStagSetUpBuildGlobalOffsets_2d(1091,59695
+static PetscErrorCode DMStagComputeLocationOffsets_2d(1134,61522
+PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_2d(1154,62643
+PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_2D_AIJ_Assemble(1236,67320
src/dm/impls/stag/stag1d.c,463
stag1d.c:^?stag1d.c^A,1
-PETSC_EXTERN PetscErrorCode DMStagCreate1d(39,1563
-PETSC_INTERN PetscErrorCode DMStagRestrictSimple_1d(51,2115
-PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_1d(104,5492
-PETSC_INTERN PetscErrorCode DMSetUp_Stag_1d(150,7301
-static PetscErrorCode DMStagComputeLocationOffsets_1d(465,21477
-PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_1d(478,21984
-PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_1D_AIJ_Assemble(519,23805
+PETSC_EXTERN PetscErrorCode DMStagCreate1d(39,1585
+PETSC_INTERN PetscErrorCode DMStagRestrictSimple_1d(51,2137
+PETSC_INTERN PetscErrorCode DMStagSetUniformCoordinatesExplicit_1d(104,5514
+PETSC_INTERN PetscErrorCode DMSetUp_Stag_1d(150,7323
+static PetscErrorCode DMStagComputeLocationOffsets_1d(465,21499
+PETSC_INTERN PetscErrorCode DMStagPopulateLocalToGlobalInjective_1d(478,22006
+PETSC_INTERN PetscErrorCode DMCreateMatrix_Stag_1D_AIJ_Assemble(519,23827
src/dm/impls/stag/stag.c,1271
stag.c:^?stag.c^A,1
@@ -50254,7 +50254,7 @@
static PetscErrorCode DMGetNeighbors_Stag(769,31044
static PetscErrorCode DMView_Stag(793,31599
static PetscErrorCode DMSetFromOptions_Stag(867,36394
-PETSC_EXTERN PetscErrorCode DMCreate_Stag(921,40648
+PETSC_EXTERN PetscErrorCode DMCreate_Stag(921,40661
src/dm/impls/stag/makefile,117
makefile:^?makefile^A,1
@@ -50267,6 +50267,57 @@
SUBMANSEC=9,305
LOCDIR 10,323
+src/dm/impls/stag/tutorials/ex8.c,146
+ex8.c:^?ex8.c^A,1
+static char help[help1,0
+int main(10,313
+static PetscErrorCode AssembleSystem1DVertexCentered(64,2141
+PetscErrorCode AssembleSystem(144,4379
+
+src/dm/impls/stag/tutorials/ex3.c,1243
+ex3.c:^?ex3.c^A,1
+static char help[help1,0
+#define BACK_DOWN_LEFT 32,1138
+#define BACK_DOWN 33,1185
+#define BACK_DOWN_RIGHT 34,1227
+#define BACK_LEFT 35,1275
+#define BACK 36,1317
+#define BACK_RIGHT 37,1354
+#define BACK_UP_LEFT 38,1397
+#define BACK_UP 39,1442
+#define BACK_UP_RIGHT 40,1482
+#define DOWN_LEFT 41,1528
+#define DOWN 42,1570
+#define DOWN_RIGHT 43,1607
+#define LEFT 44,1650
+#define ELEMENT 45,1687
+#define RIGHT 46,1727
+#define UP_LEFT 47,1765
+#define UP 48,1805
+#define UP_RIGHT 49,1840
+#define FRONT_DOWN_LEFT 50,1881
+#define FRONT_DOWN 51,1929
+#define FRONT_DOWN_RIGHT 52,1972
+#define FRONT_LEFT 53,2021
+#define FRONT 54,2064
+#define FRONT_RIGHT 55,2102
+#define FRONT_UP_LEFT 56,2146
+#define FRONT_UP 57,2192
+#define FRONT_UP_RIGHT 58,2233
+static PetscScalar uxRef(72,2863
+static PetscScalar uyRef(76,3007
+static PetscScalar uzRef(80,3151
+static PetscScalar pRef(84,3269
+static PetscScalar fx(88,3434
+static PetscScalar fy(92,3571
+static PetscScalar fz(96,3702
+static PetscScalar g(100,3817
+int main(105,3932
+static PetscErrorCode CreateSystem(166,6132
+static PetscErrorCode AttachNullspace(1771,62865
+static PetscErrorCode CreateReferenceSolution(1794,63789
+static PetscErrorCode CheckSolution(1841,66602
+
src/dm/impls/stag/tutorials/ex4.c,3207
ex4.c:^?ex4.c^A,1
static char help[help1,0
@@ -50349,13 +50400,6 @@
LOCDIR 3,37
MANSEC 4,84
-src/dm/impls/stag/tutorials/ex8.c,146
-ex8.c:^?ex8.c^A,1
-static char help[help1,0
-int main(10,313
-static PetscErrorCode AssembleSystem1DVertexCentered(64,2141
-PetscErrorCode AssembleSystem(144,4378
-
src/dm/impls/stag/tutorials/ex6.c,1248
ex6.c:^?ex6.c^A,1
static const char help[help1,0
@@ -50391,50 +50435,6 @@
static PetscErrorCode DumpStress(778,40629
static PetscErrorCode DumpVelocity(825,42478
-src/dm/impls/stag/tutorials/ex3.c,1243
-ex3.c:^?ex3.c^A,1
-static char help[help1,0
-#define BACK_DOWN_LEFT 32,1137
-#define BACK_DOWN 33,1184
-#define BACK_DOWN_RIGHT 34,1226
-#define BACK_LEFT 35,1274
-#define BACK 36,1316
-#define BACK_RIGHT 37,1353
-#define BACK_UP_LEFT 38,1396
-#define BACK_UP 39,1441
-#define BACK_UP_RIGHT 40,1481
-#define DOWN_LEFT 41,1527
-#define DOWN 42,1569
-#define DOWN_RIGHT 43,1606
-#define LEFT 44,1649
-#define ELEMENT 45,1686
-#define RIGHT 46,1726
-#define UP_LEFT 47,1764
-#define UP 48,1804
-#define UP_RIGHT 49,1839
-#define FRONT_DOWN_LEFT 50,1880
-#define FRONT_DOWN 51,1928
-#define FRONT_DOWN_RIGHT 52,1971
-#define FRONT_LEFT 53,2020
-#define FRONT 54,2063
-#define FRONT_RIGHT 55,2101
-#define FRONT_UP_LEFT 56,2145
-#define FRONT_UP 57,2191
-#define FRONT_UP_RIGHT 58,2232
-static PetscScalar uxRef(72,2862
-static PetscScalar uyRef(76,3006
-static PetscScalar uzRef(80,3150
-static PetscScalar pRef(84,3268
-static PetscScalar fx(88,3433
-static PetscScalar fy(92,3570
-static PetscScalar fz(96,3701
-static PetscScalar g(100,3816
-int main(105,3931
-static PetscErrorCode CreateSystem(166,6131
-static PetscErrorCode AttachNullspace(1771,62864
-static PetscErrorCode CreateReferenceSolution(1794,63788
-static PetscErrorCode CheckSolution(1841,66601
-
src/dm/impls/stag/tutorials/ex2.c,654
ex2.c:^?ex2.c^A,1
static char help[help1,0
@@ -50907,6 +50907,513 @@
SUBMANSEC=9,226
LOCDIR 10,247
+src/dm/impls/plex/plexsection.c,393
+plexsection.c:^?plexsection.c^A,1
+static PetscErrorCode DMPlexCreateSectionFields(4,135
+static PetscErrorCode DMPlexCreateSectionDof(89,3546
+static PetscErrorCode DMPlexCreateSectionBCDof(194,7242
+static PetscErrorCode DMPlexCreateSectionBCIndicesField(270,10157
+static PetscErrorCode DMPlexCreateSectionBCIndices(356,13659
+PetscErrorCode DMPlexCreateSection(430,16618
+PetscErrorCode DMCreateLocalSection_Plex(450,17602
+
+src/dm/impls/plex/plexinterpolate.c,1897
+plexinterpolate.c:^?plexinterpolate.c^A,1
+const char *const DMPlexInterpolatedFlags[DMPlexInterpolatedFlags5,143
+typedef struct _PetscHashIJKLKey 11,336
+ PetscInt i,12,371
+ PetscInt i, j,12,371
+ PetscInt i, j, k,12,371
+ PetscInt i, j, k, l;12,371
+} PetscHashIJKLKey;13,394
+#define PetscHashIJKLKeyHash(15,415
+#define PetscHashIJKLKeyEqual(17,595
+PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(19,730
+typedef struct _PetscHashIJKLRemoteKey 23,971
+ PetscSFNode i,24,1012
+ PetscSFNode i, j,24,1012
+ PetscSFNode i, j, k,24,1012
+ PetscSFNode i, j, k, l;24,1012
+} PetscHashIJKLRemoteKey;25,1038
+#define PetscHashIJKLRemoteKeyHash(27,1065
+#define PetscHashIJKLRemoteKeyEqual(30,1339
+PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(33,1672
+PetscErrorCode DMPlexGetRawFaces_Internal(56,2393
+PetscErrorCode DMPlexRestoreRawFaces_Internal(474,14434
+static PetscErrorCode DMPlexInterpolateFaces_Internal(484,14991
+static PetscErrorCode SortRmineRremoteByRemote_Private(704,25068
+PetscErrorCode DMPlexOrientInterface_Internal(728,26014
+static PetscErrorCode IntArrayViewFromOptions(858,33003
+static PetscErrorCode SFNodeArrayViewFromOptions(874,33706
+static PetscErrorCode DMPlexMapToLocalPoint(894,34628
+static PetscErrorCode DMPlexMapToGlobalPoint(921,35456
+static PetscErrorCode DMPlexPointIsShared(949,36425
+static PetscErrorCode DMPlexConeIsShared(971,37097
+static PetscErrorCode DMPlexGetConeMinimum(990,37648
+static PetscErrorCode DMPlexAddSharedFace_Private(1019,38552
+PetscErrorCode DMPlexInterpolatePointSF(1110,42880
+PetscErrorCode DMPlexInterpolate(1464,62524
+PetscErrorCode DMPlexCopyCoordinates(1539,65542
+PetscErrorCode DMPlexUninterpolate(1688,71783
+static PetscErrorCode DMPlexIsInterpolated_Internal(1792,76142
+PetscErrorCode DMPlexIsInterpolated(1870,78706
+PetscErrorCode DMPlexIsInterpolatedCollective(1919,80709
+
+src/dm/impls/plex/plexgmsh.c,5030
+plexgmsh.c:^?plexgmsh.c^A,1
+#define PETSCDM_DLL1,0
+#define GMSH_LEXORDER_ITEM(7,166
+static int *GmshLexOrder_QUA_2_Serendipity(GmshLexOrder_QUA_2_Serendipity16,493
+static int *GmshLexOrder_HEX_2_Serendipity(GmshLexOrder_HEX_2_Serendipity37,921
+#define GMSH_LEXORDER_LIST(77,1705
+GMSH_LEXORDER_ITEM(89,2027
+ GMSH_VTX 99,2238
+ GMSH_SEG 100,2264
+ GMSH_TRI 101,2290
+ GMSH_QUA 102,2316
+ GMSH_TET 103,2342
+ GMSH_HEX 104,2368
+ GMSH_PRI 105,2394
+ GMSH_PYR 106,2420
+ GMSH_NUM_POLYTOPES 107,2446
+} GmshPolytopeType;108,2471
+ int cellType;111,2509
+ int polytope;112,2525
+ int dim;113,2541
+ int order;114,2552
+ int numVerts;115,2565
+ int numNodes;116,2581
+ int *(*lexorder)lexorder117,2597
+} GmshCellInfo;118,2623
+#define GmshCellEntry(120,2640
+static const GmshCellInfo GmshCellTable[GmshCellTable125,2846
+static GmshCellInfo GmshCellMap[GmshCellMap170,5393
+static PetscErrorCode GmshCellInfoSetUp(172,5432
+#define GmshCellTypeCheck(193,5989
+ PetscViewer viewer;198,6522
+ int fileFormat;199,6544
+ int dataSize;200,6570
+ PetscBool binary;201,6594
+ PetscBool byteSwap;202,6616
+ size_t wlen;203,6640
+ void *wbuf;wbuf204,6660
+ size_t slen;205,6680
+ void *sbuf;sbuf206,6700
+ PetscInt *nbuf;nbuf207,6720
+ PetscInt nodeStart;208,6740
+ PetscInt nodeEnd;209,6765
+ PetscInt *nodeMap;nodeMap210,6788
+} GmshFile;211,6811
+static PetscErrorCode GmshBufferGet(213,6824
+static PetscErrorCode GmshBufferSizeGet(227,7187
+static PetscErrorCode GmshRead(242,7587
+static PetscErrorCode GmshReadString(250,7871
+static PetscErrorCode GmshMatch(257,8080
+static PetscErrorCode GmshExpect(264,8313
+static PetscErrorCode GmshReadSection(274,8662
+static PetscErrorCode GmshReadEndSection(292,9142
+static PetscErrorCode GmshReadSize(300,9401
+static PetscErrorCode GmshReadInt(327,10406
+static PetscErrorCode GmshReadDouble(334,10588
+#define GMSH_MAX_TAGS 341,10778
+ PetscInt id;344,10821
+ PetscInt dim;345,10869
+ double bbox[bbox346,10917
+ PetscInt numTags;347,10968
+ int tags[tags348,11024
+} GmshEntity;349,11072
+ GmshEntity *entity[entity352,11104
+ PetscHMapI entityMap[entityMap353,11129
+} GmshEntities;354,11157
+static PetscErrorCode GmshEntitiesCreate(356,11174
+static PetscErrorCode GmshEntitiesDestroy(369,11531
+static PetscErrorCode GmshEntitiesAdd(383,11901
+static PetscErrorCode GmshEntitiesGet(393,12286
+ PetscInt *id;id404,12596
+ double *xyz;xyz405,12628
+ PetscInt *tag;tag406,12663
+} GmshNodes;407,12699
+static PetscErrorCode GmshNodesCreate(409,12713
+static PetscErrorCode GmshNodesDestroy(419,13042
+ PetscInt id;431,13359
+ PetscInt dim;432,13409
+ PetscInt cellType;433,13458
+ PetscInt numVerts;434,13507
+ PetscInt numNodes;435,13567
+ PetscInt *nodes;nodes436,13625
+ PetscInt numTags;437,13682
+ int tags[tags438,13748
+} GmshElement;439,13806
+static PetscErrorCode GmshElementsCreate(441,13822
+static PetscErrorCode GmshElementsDestroy(448,14000
+ PetscInt dim;457,14213
+ PetscInt order;458,14235
+ GmshEntities *entities;entities459,14259
+ PetscInt numNodes;460,14286
+ GmshNodes *nodelist;nodelist461,14313
+ PetscInt numElems;462,14340
+ GmshElement *elements;elements463,14367
+ PetscInt numVerts;464,14394
+ PetscInt numCells;465,14421
+ PetscInt *periodMap;periodMap466,14448
+ PetscInt *vertexMap;vertexMap467,14476
+ PetscSegBuffer segbuf;468,14504
+ PetscInt numRegions;469,14529
+ PetscInt *regionDims;regionDims470,14558
+ PetscInt *regionTags;regionTags471,14587
+ char **regionNames;regionNames472,14616
+} GmshMesh;473,14646
+static PetscErrorCode GmshMeshCreate(475,14659
+static PetscErrorCode GmshMeshDestroy(483,14869
+static PetscErrorCode GmshReadNodes_v22(501,15544
+static PetscErrorCode GmshReadElements_v22(532,16912
+static PetscErrorCode GmshReadEntities_v40(611,20051
+static PetscErrorCode GmshReadNodes_v40(659,22145
+static PetscErrorCode GmshReadElements_v40(720,24943
+static PetscErrorCode GmshReadPeriodic_v40(772,27434
+static PetscErrorCode GmshReadEntities_v41(873,31778
+static PetscErrorCode GmshReadNodes_v41(917,33606
+static PetscErrorCode GmshReadElements_v41(964,35403
+static PetscErrorCode GmshReadPeriodic_v41(1020,37621
+static PetscErrorCode GmshReadMeshFormat(1053,38996
+static PetscErrorCode GmshReadPhysicalNames(1092,41061
+static PetscErrorCode GmshReadEntities(1122,42524
+static PetscErrorCode GmshReadNodes(1136,42824
+static PetscErrorCode GmshReadElements(1180,44262
+#define key(1214,45289
+#undef key1218,45546
+static PetscErrorCode GmshReadPeriodic(1252,46603
+#define DM_POLYTOPE_VERTEX 1285,47750
+static const DMPolytopeType DMPolytopeMap[DMPolytopeMap1286,47795
+static inline DMPolytopeType DMPolytopeTypeFromGmsh(1296,48191
+static PetscErrorCode GmshCreateFE(1301,48323
+PetscErrorCode DMPlexCreateGmshFromFile(1390,51937
+PetscErrorCode DMPlexCreateGmsh(1470,55644
+ n 1756,67407
+
+src/dm/impls/plex/plexextrude.c,77
+plexextrude.c:^?plexextrude.c^A,1
+PetscErrorCode DMPlexExtrude(49,2095
+PetscErrorCode DMExtrude_Plex(88,4001
+
+src/dm/impls/plex/plexcreate.c,4220
+plexcreate.c:^?plexcreate.c^A,1
+#define PETSCDM_DLL1,0
+PetscLogEvent DMPLEX_CreateFromFile,9,303
+PetscLogEvent DMPLEX_CreateFromFile, DMPLEX_BuildFromCellList,9,303
+PetscLogEvent DMPLEX_CreateFromFile, DMPLEX_BuildFromCellList, DMPLEX_BuildCoordinatesFromCellList;9,303
+PetscErrorCode DMPlexCopy_Internal(15,606
+PetscErrorCode DMPlexReplace_Internal(40,1548
+static PetscErrorCode DMPlexSwap_Static(91,3551
+static PetscErrorCode DMPlexInterpolateInPlace_Internal(163,6398
+PetscErrorCode DMPlexCreateCoordinateSpace(188,7099
+PetscErrorCode DMPlexCreateDoublet(242,8965
+static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_1D_Internal(334,12891
+static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_2D_Internal(388,15154
+static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_3D_Internal(504,20152
+static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Internal(689,28752
+PetscErrorCode DMPlexCreateBoxSurfaceMesh(732,30496
+static PetscErrorCode DMPlexCreateLineMesh_Internal(745,31028
+static PetscErrorCode DMPlexCreateBoxMesh_Simplex_Internal(803,33651
+static PetscErrorCode DMPlexCreateCubeMesh_Internal(823,34709
+static PetscErrorCode DMPlexCreateBoxMesh_Tensor_Internal(1248,56581
+static PetscErrorCode DMPlexCreateBoxMesh_Internal(1278,57898
+PetscErrorCode DMPlexCreateBoxMesh(1358,60600
+static PetscErrorCode DMPlexCreateWedgeBoxMesh_Internal(1373,61370
+PetscErrorCode DMPlexCreateWedgeBoxMesh(1425,63584
+PetscErrorCode DMPlexSetOptionsPrefix(1463,64946
+static void snapToCylinder(1492,66035
+static PetscErrorCode DMPlexCreateHexCylinderMesh_Internal(1525,67411
+PetscErrorCode DMPlexCreateHexCylinderMesh(1920,79033
+static PetscErrorCode DMPlexCreateWedgeCylinderMesh_Internal(1930,79343
+PetscErrorCode DMPlexCreateWedgeCylinderMesh(2031,83409
+static inline PetscReal DiffNormReal(2041,83737
+static inline PetscReal DotReal(2048,83962
+static void snapToSphere(2057,84204
+static PetscErrorCode DMPlexCreateSphereMesh_Internal(2068,84893
+typedef void (*TPSEvaluateFunc)TPSEvaluateFunc2536,103125
+static void TPSEvaluate_SchwarzP(2543,103308
+static PetscErrorCode TPSExtrudeNormalFunc_SchwarzP(2555,103963
+static void TPSEvaluate_Gyroid(2567,104376
+static PetscErrorCode TPSExtrudeNormalFunc_Gyroid(2587,105634
+static void TPSNearestPointResJac(2618,107234
+static PetscErrorCode TPSNearestPoint(2670,109184
+const char *const DMPlexTPSTypes[DMPlexTPSTypes2693,110175
+static PetscErrorCode DMPlexCreateTPSMesh_Internal(2695,110276
+PetscErrorCode DMPlexCreateTPSMesh(3263,139054
+PetscErrorCode DMPlexCreateSphereMesh(3290,139989
+static PetscErrorCode DMPlexCreateBallMesh_Internal(3300,140315
+PetscErrorCode DMPlexCreateBallMesh(3342,141688
+static PetscErrorCode DMPlexCreateReferenceCell_Internal(3351,141954
+PetscErrorCode DMPlexCreateReferenceCell(3508,149155
+static PetscErrorCode DMPlexCreateBoundaryLabel_Private(3517,149431
+static void boxToAnnulus(3540,150224
+const char *const DMPlexShapes[DMPlexShapes3551,150944
+static PetscErrorCode DMPlexCreateFromOptions_Internal(3553,151124
+PetscErrorCode DMSetFromOptions_NonRefinement_Plex(3752,162139
+PetscErrorCode DMSetFromOptions_Overlap_Plex(3820,167186
+static PetscErrorCode DMSetFromOptions_Plex(3857,169679
+static PetscErrorCode DMCreateGlobalVector_Plex(4113,181235
+static PetscErrorCode DMCreateLocalVector_Plex(4125,181847
+static PetscErrorCode DMGetDimPoints_Plex(4134,182191
+static PetscErrorCode DMGetNeighbors_Plex(4154,182747
+static PetscErrorCode DMInitialize_Plex(4185,183981
+PETSC_INTERN PetscErrorCode DMClone_Plex(4245,187984
+PETSC_EXTERN PetscErrorCode DMCreate_Plex(4290,190702
+PetscErrorCode DMPlexCreate(4339,192231
+PetscErrorCode DMPlexBuildFromCellListParallel(4414,194384
+PetscErrorCode DMPlexBuildCoordinatesFromCellListParallel(4516,199174
+PetscErrorCode DMPlexCreateFromCellListParallelPetsc(4609,203902
+PetscErrorCode DMPlexBuildFromCellList(4686,206120
+PetscErrorCode DMPlexBuildCoordinatesFromCellList(4738,208219
+PetscErrorCode DMPlexCreateFromCellListPetsc(4807,211608
+PetscErrorCode DMPlexCreateFromDAG(4871,214120
+PetscErrorCode DMPlexCreateCellVertexFromFile(4955,217580
+PetscErrorCode DMPlexCreateFromFile(5143,224642
+#define CheckExtension(5175,225999
+#undef CheckExtension5204,227078
+
+src/dm/impls/plex/plexcheckinterface.c,378
+plexcheckinterface.c:^?plexcheckinterface.c^A,1
+static PetscErrorCode ExchangeArrayByRank_Private(6,155
+static PetscErrorCode ExchangeVecByRank_Private(43,1874
+static PetscErrorCode SortByRemote_Private(72,3149
+static PetscErrorCode GetRecursiveConeCoordinatesPerRank_Private(96,4053
+static PetscErrorCode PetscSFComputeMultiRootOriginalNumberingByRank_Private(120,5021
+PetscErrorCode DMPlexCheckInterfaceCones(165,7081
+
+src/dm/impls/plex/plex.c,31693
+plex.c:^?plex.c^A,1
+PetscLogEvent DMPLEX_Interpolate,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad, DMPLEX_GlobalVectorLoad,13,365
+PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad, DMPLEX_GlobalVectorLoad, DMPLEX_LocalVectorLoad;13,365
+PetscLogEvent DMPLEX_RebalBuildGraph,14,1334
+PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF,14,1334
+PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph,14,1334
+PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph, DMPLEX_RebalPartition,14,1334
+PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph, DMPLEX_RebalPartition, DMPLEX_RebalScatterPart;14,1334
+PetscErrorCode DMPlexIsSimplex(35,2084
+PetscErrorCode DMPlexGetSimplexOrBoxCells(69,3123
+PetscErrorCode DMPlexGetFieldType_Internal(108,4194
+PetscErrorCode DMPlexVecView1D(165,6437
+static PetscErrorCode VecView_Plex_Local_Draw_1D(234,8961
+static PetscErrorCode VecView_Plex_Local_Draw_2D(244,9180
+static PetscErrorCode VecView_Plex_Local_Draw(384,15853
+static PetscErrorCode VecView_Plex_Local_VTK(411,16587
+PetscErrorCode VecView_Plex_Local(446,18003
+PetscErrorCode VecView_Plex(523,21019
+PetscErrorCode VecView_Plex_Native(574,23337
+PetscErrorCode VecLoad_Plex_Local(629,25656
+PetscErrorCode VecLoad_Plex(655,26580
+PetscErrorCode VecLoad_Plex_Native(681,27630
+PETSC_UNUSED static PetscErrorCode DMPlexView_Ascii_Geometry(717,29134
+ CS_CARTESIAN,774,31595
+ CS_POLAR,775,31611
+ CS_CYLINDRICAL,776,31623
+ CS_SPHERICAL777,31641
+} CoordSystem;778,31656
+const char *CoordSystems[CoordSystems779,31671
+static PetscErrorCode DMPlexView_Ascii_Coordinates(781,31781
+static PetscErrorCode DMPlexView_Ascii(819,33551
+static PetscErrorCode DMPlexDrawCell(1587,73250
+static PetscErrorCode DMPlexDrawCellHighOrder(1644,77718
+static PetscErrorCode DMPlexView_Draw(1683,79557
+PetscErrorCode DMView_Plex(1746,82483
+PetscErrorCode DMPlexTopologyView(1838,86417
+PetscErrorCode DMPlexCoordinatesView(1879,88054
+PetscErrorCode DMPlexLabelsView(1916,89511
+PetscErrorCode DMPlexSectionView(1963,92150
+PetscErrorCode DMPlexGlobalVectorView(2025,94793
+PetscErrorCode DMPlexLocalVectorView(2100,98111
+PetscErrorCode DMLoad_Plex(2135,99607
+PetscErrorCode DMPlexTopologyLoad(2176,101489
+PetscErrorCode DMPlexCoordinatesLoad(2216,103247
+PetscErrorCode DMPlexLabelsLoad(2259,105105
+PetscErrorCode DMPlexSectionLoad(2334,110102
+PetscErrorCode DMPlexGlobalVectorLoad(2397,113014
+PetscErrorCode DMPlexLocalVectorLoad(2472,116380
+PetscErrorCode DMDestroy_Plex(2508,117936
+PetscErrorCode DMCreateMatrix_Plex(2559,120748
+PetscErrorCode DMPlexGetSubdomainSection(2661,124992
+PetscErrorCode DMPlexGetChart(2696,125926
+PetscErrorCode DMPlexSetChart(2720,126529
+PetscErrorCode DMPlexGetConeSize(2747,127285
+PetscErrorCode DMPlexSetConeSize(2775,128030
+PetscErrorCode DMPlexAddConeSize(2802,128780
+PetscErrorCode DMPlexGetCone(2831,129690
+PetscErrorCode DMPlexGetConeTuple(2861,130622
+PetscErrorCode DMPlexGetConeRecursiveVertices(2902,132125
+PetscErrorCode DMPlexGetConeRecursive(2947,134328
+PetscErrorCode DMPlexRestoreConeRecursive(3033,137696
+PetscErrorCode DMPlexSetCone(3069,139043
+PetscErrorCode DMPlexGetConeOrientation(3116,141266
+PetscErrorCode DMPlexSetConeOrientation(3153,142446
+PetscErrorCode DMPlexInsertCone(3191,144132
+PetscErrorCode DMPlexInsertConeOrientation(3227,145969
+PetscErrorCode DMPlexGetSupportSize(3260,147411
+PetscErrorCode DMPlexSetSupportSize(3288,148170
+PetscErrorCode DMPlexGetSupport(3318,149081
+PetscErrorCode DMPlexSetSupport(3348,150098
+PetscErrorCode DMPlexInsertSupport(3383,151665
+PetscInt DMPolytopeConvertNewOrientation_Internal(3402,152997
+PetscInt DMPolytopeConvertOldOrientation_Internal(3426,153581
+PetscErrorCode DMPlexConvertOldOrientations_Internal(3451,154228
+static PetscErrorCode DMPlexGetTransitiveClosure_Depth1_Private(3493,155728
+static PetscErrorCode DMPlexTransitiveClosure_Tensor_Internal(3547,157681
+PetscErrorCode DMPlexGetTransitiveClosure_Internal(3618,160832
+PetscErrorCode DMPlexGetTransitiveClosure(3727,165541
+PetscErrorCode DMPlexRestoreTransitiveClosure(3756,166722
+PetscErrorCode DMPlexGetMaxSizes(3781,167477
+PetscErrorCode DMSetUp_Plex(3792,167885
+PetscErrorCode DMCreateSubDM_Plex(3812,168599
+PetscErrorCode DMCreateSuperDM_Plex(3829,169237
+PetscErrorCode DMPlexSymmetrize(3867,170353
+static PetscErrorCode DMPlexCreateDepthStratum(3912,172009
+PetscErrorCode DMPlexStratify(3976,175120
+PetscErrorCode DMPlexComputeCellType_Internal(4067,178158
+PetscErrorCode DMPlexComputeCellTypes(4210,181628
+PetscErrorCode DMPlexGetJoin(4260,183228
+PetscErrorCode DMPlexRestoreJoin(4326,185541
+PetscErrorCode DMPlexGetFullJoin(4359,186660
+PetscErrorCode DMPlexGetMeet(4459,190301
+PetscErrorCode DMPlexRestoreMeet(4525,192578
+PetscErrorCode DMPlexGetFullMeet(4558,193697
+PetscErrorCode DMPlexEqual(4653,197113
+PetscErrorCode DMPlexGetNumFaceVertices(4717,199339
+PetscErrorCode DMPlexGetDepthLabel(4800,202251
+PetscErrorCode DMPlexGetDepth(4831,203121
+PetscErrorCode DMPlexGetDepthStratum(4867,204274
+PetscErrorCode DMPlexGetHeightStratum(4917,205862
+PetscErrorCode DMPlexGetPointDepth(4962,207105
+PetscErrorCode DMPlexGetPointHeight(4987,207752
+PetscErrorCode DMPlexGetCellTypeLabel(5019,208688
+PetscErrorCode DMPlexGetCellType(5045,209365
+PetscErrorCode DMPlexSetCellType(5080,210672
+PetscErrorCode DMCreateCoordinateDM_Plex(5091,210972
+PetscErrorCode DMCreateCoordinateField_Plex(5115,211764
+PetscErrorCode DMPlexGetConeSection(5148,212823
+PetscErrorCode DMPlexGetSupportSection(5173,213417
+PetscErrorCode DMPlexGetCones(5198,213945
+PetscErrorCode DMPlexGetConeOrientations(5228,214821
+static PetscErrorCode PetscSectionFieldGetTensorDegree_Private(5244,215345
+PetscErrorCode DMPlexSetClosurePermutationTensor(5319,217662
+PetscErrorCode DMPlexGetPointDualSpaceFEM(5574,230019
+static inline PetscErrorCode DMPlexVecGetClosure_Depth1_Static(5605,230804
+static inline PetscErrorCode CompressPoints_Private(5681,233301
+PetscErrorCode DMPlexGetCompressedClosure(5700,233850
+PetscErrorCode DMPlexRestoreCompressedClosure(5725,234706
+static inline PetscErrorCode DMPlexVecGetClosure_Static(5741,235225
+static inline PetscErrorCode DMPlexVecGetClosure_Fields_Static(5786,236826
+PetscErrorCode DMPlexVecGetClosure(5885,240341
+PetscErrorCode DMPlexVecGetClosureAtDepth_Internal(5935,242670
+PetscErrorCode DMPlexVecRestoreClosure(6034,246467
+static inline void add(6045,246810
+static inline void insert(6049,246879
+static inline PetscErrorCode updatePoint_private(6054,246951
+static inline PetscErrorCode updatePointBC_private(6122,249331
+static inline PetscErrorCode updatePointFields_private(6172,251072
+static inline PetscErrorCode updatePointFieldsBC_private(6242,253584
+static inline PetscErrorCode DMPlexVecSetClosure_Depth1_Static(6357,257701
+PetscErrorCode DMPlexVecSetClosure(6437,260395
+static inline PetscErrorCode CheckPoint_Private(6603,268025
+PetscErrorCode DMPlexVecSetFieldClosure_Internal(6621,268691
+static PetscErrorCode DMPlexPrintMatSetValues(6719,273146
+PetscErrorCode DMPlexGetIndicesPoint_Internal(6765,275313
+PetscErrorCode DMPlexGetIndicesPointFields_Internal(6841,279188
+static PetscErrorCode DMPlexGetIndicesPointFieldsSplit_Internal(6892,281419
+PetscErrorCode DMPlexAnchorsModifyMat(6933,283029
+PetscErrorCode DMPlexGetClosureIndices(7426,302503
+PetscErrorCode DMPlexRestoreClosureIndices(7623,311534
+PetscErrorCode DMPlexMatSetClosure(7650,312622
+PetscErrorCode DMPlexMatSetClosureGeneral(7714,315932
+PetscErrorCode DMPlexMatSetClosureRefined(7758,318968
+PetscErrorCode DMPlexMatGetClosureIndicesRefined(7924,327703
+PetscErrorCode DMPlexGetVTKCellHeight(8082,335512
+PetscErrorCode DMPlexSetVTKCellHeight(8104,336098
+PetscErrorCode DMPlexGetGhostCellStratum(8128,336746
+PetscErrorCode DMPlexCreateNumbering_Plex(8141,337173
+PetscErrorCode DMPlexCreateCellNumbering_Internal(8171,338610
+PetscErrorCode DMPlexGetCellNumbering(8196,339458
+PetscErrorCode DMPlexCreateVertexNumbering_Internal(8207,339836
+PetscErrorCode DMPlexGetVertexNumbering(8231,340576
+PetscErrorCode DMPlexCreatePointNumbering(8285,342100
+PetscErrorCode DMPlexCreateRankField(8342,344188
+PetscErrorCode DMPlexCreateLabelField(8397,345976
+PetscErrorCode DMPlexCheckSymmetry(8447,347572
+static PetscErrorCode DMPlexCellUnsplitVertices_Private(8530,351735
+PetscErrorCode DMPlexCheckSkeleton(8596,353831
+PetscErrorCode DMPlexCheckFaces(8657,356596
+PetscErrorCode DMPlexCheckGeometry(8744,361188
+PetscErrorCode DMPlexCheckPointSF(8820,364052
+PetscErrorCode DMPlexCheck(8924,368406
+typedef struct cell_stats 8939,368844
+ PetscReal min,8940,368872
+ PetscReal min, max,8940,368872
+ PetscReal min, max, sum,8940,368872
+ PetscReal min, max, sum, squaresum;8940,368872
+ PetscInt count;8941,368910
+} cell_stats_t;8942,368929
+static void MPIAPI cell_stats_reduce(8944,368946
+PetscErrorCode DMPlexCheckCellShape(8979,369989
+PetscErrorCode DMPlexComputeOrthogonalQuality(9131,376638
+static PetscErrorCode DMGetFullDM(9273,383060
+static PetscErrorCode DMCreateAffineInterpolationCorrection_Plex(9300,384065
+PETSC_INTERN PetscErrorCode DMInterpolateSolution_Plex(9346,385946
+PetscErrorCode DMCreateInterpolation_Plex(9381,387101
+PetscErrorCode DMCreateInjection_Plex(9413,388565
+static void g0_identity_private(9424,388892
+PetscErrorCode DMCreateMassMatrixLumped_Plex(9431,389450
+PetscErrorCode DMCreateMassMatrix_Plex(9467,390695
+PetscErrorCode DMPlexGetRegularRefinement(9537,393112
+PetscErrorCode DMPlexSetRegularRefinement(9557,393683
+PetscErrorCode DMPlexGetAnchors(9582,394608
+PetscErrorCode DMPlexSetAnchors(9617,396190
+static PetscErrorCode DMPlexCreateConstraintSection_Anchors(9671,398284
+static PetscErrorCode DMPlexCreateConstraintMatrix_Anchors(9714,399872
+PetscErrorCode DMCreateDefaultConstraints_Plex(9826,404102
+PetscErrorCode DMCreateSubDomainDM_Plex(9850,404955
+PetscErrorCode DMPlexMonitorThroughput(9983,409870
+
src/dm/impls/plex/plexhdf5xdmf.c,162
plexhdf5xdmf.c:^?plexhdf5xdmf.c^A,1
static PetscErrorCode SplitPath_Private(7,197
@@ -51104,238 +51611,6 @@
PetscErrorCode DMPlexCreateExodus(1465,56491
n 1697,66961
-src/dm/impls/plex/plex.c,31693
-plex.c:^?plex.c^A,1
-PetscLogEvent DMPLEX_Interpolate,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad, DMPLEX_GlobalVectorLoad,13,365
-PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF, DMPLEX_LocatePoints, DMPLEX_TopologyView, DMPLEX_LabelsView, DMPLEX_CoordinatesView, DMPLEX_SectionView, DMPLEX_GlobalVectorView, DMPLEX_LocalVectorView, DMPLEX_TopologyLoad, DMPLEX_LabelsLoad, DMPLEX_CoordinatesLoad, DMPLEX_SectionLoad, DMPLEX_GlobalVectorLoad, DMPLEX_LocalVectorLoad;13,365
-PetscLogEvent DMPLEX_RebalBuildGraph,14,1334
-PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF,14,1334
-PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph,14,1334
-PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph, DMPLEX_RebalPartition,14,1334
-PetscLogEvent DMPLEX_RebalBuildGraph, DMPLEX_RebalRewriteSF, DMPLEX_RebalGatherGraph, DMPLEX_RebalPartition, DMPLEX_RebalScatterPart;14,1334
-PetscErrorCode DMPlexIsSimplex(35,2084
-PetscErrorCode DMPlexGetSimplexOrBoxCells(69,3123
-PetscErrorCode DMPlexGetFieldType_Internal(108,4194
-PetscErrorCode DMPlexVecView1D(165,6437
-static PetscErrorCode VecView_Plex_Local_Draw_1D(234,8961
-static PetscErrorCode VecView_Plex_Local_Draw_2D(244,9180
-static PetscErrorCode VecView_Plex_Local_Draw(384,15853
-static PetscErrorCode VecView_Plex_Local_VTK(411,16587
-PetscErrorCode VecView_Plex_Local(446,18003
-PetscErrorCode VecView_Plex(523,21019
-PetscErrorCode VecView_Plex_Native(574,23337
-PetscErrorCode VecLoad_Plex_Local(629,25656
-PetscErrorCode VecLoad_Plex(655,26580
-PetscErrorCode VecLoad_Plex_Native(681,27630
-PETSC_UNUSED static PetscErrorCode DMPlexView_Ascii_Geometry(717,29134
- CS_CARTESIAN,774,31595
- CS_POLAR,775,31611
- CS_CYLINDRICAL,776,31623
- CS_SPHERICAL777,31641
-} CoordSystem;778,31656
-const char *CoordSystems[CoordSystems779,31671
-static PetscErrorCode DMPlexView_Ascii_Coordinates(781,31781
-static PetscErrorCode DMPlexView_Ascii(819,33551
-static PetscErrorCode DMPlexDrawCell(1587,73250
-static PetscErrorCode DMPlexDrawCellHighOrder(1644,77718
-static PetscErrorCode DMPlexView_Draw(1683,79557
-PetscErrorCode DMView_Plex(1746,82483
-PetscErrorCode DMPlexTopologyView(1838,86416
-PetscErrorCode DMPlexCoordinatesView(1879,88053
-PetscErrorCode DMPlexLabelsView(1916,89510
-PetscErrorCode DMPlexSectionView(1963,92149
-PetscErrorCode DMPlexGlobalVectorView(2025,94792
-PetscErrorCode DMPlexLocalVectorView(2100,98110
-PetscErrorCode DMLoad_Plex(2135,99606
-PetscErrorCode DMPlexTopologyLoad(2176,101488
-PetscErrorCode DMPlexCoordinatesLoad(2216,103246
-PetscErrorCode DMPlexLabelsLoad(2259,105104
-PetscErrorCode DMPlexSectionLoad(2334,110101
-PetscErrorCode DMPlexGlobalVectorLoad(2397,113013
-PetscErrorCode DMPlexLocalVectorLoad(2472,116379
-PetscErrorCode DMDestroy_Plex(2508,117935
-PetscErrorCode DMCreateMatrix_Plex(2559,120747
-PetscErrorCode DMPlexGetSubdomainSection(2661,124991
-PetscErrorCode DMPlexGetChart(2696,125925
-PetscErrorCode DMPlexSetChart(2720,126528
-PetscErrorCode DMPlexGetConeSize(2747,127284
-PetscErrorCode DMPlexSetConeSize(2775,128029
-PetscErrorCode DMPlexAddConeSize(2802,128779
-PetscErrorCode DMPlexGetCone(2831,129689
-PetscErrorCode DMPlexGetConeTuple(2861,130621
-PetscErrorCode DMPlexGetConeRecursiveVertices(2902,132124
-PetscErrorCode DMPlexGetConeRecursive(2947,134327
-PetscErrorCode DMPlexRestoreConeRecursive(3033,137695
-PetscErrorCode DMPlexSetCone(3069,139042
-PetscErrorCode DMPlexGetConeOrientation(3116,141265
-PetscErrorCode DMPlexSetConeOrientation(3153,142445
-PetscErrorCode DMPlexInsertCone(3191,144131
-PetscErrorCode DMPlexInsertConeOrientation(3227,145968
-PetscErrorCode DMPlexGetSupportSize(3260,147410
-PetscErrorCode DMPlexSetSupportSize(3288,148169
-PetscErrorCode DMPlexGetSupport(3318,149080
-PetscErrorCode DMPlexSetSupport(3348,150097
-PetscErrorCode DMPlexInsertSupport(3383,151664
-PetscInt DMPolytopeConvertNewOrientation_Internal(3402,152996
-PetscInt DMPolytopeConvertOldOrientation_Internal(3426,153580
-PetscErrorCode DMPlexConvertOldOrientations_Internal(3451,154227
-static PetscErrorCode DMPlexGetTransitiveClosure_Depth1_Private(3493,155727
-static PetscErrorCode DMPlexTransitiveClosure_Tensor_Internal(3547,157680
-PetscErrorCode DMPlexGetTransitiveClosure_Internal(3618,160831
-PetscErrorCode DMPlexGetTransitiveClosure(3727,165540
-PetscErrorCode DMPlexRestoreTransitiveClosure(3756,166721
-PetscErrorCode DMPlexGetMaxSizes(3781,167476
-PetscErrorCode DMSetUp_Plex(3792,167884
-PetscErrorCode DMCreateSubDM_Plex(3812,168598
-PetscErrorCode DMCreateSuperDM_Plex(3829,169236
-PetscErrorCode DMPlexSymmetrize(3867,170352
-static PetscErrorCode DMPlexCreateDepthStratum(3912,172008
-PetscErrorCode DMPlexStratify(3976,175119
-PetscErrorCode DMPlexComputeCellType_Internal(4067,178157
-PetscErrorCode DMPlexComputeCellTypes(4210,181627
-PetscErrorCode DMPlexGetJoin(4260,183227
-PetscErrorCode DMPlexRestoreJoin(4326,185540
-PetscErrorCode DMPlexGetFullJoin(4359,186659
-PetscErrorCode DMPlexGetMeet(4459,190300
-PetscErrorCode DMPlexRestoreMeet(4525,192577
-PetscErrorCode DMPlexGetFullMeet(4558,193696
-PetscErrorCode DMPlexEqual(4653,197112
-PetscErrorCode DMPlexGetNumFaceVertices(4717,199338
-PetscErrorCode DMPlexGetDepthLabel(4800,202250
-PetscErrorCode DMPlexGetDepth(4831,203120
-PetscErrorCode DMPlexGetDepthStratum(4867,204273
-PetscErrorCode DMPlexGetHeightStratum(4917,205861
-PetscErrorCode DMPlexGetPointDepth(4962,207104
-PetscErrorCode DMPlexGetPointHeight(4987,207751
-PetscErrorCode DMPlexGetCellTypeLabel(5019,208687
-PetscErrorCode DMPlexGetCellType(5045,209364
-PetscErrorCode DMPlexSetCellType(5080,210671
-PetscErrorCode DMCreateCoordinateDM_Plex(5091,210971
-PetscErrorCode DMCreateCoordinateField_Plex(5115,211763
-PetscErrorCode DMPlexGetConeSection(5148,212822
-PetscErrorCode DMPlexGetSupportSection(5173,213416
-PetscErrorCode DMPlexGetCones(5198,213944
-PetscErrorCode DMPlexGetConeOrientations(5228,214820
-static PetscErrorCode PetscSectionFieldGetTensorDegree_Private(5244,215344
-PetscErrorCode DMPlexSetClosurePermutationTensor(5319,217661
-PetscErrorCode DMPlexGetPointDualSpaceFEM(5574,230018
-static inline PetscErrorCode DMPlexVecGetClosure_Depth1_Static(5605,230803
-static inline PetscErrorCode CompressPoints_Private(5681,233300
-PetscErrorCode DMPlexGetCompressedClosure(5700,233849
-PetscErrorCode DMPlexRestoreCompressedClosure(5725,234705
-static inline PetscErrorCode DMPlexVecGetClosure_Static(5741,235224
-static inline PetscErrorCode DMPlexVecGetClosure_Fields_Static(5786,236825
-PetscErrorCode DMPlexVecGetClosure(5885,240340
-PetscErrorCode DMPlexVecGetClosureAtDepth_Internal(5935,242669
-PetscErrorCode DMPlexVecRestoreClosure(6034,246466
-static inline void add(6045,246809
-static inline void insert(6049,246878
-static inline PetscErrorCode updatePoint_private(6054,246950
-static inline PetscErrorCode updatePointBC_private(6122,249330
-static inline PetscErrorCode updatePointFields_private(6172,251071
-static inline PetscErrorCode updatePointFieldsBC_private(6242,253583
-static inline PetscErrorCode DMPlexVecSetClosure_Depth1_Static(6357,257700
-PetscErrorCode DMPlexVecSetClosure(6437,260394
-static inline PetscErrorCode CheckPoint_Private(6603,268024
-PetscErrorCode DMPlexVecSetFieldClosure_Internal(6621,268690
-static PetscErrorCode DMPlexPrintMatSetValues(6719,273145
-PetscErrorCode DMPlexGetIndicesPoint_Internal(6765,275312
-PetscErrorCode DMPlexGetIndicesPointFields_Internal(6841,279187
-static PetscErrorCode DMPlexGetIndicesPointFieldsSplit_Internal(6892,281418
-PetscErrorCode DMPlexAnchorsModifyMat(6933,283028
-PetscErrorCode DMPlexGetClosureIndices(7426,302502
-PetscErrorCode DMPlexRestoreClosureIndices(7623,311533
-PetscErrorCode DMPlexMatSetClosure(7650,312621
-PetscErrorCode DMPlexMatSetClosureGeneral(7714,315931
-PetscErrorCode DMPlexMatSetClosureRefined(7758,318967
-PetscErrorCode DMPlexMatGetClosureIndicesRefined(7924,327702
-PetscErrorCode DMPlexGetVTKCellHeight(8082,335511
-PetscErrorCode DMPlexSetVTKCellHeight(8104,336097
-PetscErrorCode DMPlexGetGhostCellStratum(8128,336745
-PetscErrorCode DMPlexCreateNumbering_Plex(8141,337172
-PetscErrorCode DMPlexCreateCellNumbering_Internal(8171,338609
-PetscErrorCode DMPlexGetCellNumbering(8196,339457
-PetscErrorCode DMPlexCreateVertexNumbering_Internal(8207,339835
-PetscErrorCode DMPlexGetVertexNumbering(8231,340575
-PetscErrorCode DMPlexCreatePointNumbering(8285,342099
-PetscErrorCode DMPlexCreateRankField(8342,344187
-PetscErrorCode DMPlexCreateLabelField(8397,345975
-PetscErrorCode DMPlexCheckSymmetry(8447,347571
-static PetscErrorCode DMPlexCellUnsplitVertices_Private(8530,351734
-PetscErrorCode DMPlexCheckSkeleton(8596,353830
-PetscErrorCode DMPlexCheckFaces(8657,356595
-PetscErrorCode DMPlexCheckGeometry(8744,361187
-PetscErrorCode DMPlexCheckPointSF(8820,364051
-PetscErrorCode DMPlexCheck(8924,368405
-typedef struct cell_stats 8939,368843
- PetscReal min,8940,368871
- PetscReal min, max,8940,368871
- PetscReal min, max, sum,8940,368871
- PetscReal min, max, sum, squaresum;8940,368871
- PetscInt count;8941,368909
-} cell_stats_t;8942,368928
-static void MPIAPI cell_stats_reduce(8944,368945
-PetscErrorCode DMPlexCheckCellShape(8979,369988
-PetscErrorCode DMPlexComputeOrthogonalQuality(9131,376637
-static PetscErrorCode DMGetFullDM(9273,383059
-static PetscErrorCode DMCreateAffineInterpolationCorrection_Plex(9300,384064
-PETSC_INTERN PetscErrorCode DMInterpolateSolution_Plex(9346,385945
-PetscErrorCode DMCreateInterpolation_Plex(9381,387100
-PetscErrorCode DMCreateInjection_Plex(9413,388564
-static void g0_identity_private(9424,388891
-PetscErrorCode DMCreateMassMatrixLumped_Plex(9431,389449
-PetscErrorCode DMCreateMassMatrix_Plex(9467,390694
-PetscErrorCode DMPlexGetRegularRefinement(9537,393111
-PetscErrorCode DMPlexSetRegularRefinement(9557,393682
-PetscErrorCode DMPlexGetAnchors(9582,394607
-PetscErrorCode DMPlexSetAnchors(9617,396189
-static PetscErrorCode DMPlexCreateConstraintSection_Anchors(9671,398283
-static PetscErrorCode DMPlexCreateConstraintMatrix_Anchors(9714,399871
-PetscErrorCode DMCreateDefaultConstraints_Plex(9826,404101
-PetscErrorCode DMCreateSubDomainDM_Plex(9850,404954
-PetscErrorCode DMPlexMonitorThroughput(9983,409869
-
src/dm/impls/plex/plexvtk.c,531
plexvtk.c:^?plexvtk.c^A,1
#define PETSCDM_DLL1,0
@@ -51448,16 +51723,6 @@
PetscErrorCode DMGetEnclosureRelation(4064,173397
PetscErrorCode DMGetEnclosurePoint(4124,175234
-src/dm/impls/plex/plexsection.c,393
-plexsection.c:^?plexsection.c^A,1
-static PetscErrorCode DMPlexCreateSectionFields(4,135
-static PetscErrorCode DMPlexCreateSectionDof(89,3546
-static PetscErrorCode DMPlexCreateSectionBCDof(194,7242
-static PetscErrorCode DMPlexCreateSectionBCIndicesField(270,10157
-static PetscErrorCode DMPlexCreateSectionBCIndices(356,13659
-PetscErrorCode DMPlexCreateSection(430,16617
-PetscErrorCode DMCreateLocalSection_Plex(450,17601
-
src/dm/impls/plex/plexrefine.c,589
plexrefine.c:^?plexrefine.c^A,1
PetscErrorCode DMPlexCreateProcessSF(24,701
@@ -51569,138 +51834,6 @@
plexindices.c:^?plexindices.c^A,1
PetscErrorCode DMPlexCreateClosureIndex(19,661
-src/dm/impls/plex/plexgmsh.c,5030
-plexgmsh.c:^?plexgmsh.c^A,1
-#define PETSCDM_DLL1,0
-#define GMSH_LEXORDER_ITEM(7,166
-static int *GmshLexOrder_QUA_2_Serendipity(GmshLexOrder_QUA_2_Serendipity16,493
-static int *GmshLexOrder_HEX_2_Serendipity(GmshLexOrder_HEX_2_Serendipity37,921
-#define GMSH_LEXORDER_LIST(77,1705
-GMSH_LEXORDER_ITEM(89,2027
- GMSH_VTX 99,2238
- GMSH_SEG 100,2264
- GMSH_TRI 101,2290
- GMSH_QUA 102,2316
- GMSH_TET 103,2342
- GMSH_HEX 104,2368
- GMSH_PRI 105,2394
- GMSH_PYR 106,2420
- GMSH_NUM_POLYTOPES 107,2446
-} GmshPolytopeType;108,2471
- int cellType;111,2509
- int polytope;112,2525
- int dim;113,2541
- int order;114,2552
- int numVerts;115,2565
- int numNodes;116,2581
- int *(*lexorder)lexorder117,2597
-} GmshCellInfo;118,2623
-#define GmshCellEntry(120,2640
-static const GmshCellInfo GmshCellTable[GmshCellTable125,2846
-static GmshCellInfo GmshCellMap[GmshCellMap170,5393
-static PetscErrorCode GmshCellInfoSetUp(172,5432
-#define GmshCellTypeCheck(193,5989
- PetscViewer viewer;198,6522
- int fileFormat;199,6544
- int dataSize;200,6570
- PetscBool binary;201,6594
- PetscBool byteSwap;202,6616
- size_t wlen;203,6640
- void *wbuf;wbuf204,6660
- size_t slen;205,6680
- void *sbuf;sbuf206,6700
- PetscInt *nbuf;nbuf207,6720
- PetscInt nodeStart;208,6740
- PetscInt nodeEnd;209,6765
- PetscInt *nodeMap;nodeMap210,6788
-} GmshFile;211,6811
-static PetscErrorCode GmshBufferGet(213,6824
-static PetscErrorCode GmshBufferSizeGet(227,7187
-static PetscErrorCode GmshRead(242,7587
-static PetscErrorCode GmshReadString(250,7871
-static PetscErrorCode GmshMatch(257,8080
-static PetscErrorCode GmshExpect(264,8313
-static PetscErrorCode GmshReadSection(274,8662
-static PetscErrorCode GmshReadEndSection(292,9142
-static PetscErrorCode GmshReadSize(300,9401
-static PetscErrorCode GmshReadInt(327,10406
-static PetscErrorCode GmshReadDouble(334,10588
-#define GMSH_MAX_TAGS 341,10778
- PetscInt id;344,10821
- PetscInt dim;345,10869
- double bbox[bbox346,10917
- PetscInt numTags;347,10968
- int tags[tags348,11024
-} GmshEntity;349,11072
- GmshEntity *entity[entity352,11104
- PetscHMapI entityMap[entityMap353,11129
-} GmshEntities;354,11157
-static PetscErrorCode GmshEntitiesCreate(356,11174
-static PetscErrorCode GmshEntitiesDestroy(369,11531
-static PetscErrorCode GmshEntitiesAdd(383,11901
-static PetscErrorCode GmshEntitiesGet(393,12286
- PetscInt *id;id404,12596
- double *xyz;xyz405,12628
- PetscInt *tag;tag406,12663
-} GmshNodes;407,12699
-static PetscErrorCode GmshNodesCreate(409,12713
-static PetscErrorCode GmshNodesDestroy(419,13042
- PetscInt id;431,13359
- PetscInt dim;432,13409
- PetscInt cellType;433,13458
- PetscInt numVerts;434,13507
- PetscInt numNodes;435,13567
- PetscInt *nodes;nodes436,13625
- PetscInt numTags;437,13682
- int tags[tags438,13748
-} GmshElement;439,13806
-static PetscErrorCode GmshElementsCreate(441,13822
-static PetscErrorCode GmshElementsDestroy(448,14000
- PetscInt dim;457,14213
- PetscInt order;458,14235
- GmshEntities *entities;entities459,14259
- PetscInt numNodes;460,14286
- GmshNodes *nodelist;nodelist461,14313
- PetscInt numElems;462,14340
- GmshElement *elements;elements463,14367
- PetscInt numVerts;464,14394
- PetscInt numCells;465,14421
- PetscInt *periodMap;periodMap466,14448
- PetscInt *vertexMap;vertexMap467,14476
- PetscSegBuffer segbuf;468,14504
- PetscInt numRegions;469,14529
- PetscInt *regionDims;regionDims470,14558
- PetscInt *regionTags;regionTags471,14587
- char **regionNames;regionNames472,14616
-} GmshMesh;473,14646
-static PetscErrorCode GmshMeshCreate(475,14659
-static PetscErrorCode GmshMeshDestroy(483,14869
-static PetscErrorCode GmshReadNodes_v22(501,15544
-static PetscErrorCode GmshReadElements_v22(532,16912
-static PetscErrorCode GmshReadEntities_v40(611,20051
-static PetscErrorCode GmshReadNodes_v40(659,22145
-static PetscErrorCode GmshReadElements_v40(720,24940
-static PetscErrorCode GmshReadPeriodic_v40(772,27431
-static PetscErrorCode GmshReadEntities_v41(873,31775
-static PetscErrorCode GmshReadNodes_v41(917,33603
-static PetscErrorCode GmshReadElements_v41(964,35400
-static PetscErrorCode GmshReadPeriodic_v41(1020,37618
-static PetscErrorCode GmshReadMeshFormat(1053,38993
-static PetscErrorCode GmshReadPhysicalNames(1092,41058
-static PetscErrorCode GmshReadEntities(1122,42521
-static PetscErrorCode GmshReadNodes(1136,42821
-static PetscErrorCode GmshReadElements(1180,44259
-#define key(1214,45286
-#undef key1218,45543
-static PetscErrorCode GmshReadPeriodic(1252,46600
-#define DM_POLYTOPE_VERTEX 1285,47747
-static const DMPolytopeType DMPolytopeMap[DMPolytopeMap1286,47792
-static inline DMPolytopeType DMPolytopeTypeFromGmsh(1296,48188
-static PetscErrorCode GmshCreateFE(1301,48320
-PetscErrorCode DMPlexCreateGmshFromFile(1390,51934
-PetscErrorCode DMPlexCreateGmsh(1470,55641
- n 1756,67404
-
src/dm/impls/plex/plexgenerate.c,269
plexgenerate.c:^?plexgenerate.c^A,1
PetscErrorCode DMPlexInvertCell(17,436
@@ -51816,97 +51949,6 @@
PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(5503,243586
PetscErrorCode DMPlexComputeJacobian_Action_Internal(5745,256973
-src/dm/impls/plex/plexextrude.c,77
-plexextrude.c:^?plexextrude.c^A,1
-PetscErrorCode DMPlexExtrude(49,2095
-PetscErrorCode DMExtrude_Plex(88,4001
-
-src/dm/impls/plex/plexcreate.c,4220
-plexcreate.c:^?plexcreate.c^A,1
-#define PETSCDM_DLL1,0
-PetscLogEvent DMPLEX_CreateFromFile,9,303
-PetscLogEvent DMPLEX_CreateFromFile, DMPLEX_BuildFromCellList,9,303
-PetscLogEvent DMPLEX_CreateFromFile, DMPLEX_BuildFromCellList, DMPLEX_BuildCoordinatesFromCellList;9,303
-PetscErrorCode DMPlexCopy_Internal(15,606
-PetscErrorCode DMPlexReplace_Internal(40,1548
-static PetscErrorCode DMPlexSwap_Static(91,3551
-static PetscErrorCode DMPlexInterpolateInPlace_Internal(163,6398
-PetscErrorCode DMPlexCreateCoordinateSpace(188,7099
-PetscErrorCode DMPlexCreateDoublet(242,8965
-static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_1D_Internal(334,12891
-static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_2D_Internal(388,15154
-static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Tensor_3D_Internal(504,20152
-static PetscErrorCode DMPlexCreateBoxSurfaceMesh_Internal(689,28752
-PetscErrorCode DMPlexCreateBoxSurfaceMesh(732,30496
-static PetscErrorCode DMPlexCreateLineMesh_Internal(745,31028
-static PetscErrorCode DMPlexCreateBoxMesh_Simplex_Internal(803,33651
-static PetscErrorCode DMPlexCreateCubeMesh_Internal(823,34709
-static PetscErrorCode DMPlexCreateBoxMesh_Tensor_Internal(1248,56581
-static PetscErrorCode DMPlexCreateBoxMesh_Internal(1278,57898
-PetscErrorCode DMPlexCreateBoxMesh(1358,60600
-static PetscErrorCode DMPlexCreateWedgeBoxMesh_Internal(1373,61370
-PetscErrorCode DMPlexCreateWedgeBoxMesh(1425,63584
-PetscErrorCode DMPlexSetOptionsPrefix(1463,64946
-static void snapToCylinder(1492,66035
-static PetscErrorCode DMPlexCreateHexCylinderMesh_Internal(1525,67411
-PetscErrorCode DMPlexCreateHexCylinderMesh(1920,79033
-static PetscErrorCode DMPlexCreateWedgeCylinderMesh_Internal(1930,79343
-PetscErrorCode DMPlexCreateWedgeCylinderMesh(2031,83409
-static inline PetscReal DiffNormReal(2041,83737
-static inline PetscReal DotReal(2048,83962
-static void snapToSphere(2057,84204
-static PetscErrorCode DMPlexCreateSphereMesh_Internal(2068,84893
-typedef void (*TPSEvaluateFunc)TPSEvaluateFunc2536,103125
-static void TPSEvaluate_SchwarzP(2543,103308
-static PetscErrorCode TPSExtrudeNormalFunc_SchwarzP(2555,103963
-static void TPSEvaluate_Gyroid(2567,104376
-static PetscErrorCode TPSExtrudeNormalFunc_Gyroid(2587,105634
-static void TPSNearestPointResJac(2618,107234
-static PetscErrorCode TPSNearestPoint(2670,109184
-const char *const DMPlexTPSTypes[DMPlexTPSTypes2693,110175
-static PetscErrorCode DMPlexCreateTPSMesh_Internal(2695,110276
-PetscErrorCode DMPlexCreateTPSMesh(3263,139054
-PetscErrorCode DMPlexCreateSphereMesh(3290,139989
-static PetscErrorCode DMPlexCreateBallMesh_Internal(3300,140315
-PetscErrorCode DMPlexCreateBallMesh(3342,141688
-static PetscErrorCode DMPlexCreateReferenceCell_Internal(3351,141954
-PetscErrorCode DMPlexCreateReferenceCell(3508,149155
-static PetscErrorCode DMPlexCreateBoundaryLabel_Private(3517,149431
-static void boxToAnnulus(3540,150224
-const char *const DMPlexShapes[DMPlexShapes3551,150944
-static PetscErrorCode DMPlexCreateFromOptions_Internal(3553,151124
-PetscErrorCode DMSetFromOptions_NonRefinement_Plex(3752,162139
-PetscErrorCode DMSetFromOptions_Overlap_Plex(3820,167186
-static PetscErrorCode DMSetFromOptions_Plex(3857,169679
-static PetscErrorCode DMCreateGlobalVector_Plex(4113,181235
-static PetscErrorCode DMCreateLocalVector_Plex(4125,181847
-static PetscErrorCode DMGetDimPoints_Plex(4134,182191
-static PetscErrorCode DMGetNeighbors_Plex(4154,182747
-static PetscErrorCode DMInitialize_Plex(4185,183981
-PETSC_INTERN PetscErrorCode DMClone_Plex(4245,187984
-PETSC_EXTERN PetscErrorCode DMCreate_Plex(4290,190702
-PetscErrorCode DMPlexCreate(4339,192231
-PetscErrorCode DMPlexBuildFromCellListParallel(4414,194384
-PetscErrorCode DMPlexBuildCoordinatesFromCellListParallel(4516,199174
-PetscErrorCode DMPlexCreateFromCellListParallelPetsc(4609,203902
-PetscErrorCode DMPlexBuildFromCellList(4686,206120
-PetscErrorCode DMPlexBuildCoordinatesFromCellList(4738,208219
-PetscErrorCode DMPlexCreateFromCellListPetsc(4807,211608
-PetscErrorCode DMPlexCreateFromDAG(4871,214120
-PetscErrorCode DMPlexCreateCellVertexFromFile(4955,217580
-PetscErrorCode DMPlexCreateFromFile(5143,224642
-#define CheckExtension(5175,225999
-#undef CheckExtension5204,227078
-
-src/dm/impls/plex/plexcheckinterface.c,378
-plexcheckinterface.c:^?plexcheckinterface.c^A,1
-static PetscErrorCode ExchangeArrayByRank_Private(6,155
-static PetscErrorCode ExchangeVecByRank_Private(43,1874
-static PetscErrorCode SortByRemote_Private(72,3149
-static PetscErrorCode GetRecursiveConeCoordinatesPerRank_Private(96,4053
-static PetscErrorCode PetscSFComputeMultiRootOriginalNumberingByRank_Private(120,5021
-PetscErrorCode DMPlexCheckInterfaceCones(165,7082
-
src/dm/impls/plex/plexcgns.c,113
plexcgns.c:^?plexcgns.c^A,1
#define PETSCDM_DLL1,0
@@ -52005,48 +52047,6 @@
PetscErrorCode DMPlexMetricIntersection2(1693,55836
PetscErrorCode DMPlexMetricIntersection3(1718,56502
-src/dm/impls/plex/plexinterpolate.c,1897
-plexinterpolate.c:^?plexinterpolate.c^A,1
-const char *const DMPlexInterpolatedFlags[DMPlexInterpolatedFlags5,143
-typedef struct _PetscHashIJKLKey 11,336
- PetscInt i,12,371
- PetscInt i, j,12,371
- PetscInt i, j, k,12,371
- PetscInt i, j, k, l;12,371
-} PetscHashIJKLKey;13,394
-#define PetscHashIJKLKeyHash(15,415
-#define PetscHashIJKLKeyEqual(17,595
-PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(19,730
-typedef struct _PetscHashIJKLRemoteKey 23,971
- PetscSFNode i,24,1012
- PetscSFNode i, j,24,1012
- PetscSFNode i, j, k,24,1012
- PetscSFNode i, j, k, l;24,1012
-} PetscHashIJKLRemoteKey;25,1038
-#define PetscHashIJKLRemoteKeyHash(27,1065
-#define PetscHashIJKLRemoteKeyEqual(30,1339
-PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(33,1672
-PetscErrorCode DMPlexGetRawFaces_Internal(56,2393
-PetscErrorCode DMPlexRestoreRawFaces_Internal(474,14434
-static PetscErrorCode DMPlexInterpolateFaces_Internal(484,14991
-static PetscErrorCode SortRmineRremoteByRemote_Private(704,25068
-PetscErrorCode DMPlexOrientInterface_Internal(728,26014
-static PetscErrorCode IntArrayViewFromOptions(858,33003
-static PetscErrorCode SFNodeArrayViewFromOptions(874,33706
-static PetscErrorCode DMPlexMapToLocalPoint(894,34628
-static PetscErrorCode DMPlexMapToGlobalPoint(921,35456
-static PetscErrorCode DMPlexPointIsShared(949,36425
-static PetscErrorCode DMPlexConeIsShared(971,37097
-static PetscErrorCode DMPlexGetConeMinimum(990,37648
-static PetscErrorCode DMPlexAddSharedFace_Private(1019,38552
-PetscErrorCode DMPlexInterpolatePointSF(1110,42880
-PetscErrorCode DMPlexInterpolate(1464,62523
-PetscErrorCode DMPlexCopyCoordinates(1539,65541
-PetscErrorCode DMPlexUninterpolate(1688,71782
-static PetscErrorCode DMPlexIsInterpolated_Internal(1792,76141
-PetscErrorCode DMPlexIsInterpolated(1870,78705
-PetscErrorCode DMPlexIsInterpolatedCollective(1919,80708
-
src/dm/impls/plex/plexhpddm.c,51
plexhpddm.c:^?plexhpddm.c^A,1
PetscErrorCode DMCreateNeumannOverlap_Plex(23,752
@@ -52672,6 +52672,136 @@
SUBMANSEC 8,121
LOCDIR 9,140
+src/dm/impls/plex/tests/ex39.c,1309
+ex39.c:^?ex39.c^A,1
+const char help[help1,0
+static PetscErrorCode zero_func(24,812
+static PetscErrorCode linear_u(34,1068
+static PetscErrorCode linear_p(40,1260
+static PetscErrorCode sinusoid_u(51,1520
+static PetscErrorCode sinusoid_p(57,1743
+static void f0_v_linear(66,2072
+static void f0_v_sinusoid(77,2692
+static void f0_q(89,3367
+static void f0_w(100,3975
+static void f0_bd_u_sinusoid(112,4679
+static void f0_bd_u_linear(123,5310
+static void g0_vu(137,6124
+static void g0_qp(144,6636
+static void g1_qu(153,7321
+static void g0_wp(161,7932
+static void g0_wd(168,8445
+static void g1_wu(175,8988
+ NONE 183,9570
+ PERTURB 184,9590
+ SKEW 185,9610
+ SKEW_PERTURB 186,9630
+} Transform;187,9649
+const char *const TransformTypes[TransformTypes188,9662
+ LINEAR 192,9858
+ SINUSOIDAL 193,9876
+} Solution;194,9893
+const char *const SolutionTypes[SolutionTypes195,9905
+ Transform mesh_transform;198,10007
+ Solution sol_form;199,10035
+} UserCtx;200,10057
+static PetscErrorCode ProcessOptions(203,10138
+static PetscErrorCode PerturbMesh(218,10982
+static PetscErrorCode SkewMesh(250,12193
+static PetscErrorCode TransformMesh(287,13428
+static PetscErrorCode CreateMesh(319,14377
+static PetscErrorCode SetupProblem(336,14976
+static PetscErrorCode SetupDiscretization(381,16958
+int main(426,18706
+
+src/dm/impls/plex/tests/ex19.c,503
+ex19.c:^?ex19.c^A,1
+static char help[help1,0
+ PetscInt Nr;8,156
+ PetscInt metOpt;9,218
+ PetscReal hmax,10,276
+ PetscReal hmax, hmin;10,276
+ PetscBool doL2;11,349
+} AppCtx;12,398
+static PetscErrorCode sensor(22,645
+static PetscErrorCode ProcessOptions(34,1037
+static PetscErrorCode CreateMesh(54,1991
+static PetscErrorCode ComputeMetricSensor(65,2327
+static PetscErrorCode ComputeMetric(118,4455
+static PetscErrorCode linear(174,6454
+static PetscErrorCode TestL2Projection(180,6613
+int main(260,10319
+
+src/dm/impls/plex/tests/ex18.c,3089
+ex18.c:^?ex18.c^A,1
+static char help[help1,0
+ NONE,190,3355
+ CREATE,191,3363
+ AFTER_CREATE,192,3373
+ AFTER_DISTRIBUTE193,3389
+} InterpType;194,3408
+ PetscInt debug;197,3440
+ PetscInt testNum;198,3494
+ PetscInt dim;199,3557
+ PetscBool cellSimplex;200,3622
+ PetscBool distribute;201,3679
+ InterpType interpolate;202,3733
+ PetscBool useGenerator;203,3823
+ PetscBool testOrientIF;204,3894
+ PetscBool testHeavy;205,3979
+ PetscBool customView;206,4040
+ PetscInt ornt[ornt207,4118
+ PetscInt faces[faces208,4198
+ PetscScalar coords[coords209,4276
+ PetscReal coordsTol;210,4303
+ PetscInt ncoords;211,4328
+ PetscInt pointsToExpand[pointsToExpand212,4351
+ PetscInt nPointsToExpand;213,4386
+ PetscBool testExpandPointsEmpty;214,4417
+ char filename[filename215,4454
+} AppCtx;216,4526
+struct _n_PortableBoundary 218,4537
+ Vec coordinates;219,4566
+ PetscInt depth;220,4595
+ PetscSection *sections;sections221,4618
+typedef struct _n_PortableBoundary *PortableBoundary;PortableBoundary223,4647
+static PetscLogStage stage[stage226,4729
+static PetscErrorCode PortableBoundaryDestroy(234,5076
+static PetscErrorCode ProcessOptions(247,5461
+static PetscErrorCode CreateMesh_1D(317,10495
+static PetscErrorCode CreateSimplex_2D(409,13517
+static PetscErrorCode CreateSimplex_3D(517,19288
+static PetscErrorCode CreateQuad_2D(569,21761
+static PetscErrorCode CreateHex_3D(609,23648
+static PetscErrorCode CustomView(649,25730
+static PetscErrorCode CreateMeshFromFile(662,26245
+static PetscErrorCode CreateMesh(688,27678
+#define ps2d(821,33120
+static inline PetscErrorCode coord2str(822,33173
+static PetscErrorCode ViewVerticesFromCoords(848,34172
+static PetscErrorCode TestExpandPoints(880,35545
+static PetscErrorCode DMPlexExpandedConesToFaces_Private(921,37269
+static PetscErrorCode DMPlexExpandedVerticesToFaces_Private(965,38963
+#define CHKERRQI(982,39472
+static PetscErrorCode DMLabelViewFromOptionsOnComm_Private(985,39540
+static inline PetscErrorCode DMLabelGetStratumISOnComm_Private(1007,40389
+static PetscErrorCode PetscSectionReplicate_Private(1020,40889
+static PetscErrorCode DMPlexExpandedVerticesCoordinatesToFaces_Private(1045,41923
+static PetscErrorCode DMPlexSetOrientInterface_Private(1057,42478
+static PetscErrorCode DMPlexGetExpandedBoundary_Private(1095,43940
+static PetscErrorCode DMPlexGetInterfaceFaces_Private(1197,48168
+static PetscErrorCode DMPlexComputeCompleteInterface_Private(1227,49727
+static PetscErrorCode PointSFGetOutwardInterfacePoints(1254,51084
+static PetscErrorCode PointSFGetInwardInterfacePoints(1265,51408
+static PetscErrorCode PointSFGetInterfacePoints_Private(1280,51929
+#define CHKERRMY(1293,52383
+static PetscErrorCode ViewPointsWithType_Internal(1295,52503
+static PetscErrorCode ViewPointsWithType(1360,54867
+static PetscErrorCode DMPlexComparePointSFWithInterface_Private(1381,55636
+static PetscErrorCode DMPlexISFilterVertices_Private(1429,57548
+static PetscErrorCode DMPlexCheckPointSFHeavy(1467,59575
+int main(1511,61597
+
src/dm/impls/plex/tests/ex26.c,44
ex26.c:^?ex26.c^A,1
static char help[help1,0
@@ -53044,48 +53174,6 @@
PetscErrorCode CreateMesh(545,22898
int main(790,32122
-src/dm/impls/plex/tests/ex39.c,1309
-ex39.c:^?ex39.c^A,1
-const char help[help1,0
-static PetscErrorCode zero_func(24,812
-static PetscErrorCode linear_u(34,1068
-static PetscErrorCode linear_p(40,1260
-static PetscErrorCode sinusoid_u(51,1520
-static PetscErrorCode sinusoid_p(57,1743
-static void f0_v_linear(66,2072
-static void f0_v_sinusoid(77,2692
-static void f0_q(89,3367
-static void f0_w(100,3975
-static void f0_bd_u_sinusoid(112,4679
-static void f0_bd_u_linear(123,5310
-static void g0_vu(137,6124
-static void g0_qp(144,6636
-static void g1_qu(153,7321
-static void g0_wp(161,7932
-static void g0_wd(168,8445
-static void g1_wu(175,8988
- NONE 183,9570
- PERTURB 184,9590
- SKEW 185,9610
- SKEW_PERTURB 186,9630
-} Transform;187,9649
-const char *const TransformTypes[TransformTypes188,9662
- LINEAR 192,9858
- SINUSOIDAL 193,9876
-} Solution;194,9893
-const char *const SolutionTypes[SolutionTypes195,9905
- Transform mesh_transform;198,10007
- Solution sol_form;199,10035
-} UserCtx;200,10057
-static PetscErrorCode ProcessOptions(203,10138
-static PetscErrorCode PerturbMesh(218,10982
-static PetscErrorCode SkewMesh(250,12193
-static PetscErrorCode TransformMesh(287,13427
-static PetscErrorCode CreateMesh(319,14376
-static PetscErrorCode SetupProblem(336,14975
-static PetscErrorCode SetupDiscretization(381,16957
-int main(426,18705
-
src/dm/impls/plex/tests/ex38.c,80
ex38.c:^?ex38.c^A,1
const char help[help1,0
@@ -53334,94 +53422,6 @@
const char help[help1,0
int main(6,121
-src/dm/impls/plex/tests/ex19.c,503
-ex19.c:^?ex19.c^A,1
-static char help[help1,0
- PetscInt Nr;8,156
- PetscInt metOpt;9,218
- PetscReal hmax,10,276
- PetscReal hmax, hmin;10,276
- PetscBool doL2;11,349
-} AppCtx;12,398
-static PetscErrorCode sensor(22,645
-static PetscErrorCode ProcessOptions(34,1037
-static PetscErrorCode CreateMesh(54,1991
-static PetscErrorCode ComputeMetricSensor(65,2327
-static PetscErrorCode ComputeMetric(118,4455
-static PetscErrorCode linear(174,6454
-static PetscErrorCode TestL2Projection(180,6613
-int main(260,10319
-
-src/dm/impls/plex/tests/ex18.c,3089
-ex18.c:^?ex18.c^A,1
-static char help[help1,0
- NONE,190,3355
- CREATE,191,3363
- AFTER_CREATE,192,3373
- AFTER_DISTRIBUTE193,3389
-} InterpType;194,3408
- PetscInt debug;197,3440
- PetscInt testNum;198,3494
- PetscInt dim;199,3557
- PetscBool cellSimplex;200,3622
- PetscBool distribute;201,3679
- InterpType interpolate;202,3733
- PetscBool useGenerator;203,3823
- PetscBool testOrientIF;204,3894
- PetscBool testHeavy;205,3979
- PetscBool customView;206,4040
- PetscInt ornt[ornt207,4118
- PetscInt faces[faces208,4198
- PetscScalar coords[coords209,4276
- PetscReal coordsTol;210,4303
- PetscInt ncoords;211,4328
- PetscInt pointsToExpand[pointsToExpand212,4351
- PetscInt nPointsToExpand;213,4386
- PetscBool testExpandPointsEmpty;214,4417
- char filename[filename215,4454
-} AppCtx;216,4526
-struct _n_PortableBoundary 218,4537
- Vec coordinates;219,4566
- PetscInt depth;220,4595
- PetscSection *sections;sections221,4618
-typedef struct _n_PortableBoundary *PortableBoundary;PortableBoundary223,4647
-static PetscLogStage stage[stage226,4729
-static PetscErrorCode PortableBoundaryDestroy(234,5076
-static PetscErrorCode ProcessOptions(247,5461
-static PetscErrorCode CreateMesh_1D(317,10495
-static PetscErrorCode CreateSimplex_2D(409,13517
-static PetscErrorCode CreateSimplex_3D(517,19288
-static PetscErrorCode CreateQuad_2D(569,21761
-static PetscErrorCode CreateHex_3D(609,23648
-static PetscErrorCode CustomView(649,25730
-static PetscErrorCode CreateMeshFromFile(662,26245
-static PetscErrorCode CreateMesh(688,27678
-#define ps2d(821,33120
-static inline PetscErrorCode coord2str(822,33173
-static PetscErrorCode ViewVerticesFromCoords(848,34172
-static PetscErrorCode TestExpandPoints(880,35545
-static PetscErrorCode DMPlexExpandedConesToFaces_Private(921,37269
-static PetscErrorCode DMPlexExpandedVerticesToFaces_Private(965,38963
-#define CHKERRQI(982,39472
-static PetscErrorCode DMLabelViewFromOptionsOnComm_Private(985,39540
-static inline PetscErrorCode DMLabelGetStratumISOnComm_Private(1007,40389
-static PetscErrorCode PetscSectionReplicate_Private(1020,40889
-static PetscErrorCode DMPlexExpandedVerticesCoordinatesToFaces_Private(1045,41923
-static PetscErrorCode DMPlexSetOrientInterface_Private(1057,42478
-static PetscErrorCode DMPlexGetExpandedBoundary_Private(1095,43940
-static PetscErrorCode DMPlexGetInterfaceFaces_Private(1197,48168
-static PetscErrorCode DMPlexComputeCompleteInterface_Private(1227,49727
-static PetscErrorCode PointSFGetOutwardInterfacePoints(1254,51084
-static PetscErrorCode PointSFGetInwardInterfacePoints(1265,51408
-static PetscErrorCode PointSFGetInterfacePoints_Private(1280,51929
-#define CHKERRMY(1293,52383
-static PetscErrorCode ViewPointsWithType_Internal(1295,52503
-static PetscErrorCode ViewPointsWithType(1360,54867
-static PetscErrorCode DMPlexComparePointSFWithInterface_Private(1381,55636
-static PetscErrorCode DMPlexISFilterVertices_Private(1429,57548
-static PetscErrorCode DMPlexCheckPointSFHeavy(1467,59575
-int main(1511,61597
-
src/dm/impls/plex/tests/ex17.c,128
ex17.c:^?ex17.c^A,1
static char help[help1,0
@@ -53810,6 +53810,24 @@
PetscErrorCode ProcessOptions(21,540
int main(61,2155
+src/dm/impls/network/networkcreate.c,757
+networkcreate.c:^?networkcreate.c^A,1
+#define PETSCDM_DLL1,0
+PetscErrorCode DMSetFromOptions_Network(5,128
+static PetscErrorCode VecArrayPrint_private(24,957
+static PetscErrorCode VecView_Network_Seq(43,1730
+static PetscErrorCode VecView_Network_MPI(81,3143
+PetscErrorCode VecView_Network(198,7502
+static PetscErrorCode DMCreateGlobalVector_Network(221,8301
+static PetscErrorCode DMCreateLocalVector_Network(232,8640
+PetscErrorCode DMNetworkInitializeToDefault_NonShared(242,8896
+PetscErrorCode DMNetworkInitializeToDefault(281,10101
+PetscErrorCode DMInitialize_Network(316,11260
+static PetscErrorCode DMNetworkCopyHeaderTopological(349,12759
+PetscErrorCode DMClone_Network(375,13928
+PETSC_EXTERN PetscErrorCode DMCreate_Network(405,15464
+PetscErrorCode DMNetworkCreate(434,16088
+
src/dm/impls/network/network.c,3995
network.c:^?network.c^A,1
PetscLogEvent DMNetwork_LayoutSetUp;3,71
@@ -53820,71 +53838,71 @@
PetscErrorCode DMNetworkGetPlex(54,1963
PetscErrorCode DMNetworkGetNumSubNetworks(79,2461
PetscErrorCode DMNetworkSetNumSubNetworks(103,3060
-PetscErrorCode DMNetworkAddSubnetwork(202,6153
-PetscErrorCode DMNetworkSharedVertexGetInfo(294,9940
-static inline PetscErrorCode VtxGetInfo(325,10925
-static inline PetscErrorCode TableAddSVtx(364,12037
-static PetscErrorCode SharedVtxCreate(392,12990
-static PetscErrorCode GetEdgelist_Coupling(515,17894
-PetscErrorCode DMNetworkInitializeNonTopological(607,22117
-PetscErrorCode DMNetworkLayoutSetUp(650,23540
-PetscErrorCode DMNetworkGetSubnetwork(810,31129
-PetscErrorCode DMNetworkAddSharedVertices(840,32422
-PetscErrorCode DMNetworkGetSharedVertices(885,34036
-PetscErrorCode DMNetworkRegisterComponent(916,34849
-PetscErrorCode DMNetworkGetVertexRange(974,36628
-PetscErrorCode DMNetworkGetEdgeRange(1000,37212
-PetscErrorCode DMNetworkGetIndex(1011,37541
-PetscErrorCode DMNetworkGetSubnetID(1029,38048
-PetscErrorCode DMNetworkGetGlobalEdgeIndex(1063,38883
-PetscErrorCode DMNetworkGetGlobalVertexIndex(1086,39409
-PetscErrorCode DMNetworkGetNumComponents(1109,39932
-PetscErrorCode DMNetworkGetLocalVecOffset(1147,41382
-PetscErrorCode DMNetworkGetGlobalVecOffset(1191,43095
-PetscErrorCode DMNetworkGetEdgeOffset(1227,44218
-PetscErrorCode DMNetworkGetVertexOffset(1252,44823
-PetscErrorCode DMNetworkAddComponent(1286,46457
-PetscErrorCode DMNetworkGetComponent(1386,51097
-PetscErrorCode DMNetworkComponentSetUp(1418,52394
-static PetscErrorCode DMNetworkVariablesSetUp(1474,55164
-static PetscErrorCode DMNetworkGetSubSection_private(1484,55418
-static PetscErrorCode DMNetworkSetSubMap_private(1501,56035
-PetscErrorCode DMNetworkAssembleGraphStructures(1533,57174
-static inline PetscErrorCode SetSubnetIdLookupBT(1577,59542
-PetscErrorCode DMNetworkDistribute(1615,60785
-PetscErrorCode PetscSFGetSubSF(1823,71319
-PetscErrorCode DMNetworkGetSupportingEdges(1892,74038
-PetscErrorCode DMNetworkGetConnectedVertices(1922,74859
-PetscErrorCode DMNetworkIsSharedVertex(1947,75456
-PetscErrorCode DMNetworkIsGhostVertex(1990,76574
-PetscErrorCode DMSetUp_Network(2004,76989
-PetscErrorCode DMNetworkHasJacobian(2029,77796
-PetscErrorCode DMNetworkEdgeSetMatrix(2078,79255
-PetscErrorCode DMNetworkVertexSetMatrix(2110,80174
-static inline PetscErrorCode MatSetPreallocationDenseblock_private(2130,80978
-static inline PetscErrorCode MatSetPreallocationUserblock_private(2144,81460
-static inline PetscErrorCode MatSetPreallocationblock_private(2168,82269
-static inline PetscErrorCode MatSetDenseblock_private(2179,82693
-static inline PetscErrorCode MatSetUserblock_private(2192,83154
-static inline PetscErrorCode MatSetblock_private(2213,83994
-PetscErrorCode CreateSubGlobalToLocalMapping_private(2226,84516
-PetscErrorCode DMCreateMatrix_Network_Nest(2250,85239
-PetscErrorCode DMCreateMatrix_Network(2316,87692
-static PetscErrorCode DMNetworkDestroyComponentData(2577,97211
-PetscErrorCode DMDestroy_Network(2594,97804
-PetscErrorCode DMView_Network(2659,100939
-PetscErrorCode DMGlobalToLocalBegin_Network(2722,104301
-PetscErrorCode DMGlobalToLocalEnd_Network(2731,104547
-PetscErrorCode DMLocalToGlobalBegin_Network(2740,104789
-PetscErrorCode DMLocalToGlobalEnd_Network(2749,105035
-PetscErrorCode DMNetworkGetVertexLocalToGlobalOrdering(2774,105600
-PetscErrorCode DMNetworkSetVertexLocalToGlobalOrdering(2797,106225
-static inline PetscErrorCode DMISAddSize_private(2906,110645
-static inline PetscErrorCode DMISComputeIdx_private(2932,111540
-PetscErrorCode DMNetworkCreateIS(2985,113769
-static inline PetscErrorCode DMISComputeLocalIdx_private(3029,115576
-PetscErrorCode DMNetworkCreateLocalIS(3082,117815
-PetscErrorCode DMNetworkFinalizeComponents(3124,119505
+PetscErrorCode DMNetworkAddSubnetwork(202,6154
+PetscErrorCode DMNetworkSharedVertexGetInfo(294,9941
+static inline PetscErrorCode VtxGetInfo(325,10926
+static inline PetscErrorCode TableAddSVtx(364,12038
+static PetscErrorCode SharedVtxCreate(392,12991
+static PetscErrorCode GetEdgelist_Coupling(515,17895
+PetscErrorCode DMNetworkInitializeNonTopological(607,22118
+PetscErrorCode DMNetworkLayoutSetUp(650,23541
+PetscErrorCode DMNetworkGetSubnetwork(810,31130
+PetscErrorCode DMNetworkAddSharedVertices(840,32423
+PetscErrorCode DMNetworkGetSharedVertices(885,34037
+PetscErrorCode DMNetworkRegisterComponent(916,34850
+PetscErrorCode DMNetworkGetVertexRange(974,36629
+PetscErrorCode DMNetworkGetEdgeRange(1000,37213
+PetscErrorCode DMNetworkGetIndex(1011,37542
+PetscErrorCode DMNetworkGetSubnetID(1029,38049
+PetscErrorCode DMNetworkGetGlobalEdgeIndex(1063,38884
+PetscErrorCode DMNetworkGetGlobalVertexIndex(1086,39410
+PetscErrorCode DMNetworkGetNumComponents(1109,39933
+PetscErrorCode DMNetworkGetLocalVecOffset(1147,41383
+PetscErrorCode DMNetworkGetGlobalVecOffset(1191,43096
+PetscErrorCode DMNetworkGetEdgeOffset(1227,44219
+PetscErrorCode DMNetworkGetVertexOffset(1252,44824
+PetscErrorCode DMNetworkAddComponent(1286,46458
+PetscErrorCode DMNetworkGetComponent(1386,51098
+PetscErrorCode DMNetworkComponentSetUp(1418,52395
+static PetscErrorCode DMNetworkVariablesSetUp(1474,55165
+static PetscErrorCode DMNetworkGetSubSection_private(1484,55419
+static PetscErrorCode DMNetworkSetSubMap_private(1501,56036
+PetscErrorCode DMNetworkAssembleGraphStructures(1533,57175
+static inline PetscErrorCode SetSubnetIdLookupBT(1577,59543
+PetscErrorCode DMNetworkDistribute(1615,60786
+PetscErrorCode PetscSFGetSubSF(1823,71320
+PetscErrorCode DMNetworkGetSupportingEdges(1892,74039
+PetscErrorCode DMNetworkGetConnectedVertices(1922,74860
+PetscErrorCode DMNetworkIsSharedVertex(1947,75457
+PetscErrorCode DMNetworkIsGhostVertex(1990,76575
+PetscErrorCode DMSetUp_Network(2004,76990
+PetscErrorCode DMNetworkHasJacobian(2029,77797
+PetscErrorCode DMNetworkEdgeSetMatrix(2078,79256
+PetscErrorCode DMNetworkVertexSetMatrix(2110,80175
+static inline PetscErrorCode MatSetPreallocationDenseblock_private(2130,80979
+static inline PetscErrorCode MatSetPreallocationUserblock_private(2144,81461
+static inline PetscErrorCode MatSetPreallocationblock_private(2168,82270
+static inline PetscErrorCode MatSetDenseblock_private(2179,82694
+static inline PetscErrorCode MatSetUserblock_private(2192,83155
+static inline PetscErrorCode MatSetblock_private(2213,83995
+PetscErrorCode CreateSubGlobalToLocalMapping_private(2226,84517
+PetscErrorCode DMCreateMatrix_Network_Nest(2250,85240
+PetscErrorCode DMCreateMatrix_Network(2316,87693
+static PetscErrorCode DMNetworkDestroyComponentData(2577,97212
+PetscErrorCode DMDestroy_Network(2594,97805
+PetscErrorCode DMView_Network(2659,100940
+PetscErrorCode DMGlobalToLocalBegin_Network(2722,104302
+PetscErrorCode DMGlobalToLocalEnd_Network(2731,104548
+PetscErrorCode DMLocalToGlobalBegin_Network(2740,104790
+PetscErrorCode DMLocalToGlobalEnd_Network(2749,105036
+PetscErrorCode DMNetworkGetVertexLocalToGlobalOrdering(2774,105601
+PetscErrorCode DMNetworkSetVertexLocalToGlobalOrdering(2797,106226
+static inline PetscErrorCode DMISAddSize_private(2906,110646
+static inline PetscErrorCode DMISComputeIdx_private(2932,111541
+PetscErrorCode DMNetworkCreateIS(2985,113770
+static inline PetscErrorCode DMISComputeLocalIdx_private(3029,115577
+PetscErrorCode DMNetworkCreateLocalIS(3082,117816
+PetscErrorCode DMNetworkFinalizeComponents(3124,119506
src/dm/impls/network/networkmonitor.c,229
networkmonitor.c:^?networkmonitor.c^A,1
@@ -53894,24 +53912,6 @@
PetscErrorCode DMNetworkMonitorAdd(119,2920
PetscErrorCode DMNetworkMonitorView(183,5437
-src/dm/impls/network/networkcreate.c,757
-networkcreate.c:^?networkcreate.c^A,1
-#define PETSCDM_DLL1,0
-PetscErrorCode DMSetFromOptions_Network(5,128
-static PetscErrorCode VecArrayPrint_private(24,957
-static PetscErrorCode VecView_Network_Seq(43,1730
-static PetscErrorCode VecView_Network_MPI(81,3143
-PetscErrorCode VecView_Network(198,7502
-static PetscErrorCode DMCreateGlobalVector_Network(221,8301
-static PetscErrorCode DMCreateLocalVector_Network(232,8640
-PetscErrorCode DMNetworkInitializeToDefault_NonShared(242,8896
-PetscErrorCode DMNetworkInitializeToDefault(281,10101
-PetscErrorCode DMInitialize_Network(316,11260
-static PetscErrorCode DMNetworkCopyHeaderTopological(349,12758
-PetscErrorCode DMClone_Network(375,13927
-PETSC_EXTERN PetscErrorCode DMCreate_Network(405,15463
-PetscErrorCode DMNetworkCreate(434,16087
-
src/dm/impls/network/makefile,115
makefile:^?makefile^A,1
SOURCEC 3,34
@@ -53923,10 +53923,6 @@
SUBMANSEC=9,163
LOCDIR 10,184
-src/dm/impls/network/tests/makefile,13
-makefile:^?makefile^A,1
-LOCDIR 3,37
-
src/dm/impls/network/tests/ex1.c,138
ex1.c:^?ex1.c^A,1
static char help[help1,0
@@ -53934,6 +53930,10 @@
PetscErrorCode CreateSimpleStarGraph(56,2036
int main(92,3570
+src/dm/impls/network/tests/makefile,13
+makefile:^?makefile^A,1
+LOCDIR 3,37
+
src/dm/impls/moab/makefile,120
makefile:^?makefile^A,1
SOURCECXX=4,70
@@ -54567,6 +54567,60 @@
static char help[help3,63
int main(5,151
+src/dm/impls/da/dainterp.c,757
+dainterp.c:^?dainterp.c^A,1
+#define NEWVERSION 12,642
+static PetscErrorCode ConvertToAIJ(22,1089
+PetscErrorCode DMCreateInterpolation_DA_1D_Q1(40,1493
+PetscErrorCode DMCreateInterpolation_DA_1D_Q0(177,7249
+PetscErrorCode DMCreateInterpolation_DA_2D_Q1(263,11256
+PetscErrorCode DMCreateInterpolation_DA_2D_Q0(495,22600
+PetscErrorCode DMCreateInterpolation_DA_3D_Q0(620,29304
+PetscErrorCode DMCreateInterpolation_DA_3D_Q1(755,37298
+PetscErrorCode DMCreateInterpolation_DA(1034,52058
+PetscErrorCode DMCreateInjection_DA_1D(1079,55015
+PetscErrorCode DMCreateInjection_DA_2D(1135,57729
+PetscErrorCode DMCreateInjection_DA_3D(1205,61745
+PetscErrorCode DMCreateInjection_DA(1295,67061
+PetscErrorCode DMCreateAggregates(1335,69339
+PetscErrorCode DMDACreateAggregates(1362,70057
+
+src/dm/impls/da/dagtol.c,431
+dagtol.c:^?dagtol.c^A,1
+PetscErrorCode DMGlobalToLocalBegin_DA(7,134
+PetscErrorCode DMGlobalToLocalEnd_DA(19,508
+PetscErrorCode DMLocalToGlobalBegin_DA(31,878
+PetscErrorCode DMLocalToGlobalEnd_DA(50,2177
+PetscErrorCode DMDAGlobalToNatural_Create(84,3373
+PetscErrorCode DMDAGlobalToNaturalBegin(138,5509
+PetscErrorCode DMDAGlobalToNaturalEnd(179,6925
+PetscErrorCode DMDANaturalToGlobalBegin(217,8338
+PetscErrorCode DMDANaturalToGlobalEnd(258,9833
+
+src/dm/impls/da/dageometry.c,217
+dageometry.c:^?dageometry.c^A,1
+PetscErrorCode DMDAConvertToCell(20,351
+PetscErrorCode private_DMDALocatePointsIS_2D_Regular(36,1500
+PetscErrorCode private_DMDALocatePointsIS_3D_Regular(115,3978
+PetscErrorCode DMLocatePoints_DA_Regular(212,7161
+
+src/dm/impls/da/dacorn.c,651
+dacorn.c:^?dacorn.c^A,1
+PetscErrorCode DMCreateCoordinateDM_DA(9,161
+PetscErrorCode DMCreateCoordinateField_DA(16,326
+PetscErrorCode DMDASetFieldName(56,1613
+PetscErrorCode DMDAGetFieldNames(87,2775
+PetscErrorCode DMDASetFieldNames(115,3628
+PetscErrorCode DMDAGetFieldName(152,4872
+PetscErrorCode DMDASetCoordinateName(185,5949
+PetscErrorCode DMDAGetCoordinateName(220,7083
+PetscErrorCode DMDAGetCorners(261,8722
+PetscErrorCode DMGetLocalBoundingIndices_DMDA(281,9412
+PetscErrorCode DMDAGetReducedDMDA(301,9884
+PetscErrorCode DMDACreateCompatibleDMDA(324,10537
+PetscErrorCode DMDAGetCoordinateArray(393,12543
+PetscErrorCode DMDARestoreCoordinateArray(422,13214
+
src/dm/impls/da/grvtk.c,194
grvtk.c:^?grvtk.c^A,1
static PetscErrorCode DMDAGetFieldsNamed(11,480
@@ -54699,24 +54753,6 @@
PetscErrorCode DMDAGetArray(426,14593
PetscErrorCode DMDARestoreArray(543,17929
-src/dm/impls/da/dainterp.c,757
-dainterp.c:^?dainterp.c^A,1
-#define NEWVERSION 12,642
-static PetscErrorCode ConvertToAIJ(22,1089
-PetscErrorCode DMCreateInterpolation_DA_1D_Q1(40,1493
-PetscErrorCode DMCreateInterpolation_DA_1D_Q0(177,7249
-PetscErrorCode DMCreateInterpolation_DA_2D_Q1(263,11256
-PetscErrorCode DMCreateInterpolation_DA_2D_Q0(495,22600
-PetscErrorCode DMCreateInterpolation_DA_3D_Q0(620,29304
-PetscErrorCode DMCreateInterpolation_DA_3D_Q1(755,37298
-PetscErrorCode DMCreateInterpolation_DA(1034,52058
-PetscErrorCode DMCreateInjection_DA_1D(1079,55015
-PetscErrorCode DMCreateInjection_DA_2D(1135,57729
-PetscErrorCode DMCreateInjection_DA_3D(1205,61745
-PetscErrorCode DMCreateInjection_DA(1295,67061
-PetscErrorCode DMCreateAggregates(1335,69339
-PetscErrorCode DMDACreateAggregates(1362,70057
-
src/dm/impls/da/daindex.c,119
daindex.c:^?daindex.c^A,1
PetscErrorCode DMDAGetNatural_Private(12,263
@@ -54728,18 +54764,6 @@
PetscErrorCode DMDAGlobalToNaturalAllCreate(29,898
PetscErrorCode DMDANaturalAllToGlobalCreate(74,2448
-src/dm/impls/da/dagtol.c,431
-dagtol.c:^?dagtol.c^A,1
-PetscErrorCode DMGlobalToLocalBegin_DA(7,134
-PetscErrorCode DMGlobalToLocalEnd_DA(19,508
-PetscErrorCode DMLocalToGlobalBegin_DA(31,878
-PetscErrorCode DMLocalToGlobalEnd_DA(50,2177
-PetscErrorCode DMDAGlobalToNatural_Create(84,3373
-PetscErrorCode DMDAGlobalToNaturalBegin(138,5509
-PetscErrorCode DMDAGlobalToNaturalEnd(179,6925
-PetscErrorCode DMDANaturalToGlobalBegin(217,8338
-PetscErrorCode DMDANaturalToGlobalEnd(258,9833
-
src/dm/impls/da/daghost.c,44
daghost.c:^?daghost.c^A,1
PetscErrorCode DMDAGetGhostCorners(36,1299
@@ -54773,13 +54797,6 @@
PetscErrorCode DMDAVecGetArrayDOFWrite(619,27907
PetscErrorCode DMDAVecRestoreArrayDOFWrite(665,29965
-src/dm/impls/da/dageometry.c,217
-dageometry.c:^?dageometry.c^A,1
-PetscErrorCode DMDAConvertToCell(20,351
-PetscErrorCode private_DMDALocatePointsIS_2D_Regular(36,1500
-PetscErrorCode private_DMDALocatePointsIS_3D_Regular(115,3978
-PetscErrorCode DMLocatePoints_DA_Regular(212,7161
-
src/dm/impls/da/dadist.c,137
dadist.c:^?dadist.c^A,1
PetscErrorCode VecDuplicate_MPI_DA(8,135
@@ -54807,23 +54824,6 @@
PETSC_EXTERN PetscErrorCode DMCreate_DA(348,15618
PetscErrorCode DMDACreate(471,19446
-src/dm/impls/da/dacorn.c,651
-dacorn.c:^?dacorn.c^A,1
-PetscErrorCode DMCreateCoordinateDM_DA(9,161
-PetscErrorCode DMCreateCoordinateField_DA(16,326
-PetscErrorCode DMDASetFieldName(56,1613
-PetscErrorCode DMDAGetFieldNames(87,2775
-PetscErrorCode DMDASetFieldNames(115,3628
-PetscErrorCode DMDAGetFieldName(152,4872
-PetscErrorCode DMDASetCoordinateName(185,5949
-PetscErrorCode DMDAGetCoordinateName(220,7082
-PetscErrorCode DMDAGetCorners(261,8721
-PetscErrorCode DMGetLocalBoundingIndices_DMDA(281,9411
-PetscErrorCode DMDAGetReducedDMDA(301,9883
-PetscErrorCode DMDACreateCompatibleDMDA(324,10536
-PetscErrorCode DMDAGetCoordinateArray(393,12542
-PetscErrorCode DMDARestoreCoordinateArray(422,13213
-
src/dm/impls/da/da3.c,122
da3.c:^?da3.c^A,1
static PetscErrorCode DMView_DA_3d(10,203
@@ -55755,7 +55755,7 @@
subroutine DMSwarmSetPointCoordinatesRandom(110,3227
subroutine DMSwarmSetType(116,3427
-src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90,13657
+src/dm/f90-mod/ftn-auto-interfaces/petscdmplex.h90,13658
petscdmplex.h90:^?petscdmplex.h90^A,1
subroutine DMPlexSetAdjacencyUseAnchors(1,0
subroutine DMPlexGetAdjacencyUseAnchors(7,194
@@ -55772,229 +55772,229 @@
subroutine DMPlexDistributeSetDefault(94,2898
subroutine DMPlexDistributeGetDefault(100,3088
subroutine DMPlexIsDistributed(106,3278
- subroutine DMPlexInterpolatePointSF(112,3454
- subroutine DMPlexInterpolate(118,3645
- subroutine DMPlexCopyCoordinates(124,3803
- subroutine DMPlexUninterpolate(130,3969
- subroutine DMPlexIsInterpolated(136,4131
- subroutine DMPlexIsInterpolatedCollective(142,4335
- subroutine DMPlexMetricSetIsotropic(148,4559
- subroutine DMPlexMetricIsIsotropic(154,4745
- subroutine DMPlexMetricSetUniform(160,4929
- subroutine DMPlexMetricIsUniform(166,5111
- subroutine DMPlexMetricSetRestrictAnisotropyFirst(172,5291
- subroutine DMPlexMetricRestrictAnisotropyFirst(178,5505
- subroutine DMPlexMetricSetNoInsertion(184,5713
- subroutine DMPlexMetricNoInsertion(190,5903
- subroutine DMPlexMetricSetNoSwapping(196,6087
- subroutine DMPlexMetricNoSwapping(202,6275
- subroutine DMPlexMetricSetNoMovement(208,6457
- subroutine DMPlexMetricNoMovement(214,6645
- subroutine DMPlexMetricSetNoSurf(220,6827
- subroutine DMPlexMetricNoSurf(226,7007
- subroutine DMPlexMetricSetMinimumMagnitude(232,7181
- subroutine DMPlexMetricGetMinimumMagnitude(238,7381
- subroutine DMPlexMetricSetMaximumMagnitude(244,7581
- subroutine DMPlexMetricGetMaximumMagnitude(250,7781
- subroutine DMPlexMetricSetMaximumAnisotropy(256,7981
- subroutine DMPlexMetricGetMaximumAnisotropy(262,8183
- subroutine DMPlexMetricSetTargetComplexity(268,8385
- subroutine DMPlexMetricGetTargetComplexity(274,8585
- subroutine DMPlexMetricSetNormalizationOrder(280,8785
- subroutine DMPlexMetricGetNormalizationOrder(286,8989
- subroutine DMPlexMetricSetGradationFactor(292,9193
- subroutine DMPlexMetricGetGradationFactor(298,9391
- subroutine DMPlexMetricSetHausdorffNumber(304,9589
- subroutine DMPlexMetricGetHausdorffNumber(310,9787
- subroutine DMPlexMetricSetVerbosity(316,9985
- subroutine DMPlexMetricGetVerbosity(322,10169
- subroutine DMPlexMetricSetNumIterations(328,10353
- subroutine DMPlexMetricGetNumIterations(334,10545
- subroutine DMPlexMetricCreate(340,10737
- subroutine DMPlexMetricCreateUniform(347,10935
- subroutine DMPlexMetricCreateIsotropic(355,11180
- subroutine DMPlexMetricDeterminantCreate(363,11417
- subroutine DMPlexMetricEnforceSPD(371,11656
- subroutine DMPlexMetricNormalize(381,11939
- subroutine DMPlexMetricAverage(391,12220
- subroutine DMPlexMetricAverage2(400,12482
- subroutine DMPlexMetricAverage3(408,12695
- subroutine DMPlexMetricIntersection(417,12929
- subroutine DMPlexMetricIntersection2(425,13164
- subroutine DMPlexMetricIntersection3(433,13387
- subroutine DMPlexGetOrdering(442,13631
- subroutine DMPlexGetOrdering1D(450,13876
- subroutine DMPlexPermute(456,14042
- subroutine DMPlexReorderSetDefault(463,14215
- subroutine DMPlexReorderGetDefault(469,14429
- subroutine DMPlexCreateCGNS(475,14643
- subroutine DMPlexCheckInterfaceCones(483,14875
- subroutine DMPlexCreateDoublet(488,15030
- subroutine DMPlexCreateWedgeBoxMesh(498,15334
- subroutine DMPlexCreateHexCylinderMesh(510,15740
- subroutine DMPlexCreateWedgeCylinderMesh(517,15973
- subroutine DMPlexCreateTPSMesh(525,16231
- subroutine DMPlexCreateSphereMesh(538,16656
- subroutine DMPlexCreateBallMesh(547,16933
- subroutine DMPlexCreateReferenceCell(555,17173
- subroutine DMPlexCreate(562,17402
- subroutine DMPlexCreateFromCellListParallelPetsc(568,17562
- subroutine DMPlexCreateFromCellListPetsc(586,18140
- subroutine DMPlexCreateFromDAG(600,18594
- subroutine DMPlexGetScale(611,18949
- subroutine DMPlexSetScale(618,19148
- subroutine DMPlexCreateRigidBody(625,19347
- subroutine DMPlexCreateRigidBodies(632,19578
- subroutine DMPlexSetMaxProjectionHeight(642,19921
- subroutine DMPlexGetMaxProjectionHeight(648,20113
- subroutine DMPlexGlobalToLocalBasis(654,20305
- subroutine DMPlexLocalToGlobalBasis(660,20484
- subroutine DMPlexCreateBasisRotation(666,20663
- subroutine DMPlexInsertBoundaryValues(674,20917
- subroutine DMPlexInsertTimeDerivativeBoundaryValues(685,21229
- subroutine DMPlexComputeClementInterpolant(697,21577
- subroutine DMPlexComputeGradientClementInterpolant(704,21791
- subroutine DMPlexGetGeometryFVM(711,22021
- subroutine DMPlexGetGradientDM(719,22246
- subroutine DMPlexReconstructGradientsFVM(726,22437
- subroutine DMPlexCreateGmsh(733,22647
- subroutine DMPlexCreateClosureIndex(741,22898
- subroutine DMPlexSetMigrationSF(747,23104
- subroutine DMPlexGetMigrationSF(753,23287
- subroutine DMPlexSetGlobalToNaturalSF(759,23470
- subroutine DMPlexGetGlobalToNaturalSF(765,23665
- subroutine DMPlexCreateGlobalToNaturalSF(771,23860
- subroutine DMPlexGlobalToNaturalBegin(779,24143
- subroutine DMPlexGlobalToNaturalEnd(786,24347
- subroutine DMPlexNaturalToGlobalBegin(793,24547
- subroutine DMPlexNaturalToGlobalEnd(800,24751
- subroutine DMPlexCreateNaturalVector(807,24951
- subroutine DMPlexOrientPoint(813,25132
- subroutine DMPlexOrient(820,25333
- subroutine PetscPartitionerDMPlexPartition(825,25462
- subroutine DMPlexGetPartitioner(834,25791
- subroutine DMPlexSetPartitioner(840,25983
- subroutine DMPlexPartitionLabelClosure(846,26175
- subroutine DMPlexPartitionLabelAdjacency(852,26372
- subroutine DMPlexPartitionLabelPropagate(858,26573
- subroutine DMPlexPartitionLabelInvert(864,26774
- subroutine DMPlexPartitionLabelCreateSF(872,27036
- subroutine DMPlexRebalanceSharedPoints(879,27273
- subroutine DMPlexGetPointLocal(888,27562
- subroutine DMPlexGetPointLocalField(896,27798
- subroutine DMPlexGetPointGlobal(905,28075
- subroutine DMPlexGetPointGlobalField(913,28313
- subroutine DMPlexGetActivePoint(922,28592
- subroutine DMPlexSetActivePoint(928,28768
- subroutine DMPlexCreateProcessSF(934,28944
- subroutine DMPlexCreateCoarsePointIS(942,29181
- subroutine DMPlexSetRefinementUniform(948,29359
- subroutine DMPlexGetRefinementUniform(954,29549
- subroutine DMPlexSetRefinementLimit(960,29739
- subroutine DMPlexGetRefinementLimit(966,29925
- subroutine DMPlexSetRefinementFunction(972,30111
- subroutine DMPlexGetRefinementFunction(978,30314
- subroutine DMPlexMarkBoundaryFaces(984,30517
- subroutine DMPlexLabelComplete(991,30737
- subroutine DMPlexLabelAddCells(997,30918
- subroutine DMPlexLabelAddFaceCells(1003,31099
- subroutine DMPlexLabelClearCells(1009,31288
- subroutine DMPlexLabelCohesiveComplete(1015,31473
- subroutine DMPlexCreateHybridMesh(1025,31782
- subroutine DMPlexGetOrientedFace(1037,32125
- subroutine DMPlexCreateSubmesh(1050,32538
- subroutine DMPlexFilter(1059,32802
- subroutine DMPlexGetSubpointMap(1067,33019
- subroutine DMPlexSetSubpointMap(1073,33202
- subroutine DMPlexGetSubpointIS(1079,33385
- subroutine DMGetEnclosureRelation(1085,33551
- subroutine DMGetEnclosurePoint(1092,33764
- subroutine DMPlexSetReferenceTree(1101,34033
- subroutine DMPlexGetReferenceTree(1107,34201
- subroutine DMPlexReferenceTreeGetChildSymmetry(1113,34369
- subroutine DMPlexCreateDefaultReferenceTree(1125,34761
- subroutine DMPlexSetTree(1133,35025
- subroutine DMPlexGetTree(1141,35279
- subroutine DMPlexGetTreeParent(1151,35607
- subroutine DMPlexTransferVecTree(1159,35843
- subroutine DMPlexIsSimplex(1173,36251
- subroutine DMPlexGetSimplexOrBoxCells(1179,36419
- subroutine DMPlexVecView1D(1187,36669
- subroutine DMPlexTopologyView(1195,36915
- subroutine DMPlexCoordinatesView(1201,37106
- subroutine DMPlexLabelsView(1207,37303
- subroutine DMPlexSectionView(1213,37490
- subroutine DMPlexGlobalVectorView(1220,37698
- subroutine DMPlexLocalVectorView(1228,37942
- subroutine DMPlexTopologyLoad(1236,38184
- subroutine DMPlexCoordinatesLoad(1243,38413
- subroutine DMPlexLabelsLoad(1250,38648
- subroutine DMPlexSectionLoad(1257,38873
- subroutine DMPlexGlobalVectorLoad(1267,39177
- subroutine DMPlexLocalVectorLoad(1276,39459
- subroutine DMPlexGetSubdomainSection(1285,39739
- subroutine DMPlexGetChart(1291,39947
- subroutine DMPlexSetChart(1298,40142
- subroutine DMPlexGetConeSize(1305,40337
- subroutine DMPlexSetConeSize(1312,40538
- subroutine DMPlexAddConeSize(1319,40739
- subroutine DMPlexGetConeRecursiveVertices(1326,40940
- subroutine DMPlexGetConeRecursive(1333,41147
- subroutine DMPlexRestoreConeRecursive(1342,41430
- subroutine DMPlexSetCone(1351,41721
- subroutine DMPlexSetConeOrientation(1358,41918
- subroutine DMPlexInsertCone(1365,42137
- subroutine DMPlexInsertConeOrientation(1373,42367
- subroutine DMPlexGetSupportSize(1381,42619
- subroutine DMPlexSetSupportSize(1388,42826
- subroutine DMPlexSetSupport(1395,43033
- subroutine DMPlexInsertSupport(1402,43236
- subroutine DMPlexGetMaxSizes(1410,43472
- subroutine DMPlexSymmetrize(1417,43673
- subroutine DMPlexStratify(1422,43810
- subroutine DMPlexComputeCellTypes(1427,43943
- subroutine DMPlexGetDepthLabel(1432,44092
- subroutine DMPlexGetDepth(1438,44273
- subroutine DMPlexGetDepthStratum(1444,44437
- subroutine DMPlexGetHeightStratum(1452,44677
- subroutine DMPlexGetPointDepth(1460,44919
- subroutine DMPlexGetPointHeight(1467,45124
- subroutine DMPlexGetCellTypeLabel(1474,45331
- subroutine DMPlexGetCellType(1480,45518
- subroutine DMPlexSetCellType(1487,45731
- subroutine DMPlexSetClosurePermutationTensor(1494,45944
- subroutine DMPlexGetGhostCellStratum(1501,46199
- subroutine DMPlexGetCellNumbering(1508,46416
- subroutine DMPlexGetVertexNumbering(1514,46588
- subroutine DMPlexCreatePointNumbering(1520,46764
- subroutine DMPlexCreateRankField(1526,46944
- subroutine DMPlexCreateLabelField(1532,47117
- subroutine DMPlexCheckSymmetry(1539,47330
- subroutine DMPlexCheckSkeleton(1544,47473
- subroutine DMPlexCheckFaces(1550,47647
- subroutine DMPlexCheckGeometry(1556,47815
- subroutine DMPlexCheckPointSF(1561,47958
- subroutine DMPlexCheck(1568,48170
- subroutine DMPlexCheckCellShape(1573,48297
- subroutine DMPlexComputeOrthogonalQuality(1580,48508
- subroutine DMPlexGetRegularRefinement(1589,48799
- subroutine DMPlexSetRegularRefinement(1595,48989
- subroutine DMPlexGetAnchors(1601,49179
- subroutine DMPlexSetAnchors(1608,49392
- subroutine PetscViewerExodusIIGetId(1615,49605
- subroutine PetscViewerExodusIISetOrder(1621,49810
- subroutine PetscViewerExodusIIGetOrder(1627,50027
- subroutine DMPlexCreateExodus(1633,50244
- subroutine DMPlexSnapToGeomModel(1641,50480
- subroutine DMPlexInflateToGeomModel(1650,50771
- subroutine DMPlexFindVertices(1655,50924
- subroutine DMPlexComputeProjection3Dto2D(1663,51147
- subroutine DMPlexComputeGeometryFEM(1669,51382
- subroutine DMPlexComputeGeometryFVM(1675,51561
- subroutine DMPlexComputeGradientFVM(1682,51761
- subroutine DMPlexGetDataFVM(1691,52009
- subroutine DMPlexCoordinatesToReference(1700,52241
- subroutine DMPlexReferenceToCoordinates(1709,52538
+ subroutine DMPlexMetricSetIsotropic(112,3454
+ subroutine DMPlexMetricIsIsotropic(118,3640
+ subroutine DMPlexMetricSetUniform(124,3824
+ subroutine DMPlexMetricIsUniform(130,4006
+ subroutine DMPlexMetricSetRestrictAnisotropyFirst(136,4186
+ subroutine DMPlexMetricRestrictAnisotropyFirst(142,4400
+ subroutine DMPlexMetricSetNoInsertion(148,4608
+ subroutine DMPlexMetricNoInsertion(154,4798
+ subroutine DMPlexMetricSetNoSwapping(160,4982
+ subroutine DMPlexMetricNoSwapping(166,5170
+ subroutine DMPlexMetricSetNoMovement(172,5352
+ subroutine DMPlexMetricNoMovement(178,5540
+ subroutine DMPlexMetricSetNoSurf(184,5722
+ subroutine DMPlexMetricNoSurf(190,5902
+ subroutine DMPlexMetricSetMinimumMagnitude(196,6076
+ subroutine DMPlexMetricGetMinimumMagnitude(202,6276
+ subroutine DMPlexMetricSetMaximumMagnitude(208,6476
+ subroutine DMPlexMetricGetMaximumMagnitude(214,6676
+ subroutine DMPlexMetricSetMaximumAnisotropy(220,6876
+ subroutine DMPlexMetricGetMaximumAnisotropy(226,7078
+ subroutine DMPlexMetricSetTargetComplexity(232,7280
+ subroutine DMPlexMetricGetTargetComplexity(238,7480
+ subroutine DMPlexMetricSetNormalizationOrder(244,7680
+ subroutine DMPlexMetricGetNormalizationOrder(250,7884
+ subroutine DMPlexMetricSetGradationFactor(256,8088
+ subroutine DMPlexMetricGetGradationFactor(262,8286
+ subroutine DMPlexMetricSetHausdorffNumber(268,8484
+ subroutine DMPlexMetricGetHausdorffNumber(274,8682
+ subroutine DMPlexMetricSetVerbosity(280,8880
+ subroutine DMPlexMetricGetVerbosity(286,9064
+ subroutine DMPlexMetricSetNumIterations(292,9248
+ subroutine DMPlexMetricGetNumIterations(298,9440
+ subroutine DMPlexMetricCreate(304,9632
+ subroutine DMPlexMetricCreateUniform(311,9830
+ subroutine DMPlexMetricCreateIsotropic(319,10075
+ subroutine DMPlexMetricDeterminantCreate(327,10312
+ subroutine DMPlexMetricEnforceSPD(335,10551
+ subroutine DMPlexMetricNormalize(345,10834
+ subroutine DMPlexMetricAverage(355,11115
+ subroutine DMPlexMetricAverage2(364,11377
+ subroutine DMPlexMetricAverage3(372,11590
+ subroutine DMPlexMetricIntersection(381,11824
+ subroutine DMPlexMetricIntersection2(389,12059
+ subroutine DMPlexMetricIntersection3(397,12282
+ subroutine DMPlexGetOrdering(406,12526
+ subroutine DMPlexGetOrdering1D(414,12771
+ subroutine DMPlexPermute(420,12937
+ subroutine DMPlexReorderSetDefault(427,13110
+ subroutine DMPlexReorderGetDefault(433,13324
+ subroutine DMPlexCreateCGNS(439,13538
+ subroutine DMPlexGetScale(447,13770
+ subroutine DMPlexSetScale(454,13969
+ subroutine DMPlexCreateRigidBody(461,14168
+ subroutine DMPlexCreateRigidBodies(468,14399
+ subroutine DMPlexSetMaxProjectionHeight(478,14742
+ subroutine DMPlexGetMaxProjectionHeight(484,14934
+ subroutine DMPlexGlobalToLocalBasis(490,15126
+ subroutine DMPlexLocalToGlobalBasis(496,15305
+ subroutine DMPlexCreateBasisRotation(502,15484
+ subroutine DMPlexInsertBoundaryValues(510,15738
+ subroutine DMPlexInsertTimeDerivativeBoundaryValues(521,16050
+ subroutine DMPlexComputeClementInterpolant(533,16398
+ subroutine DMPlexComputeGradientClementInterpolant(540,16612
+ subroutine DMPlexGetGeometryFVM(547,16842
+ subroutine DMPlexGetGradientDM(555,17067
+ subroutine DMPlexReconstructGradientsFVM(562,17258
+ subroutine DMPlexCreateClosureIndex(569,17468
+ subroutine DMPlexSetMigrationSF(575,17674
+ subroutine DMPlexGetMigrationSF(581,17857
+ subroutine DMPlexSetGlobalToNaturalSF(587,18040
+ subroutine DMPlexGetGlobalToNaturalSF(593,18235
+ subroutine DMPlexCreateGlobalToNaturalSF(599,18430
+ subroutine DMPlexGlobalToNaturalBegin(607,18713
+ subroutine DMPlexGlobalToNaturalEnd(614,18917
+ subroutine DMPlexNaturalToGlobalBegin(621,19117
+ subroutine DMPlexNaturalToGlobalEnd(628,19321
+ subroutine DMPlexCreateNaturalVector(635,19521
+ subroutine DMPlexOrientPoint(641,19702
+ subroutine DMPlexOrient(648,19903
+ subroutine PetscPartitionerDMPlexPartition(653,20032
+ subroutine DMPlexGetPartitioner(662,20361
+ subroutine DMPlexSetPartitioner(668,20553
+ subroutine DMPlexPartitionLabelClosure(674,20745
+ subroutine DMPlexPartitionLabelAdjacency(680,20942
+ subroutine DMPlexPartitionLabelPropagate(686,21143
+ subroutine DMPlexPartitionLabelInvert(692,21344
+ subroutine DMPlexPartitionLabelCreateSF(700,21606
+ subroutine DMPlexRebalanceSharedPoints(707,21843
+ subroutine DMPlexGetPointLocal(716,22132
+ subroutine DMPlexGetPointLocalField(724,22368
+ subroutine DMPlexGetPointGlobal(733,22645
+ subroutine DMPlexGetPointGlobalField(741,22883
+ subroutine DMPlexGetActivePoint(750,23162
+ subroutine DMPlexSetActivePoint(756,23338
+ subroutine DMPlexCreateProcessSF(762,23514
+ subroutine DMPlexCreateCoarsePointIS(770,23751
+ subroutine DMPlexSetRefinementUniform(776,23929
+ subroutine DMPlexGetRefinementUniform(782,24119
+ subroutine DMPlexSetRefinementLimit(788,24309
+ subroutine DMPlexGetRefinementLimit(794,24495
+ subroutine DMPlexSetRefinementFunction(800,24681
+ subroutine DMPlexGetRefinementFunction(806,24884
+ subroutine DMPlexMarkBoundaryFaces(812,25087
+ subroutine DMPlexLabelComplete(819,25307
+ subroutine DMPlexLabelAddCells(825,25488
+ subroutine DMPlexLabelAddFaceCells(831,25669
+ subroutine DMPlexLabelClearCells(837,25858
+ subroutine DMPlexLabelCohesiveComplete(843,26043
+ subroutine DMPlexCreateHybridMesh(853,26352
+ subroutine DMPlexGetOrientedFace(865,26695
+ subroutine DMPlexCreateSubmesh(878,27108
+ subroutine DMPlexFilter(887,27372
+ subroutine DMPlexGetSubpointMap(895,27589
+ subroutine DMPlexSetSubpointMap(901,27772
+ subroutine DMPlexGetSubpointIS(907,27955
+ subroutine DMGetEnclosureRelation(913,28121
+ subroutine DMGetEnclosurePoint(920,28334
+ subroutine DMPlexSetReferenceTree(929,28603
+ subroutine DMPlexGetReferenceTree(935,28771
+ subroutine DMPlexReferenceTreeGetChildSymmetry(941,28939
+ subroutine DMPlexCreateDefaultReferenceTree(953,29331
+ subroutine DMPlexSetTree(961,29595
+ subroutine DMPlexGetTree(969,29849
+ subroutine DMPlexGetTreeParent(979,30177
+ subroutine DMPlexTransferVecTree(987,30413
+ subroutine PetscViewerExodusIIGetId(1001,30821
+ subroutine PetscViewerExodusIISetOrder(1007,31026
+ subroutine PetscViewerExodusIIGetOrder(1013,31243
+ subroutine DMPlexCreateExodus(1019,31460
+ subroutine DMPlexSnapToGeomModel(1027,31696
+ subroutine DMPlexInflateToGeomModel(1036,31987
+ subroutine DMPlexFindVertices(1041,32140
+ subroutine DMPlexComputeProjection3Dto2D(1049,32363
+ subroutine DMPlexComputeGeometryFEM(1055,32598
+ subroutine DMPlexComputeGeometryFVM(1061,32777
+ subroutine DMPlexComputeGradientFVM(1068,32977
+ subroutine DMPlexGetDataFVM(1077,33225
+ subroutine DMPlexCoordinatesToReference(1086,33457
+ subroutine DMPlexReferenceToCoordinates(1095,33754
+ subroutine DMPlexIsSimplex(1104,34051
+ subroutine DMPlexGetSimplexOrBoxCells(1110,34219
+ subroutine DMPlexVecView1D(1118,34469
+ subroutine DMPlexTopologyView(1126,34715
+ subroutine DMPlexCoordinatesView(1132,34906
+ subroutine DMPlexLabelsView(1138,35103
+ subroutine DMPlexSectionView(1144,35290
+ subroutine DMPlexGlobalVectorView(1151,35498
+ subroutine DMPlexLocalVectorView(1159,35742
+ subroutine DMPlexTopologyLoad(1167,35984
+ subroutine DMPlexCoordinatesLoad(1174,36213
+ subroutine DMPlexLabelsLoad(1181,36448
+ subroutine DMPlexSectionLoad(1188,36673
+ subroutine DMPlexGlobalVectorLoad(1198,36977
+ subroutine DMPlexLocalVectorLoad(1207,37259
+ subroutine DMPlexGetSubdomainSection(1216,37539
+ subroutine DMPlexGetChart(1222,37747
+ subroutine DMPlexSetChart(1229,37942
+ subroutine DMPlexGetConeSize(1236,38137
+ subroutine DMPlexSetConeSize(1243,38338
+ subroutine DMPlexAddConeSize(1250,38539
+ subroutine DMPlexGetConeRecursiveVertices(1257,38740
+ subroutine DMPlexGetConeRecursive(1264,38947
+ subroutine DMPlexRestoreConeRecursive(1273,39230
+ subroutine DMPlexSetCone(1282,39521
+ subroutine DMPlexSetConeOrientation(1289,39718
+ subroutine DMPlexInsertCone(1296,39937
+ subroutine DMPlexInsertConeOrientation(1304,40167
+ subroutine DMPlexGetSupportSize(1312,40419
+ subroutine DMPlexSetSupportSize(1319,40626
+ subroutine DMPlexSetSupport(1326,40833
+ subroutine DMPlexInsertSupport(1333,41036
+ subroutine DMPlexGetMaxSizes(1341,41272
+ subroutine DMPlexSymmetrize(1348,41473
+ subroutine DMPlexStratify(1353,41610
+ subroutine DMPlexComputeCellTypes(1358,41743
+ subroutine DMPlexGetDepthLabel(1363,41892
+ subroutine DMPlexGetDepth(1369,42073
+ subroutine DMPlexGetDepthStratum(1375,42237
+ subroutine DMPlexGetHeightStratum(1383,42477
+ subroutine DMPlexGetPointDepth(1391,42719
+ subroutine DMPlexGetPointHeight(1398,42924
+ subroutine DMPlexGetCellTypeLabel(1405,43131
+ subroutine DMPlexGetCellType(1411,43318
+ subroutine DMPlexSetCellType(1418,43531
+ subroutine DMPlexSetClosurePermutationTensor(1425,43744
+ subroutine DMPlexGetGhostCellStratum(1432,43999
+ subroutine DMPlexGetCellNumbering(1439,44216
+ subroutine DMPlexGetVertexNumbering(1445,44388
+ subroutine DMPlexCreatePointNumbering(1451,44564
+ subroutine DMPlexCreateRankField(1457,44744
+ subroutine DMPlexCreateLabelField(1463,44917
+ subroutine DMPlexCheckSymmetry(1470,45130
+ subroutine DMPlexCheckSkeleton(1475,45273
+ subroutine DMPlexCheckFaces(1481,45447
+ subroutine DMPlexCheckGeometry(1487,45615
+ subroutine DMPlexCheckPointSF(1492,45758
+ subroutine DMPlexCheck(1499,45970
+ subroutine DMPlexCheckCellShape(1504,46097
+ subroutine DMPlexComputeOrthogonalQuality(1511,46308
+ subroutine DMPlexGetRegularRefinement(1520,46599
+ subroutine DMPlexSetRegularRefinement(1526,46789
+ subroutine DMPlexGetAnchors(1532,46979
+ subroutine DMPlexSetAnchors(1539,47192
+ subroutine DMPlexCheckInterfaceCones(1546,47405
+ subroutine DMPlexCreateDoublet(1551,47560
+ subroutine DMPlexCreateWedgeBoxMesh(1561,47864
+ subroutine DMPlexCreateHexCylinderMesh(1573,48270
+ subroutine DMPlexCreateWedgeCylinderMesh(1580,48503
+ subroutine DMPlexCreateTPSMesh(1588,48761
+ subroutine DMPlexCreateSphereMesh(1601,49186
+ subroutine DMPlexCreateBallMesh(1610,49463
+ subroutine DMPlexCreateReferenceCell(1618,49703
+ subroutine DMPlexCreate(1625,49932
+ subroutine DMPlexCreateFromCellListParallelPetsc(1631,50092
+ subroutine DMPlexCreateFromCellListPetsc(1649,50670
+ subroutine DMPlexCreateFromDAG(1663,51124
+ subroutine DMPlexCreateGmsh(1674,51479
+ subroutine DMPlexInterpolatePointSF(1682,51730
+ subroutine DMPlexInterpolate(1688,51921
+ subroutine DMPlexCopyCoordinates(1694,52079
+ subroutine DMPlexUninterpolate(1700,52245
+ subroutine DMPlexIsInterpolated(1706,52407
+ subroutine DMPlexIsInterpolatedCollective(1712,52611
subroutine DMPlexTransformExtrudeGetLayers(1718,52835
subroutine DMPlexTransformExtrudeSetLayers(1724,53072
subroutine DMPlexTransformExtrudeGetThickness(1730,53309
@@ -56021,40 +56021,40 @@
petscdmpatch.h90:^?petscdmpatch.h90^A,1
subroutine DMPatchCreate(1,0
-src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90,1635
+src/dm/f90-mod/ftn-auto-interfaces/petscdmnetwork.h90,1636
petscdmnetwork.h90:^?petscdmnetwork.h90^A,1
- subroutine DMNetworkCreate(1,0
- subroutine DMNetworkMonitorCreate(7,166
- subroutine DMNetworkMonitorDestroy(13,362
- subroutine DMNetworkMonitorPop(17,523
- subroutine DMNetworkMonitorView(21,676
- subroutine DMNetworkGetPlex(27,871
- subroutine DMNetworkGetNumSubNetworks(33,1027
- subroutine DMNetworkSetNumSubNetworks(40,1246
- subroutine DMNetworkAddSubnetwork(47,1465
- subroutine DMNetworkLayoutSetUp(56,1739
- subroutine DMNetworkAddSharedVertices(61,1884
- subroutine DMNetworkGetVertexRange(71,2204
- subroutine DMNetworkGetEdgeRange(78,2417
- subroutine DMNetworkGetGlobalEdgeIndex(85,2626
- subroutine DMNetworkGetGlobalVertexIndex(92,2847
- subroutine DMNetworkGetNumComponents(99,3072
- subroutine DMNetworkGetLocalVecOffset(106,3289
- subroutine DMNetworkGetGlobalVecOffset(114,3539
- subroutine DMNetworkGetEdgeOffset(122,3791
- subroutine DMNetworkGetVertexOffset(129,4002
- subroutine DMNetworkAssembleGraphStructures(136,4217
- subroutine DMNetworkDistribute(141,4386
- subroutine DMNetworkIsSharedVertex(147,4560
- subroutine DMNetworkIsGhostVertex(154,4775
- subroutine DMNetworkHasJacobian(161,4988
- subroutine DMNetworkEdgeSetMatrix(168,5199
- subroutine DMNetworkVertexSetMatrix(175,5409
- subroutine DMNetworkGetVertexLocalToGlobalOrdering(182,5623
- subroutine DMNetworkSetVertexLocalToGlobalOrdering(189,5868
- subroutine DMNetworkCreateIS(194,6051
- subroutine DMNetworkCreateLocalIS(205,6384
- subroutine DMNetworkFinalizeComponents(216,6727
+ subroutine DMNetworkMonitorCreate(1,0
+ subroutine DMNetworkMonitorDestroy(7,196
+ subroutine DMNetworkMonitorPop(11,357
+ subroutine DMNetworkMonitorView(15,510
+ subroutine DMNetworkGetPlex(21,705
+ subroutine DMNetworkGetNumSubNetworks(27,861
+ subroutine DMNetworkSetNumSubNetworks(34,1080
+ subroutine DMNetworkAddSubnetwork(41,1299
+ subroutine DMNetworkLayoutSetUp(50,1573
+ subroutine DMNetworkAddSharedVertices(55,1718
+ subroutine DMNetworkGetVertexRange(65,2038
+ subroutine DMNetworkGetEdgeRange(72,2251
+ subroutine DMNetworkGetGlobalEdgeIndex(79,2460
+ subroutine DMNetworkGetGlobalVertexIndex(86,2681
+ subroutine DMNetworkGetNumComponents(93,2906
+ subroutine DMNetworkGetLocalVecOffset(100,3123
+ subroutine DMNetworkGetGlobalVecOffset(108,3373
+ subroutine DMNetworkGetEdgeOffset(116,3625
+ subroutine DMNetworkGetVertexOffset(123,3836
+ subroutine DMNetworkAssembleGraphStructures(130,4051
+ subroutine DMNetworkDistribute(135,4220
+ subroutine DMNetworkIsSharedVertex(141,4394
+ subroutine DMNetworkIsGhostVertex(148,4609
+ subroutine DMNetworkHasJacobian(155,4822
+ subroutine DMNetworkEdgeSetMatrix(162,5033
+ subroutine DMNetworkVertexSetMatrix(169,5243
+ subroutine DMNetworkGetVertexLocalToGlobalOrdering(176,5457
+ subroutine DMNetworkSetVertexLocalToGlobalOrdering(183,5702
+ subroutine DMNetworkCreateIS(188,5885
+ subroutine DMNetworkCreateLocalIS(199,6218
+ subroutine DMNetworkFinalizeComponents(210,6561
+ subroutine DMNetworkCreate(215,6720
src/dm/f90-mod/ftn-auto-interfaces/petscdmforest.h90,1777
petscdmforest.h90:^?petscdmforest.h90^A,1
@@ -56093,7 +56093,7 @@
subroutine DMForestSetWeightCapacity(197,6073
subroutine DMForestGetWeightCapacity(203,6261
-src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90,2542
+src/dm/f90-mod/ftn-auto-interfaces/petscdmda.h90,2544
petscdmda.h90:^?petscdmda.h90^A,1
subroutine DMDASetSizes(1,0
subroutine DMDASetNumProcs(9,222
@@ -56118,36 +56118,36 @@
subroutine DMDASetRefinementFactor(153,4576
subroutine DMDAMapMatStencilToGlobal(161,4820
subroutine DMDASetGLLCoordinates(169,5080
- subroutine DMDAGetReducedDMDA(176,5291
- subroutine DMDACreateCompatibleDMDA(183,5482
- subroutine DMDACreate(190,5685
- subroutine DMDACreatePatchIS(196,5841
- subroutine DMDACreateNaturalVector(205,6106
- subroutine DMDAConvertToCell(211,6283
- subroutine DMDAGetElementsCorners(218,6488
- subroutine DMDAGetElementsSizes(226,6730
- subroutine DMDASetElementType(234,6968
- subroutine DMDAGetElementType(240,7154
- subroutine DMDAGetSubdomainCornersIS(246,7340
- subroutine DMDARestoreSubdomainCornersIS(252,7518
- subroutine DMDAGlobalToNaturalBegin(258,7704
- subroutine DMDAGlobalToNaturalEnd(266,7939
- subroutine DMDANaturalToGlobalBegin(274,8170
- subroutine DMDANaturalToGlobalEnd(282,8405
- subroutine DMDAGlobalToNaturalAllCreate(290,8636
- subroutine DMDANaturalAllToGlobalCreate(296,8844
- subroutine DMDAGetAO(302,9052
- subroutine DMCreateAggregates(308,9194
- subroutine DMDACreateAggregates(315,9380
- subroutine DMDAGetNumCells(322,9570
- subroutine DMDAGetCellPoint(331,9829
- subroutine DMDASetPreallocationCenterDimension(340,10090
- subroutine DMDAGetPreallocationCenterDimension(346,10296
- subroutine DMDAGetLogicalCoordinate(352,10502
- subroutine DMDAGetRay(366,10970
- subroutine DMDASetBlockFills(375,11236
- subroutine DMDASetBlockFillsSparse(382,11437
- subroutine DMDASetUniformCoordinates(389,11650
+ subroutine DMDACreate(176,5291
+ subroutine DMDACreatePatchIS(182,5447
+ subroutine DMDACreateNaturalVector(191,5712
+ subroutine DMDAGetElementsCorners(197,5889
+ subroutine DMDAGetElementsSizes(205,6131
+ subroutine DMDASetElementType(213,6369
+ subroutine DMDAGetElementType(219,6555
+ subroutine DMDAGetSubdomainCornersIS(225,6741
+ subroutine DMDARestoreSubdomainCornersIS(231,6919
+ subroutine DMDAGlobalToNaturalAllCreate(237,7105
+ subroutine DMDANaturalAllToGlobalCreate(243,7313
+ subroutine DMDAGetAO(249,7521
+ subroutine DMDAGetNumCells(255,7663
+ subroutine DMDAGetCellPoint(264,7922
+ subroutine DMDASetPreallocationCenterDimension(273,8183
+ subroutine DMDAGetPreallocationCenterDimension(279,8389
+ subroutine DMDAGetLogicalCoordinate(285,8595
+ subroutine DMDAGetRay(299,9063
+ subroutine DMDASetBlockFills(308,9329
+ subroutine DMDASetBlockFillsSparse(315,9530
+ subroutine DMDASetUniformCoordinates(322,9743
+ subroutine DMDAGetReducedDMDA(333,10096
+ subroutine DMDACreateCompatibleDMDA(340,10287
+ subroutine DMDAConvertToCell(347,10490
+ subroutine DMDAGlobalToNaturalBegin(354,10695
+ subroutine DMDAGlobalToNaturalEnd(362,10930
+ subroutine DMDANaturalToGlobalBegin(370,11161
+ subroutine DMDANaturalToGlobalEnd(378,11396
+ subroutine DMCreateAggregates(386,11627
+ subroutine DMDACreateAggregates(393,11813
src/dm/f90-mod/ftn-auto-interfaces/petscdm.h90,8491
petscdm.h90:^?petscdm.h90^A,1
@@ -56188,143 +56188,143 @@
subroutine DMClearGlobalVectors(223,6756
subroutine DMClearLocalVectors(228,6901
subroutine DMRestoreGlobalVector(233,7044
- subroutine DMCreate(239,7217
- subroutine DMClone(245,7369
- subroutine VecGetDM(251,7507
- subroutine VecSetDM(257,7654
- subroutine MatGetDM(263,7801
- subroutine MatSetDM(269,7948
- subroutine DMSetUp(275,8095
- subroutine DMSetFromOptions(280,8214
- subroutine DMCreateGlobalVector(285,8351
- subroutine DMCreateLocalVector(291,8522
- subroutine DMGetLocalToGlobalMapping(297,8691
- subroutine DMGetBlockSize(303,8905
- subroutine DMCreateInterpolationScale(309,9069
- subroutine DMCreateRestriction(317,9297
- subroutine DMCreateInjection(324,9485
- subroutine DMCreateMassMatrix(331,9669
- subroutine DMCreateMassMatrixLumped(338,9855
- subroutine DMCreateColoring(344,10034
- subroutine DMCreateMatrix(351,10261
- subroutine DMSetMatrixPreallocateSkip(357,10420
- subroutine DMSetMatrixPreallocateOnly(363,10610
- subroutine DMSetMatrixStructureOnly(369,10800
- subroutine DMRefine(375,10986
- subroutine DMInterpolate(382,11156
- subroutine DMInterpolateSolution(389,11332
- subroutine DMGetRefineLevel(398,11571
- subroutine DMSetRefineLevel(404,11739
- subroutine DMExtrude(410,11907
- subroutine DMHasBasisTransform(417,12080
- subroutine DMGlobalToLocal(423,12256
- subroutine DMGlobalToLocalBegin(431,12473
- subroutine DMGlobalToLocalEnd(439,12700
- subroutine DMLocalToGlobal(447,12923
- subroutine DMLocalToGlobalBegin(455,13140
- subroutine DMLocalToGlobalEnd(463,13367
- subroutine DMLocalToLocalBegin(471,13590
- subroutine DMLocalToLocalEnd(479,13815
- subroutine DMCoarsen(487,14036
- subroutine DMRestrict(494,14208
- subroutine DMSubDomainRestrict(503,14425
- subroutine DMGetCoarsenLevel(511,14669
- subroutine DMSetCoarsenLevel(517,14839
- subroutine DMHasVariableBounds(523,15009
- subroutine DMHasColoring(529,15185
- subroutine DMHasCreateRestriction(535,15349
- subroutine DMHasCreateInjection(541,15531
- subroutine DMGetSection(547,15709
- subroutine DMGetLocalSection(553,15891
- subroutine DMSetSection(559,16083
- subroutine DMSetLocalSection(565,16265
- subroutine DMGetDefaultConstraints(571,16457
- subroutine DMSetDefaultConstraints(579,16713
- subroutine DMGetGlobalSection(587,16969
- subroutine DMSetGlobalSection(593,17163
- subroutine DMGetSectionSF(599,17357
- subroutine DMSetSectionSF(605,17528
- subroutine DMGetPointSF(611,17699
- subroutine DMSetPointSF(617,17866
- subroutine DMGetNaturalSF(623,18033
- subroutine DMSetNaturalSF(629,18204
- subroutine DMClearFields(635,18375
- subroutine DMGetNumFields(640,18506
- subroutine DMSetNumFields(646,18670
- subroutine DMGetField(652,18834
- subroutine DMSetField(660,19065
- subroutine DMAddField(668,19296
- subroutine DMSetFieldAvoidTensor(675,19496
- subroutine DMGetFieldAvoidTensor(682,19707
- subroutine DMCopyFields(689,19918
- subroutine DMGetAdjacency(695,20066
- subroutine DMSetAdjacency(703,20296
- subroutine DMGetBasicAdjacency(711,20526
- subroutine DMSetBasicAdjacency(718,20735
- subroutine DMGetNumDS(725,20944
- subroutine DMClearDS(731,21100
- subroutine DMGetDS(736,21223
- subroutine DMGetCellDS(742,21371
- subroutine DMGetRegionDS(749,21558
- subroutine DMSetRegionDS(757,21779
- subroutine DMGetRegionNumDS(765,22000
- subroutine DMSetRegionNumDS(774,22258
- subroutine DMFindRegionNum(783,22516
- subroutine DMCreateDS(790,22711
- subroutine DMComputeExactSolution(795,22836
- subroutine DMCopyDS(803,23065
- subroutine DMCopyDisc(809,23205
- subroutine DMGetDimension(815,23349
- subroutine DMSetDimension(821,23513
- subroutine DMGetDimPoints(827,23677
- subroutine DMGetOutputDM(835,23903
- subroutine DMGetOutputSequenceNumber(841,24053
- subroutine DMSetOutputSequenceNumber(848,24272
- subroutine DMGetUseNatural(855,24491
- subroutine DMSetUseNatural(861,24659
- subroutine DMGetNumLabels(867,24827
- subroutine DMRemoveLabelBySelf(873,24991
- subroutine DMCopyLabels(880,25205
- subroutine DMGetCoarseDM(889,25474
- subroutine DMSetCoarseDM(895,25624
- subroutine DMGetFineDM(901,25774
- subroutine DMSetFineDM(907,25920
- subroutine MatFDColoringUseDM(913,26066
- subroutine DMGetCompatibility(919,26266
- subroutine DMMonitorCancel(927,26492
- subroutine DMMonitor(932,26627
- subroutine DMComputeError(937,26750
- subroutine DMGetNumAuxiliaryVec(945,26967
- subroutine DMGetAuxiliaryVec(951,27143
- subroutine DMSetAuxiliaryVec(960,27408
- subroutine DMCopyAuxiliaryVec(969,27673
- subroutine DMGetCoordinateDM(975,27833
- subroutine DMSetCoordinateDM(981,27991
- subroutine DMGetCellCoordinateDM(987,28149
- subroutine DMSetCellCoordinateDM(993,28315
- subroutine DMGetCoordinateDim(999,28481
- subroutine DMSetCoordinateDim(1005,28653
- subroutine DMGetCoordinateSection(1011,28825
- subroutine DMSetCoordinateSection(1017,29027
- subroutine DMGetCellCoordinateSection(1024,29260
- subroutine DMSetCellCoordinateSection(1030,29470
- subroutine DMGetCoordinates(1037,29711
- subroutine DMSetCoordinates(1043,29874
- subroutine DMGetCellCoordinates(1049,30037
- subroutine DMSetCellCoordinates(1055,30208
- subroutine DMGetCoordinatesLocalSetUp(1061,30379
- subroutine DMGetCoordinatesLocal(1066,30536
- subroutine DMGetCoordinatesLocalNoncollective(1072,30709
- subroutine DMGetCoordinatesLocalTuple(1078,30908
- subroutine DMSetCoordinatesLocal(1086,31167
- subroutine DMGetCellCoordinatesLocalSetUp(1092,31340
- subroutine DMGetCellCoordinatesLocal(1097,31505
- subroutine DMGetCellCoordinatesLocalNoncollective(1103,31686
- subroutine DMSetCellCoordinatesLocal(1109,31893
- subroutine DMGetLocalBoundingBox(1115,32074
- subroutine DMGetBoundingBox(1122,32295
- subroutine DMProjectCoordinates(1129,32506
- subroutine DMLocatePoints(1135,32680
+ subroutine DMGetCoordinateDM(239,7217
+ subroutine DMSetCoordinateDM(245,7375
+ subroutine DMGetCellCoordinateDM(251,7533
+ subroutine DMSetCellCoordinateDM(257,7699
+ subroutine DMGetCoordinateDim(263,7865
+ subroutine DMSetCoordinateDim(269,8037
+ subroutine DMGetCoordinateSection(275,8209
+ subroutine DMSetCoordinateSection(281,8411
+ subroutine DMGetCellCoordinateSection(288,8644
+ subroutine DMSetCellCoordinateSection(294,8854
+ subroutine DMGetCoordinates(301,9095
+ subroutine DMSetCoordinates(307,9258
+ subroutine DMGetCellCoordinates(313,9421
+ subroutine DMSetCellCoordinates(319,9592
+ subroutine DMGetCoordinatesLocalSetUp(325,9763
+ subroutine DMGetCoordinatesLocal(330,9920
+ subroutine DMGetCoordinatesLocalNoncollective(336,10093
+ subroutine DMGetCoordinatesLocalTuple(342,10292
+ subroutine DMSetCoordinatesLocal(350,10551
+ subroutine DMGetCellCoordinatesLocalSetUp(356,10724
+ subroutine DMGetCellCoordinatesLocal(361,10889
+ subroutine DMGetCellCoordinatesLocalNoncollective(367,11070
+ subroutine DMSetCellCoordinatesLocal(373,11277
+ subroutine DMGetLocalBoundingBox(379,11458
+ subroutine DMGetBoundingBox(386,11679
+ subroutine DMProjectCoordinates(393,11890
+ subroutine DMLocatePoints(399,12064
+ subroutine DMCreate(407,12314
+ subroutine DMClone(413,12466
+ subroutine VecGetDM(419,12604
+ subroutine VecSetDM(425,12751
+ subroutine MatGetDM(431,12898
+ subroutine MatSetDM(437,13045
+ subroutine DMSetUp(443,13192
+ subroutine DMSetFromOptions(448,13311
+ subroutine DMCreateGlobalVector(453,13448
+ subroutine DMCreateLocalVector(459,13619
+ subroutine DMGetLocalToGlobalMapping(465,13788
+ subroutine DMGetBlockSize(471,14002
+ subroutine DMCreateInterpolationScale(477,14166
+ subroutine DMCreateRestriction(485,14394
+ subroutine DMCreateInjection(492,14582
+ subroutine DMCreateMassMatrix(499,14766
+ subroutine DMCreateMassMatrixLumped(506,14952
+ subroutine DMCreateColoring(512,15131
+ subroutine DMCreateMatrix(519,15358
+ subroutine DMSetMatrixPreallocateSkip(525,15517
+ subroutine DMSetMatrixPreallocateOnly(531,15707
+ subroutine DMSetMatrixStructureOnly(537,15897
+ subroutine DMRefine(543,16083
+ subroutine DMInterpolate(550,16253
+ subroutine DMInterpolateSolution(557,16429
+ subroutine DMGetRefineLevel(566,16668
+ subroutine DMSetRefineLevel(572,16836
+ subroutine DMExtrude(578,17004
+ subroutine DMHasBasisTransform(585,17177
+ subroutine DMGlobalToLocal(591,17353
+ subroutine DMGlobalToLocalBegin(599,17570
+ subroutine DMGlobalToLocalEnd(607,17797
+ subroutine DMLocalToGlobal(615,18020
+ subroutine DMLocalToGlobalBegin(623,18237
+ subroutine DMLocalToGlobalEnd(631,18464
+ subroutine DMLocalToLocalBegin(639,18687
+ subroutine DMLocalToLocalEnd(647,18912
+ subroutine DMCoarsen(655,19133
+ subroutine DMRestrict(662,19305
+ subroutine DMSubDomainRestrict(671,19522
+ subroutine DMGetCoarsenLevel(679,19766
+ subroutine DMSetCoarsenLevel(685,19936
+ subroutine DMHasVariableBounds(691,20106
+ subroutine DMHasColoring(697,20282
+ subroutine DMHasCreateRestriction(703,20446
+ subroutine DMHasCreateInjection(709,20628
+ subroutine DMGetSection(715,20806
+ subroutine DMGetLocalSection(721,20988
+ subroutine DMSetSection(727,21180
+ subroutine DMSetLocalSection(733,21362
+ subroutine DMGetDefaultConstraints(739,21554
+ subroutine DMSetDefaultConstraints(747,21810
+ subroutine DMGetGlobalSection(755,22066
+ subroutine DMSetGlobalSection(761,22260
+ subroutine DMGetSectionSF(767,22454
+ subroutine DMSetSectionSF(773,22625
+ subroutine DMGetPointSF(779,22796
+ subroutine DMSetPointSF(785,22963
+ subroutine DMGetNaturalSF(791,23130
+ subroutine DMSetNaturalSF(797,23301
+ subroutine DMClearFields(803,23472
+ subroutine DMGetNumFields(808,23603
+ subroutine DMSetNumFields(814,23767
+ subroutine DMGetField(820,23931
+ subroutine DMSetField(828,24162
+ subroutine DMAddField(836,24393
+ subroutine DMSetFieldAvoidTensor(843,24593
+ subroutine DMGetFieldAvoidTensor(850,24804
+ subroutine DMCopyFields(857,25015
+ subroutine DMGetAdjacency(863,25163
+ subroutine DMSetAdjacency(871,25393
+ subroutine DMGetBasicAdjacency(879,25623
+ subroutine DMSetBasicAdjacency(886,25832
+ subroutine DMGetNumDS(893,26041
+ subroutine DMClearDS(899,26197
+ subroutine DMGetDS(904,26320
+ subroutine DMGetCellDS(910,26468
+ subroutine DMGetRegionDS(917,26655
+ subroutine DMSetRegionDS(925,26876
+ subroutine DMGetRegionNumDS(933,27097
+ subroutine DMSetRegionNumDS(942,27355
+ subroutine DMFindRegionNum(951,27613
+ subroutine DMCreateDS(958,27808
+ subroutine DMComputeExactSolution(963,27933
+ subroutine DMCopyDS(971,28162
+ subroutine DMCopyDisc(977,28302
+ subroutine DMGetDimension(983,28446
+ subroutine DMSetDimension(989,28610
+ subroutine DMGetDimPoints(995,28774
+ subroutine DMGetOutputDM(1003,29000
+ subroutine DMGetOutputSequenceNumber(1009,29150
+ subroutine DMSetOutputSequenceNumber(1016,29369
+ subroutine DMGetUseNatural(1023,29588
+ subroutine DMSetUseNatural(1029,29756
+ subroutine DMGetNumLabels(1035,29924
+ subroutine DMRemoveLabelBySelf(1041,30088
+ subroutine DMCopyLabels(1048,30302
+ subroutine DMGetCoarseDM(1057,30571
+ subroutine DMSetCoarseDM(1063,30721
+ subroutine DMGetFineDM(1069,30871
+ subroutine DMSetFineDM(1075,31017
+ subroutine MatFDColoringUseDM(1081,31163
+ subroutine DMGetCompatibility(1087,31363
+ subroutine DMMonitorCancel(1095,31589
+ subroutine DMMonitor(1100,31724
+ subroutine DMComputeError(1105,31847
+ subroutine DMGetNumAuxiliaryVec(1113,32064
+ subroutine DMGetAuxiliaryVec(1119,32240
+ subroutine DMSetAuxiliaryVec(1128,32505
+ subroutine DMCopyAuxiliaryVec(1137,32770
subroutine PetscPartitionerView(1143,32930
subroutine PetscPartitionerSetFromOptions(1149,33149
subroutine PetscPartitionerSetUp(1153,33324
@@ -56403,77 +56403,77 @@
subroutine PetscDTAltVInteriorMatrix(268,9516
subroutine PetscDTAltVInteriorPattern(275,9762
subroutine PetscDTAltVStar(281,9979
- subroutine PetscPDFMaxwellBoltzmann1D(289,10236
- subroutine PetscCDFMaxwellBoltzmann1D(295,10467
- subroutine PetscPDFMaxwellBoltzmann2D(301,10698
- subroutine PetscCDFMaxwellBoltzmann2D(307,10929
- subroutine PetscPDFMaxwellBoltzmann3D(313,11160
- subroutine PetscCDFMaxwellBoltzmann3D(319,11391
- subroutine PetscPDFGaussian1D(325,11622
- subroutine PetscPDFSampleGaussian1D(331,11837
- subroutine PetscPDFGaussian2D(337,12064
- subroutine PetscPDFSampleGaussian2D(343,12279
- subroutine PetscPDFGaussian3D(349,12506
- subroutine PetscPDFSampleGaussian3D(355,12721
- subroutine PetscPDFConstant1D(361,12948
- subroutine PetscCDFConstant1D(367,13163
- subroutine PetscPDFSampleConstant1D(373,13378
- subroutine PetscPDFConstant2D(379,13605
- subroutine PetscCDFConstant2D(385,13820
- subroutine PetscPDFSampleConstant2D(391,14035
- subroutine PetscPDFConstant3D(397,14262
- subroutine PetscCDFConstant3D(403,14477
- subroutine PetscPDFSampleConstant3D(409,14692
- subroutine PetscWeakFormCopy(415,14919
- subroutine PetscWeakFormClear(420,15103
- subroutine PetscWeakFormGetNumFields(424,15248
- subroutine PetscWeakFormSetNumFields(429,15438
- subroutine PetscWeakFormDestroy(434,15628
- subroutine PetscWeakFormCreate(438,15777
- subroutine PetscDSSetFromOptions(443,15955
- subroutine PetscDSDestroy(447,16094
- subroutine PetscDSCreate(451,16219
- subroutine PetscDSGetNumFields(456,16373
- subroutine PetscDSGetSpatialDimension(461,16539
- subroutine PetscDSGetCoordinateDimension(466,16719
- subroutine PetscDSSetCoordinateDimension(471,16905
- subroutine PetscDSIsCohesive(476,17091
- subroutine PetscDSGetNumCohesive(481,17255
- subroutine PetscDSGetCohesive(486,17425
- subroutine PetscDSSetCohesive(492,17622
- subroutine PetscDSGetTotalDimension(498,17819
- subroutine PetscDSGetTotalComponents(503,17995
- subroutine PetscDSGetDiscretization(508,18173
- subroutine PetscDSSetDiscretization(514,18386
- subroutine PetscDSGetWeakForm(520,18599
- subroutine PetscDSSetWeakForm(525,18773
- subroutine PetscDSAddDiscretization(530,18947
- subroutine PetscDSGetQuadrature(535,19129
- subroutine PetscDSGetImplicit(540,19311
- subroutine PetscDSSetImplicit(546,19508
- subroutine PetscDSGetJetDegree(552,19705
- subroutine PetscDSSetJetDegree(558,19902
- subroutine PetscDSHasBdJacobian(564,20099
- subroutine PetscDSHasBdJacobianPreconditioner(569,20269
- subroutine PetscDSGetFieldIndex(574,20467
- subroutine PetscDSGetFieldSize(580,20672
- subroutine PetscDSGetFieldOffset(586,20869
- subroutine PetscDSGetFieldOffsetCohesive(592,21070
- subroutine PetscDSGetDimensions(598,21287
- subroutine PetscDSGetComponents(603,21459
- subroutine PetscDSGetComponentOffset(608,21631
- subroutine PetscDSGetComponentOffsets(614,21840
- subroutine PetscDSGetComponentDerivativeOffsets(619,22024
- subroutine PetscDSGetComponentOffsetsCohesive(624,22228
- subroutine PetscDSGetComponentDerivativeOffsetsCohesive(630,22459
- subroutine PetscDSGetNumBoundary(636,22710
- subroutine PetscDSCopyBoundary(641,22880
- subroutine PetscDSDestroyBoundary(648,23110
- subroutine PetscDSSelectDiscretizations(652,23251
- subroutine PetscDSSelectEquations(659,23499
- subroutine PetscDSCopyEquations(666,23735
- subroutine PetscDSCopyConstants(671,23901
- subroutine PetscDSCopyExactSolutions(676,24067
+ subroutine PetscWeakFormCopy(289,10236
+ subroutine PetscWeakFormClear(294,10420
+ subroutine PetscWeakFormGetNumFields(298,10565
+ subroutine PetscWeakFormSetNumFields(303,10755
+ subroutine PetscWeakFormDestroy(308,10945
+ subroutine PetscWeakFormCreate(312,11094
+ subroutine PetscDSSetFromOptions(317,11272
+ subroutine PetscDSDestroy(321,11411
+ subroutine PetscDSCreate(325,11536
+ subroutine PetscDSGetNumFields(330,11690
+ subroutine PetscDSGetSpatialDimension(335,11856
+ subroutine PetscDSGetCoordinateDimension(340,12036
+ subroutine PetscDSSetCoordinateDimension(345,12222
+ subroutine PetscDSIsCohesive(350,12408
+ subroutine PetscDSGetNumCohesive(355,12572
+ subroutine PetscDSGetCohesive(360,12742
+ subroutine PetscDSSetCohesive(366,12939
+ subroutine PetscDSGetTotalDimension(372,13136
+ subroutine PetscDSGetTotalComponents(377,13312
+ subroutine PetscDSGetDiscretization(382,13490
+ subroutine PetscDSSetDiscretization(388,13703
+ subroutine PetscDSGetWeakForm(394,13916
+ subroutine PetscDSSetWeakForm(399,14090
+ subroutine PetscDSAddDiscretization(404,14264
+ subroutine PetscDSGetQuadrature(409,14446
+ subroutine PetscDSGetImplicit(414,14628
+ subroutine PetscDSSetImplicit(420,14825
+ subroutine PetscDSGetJetDegree(426,15022
+ subroutine PetscDSSetJetDegree(432,15219
+ subroutine PetscDSHasBdJacobian(438,15416
+ subroutine PetscDSHasBdJacobianPreconditioner(443,15586
+ subroutine PetscDSGetFieldIndex(448,15784
+ subroutine PetscDSGetFieldSize(454,15989
+ subroutine PetscDSGetFieldOffset(460,16186
+ subroutine PetscDSGetFieldOffsetCohesive(466,16387
+ subroutine PetscDSGetDimensions(472,16604
+ subroutine PetscDSGetComponents(477,16776
+ subroutine PetscDSGetComponentOffset(482,16948
+ subroutine PetscDSGetComponentOffsets(488,17157
+ subroutine PetscDSGetComponentDerivativeOffsets(493,17341
+ subroutine PetscDSGetComponentOffsetsCohesive(498,17545
+ subroutine PetscDSGetComponentDerivativeOffsetsCohesive(504,17776
+ subroutine PetscDSGetNumBoundary(510,18027
+ subroutine PetscDSCopyBoundary(515,18197
+ subroutine PetscDSDestroyBoundary(522,18427
+ subroutine PetscDSSelectDiscretizations(526,18568
+ subroutine PetscDSSelectEquations(533,18816
+ subroutine PetscDSCopyEquations(540,19052
+ subroutine PetscDSCopyConstants(545,19218
+ subroutine PetscDSCopyExactSolutions(550,19384
+ subroutine PetscPDFMaxwellBoltzmann1D(555,19560
+ subroutine PetscCDFMaxwellBoltzmann1D(561,19791
+ subroutine PetscPDFMaxwellBoltzmann2D(567,20022
+ subroutine PetscCDFMaxwellBoltzmann2D(573,20253
+ subroutine PetscPDFMaxwellBoltzmann3D(579,20484
+ subroutine PetscCDFMaxwellBoltzmann3D(585,20715
+ subroutine PetscPDFGaussian1D(591,20946
+ subroutine PetscPDFSampleGaussian1D(597,21161
+ subroutine PetscPDFGaussian2D(603,21388
+ subroutine PetscPDFSampleGaussian2D(609,21603
+ subroutine PetscPDFGaussian3D(615,21830
+ subroutine PetscPDFSampleGaussian3D(621,22045
+ subroutine PetscPDFConstant1D(627,22272
+ subroutine PetscCDFConstant1D(633,22487
+ subroutine PetscPDFSampleConstant1D(639,22702
+ subroutine PetscPDFConstant2D(645,22929
+ subroutine PetscCDFConstant2D(651,23144
+ subroutine PetscPDFSampleConstant2D(657,23359
+ subroutine PetscPDFConstant3D(663,23586
+ subroutine PetscCDFConstant3D(669,23801
+ subroutine PetscPDFSampleConstant3D(675,24016
src/dm/f90-mod/ftn-auto-interfaces/petscfv.h90,1028
petscfv.h90:^?petscfv.h90^A,1
@@ -56977,6 +56977,34 @@
MANSEC 8,153
SUBMANSEC 9,168
+src/dm/dt/interface/dtprob.c,1220
+dtprob.c:^?dtprob.c^A,1
+const char *const DTProbDensityTypes[DTProbDensityTypes7,125
+PetscErrorCode PetscPDFMaxwellBoltzmann1D(24,527
+PetscErrorCode PetscCDFMaxwellBoltzmann1D(45,994
+PetscErrorCode PetscPDFMaxwellBoltzmann2D(66,1427
+PetscErrorCode PetscCDFMaxwellBoltzmann2D(87,1870
+PetscErrorCode PetscPDFMaxwellBoltzmann3D(108,2311
+PetscErrorCode PetscCDFMaxwellBoltzmann3D(129,2795
+PetscErrorCode PetscPDFGaussian1D(150,3298
+PetscErrorCode PetscCDFGaussian1D(157,3576
+PetscErrorCode PetscPDFSampleGaussian1D(181,4254
+PetscErrorCode PetscPDFGaussian2D(224,5456
+PetscErrorCode PetscPDFSampleGaussian2D(248,6048
+PetscErrorCode PetscPDFGaussian3D(272,6681
+PetscErrorCode PetscPDFSampleGaussian3D(297,7323
+PetscErrorCode PetscPDFConstant1D(319,7876
+PetscErrorCode PetscCDFConstant1D(340,8360
+PetscErrorCode PetscPDFSampleConstant1D(361,8896
+PetscErrorCode PetscPDFConstant2D(382,9372
+PetscErrorCode PetscCDFConstant2D(403,9895
+PetscErrorCode PetscPDFSampleConstant2D(424,10508
+PetscErrorCode PetscPDFConstant3D(446,11031
+PetscErrorCode PetscCDFConstant3D(467,11593
+PetscErrorCode PetscPDFSampleConstant3D(488,12272
+PetscErrorCode PetscProbCreateFromOptions(515,13014
+PetscErrorCode PetscProbComputeKSStatistic(637,16977
+
src/dm/dt/interface/dtds.c,5323
dtds.c:^?dtds.c^A,1
PetscClassId PETSCDS_CLASSID 3,60
@@ -57157,34 +57185,6 @@
PetscErrorCode PetscWeakFormView(1051,79059
PetscErrorCode PetscWeakFormCreate(1080,79878
-src/dm/dt/interface/dtprob.c,1220
-dtprob.c:^?dtprob.c^A,1
-const char *const DTProbDensityTypes[DTProbDensityTypes7,125
-PetscErrorCode PetscPDFMaxwellBoltzmann1D(24,527
-PetscErrorCode PetscCDFMaxwellBoltzmann1D(45,994
-PetscErrorCode PetscPDFMaxwellBoltzmann2D(66,1427
-PetscErrorCode PetscCDFMaxwellBoltzmann2D(87,1870
-PetscErrorCode PetscPDFMaxwellBoltzmann3D(108,2311
-PetscErrorCode PetscCDFMaxwellBoltzmann3D(129,2795
-PetscErrorCode PetscPDFGaussian1D(150,3298
-PetscErrorCode PetscCDFGaussian1D(157,3576
-PetscErrorCode PetscPDFSampleGaussian1D(181,4254
-PetscErrorCode PetscPDFGaussian2D(224,5456
-PetscErrorCode PetscPDFSampleGaussian2D(248,6048
-PetscErrorCode PetscPDFGaussian3D(272,6681
-PetscErrorCode PetscPDFSampleGaussian3D(297,7323
-PetscErrorCode PetscPDFConstant1D(319,7876
-PetscErrorCode PetscCDFConstant1D(340,8360
-PetscErrorCode PetscPDFSampleConstant1D(361,8896
-PetscErrorCode PetscPDFConstant2D(382,9372
-PetscErrorCode PetscCDFConstant2D(403,9895
-PetscErrorCode PetscPDFSampleConstant2D(424,10508
-PetscErrorCode PetscPDFConstant3D(446,11031
-PetscErrorCode PetscCDFConstant3D(467,11593
-PetscErrorCode PetscPDFSampleConstant3D(488,12272
-PetscErrorCode PetscProbCreateFromOptions(515,13014
-PetscErrorCode PetscProbComputeKSStatistic(637,16977
-
src/dm/dt/interface/dtaltv.c,423
dtaltv.c:^?dtaltv.c^A,1
PetscErrorCode PetscDTAltVApply(75,5500
@@ -57531,28 +57531,28 @@
PetscErrorCode PetscFVGetCellTabulation(1578,43570
PetscErrorCode PetscFVCreateTabulation(1618,45018
PetscErrorCode PetscFVComputeGradient(1676,47022
-PetscErrorCode PetscFVIntegrateRHSFunction(1707,48151
-PetscErrorCode PetscFVRefine(1730,49139
-static PetscErrorCode PetscFVDestroy_Upwind(1788,51497
-static PetscErrorCode PetscFVView_Upwind_Ascii(1797,51686
-static PetscErrorCode PetscFVView_Upwind(1813,52309
-static PetscErrorCode PetscFVSetUp_Upwind(1825,52717
-static PetscErrorCode PetscFVIntegrateRHSFunction_Upwind(1835,52921
-static PetscErrorCode PetscFVInitialize_Upwind(1862,54338
-PETSC_EXTERN PetscErrorCode PetscFVCreate_Upwind(1881,54896
-static PetscErrorCode PetscFVDestroy_LeastSquares(1896,55205
-static PetscErrorCode PetscFVView_LeastSquares_Ascii(1907,55576
-static PetscErrorCode PetscFVView_LeastSquares(1923,56232
-static PetscErrorCode PetscFVSetUp_LeastSquares(1935,56652
-static PetscErrorCode PetscFVLeastSquaresPseudoInverse_Static(1942,56831
-static PetscErrorCode PetscFVLeastSquaresPseudoInverseSVD_Static(1990,58773
-static PetscErrorCode PetscFVLeastSquaresDebugCell_Static(2039,60685
-static PetscErrorCode PetscFVComputeGradient_LeastSquares(2082,62129
-static PetscErrorCode PetscFVIntegrateRHSFunction_LeastSquares(2120,63872
-static PetscErrorCode PetscFVLeastSquaresSetMaxFaces_LS(2147,65295
-PetscErrorCode PetscFVInitialize_LeastSquares(2167,66107
-PETSC_EXTERN PetscErrorCode PetscFVCreate_LeastSquares(2187,66772
-PetscErrorCode PetscFVLeastSquaresSetMaxFaces(2222,67736
+PetscErrorCode PetscFVIntegrateRHSFunction(1707,48152
+PetscErrorCode PetscFVRefine(1730,49140
+static PetscErrorCode PetscFVDestroy_Upwind(1788,51498
+static PetscErrorCode PetscFVView_Upwind_Ascii(1797,51687
+static PetscErrorCode PetscFVView_Upwind(1813,52310
+static PetscErrorCode PetscFVSetUp_Upwind(1825,52718
+static PetscErrorCode PetscFVIntegrateRHSFunction_Upwind(1835,52922
+static PetscErrorCode PetscFVInitialize_Upwind(1862,54339
+PETSC_EXTERN PetscErrorCode PetscFVCreate_Upwind(1881,54897
+static PetscErrorCode PetscFVDestroy_LeastSquares(1896,55206
+static PetscErrorCode PetscFVView_LeastSquares_Ascii(1907,55577
+static PetscErrorCode PetscFVView_LeastSquares(1923,56233
+static PetscErrorCode PetscFVSetUp_LeastSquares(1935,56653
+static PetscErrorCode PetscFVLeastSquaresPseudoInverse_Static(1942,56832
+static PetscErrorCode PetscFVLeastSquaresPseudoInverseSVD_Static(1990,58774
+static PetscErrorCode PetscFVLeastSquaresDebugCell_Static(2039,60686
+static PetscErrorCode PetscFVComputeGradient_LeastSquares(2082,62130
+static PetscErrorCode PetscFVIntegrateRHSFunction_LeastSquares(2120,63873
+static PetscErrorCode PetscFVLeastSquaresSetMaxFaces_LS(2147,65296
+PetscErrorCode PetscFVInitialize_LeastSquares(2167,66108
+PETSC_EXTERN PetscErrorCode PetscFVCreate_LeastSquares(2187,66773
+PetscErrorCode PetscFVLeastSquaresSetMaxFaces(2222,67737
src/dm/dt/fv/interface/makefile,113
makefile:^?makefile^A,1
@@ -57936,10 +57936,10 @@
PetscErrorCode PetscDualSpaceTransform(1815,62987
PetscErrorCode PetscDualSpaceTransformGradient(1871,65112
PetscErrorCode PetscDualSpaceTransformHessian(2006,70417
-PetscErrorCode PetscDualSpacePullback(2077,73649
-PetscErrorCode PetscDualSpacePushforward(2129,75834
-PetscErrorCode PetscDualSpacePushforwardGradient(2181,78099
-PetscErrorCode PetscDualSpacePushforwardHessian(2233,80376
+PetscErrorCode PetscDualSpacePullback(2077,73650
+PetscErrorCode PetscDualSpacePushforward(2129,75835
+PetscErrorCode PetscDualSpacePushforwardGradient(2181,78100
+PetscErrorCode PetscDualSpacePushforwardHessian(2233,80377
src/dm/dt/dualspace/interface/makefile,113
makefile:^?makefile^A,1
@@ -63724,14 +63724,14 @@
src/binding/petsc4py/docs/usrman/search.html,170
search.html:^?search.html^A,1
-Search — PETSc for Python 3.18.4 documentation8,150
+Search — PETSc for Python 3.18.5 documentation8,150
Navigationdocumentation_options29,1125
Searchsearch-documentation44,1677
Navigationsearch-results86,2705
src/binding/petsc4py/docs/usrman/genindex.html,170
genindex.html:^?genindex.html^A,1
-Index — PETSc for Python 3.18.4 documentation8,150
+Index — PETSc for Python 3.18.5 documentation8,150
Navigationdocumentation_options23,962
Indexindex39,1502
Quick searchsearchlabel53,1837
@@ -63739,7 +63739,7 @@
src/binding/petsc4py/docs/usrman/tutorial.html,198
tutorial.html:^?tutorial.html^A,1
-Tutorial — PETSc for Python 3.18.4 documentation9,236
+Tutorial — PETSc for Python 3.18.5 documentation9,236
Navigationdocumentation_options26,1189
Tutorialtutorial48,2019
This Page70,2752
@@ -63748,7 +63748,7 @@
src/binding/petsc4py/docs/usrman/overview.html,364
overview.html:^?overview.html^A,1
-Overview — PETSc for Python 3.18.4 documentation9,236
+Overview — PETSc for Python 3.18.5 documentation9,236
Navigationdocumentation_options26,1195
Overviewoverview48,2031
[petsc-efficient]id154,2560
@@ -63763,7 +63763,7 @@
src/binding/petsc4py/docs/usrman/manual.html,224
manual.html:^?manual.html^A,1
-PETSc for Python — PETSc for Python 3.18.4 documentation9,236
+PETSc for Python — PETSc for Python 3.18.5 documentation9,236
Navigationdocumentation_options24,1071
PETSc for Pythonpetsc-for-python40,1667
This Page93,4655
@@ -63772,7 +63772,7 @@
src/binding/petsc4py/docs/usrman/install.html,348
install.html:^?install.html^A,1
-Installation — PETSc for Python 3.18.4 documentation9,236
+Installation — PETSc for Python 3.18.5 documentation9,236
Navigationdocumentation_options26,1191
Installationinstallation48,2027
Using petsc4py-install50,2157
@@ -63785,7 +63785,7 @@
src/binding/petsc4py/docs/usrman/citing.html,201
citing.html:^?citing.html^A,1
-Citations — PETSc for Python 3.18.4 documentation9,236
+Citations — PETSc for Python 3.18.5 documentation9,236
Navigationdocumentation_options25,1126
Citationscitations44,1834
This Page78,3469
@@ -64786,6 +64786,60 @@
#define PETSC_VERSION_GT(40,1304
#define PETSC_VERSION_GE(43,1402
+include/petscdmstag.h,1665
+petscdmstag.h:^?petscdmstag.h^A,1
+#define PETSC_DMSTAG_H2,23
+ DMSTAG_NULL_LOCATION 23,643
+ DMSTAG_BACK_DOWN_LEFT,24,671
+ DMSTAG_BACK_DOWN,25,696
+ DMSTAG_BACK_DOWN_RIGHT,26,716
+ DMSTAG_BACK_LEFT,27,742
+ DMSTAG_BACK,28,762
+ DMSTAG_BACK_RIGHT,29,777
+ DMSTAG_BACK_UP_LEFT,30,798
+ DMSTAG_BACK_UP,31,821
+ DMSTAG_BACK_UP_RIGHT,32,839
+ DMSTAG_DOWN_LEFT,33,863
+ DMSTAG_DOWN,34,883
+ DMSTAG_DOWN_RIGHT,35,898
+ DMSTAG_LEFT,36,919
+ DMSTAG_ELEMENT,37,934
+ DMSTAG_RIGHT,38,952
+ DMSTAG_UP_LEFT,39,968
+ DMSTAG_UP,40,986
+ DMSTAG_UP_RIGHT,41,999
+ DMSTAG_FRONT_DOWN_LEFT,42,1018
+ DMSTAG_FRONT_DOWN,43,1044
+ DMSTAG_FRONT_DOWN_RIGHT,44,1065
+ DMSTAG_FRONT_LEFT,45,1092
+ DMSTAG_FRONT,46,1113
+ DMSTAG_FRONT_RIGHT,47,1129
+ DMSTAG_FRONT_UP_LEFT,48,1151
+ DMSTAG_FRONT_UP,49,1175
+ DMSTAG_FRONT_UP_RIGHT50,1194
+} DMStagStencilLocation;51,1218
+PETSC_EXTERN const char *const DMStagStencilLocations[DMStagStencilLocations52,1243
+ DMStagStencilLocation loc;70,2246
+ PetscInt i,71,2275
+ PetscInt i, j,71,2275
+ PetscInt i, j, k,71,2275
+ PetscInt i, j, k, c;71,2275
+} DMStagStencil;72,2311
+ DMSTAG_STENCIL_NONE 83,2636
+ DMSTAG_STENCIL_STAR,84,2663
+ DMSTAG_STENCIL_BOX85,2686
+} DMStagStencilType;86,2707
+PETSC_EXTERN const char *const DMStagStencilTypes[DMStagStencilTypes87,2728
+PETSC_DEPRECATED_FUNCTION(142,8131
+PETSC_DEPRECATED_FUNCTION(146,8391
+PETSC_DEPRECATED_FUNCTION(150,8660
+PETSC_DEPRECATED_FUNCTION(154,8856
+PETSC_DEPRECATED_FUNCTION(158,9128
+PETSC_DEPRECATED_FUNCTION(162,9324
+PETSC_DEPRECATED_FUNCTION(166,9512
+PETSC_DEPRECATED_FUNCTION(170,9712
+PETSC_DEPRECATED_FUNCTION(174,9912
+
include/petscsystypes.h,5594
petscsystypes.h:^?petscsystypes.h^A,1
#define PETSCSYSTYPES_H6,136
@@ -68826,60 +68880,6 @@
#define PetscDrawCollectiveBegin(431,20051
#define PetscDrawCollectiveEnd(432,20092
-include/petscdmstag.h,1663
-petscdmstag.h:^?petscdmstag.h^A,1
-#define PETSC_DMSTAG_H2,23
- DMSTAG_NULL_LOCATION 22,583
- DMSTAG_BACK_DOWN_LEFT,23,611
- DMSTAG_BACK_DOWN,24,636
- DMSTAG_BACK_DOWN_RIGHT,25,656
- DMSTAG_BACK_LEFT,26,682
- DMSTAG_BACK,27,702
- DMSTAG_BACK_RIGHT,28,717
- DMSTAG_BACK_UP_LEFT,29,738
- DMSTAG_BACK_UP,30,761
- DMSTAG_BACK_UP_RIGHT,31,779
- DMSTAG_DOWN_LEFT,32,803
- DMSTAG_DOWN,33,823
- DMSTAG_DOWN_RIGHT,34,838
- DMSTAG_LEFT,35,859
- DMSTAG_ELEMENT,36,874
- DMSTAG_RIGHT,37,892
- DMSTAG_UP_LEFT,38,908
- DMSTAG_UP,39,926
- DMSTAG_UP_RIGHT,40,939
- DMSTAG_FRONT_DOWN_LEFT,41,958
- DMSTAG_FRONT_DOWN,42,984
- DMSTAG_FRONT_DOWN_RIGHT,43,1005
- DMSTAG_FRONT_LEFT,44,1032
- DMSTAG_FRONT,45,1053
- DMSTAG_FRONT_RIGHT,46,1069
- DMSTAG_FRONT_UP_LEFT,47,1091
- DMSTAG_FRONT_UP,48,1115
- DMSTAG_FRONT_UP_RIGHT49,1134
-} DMStagStencilLocation;50,1158
-PETSC_EXTERN const char *const DMStagStencilLocations[DMStagStencilLocations51,1183
- DMStagStencilLocation loc;68,2133
- PetscInt i,69,2162
- PetscInt i, j,69,2162
- PetscInt i, j, k,69,2162
- PetscInt i, j, k, c;69,2162
-} DMStagStencil;70,2198
- DMSTAG_STENCIL_NONE 81,2480
- DMSTAG_STENCIL_STAR,82,2507
- DMSTAG_STENCIL_BOX83,2530
-} DMStagStencilType;84,2551
-PETSC_EXTERN const char *const DMStagStencilTypes[DMStagStencilTypes85,2572
-PETSC_DEPRECATED_FUNCTION(140,7975
-PETSC_DEPRECATED_FUNCTION(144,8235
-PETSC_DEPRECATED_FUNCTION(148,8504
-PETSC_DEPRECATED_FUNCTION(152,8700
-PETSC_DEPRECATED_FUNCTION(156,8972
-PETSC_DEPRECATED_FUNCTION(160,9168
-PETSC_DEPRECATED_FUNCTION(164,9356
-PETSC_DEPRECATED_FUNCTION(168,9556
-PETSC_DEPRECATED_FUNCTION(172,9756
-
include/petscdmsliced.h,29
petscdmsliced.h:^?petscdmsliced.h^A,1
#define PETSCDMSLICED_H3,59
@@ -69418,6 +69418,832 @@
typedef struct _PetscHashIV PetscHMapIV;1381,30291
typedef struct _PetscHashObj PetscHMapObj;1792,39512
+include/petsc/private/petscimpl.h,11701
+petscimpl.h:^?petscimpl.h^A,1
+#define PETSCIMPL_H6,78
+ #define PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(12,185
+ #define PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(14,290
+ #define PetscStackSetCheck(24,737
+ #define PetscStackView(25,783
+ #define PetscStackReset(26,829
+ #define PetscStackCopy(27,875
+ #define PetscStackPrint(28,921
+ PetscErrorCode (*view)view63,2565
+ PetscErrorCode (*destroy)destroy64,2617
+ PetscErrorCode (*compose)compose65,2661
+ PetscErrorCode (*query)query66,2730
+ PetscErrorCode (*composefunction)composefunction67,2799
+ PetscErrorCode (*queryfunction)queryfunction68,2879
+} PetscOps;69,2958
+ PETSC_FORTRAN_CALLBACK_CLASS,72,2986
+ PETSC_FORTRAN_CALLBACK_SUBTYPE,73,3018
+ PETSC_FORTRAN_CALLBACK_MAXTYPE74,3052
+} PetscFortranCallbackType;75,3085
+typedef size_t PetscFortranCallbackId;76,3113
+#define PETSC_SMALLEST_FORTRAN_CALLBACK 77,3152
+ void (*func)func82,3477
+ void *ctx;ctx83,3499
+} PetscFortranCallback;84,3512
+#define PETSC_MAX_OPTIONS_HANDLER 92,3784
+typedef struct _p_PetscObject 93,3820
+ PetscOps bops[bops94,3852
+ PetscClassId classid;95,3877
+ MPI_Comm comm;96,3902
+ PetscObjectId id;97,3924
+ PetscInt refct;98,4071
+ PetscErrorCode (*non_cyclic_references)non_cyclic_references99,4094
+ PetscInt64 cidx;100,4162
+ PetscMPIInt tag;101,4188
+ PetscFunctionList qlist;102,4213
+ PetscObjectList olist;103,4240
+ char *class_name;class_name104,4267
+ char *description;description105,4325
+ char *mansec;mansec106,4358
+ char *type_name;type_name107,4386
+ char *name;name108,4484
+ char *prefix;prefix109,4510
+ PetscInt tablevel;110,4538
+ void *cpp;cpp111,4568
+ PetscObjectState state;112,4593
+ PetscInt int_idmax,113,4620
+ PetscInt int_idmax, intstar_idmax;113,4620
+ PetscObjectState *intcomposedstate,intcomposedstate114,4666
+ PetscObjectState *intcomposedstate, *intstarcomposedstate;intstarcomposedstate114,4666
+ PetscInt *intcomposeddata,intcomposeddata115,4727
+ PetscInt *intcomposeddata, **intstarcomposeddata;intstarcomposeddata115,4727
+ PetscInt real_idmax,116,4787
+ PetscInt real_idmax, realstar_idmax;116,4787
+ PetscObjectState *realcomposedstate,realcomposedstate117,4835
+ PetscObjectState *realcomposedstate, *realstarcomposedstate;realstarcomposedstate117,4835
+ PetscReal *realcomposeddata,realcomposeddata118,4898
+ PetscReal *realcomposeddata, **realstarcomposeddata;realstarcomposeddata118,4898
+ PetscInt scalar_idmax,119,4960
+ PetscInt scalar_idmax, scalarstar_idmax;119,4960
+ PetscObjectState *scalarcomposedstate,scalarcomposedstate120,5012
+ PetscObjectState *scalarcomposedstate, *scalarstarcomposedstate;scalarstarcomposedstate120,5012
+ PetscScalar *scalarcomposeddata,scalarcomposeddata121,5079
+ PetscScalar *scalarcomposeddata, **scalarstarcomposeddata;scalarstarcomposeddata121,5079
+ void (**fortran_func_pointers)fortran_func_pointers122,5145
+ PetscFortranCallbackId num_fortran_func_pointers;123,5280
+ PetscFortranCallback *fortrancallback[fortrancallback124,5384
+ PetscFortranCallbackId num_fortrancallback[num_fortrancallback125,5458
+ void *python_context;python_context126,5536
+ PetscErrorCode (*python_destroy)python_destroy127,5577
+ PetscInt noptionhandler;129,5622
+ PetscErrorCode (*optionhandler[optionhandler130,5649
+ PetscErrorCode (*optiondestroy[optiondestroy131,5752
+ void *optionctx[optionctx132,5835
+ PetscBool amsmem;134,5910
+ PetscBool amspublishblock;135,6023
+ PetscOptions options;137,6144
+ PetscBool optionsprinted;138,6216
+ PetscBool donotPetscObjectPrintClassNamePrefixType;139,6247
+} _p_PetscObject;140,6304
+#define PETSCHEADER(142,6323
+#define PETSCFREEDHEADER 146,6405
+PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscObjectDestroyFunction)PetscObjectDestroyFunction148,6434
+PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscObjectViewFunction)PetscObjectViewFunction149,6585
+#define PetscHeaderCreate(280,11300
+#define PetscHeaderDestroy(341,13197
+ #define PetscCheckPointer(359,14414
+ #define PetscValidHeaderSpecific(367,14653
+ #define PetscValidHeaderSpecificType(371,14756
+ #define PetscValidHeader(375,14866
+ #define PetscValidPointer(379,14957
+ #define PetscValidCharPointer(383,15049
+ #define PetscValidIntPointer(387,15145
+ #define PetscValidInt64Pointer(391,15240
+ #define PetscValidCountPointer(395,15337
+ #define PetscValidBoolPointer(399,15434
+ #define PetscValidScalarPointer(403,15530
+ #define PetscValidRealPointer(407,15628
+ #define PetscValidFunction(411,15724
+ #define PetscValidHeaderSpecificType(419,15963
+ #define PetscValidPointer_Internal(427,16390
+ #define PetscValidHeaderSpecific(433,16790
+ #define PetscValidHeader(442,17270
+ #define PetscValidPointer(449,17789
+ #define PetscValidCharPointer(450,17888
+ #define PetscValidIntPointer(451,17985
+ #define PetscValidInt64Pointer(452,18085
+ #define PetscValidCountPointer(453,18187
+ #define PetscValidBoolPointer(454,18291
+ #define PetscValidScalarPointer(455,18393
+ #define PetscValidRealPointer(456,18499
+ #define PetscValidFunction(458,18602
+#define PetscSorted(492,19710
+ #define PetscCheckSameType(506,20037
+ #define PetscCheckTypeName(511,20161
+ #define PetscCheckTypeNames(515,20255
+ #define PetscValidType(519,20358
+ #define PetscCheckSameComm(523,20447
+ #define PetscCheckSameTypeAndComm(528,20571
+ #define PetscValidLogicalCollectiveScalar(533,20702
+ #define PetscValidLogicalCollectiveReal(538,20834
+ #define PetscValidLogicalCollectiveInt(543,20964
+ #define PetscValidLogicalCollectiveMPIInt(548,21093
+ #define PetscValidLogicalCollectiveBool(553,21225
+ #define PetscValidLogicalCollectiveEnum(558,21355
+ #define PetscCheckSorted(563,21485
+ #define PetscCheckSameType(581,22041
+ #define PetscCheckSameType(588,22528
+ #define PetscCheckTypeName(598,22704
+ #define PetscCheckTypeNames(605,23034
+ #define PetscValidType(615,23460
+ #define PetscCheckSameComm(620,23742
+ #define PetscCheckSameTypeAndComm(627,24191
+ #define PetscValidLogicalCollectiveScalar(633,24377
+ #define PetscValidLogicalCollectiveReal(650,25139
+ #define PetscValidLogicalCollectiveInt(664,25721
+ #define PetscValidLogicalCollectiveMPIInt(673,26169
+ #define PetscValidLogicalCollectiveBool(682,26636
+ #define PetscValidLogicalCollectiveEnum(691,27107
+ #define PetscCheckSorted(700,27578
+template <typename Ta,709,27868
+template <typename Ta,711,27947
+template <typename Ta,713,28016
+template <typename Ta, typename Tb,713,28016
+template <typename Ta,717,28153
+template <typename Ta,719,28232
+template <typename Ta,721,28318
+template <typename Ta,723,28407
+template <typename Ta,725,28494
+template <typename Ta,727,28580
+template <typename Ta,729,28669
+template <typename Ta,731,28756
+#define PetscTryMethod(762,30005
+#define PetscUseMethod(794,31301
+ #define PetscUseTypeMethod(816,32243
+ #define PetscTryTypeMethod(825,32664
+ #define PetscUseTypeMethod(858,33801
+ #define PetscTryTypeMethod(886,35128
+#define PetscObjectStateIncrease(929,36828
+PETSC_EXTERN PetscInt PetscObjectComposedDataMax;940,37604
+#define PetscObjectComposedDataSetInt(968,38654
+#define PetscObjectComposedDataGetInt(998,39876
+#define PetscObjectComposedDataSetIntstar(1025,41046
+#define PetscObjectComposedDataGetIntstar(1056,42345
+#define PetscObjectComposedDataSetReal(1081,43428
+#define PetscObjectComposedDataGetReal(1109,44611
+#define PetscObjectComposedDataSetRealstar(1136,45868
+#define PetscObjectComposedDataGetRealstar(1167,47257
+ #define PetscObjectComposedDataSetScalar(1193,48497
+ #define PetscObjectComposedDataSetScalar(1195,48754
+ #define PetscObjectComposedDataGetScalar(1224,49972
+ #define PetscObjectComposedDataGetScalar(1226,50208
+ #define PetscObjectComposedDataSetScalarstar(1255,51451
+ #define PetscObjectComposedDataSetScalarstar(1258,51734
+ #define PetscObjectComposedDataGetScalarstar(1290,53068
+ #define PetscObjectComposedDataGetScalarstar(1292,53320
+PETSC_EXTERN PetscMPIInt Petsc_Counter_keyval;1295,53452
+PETSC_EXTERN PetscMPIInt Petsc_InnerComm_keyval;1296,53499
+PETSC_EXTERN PetscMPIInt Petsc_OuterComm_keyval;1297,53548
+PETSC_EXTERN PetscMPIInt Petsc_Seq_keyval;1298,53597
+PETSC_EXTERN PetscMPIInt Petsc_ShmComm_keyval;1299,53640
+PETSC_EXTERN PetscMPIInt Petsc_CreationIdx_keyval;1300,53687
+PETSC_EXTERN PetscMPIInt Petsc_Garbage_HMap_keyval;1301,53738
+struct PetscCommStash 1303,53791
+ struct PetscCommStash *next;next1304,53815
+ MPI_Comm comm;1305,53846
+ PetscMPIInt tag;1313,54038
+ PetscInt refcount;1314,54100
+ PetscInt namecount;1315,54210
+ PetscMPIInt *iflags;iflags1316,54308
+ struct PetscCommStash *comms;comms1317,54451
+} PetscCommCounter;1318,54557
+ STATE_BEGIN,1321,54593
+ STATE_PENDING,1322,54608
+ STATE_END1323,54625
+} SRState;1324,54637
+ PETSC_SR_REDUCE_SUM 1327,54664
+ PETSC_SR_REDUCE_MAX 1328,54691
+ PETSC_SR_REDUCE_MIN 1329,54718
+} PetscSRReductionType;1330,54744
+ MPI_Comm comm;1333,54786
+ MPI_Request request;1334,54807
+ PetscBool mix;1335,54831
+ PetscBool async;1336,54851
+ PetscScalar *lvalues;lvalues1337,54873
+ PetscScalar *gvalues;gvalues1338,54965
+ void **invecs;invecs1339,55035
+ PetscInt *reducetype;reducetype1340,55120
+ PetscScalar v;1342,55207
+ PetscInt i;1343,55226
+ } *lvalues_mix,lvalues_mix1344,55245
+ } *lvalues_mix, *gvalues_mix;gvalues_mix1344,55245
+ SRState state;1345,55324
+ PetscInt maxops;1346,55407
+ PetscInt numopsbegin;1347,55494
+ PetscInt numopsend;1348,55582
+} PetscSplitReduction;1349,55675
+typedef ck_spinlock_t PetscSpinlock;1366,56258
+static inline PetscErrorCode PetscSpinlockCreate(1367,56302
+static inline PetscErrorCode PetscSpinlockLock(1372,56428
+static inline PetscErrorCode PetscSpinlockUnlock(1377,56552
+static inline PetscErrorCode PetscSpinlockDestroy(1382,56680
+typedef omp_lock_t PetscSpinlock;1389,56835
+static inline PetscErrorCode PetscSpinlockCreate(1390,56879
+static inline PetscErrorCode PetscSpinlockLock(1395,56996
+static inline PetscErrorCode PetscSpinlockUnlock(1400,57110
+static inline PetscErrorCode PetscSpinlockDestroy(1405,57228
+typedef int PetscSpinlock;1415,57467
+ #define PetscSpinlockCreate(1416,57494
+ #define PetscSpinlockLock(1417,57532
+ #define PetscSpinlockUnlock(1418,57570
+ #define PetscSpinlockDestroy(1419,57608
+PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockOpen;1423,57695
+PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockStdout;1424,57752
+PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockStderr;1425,57811
+PETSC_INTERN PetscSpinlock PetscCommSpinLock;1426,57870
+PETSC_EXTERN PetscLogEvent PETSC_Barrier;1430,57933
+PETSC_EXTERN PetscLogEvent PETSC_BuildTwoSided;1431,57975
+PETSC_EXTERN PetscLogEvent PETSC_BuildTwoSidedF;1432,58023
+PETSC_EXTERN PetscBool use_gpu_aware_mpi;1433,58072
+PETSC_EXTERN PetscBool PetscPrintFunctionList;1434,58118
+PETSC_EXTERN int64_t Petsc_adios_group;1437,58200
+PETSC_INTERN PetscBool PetscBeganKokkos;1441,58279
+PETSC_EXTERN PetscBool PetscKokkosInitialized;1442,58325
+PETSC_EXTERN PetscInt PetscNumOMPThreads;1448,58554
+
+include/petsc/private/dmpleximpl.h,9985
+dmpleximpl.h:^?dmpleximpl.h^A,1
+#define _PLEXIMPL_H2,20
+PETSC_EXTERN PetscLogEvent DMPLEX_Interpolate;14,300
+PETSC_EXTERN PetscLogEvent DMPLEX_Partition;15,347
+PETSC_EXTERN PetscLogEvent DMPLEX_PartSelf;16,392
+PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelInvert;17,436
+PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelCreateSF;18,487
+PETSC_EXTERN PetscLogEvent DMPLEX_PartStratSF;19,540
+PETSC_EXTERN PetscLogEvent DMPLEX_CreatePointSF;20,587
+PETSC_EXTERN PetscLogEvent DMPLEX_Distribute;21,636
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeCones;22,682
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeLabels;23,733
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeSF;24,785
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeOverlap;25,833
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeField;26,886
+PETSC_EXTERN PetscLogEvent DMPLEX_DistributeData;27,937
+PETSC_EXTERN PetscLogEvent DMPLEX_Migrate;28,987
+PETSC_EXTERN PetscLogEvent DMPLEX_InterpolateSF;29,1030
+PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalBegin;30,1079
+PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalEnd;31,1135
+PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalBegin;32,1189
+PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalEnd;33,1245
+PETSC_EXTERN PetscLogEvent DMPLEX_Stratify;34,1299
+PETSC_EXTERN PetscLogEvent DMPLEX_Symmetrize;35,1343
+PETSC_EXTERN PetscLogEvent DMPLEX_Preallocate;36,1389
+PETSC_EXTERN PetscLogEvent DMPLEX_ResidualFEM;37,1436
+PETSC_EXTERN PetscLogEvent DMPLEX_JacobianFEM;38,1483
+PETSC_EXTERN PetscLogEvent DMPLEX_InterpolatorFEM;39,1530
+PETSC_EXTERN PetscLogEvent DMPLEX_InjectorFEM;40,1581
+PETSC_EXTERN PetscLogEvent DMPLEX_IntegralFEM;41,1628
+PETSC_EXTERN PetscLogEvent DMPLEX_CreateGmsh;42,1675
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalanceSharedPoints;43,1721
+PETSC_EXTERN PetscLogEvent DMPLEX_CreateFromFile;44,1778
+PETSC_EXTERN PetscLogEvent DMPLEX_BuildFromCellList;45,1828
+PETSC_EXTERN PetscLogEvent DMPLEX_BuildCoordinatesFromCellList;46,1881
+PETSC_EXTERN PetscLogEvent DMPLEX_LocatePoints;47,1945
+PETSC_EXTERN PetscLogEvent DMPLEX_TopologyView;48,1993
+PETSC_EXTERN PetscLogEvent DMPLEX_LabelsView;49,2041
+PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesView;50,2087
+PETSC_EXTERN PetscLogEvent DMPLEX_SectionView;51,2138
+PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorView;52,2185
+PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorView;53,2237
+PETSC_EXTERN PetscLogEvent DMPLEX_TopologyLoad;54,2288
+PETSC_EXTERN PetscLogEvent DMPLEX_LabelsLoad;55,2336
+PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesLoad;56,2382
+PETSC_EXTERN PetscLogEvent DMPLEX_SectionLoad;57,2433
+PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorLoad;58,2480
+PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorLoad;59,2532
+PETSC_EXTERN PetscLogEvent DMPLEX_MetricEnforceSPD;60,2583
+PETSC_EXTERN PetscLogEvent DMPLEX_MetricNormalize;61,2635
+PETSC_EXTERN PetscLogEvent DMPLEX_MetricAverage;62,2686
+PETSC_EXTERN PetscLogEvent DMPLEX_MetricIntersection;63,2735
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalBuildGraph;65,2790
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalRewriteSF;66,2841
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalGatherGraph;67,2891
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalPartition;68,2943
+PETSC_EXTERN PetscLogEvent DMPLEX_RebalScatterPart;69,2993
+ int index;73,3133
+ unsigned int zoneID;74,3177
+ unsigned int first;75,3200
+ unsigned int last;76,3222
+ int type;77,3243
+ int nd;78,3264
+ void *data;data79,3315
+} FluentSection;80,3336
+struct _PetscGridHash 82,3354
+ PetscInt dim;83,3378
+ PetscReal lower[lower84,3398
+ PetscReal upper[upper85,3454
+ PetscReal extent[extent86,3511
+ PetscReal h[h87,3558
+ PetscInt n[n88,3608
+ PetscSection cellSection;89,3665
+ IS cells;90,3731
+ DMLabel cellsSparse;91,3794
+ PetscBool isotropic;95,3877
+ PetscBool uniform;96,3945
+ PetscBool restrictAnisotropyFirst;97,4011
+ PetscBool noInsert;98,4101
+ PetscBool noSwap;99,4190
+ PetscBool noMove;100,4270
+ PetscBool noSurf;101,4349
+ PetscReal h_min,102,4435
+ PetscReal h_min, h_max;102,4435
+ PetscReal a_max;103,4522
+ PetscReal targetComplexity;104,4594
+ PetscReal p;105,4662
+ PetscReal gradationFactor;106,4742
+ PetscReal hausdorffNumber;107,4835
+ PetscInt numIter;108,4977
+ PetscInt verbosity;109,5064
+} DMPlexMetricCtx;110,5170
+ PetscInt refct;125,5638
+ PetscSection coneSection;127,5657
+ PetscInt *cones;cones128,5730
+ PetscInt *coneOrientations;coneOrientations129,5789
+ PetscSection supportSection;130,5958
+ PetscInt *supports;supports131,6031
+ PetscInt *facesTmp;facesTmp132,6090
+ PetscBool refinementUniform;135,6184
+ char *transformType;transformType136,6291
+ PetscReal refinementLimit;137,6411
+ PetscErrorCode (*refinementFunc)refinementFunc138,6517
+ DMPlexInterpolatedFlag interpolated;141,6666
+ DMPlexInterpolatedFlag interpolatedCollective;142,6705
+ DMPlexReorderDefaultFlag reorderDefault;144,6755
+ PetscBool distDefault;147,6852
+ PetscInt overlap;148,6917
+ PetscInt numOvLabels;149,7040
+ DMLabel ovLabels[ovLabels150,7131
+ PetscInt ovValues[ovValues151,7208
+ PetscInt numOvExLabels;152,7291
+ DMLabel ovExLabels[ovExLabels153,7367
+ PetscInt ovExValues[ovExValues154,7450
+ char *distributionName;distributionName155,7539
+ PetscBool regularRefinement;158,7647
+ char *tetgenOpts;tetgenOpts161,7769
+ char *triangleOpts;triangleOpts162,7800
+ PetscPartitioner partitioner;163,7833
+ PetscBool partitionBalance;164,7865
+ PetscBool remeshBd;165,7958
+ DMLabel subpointMap;168,8004
+ IS subpointIS;169,8142
+ PetscObjectState subpointState;170,8264
+ PetscObjectState depthState;173,8396
+ PetscObjectState celltypeState;174,8504
+ IS globalVertexNumbers;175,8615
+ IS globalCellNumbers;176,8655
+ PetscSection anchorSection;179,8714
+ IS anchorIS;180,8800
+ PetscErrorCode (*createanchors)createanchors181,8882
+ PetscErrorCode (*computeanchormatrix)computeanchormatrix182,8990
+ PetscSection parentSection;185,9160
+ PetscInt *parents;parents186,9225
+ PetscInt *childIDs;childIDs187,9277
+ PetscSection childSection;188,9331
+ PetscInt *children;children189,9393
+ DM referenceTree;190,9447
+ PetscErrorCode (*getchildsymmetry)getchildsymmetry191,9524
+ PetscSection subdomainSection;194,9663
+ PetscBool useAnchors;197,9715
+ PetscErrorCode (*useradjacency)useradjacency198,9867
+ void *useradjacencyctx;useradjacencyctx199,9982
+ PetscInt maxProjectionHeight;202,10115
+ PetscInt activePoint;203,10209
+ PetscInt vtkCellHeight;206,10297
+ PetscReal scale[scale207,10384
+ PetscBool ignoreModel;210,10471
+ PetscReal minradius;211,10571
+ PetscBool useHashLocation;212,10671
+ PetscGridHash lbox;213,10763
+ void (*coordFunc)coordFunc214,10843
+ PetscMPIInt *neighbors;neighbors218,11262
+ DMPlexMetricCtx *metricCtx;metricCtx221,11304
+ PetscBool printSetValues;224,11353
+ PetscInt printFEM;225,11381
+ PetscInt printL2;226,11403
+ PetscInt printLocate;227,11424
+ PetscReal printTol;228,11449
+} DM_Plex;229,11471
+struct _n_DMPlexStorageVersion 272,14447
+ int major,273,14480
+ int major, minor,273,14480
+ int major, minor, subminor;273,14480
+typedef struct _n_DMPlexStorageVersion *DMPlexStorageVersion;DMPlexStorageVersion275,14513
+static inline PetscInt DihedralInvert(352,22525
+static inline PetscInt DihedralCompose(357,22625
+static inline PetscInt DihedralSwap(363,22864
+static inline PetscInt DihedralInvert(375,23300
+static inline PetscInt DihedralCompose(395,23911
+static inline PetscInt DihedralSwap(415,24538
+static inline void DMPlex_Mult2D_Internal(444,26171
+static inline void DMPlex_Mult3D_Internal(451,26483
+static inline void DMPlex_MultTranspose2D_Internal(459,26904
+static inline void DMPlex_MultTranspose3D_Internal(466,27225
+static inline void DMPlex_Mult2DReal_Internal(474,27655
+static inline void DMPlex_Mult3DReal_Internal(481,27969
+static inline void DMPlex_MultAdd2DReal_Internal(489,28392
+static inline void DMPlex_MultAdd3DReal_Internal(496,28687
+static inline void DMPlex_MultTransposeReal_Internal(513,29234
+static inline void DMPlex_MultTranspose2DReal_Internal(525,29656
+static inline void DMPlex_MultTranspose3DReal_Internal(532,29979
+static inline void DMPlex_MatMult2D_Internal(541,30412
+#define PLEX_DIM__ 543,30548
+#undef PLEX_DIM__551,30839
+static inline void DMPlex_MatMult3D_Internal(553,30859
+#define PLEX_DIM__ 555,30995
+#undef PLEX_DIM__563,31286
+static inline void DMPlex_MatMultTranspose2D_Internal(565,31306
+#define PLEX_DIM__ 567,31451
+#undef PLEX_DIM__575,31751
+static inline void DMPlex_MatMultTranspose3D_Internal(577,31771
+#define PLEX_DIM__ 579,31916
+#undef PLEX_DIM__587,32216
+static inline void DMPlex_MatMultLeft2D_Internal(590,32237
+static inline void DMPlex_MatMultLeft3D_Internal(595,32511
+static inline void DMPlex_MatMultTransposeLeft2D_Internal(600,32785
+static inline void DMPlex_MatMultTransposeLeft3D_Internal(605,33059
+static inline void DMPlex_PTAP2DReal_Internal(611,33334
+static inline void DMPlex_PTAP3DReal_Internal(626,33796
+static inline void DMPlex_PTAPReal_Internal(642,34298
+static inline void DMPlex_Transpose2D_Internal(656,34710
+static inline void DMPlex_Transpose3D_Internal(663,34841
+static inline void DMPlex_Invert2D_Internal(677,35061
+static inline void DMPlex_Invert3D_Internal(688,35337
+static inline void DMPlex_Det2D_Internal(704,36314
+static inline void DMPlex_Det3D_Internal(710,36463
+static inline void DMPlex_Det2D_Scalar_Internal(716,36818
+static inline void DMPlex_Det3D_Scalar_Internal(722,37036
+static inline void DMPlex_WaxpyD_Internal(728,37625
+static inline PetscReal DMPlex_DotD_Internal(734,37819
+static inline PetscReal DMPlex_DotRealD_Internal(742,38040
+static inline PetscReal DMPlex_NormD_Internal(750,38248
+static inline PetscReal DMPlex_DistD_Internal(758,38448
+
+include/petsc/private/dmnetworkimpl.h,4039
+dmnetworkimpl.h:^?dmnetworkimpl.h^A,1
+#define _NETWORKIMPL_H2,23
+PETSC_EXTERN PetscLogEvent DMNetwork_LayoutSetUp;9,283
+PETSC_EXTERN PetscLogEvent DMNetwork_SetUpNetwork;10,333
+PETSC_EXTERN PetscLogEvent DMNetwork_Distribute;11,384
+#define DMNETWORK_MAX_COMP_REGISTERED_DEFAULT 13,434
+#define DMNETWORK_MAX_COMP_AT_POINT_DEFAULT 14,483
+typedef struct _p_DMNetworkComponentHeader *DMNetworkComponentHeader;DMNetworkComponentHeader16,532
+struct _p_DMNetworkComponentHeader 17,602
+ PetscInt index;18,639
+ PetscInt subnetid;19,710
+ PetscInt ndata;20,755
+ PetscInt hsize;21,803
+ PetscInt maxcomps;22,849
+ PetscInt *size;size29,1288
+ PetscInt *key;key30,1348
+ PetscInt *offset;offset31,1395
+ PetscInt *nvar;nvar32,1458
+ PetscInt *offsetvarrel;offsetvarrel33,1528
+typedef struct _p_DMNetworkComponentValue *DMNetworkComponentValue;DMNetworkComponentValue36,1689
+struct _p_DMNetworkComponentValue 37,1757
+ void **data;data38,1793
+ char name[name42,1899
+ PetscInt size;43,1939
+} DMNetworkComponent PETSC_ATTRIBUTEALIGNED(PetscMax(sizeof(double), sizeof(PetscScalar)44,1956
+ PetscSection DofSection;48,2118
+ PetscSection GlobalDofSection;49,2155
+ ISLocalToGlobalMapping mapping;50,2198
+ PetscSF sf;51,2232
+} DMNetworkVertexInfo;52,2261
+ PetscSection DofSection;55,2302
+ PetscSection GlobalDofSection;56,2339
+ ISLocalToGlobalMapping mapping;57,2382
+ PetscSF sf;58,2416
+} DMNetworkEdgeInfo;59,2445
+ PetscInt gidx;72,3000
+ PetscInt n;73,3070
+ PetscInt *sv;sv74,3155
+} SVtx;75,3240
+ SVNONE 77,3263
+ SVFROM 78,3278
+ SVTO 79,3292
+} SVtxType;80,3305
+ PetscInt Nvtx,83,3335
+ PetscInt Nvtx, nvtx;83,3335
+ PetscInt Nedge,84,3399
+ PetscInt Nedge, nedge;84,3399
+ PetscInt eStart,85,3460
+ PetscInt eStart, eEnd;85,3460
+ PetscInt vStart,86,3529
+ PetscInt vStart, vEnd;86,3529
+ PetscInt *edgelist;edgelist87,3600
+ PetscInt *vertices;vertices88,3773
+ PetscInt *edges;edges89,3896
+ char name[name90,4014
+} DMSubnetwork;91,4055
+typedef struct _p_DMNetworkCloneShared *DMNetworkCloneShared;DMNetworkCloneShared100,4475
+struct _p_DMNetworkCloneShared 101,4537
+ PetscInt refct;102,4570
+ PetscInt NEdges,103,4646
+ PetscInt NEdges, nEdges;103,4646
+ PetscInt NVertices,104,4715
+ PetscInt NVertices, nVertices;104,4715
+ PetscInt pStart,105,4787
+ PetscInt pStart, pEnd;105,4787
+ PetscInt vStart,106,4872
+ PetscInt vStart, vEnd;106,4872
+ PetscInt eStart,107,4947
+ PetscInt eStart, eEnd;107,4947
+ PetscBool distributecalled;108,5019
+ PetscInt *vltog;vltog109,5099
+ PetscInt nsubnet,111,5210
+ PetscInt nsubnet, Nsubnet;111,5210
+ DMSubnetwork *subnet;subnet112,5295
+ PetscInt *subnetvtx,subnetvtx113,5353
+ PetscInt *subnetvtx, *subnetedge;subnetedge113,5353
+ SVtx *svtx;svtx114,5456
+ PetscInt nsvtx,115,5542
+ PetscInt nsvtx, Nsvtx;115,5542
+ PetscInt *svertices;svertices116,5628
+ PetscInt *sedgelist;sedgelist117,5732
+ PetscTable svtable;118,5807
+ DMNetworkCloneShared cloneshared;122,5986
+ DM plex;123,6022
+ PetscSection DataSection;125,6241
+ PetscSection DofSection;126,6332
+ PetscSection GlobalDofSection;127,6418
+ DMNetworkVertexInfo vertex;129,6485
+ DMNetworkEdgeInfo edge;130,6515
+ PetscInt ncomponent;132,6544
+ DMNetworkComponent *component;component133,6646
+ DMNetworkComponentHeader header;134,6746
+ DMNetworkComponentValue cvalue;135,6791
+ DMNetworkComponentGenericDataType *componentdataarray;componentdataarray136,6836
+ PetscBool componentsetup;137,6924
+ PetscInt max_comps_registered;138,7064
+ PetscBool userEdgeJacobian,140,7179
+ PetscBool userEdgeJacobian, userVertexJacobian;140,7179
+ Mat *Je;Je141,7278
+ Mat *Jv;Jv142,7410
+ PetscInt *Jvptr;Jvptr143,7553
+} DM_Network;148,7991
+
+include/petsc/private/dmimpl.h,11889
+dmimpl.h:^?dmimpl.h^A,1
+#define _DMIMPL_H3,19
+PETSC_EXTERN PetscBool DMRegisterAllCalled;13,271
+typedef PetscErrorCode (*NullSpaceFunc)NullSpaceFunc15,369
+typedef struct _PetscHashAuxKey 17,479
+ DMLabel label;18,513
+ PetscInt value;19,531
+ PetscInt part;20,549
+} PetscHashAuxKey;21,566
+#define PetscHashAuxKeyHash(23,586
+#define PetscHashAuxKeyEqual(25,739
+PETSC_HASH_MAP(27,872
+struct _n_DMGeneratorFunctionList 29,968
+ PetscErrorCode (*generate)generate30,1004
+ PetscErrorCode (*refine)refine31,1055
+ PetscErrorCode (*adapt)adapt32,1106
+ char *name;name33,1166
+ PetscInt dim;34,1198
+ DMGeneratorFunctionList next;35,1229
+typedef struct _DMOps *DMOps;DMOps38,1265
+struct _DMOps 39,1295
+ PetscErrorCode (*view)view40,1311
+ PetscErrorCode (*load)load41,1354
+ PetscErrorCode (*clone)clone42,1397
+ PetscErrorCode (*setfromoptions)setfromoptions43,1434
+ PetscErrorCode (*setup)setup44,1494
+ PetscErrorCode (*createlocalsection)createlocalsection45,1525
+ PetscErrorCode (*createdefaultconstraints)createdefaultconstraints46,1569
+ PetscErrorCode (*createglobalvector)createglobalvector47,1619
+ PetscErrorCode (*createlocalvector)createlocalvector48,1670
+ PetscErrorCode (*getlocaltoglobalmapping)getlocaltoglobalmapping49,1720
+ PetscErrorCode (*createfieldis)createfieldis50,1769
+ PetscErrorCode (*createcoordinatedm)createcoordinatedm51,1837
+ PetscErrorCode (*createcoordinatefield)createcoordinatefield52,1887
+ PetscErrorCode (*getcoloring)getcoloring54,1946
+ PetscErrorCode (*creatematrix)creatematrix55,2013
+ PetscErrorCode (*createinterpolation)createinterpolation56,2058
+ PetscErrorCode (*createrestriction)createrestriction57,2121
+ PetscErrorCode (*createmassmatrix)createmassmatrix58,2175
+ PetscErrorCode (*createmassmatrixlumped)createmassmatrixlumped59,2228
+ PetscErrorCode (*hascreateinjection)hascreateinjection60,2283
+ PetscErrorCode (*createinjection)createinjection61,2340
+ PetscErrorCode (*refine)refine63,2393
+ PetscErrorCode (*coarsen)coarsen64,2441
+ PetscErrorCode (*refinehierarchy)refinehierarchy65,2490
+ PetscErrorCode (*coarsenhierarchy)coarsenhierarchy66,2547
+ PetscErrorCode (*extrude)extrude67,2605
+ PetscErrorCode (*globaltolocalbegin)globaltolocalbegin69,2655
+ PetscErrorCode (*globaltolocalend)globaltolocalend70,2721
+ PetscErrorCode (*localtoglobalbegin)localtoglobalbegin71,2785
+ PetscErrorCode (*localtoglobalend)localtoglobalend72,2851
+ PetscErrorCode (*localtolocalbegin)localtolocalbegin73,2915
+ PetscErrorCode (*localtolocalend)localtolocalend74,2980
+ PetscErrorCode (*destroy)destroy76,3044
+ PetscErrorCode (*computevariablebounds)computevariablebounds78,3078
+ PetscErrorCode (*createsubdm)createsubdm80,3136
+ PetscErrorCode (*createsuperdm)createsuperdm81,3213
+ PetscErrorCode (*createfielddecomposition)createfielddecomposition82,3277
+ PetscErrorCode (*createdomaindecomposition)createdomaindecomposition83,3363
+ PetscErrorCode (*createddscatters)createddscatters84,3457
+ PetscErrorCode (*getdimpoints)getdimpoints86,3561
+ PetscErrorCode (*locatepoints)locatepoints87,3633
+ PetscErrorCode (*getneighbors)getneighbors88,3706
+ PetscErrorCode (*getboundingbox)getboundingbox89,3778
+ PetscErrorCode (*getlocalboundingbox)getlocalboundingbox90,3844
+ PetscErrorCode (*locatepointssubdomain)locatepointssubdomain91,3915
+ PetscErrorCode (*projectfunctionlocal)projectfunctionlocal93,3984
+ PetscErrorCode (*projectfunctionlabellocal)projectfunctionlabellocal94,4161
+ PetscErrorCode (*projectfieldlocal)projectfieldlocal95,4408
+ PetscErrorCode (*projectfieldlabellocal)projectfieldlabellocal96,4799
+ PetscErrorCode (*projectbdfieldlabellocal)projectbdfieldlabellocal97,5260
+ PetscErrorCode (*computel2diff)computel2diff98,5742
+ PetscErrorCode (*computel2gradientdiff)computel2gradientdiff99,5913
+ PetscErrorCode (*computel2fielddiff)computel2fielddiff100,6130
+ PetscErrorCode (*getcompatibility)getcompatibility102,6307
+typedef struct _DMCoarsenHookLink *DMCoarsenHookLink;DMCoarsenHookLink111,6857
+struct _DMCoarsenHookLink 112,6911
+ PetscErrorCode (*coarsenhook)coarsenhook113,6939
+ PetscErrorCode (*restricthook)restricthook114,7046
+ void *ctx;ctx115,7176
+ DMCoarsenHookLink next;116,7201
+typedef struct _DMRefineHookLink *DMRefineHookLink;DMRefineHookLink119,7231
+struct _DMRefineHookLink 120,7283
+ PetscErrorCode (*refinehook)refinehook121,7310
+ PetscErrorCode (*interphook)interphook122,7405
+ void *ctx;ctx123,7523
+ DMRefineHookLink next;124,7547
+typedef struct _DMSubDomainHookLink *DMSubDomainHookLink;DMSubDomainHookLink127,7576
+struct _DMSubDomainHookLink 128,7634
+ PetscErrorCode (*ddhook)ddhook129,7664
+ PetscErrorCode (*restricthook)restricthook130,7708
+ void *ctx;ctx131,7782
+ DMSubDomainHookLink next;132,7809
+typedef struct _DMGlobalToLocalHookLink *DMGlobalToLocalHookLink;DMGlobalToLocalHookLink135,7841
+struct _DMGlobalToLocalHookLink 136,7907
+ PetscErrorCode (*beginhook)beginhook137,7941
+ PetscErrorCode (*endhook)endhook138,8006
+ void *ctx;ctx139,8069
+ DMGlobalToLocalHookLink next;140,8100
+typedef struct _DMLocalToGlobalHookLink *DMLocalToGlobalHookLink;DMLocalToGlobalHookLink143,8136
+struct _DMLocalToGlobalHookLink 144,8202
+ PetscErrorCode (*beginhook)beginhook145,8236
+ PetscErrorCode (*endhook)endhook146,8301
+ void *ctx;ctx147,8364
+ DMLocalToGlobalHookLink next;148,8395
+ DMVEC_STATUS_IN,152,8446
+ DMVEC_STATUS_OUT153,8465
+} DMVecStatus;154,8484
+typedef struct _DMNamedVecLink *DMNamedVecLink;DMNamedVecLink155,8499
+struct _DMNamedVecLink 156,8547
+ Vec X;157,8572
+ char *name;name158,8592
+ DMVecStatus status;159,8615
+ DMNamedVecLink next;160,8640
+typedef struct _DMWorkLink *DMWorkLink;DMWorkLink163,8667
+struct _DMWorkLink 164,8707
+ size_t bytes;165,8728
+ void *mem;mem166,8748
+ DMWorkLink next;167,8766
+#define DM_MAX_WORK_VECTORS 170,8789
+struct _n_DMLabelLink 172,8905
+ DMLabel label;173,8929
+ PetscBool output;174,8961
+ struct _n_DMLabelLink *next;next175,8994
+typedef struct _n_DMLabelLink *DMLabelLink;DMLabelLink177,9028
+typedef struct _n_Boundary *DMBoundary;DMBoundary179,9073
+struct _n_Boundary 181,9114
+ DSBoundary dsboundary;182,9135
+ DMLabel label;183,9160
+ DMBoundary next;184,9180
+typedef struct _n_Field 187,9203
+ PetscObject disc;188,9229
+ DMLabel label;189,9325
+ PetscBool adjacency[adjacency190,9412
+ PetscBool avoidTensor;191,9571
+} RegionField;192,9652
+typedef struct _n_Space 194,9668
+ PetscDS ds;195,9694
+ DMLabel label;196,9753
+ IS fields;197,9839
+} DMSpace;198,9925
+struct _p_UniversalLabel 200,9937
+ DMLabel label;201,9964
+ PetscInt Nl;202,10011
+ char **names;names203,10063
+ PetscInt *indices;indices204,10106
+ PetscInt Nv;205,10170
+ PetscInt *bits;bits206,10238
+ PetscInt *masks;masks207,10303
+ PetscInt *offsets;offsets208,10380
+ PetscInt *values;values209,10455
+#define MAXDMMONITORS 214,10593
+ PetscInt dim;217,10635
+ DM dm;218,10696
+ Vec x;219,10743
+ Vec xl;220,10802
+ DMField field;221,10861
+} DMCoordinates;222,10918
+struct _p_DM 224,10936
+ PETSCHEADER(225,10951
+ Vec localin[localin226,10981
+ Vec localin[DM_MAX_WORK_VECTORS], localout[localout226,10981
+ Vec globalin[globalin227,11059
+ Vec globalin[DM_MAX_WORK_VECTORS], globalout[globalout227,11059
+ DMNamedVecLink namedglobal;228,11139
+ DMNamedVecLink namedlocal;229,11169
+ DMWorkLink workin,230,11198
+ DMWorkLink workin, workout;230,11198
+ DMLabelLink labels;231,11232
+ DMLabel depthLabel;232,11292
+ DMLabel celltypeLabel;233,11362
+ void *ctx;ctx234,11435
+ PetscErrorCode (*ctxdestroy)ctxdestroy235,11488
+ ISColoringType coloringtype;236,11529
+ MatFDColoring fd;237,11568
+ VecType vectype;238,11597
+ MatType mattype;239,11717
+ PetscInt bind_below;240,11805
+ PetscInt bs;241,11932
+ ISLocalToGlobalMapping ltogmap;242,11961
+ PetscBool prealloc_skip;243,11995
+ PetscBool prealloc_only;244,12140
+ PetscBool structure_only;245,12273
+ PetscInt levelup,246,12400
+ PetscInt levelup, leveldown;246,12400
+ PetscBool setupcalled;247,12584
+ PetscBool setfromoptionscalled;248,12758
+ void *data;data249,12805
+ DM coarseMesh;251,12866
+ DM fineMesh;252,12904
+ DMCoarsenHookLink coarsenhook;253,12940
+ DMRefineHookLink refinehook;254,13042
+ DMSubDomainHookLink subdomainhook;255,13080
+ DMGlobalToLocalHookLink gtolhook;256,13121
+ DMLocalToGlobalHookLink ltoghook;257,13157
+ PetscInt dim;259,13210
+ PetscHMapAux auxData;261,13281
+ PetscSF sfMigration;263,13393
+ PetscSF sf;264,13478
+ PetscSF sectionSF;265,13539
+ PetscSF sfNatural;266,13612
+ PetscBool useNatural;267,13680
+ PetscBool adjacency[adjacency269,13775
+ PetscSection localSection;270,13871
+ PetscSection globalSection;271,13932
+ PetscLayout map;272,13994
+ PetscSection section;275,14045
+ Mat mat;276,14071
+ Vec bias;277,14093
+ } defaultConstraint;278,14116
+ DM transformDM;280,14168
+ Vec transform;281,14228
+ void *transformCtx;transformCtx282,14286
+ PetscErrorCode (*transformSetUp)transformSetUp283,14343
+ PetscErrorCode (*transformDestroy)transformDestroy284,14391
+ PetscErrorCode (*transformGetMatrix)transformGetMatrix285,14441
+ DMCoordinates coordinates[coordinates287,14565
+ PetscReal *Lstart,Lstart289,14700
+ PetscReal *Lstart, *L,L289,14700
+ PetscReal *Lstart, *L, *maxCell;maxCell289,14700
+ PetscBool sparseLocalize;290,14808
+ NullSpaceFunc nullspaceConstructors[nullspaceConstructors292,14993
+ NullSpaceFunc nearnullspaceConstructors[nearnullspaceConstructors293,15036
+ PetscInt Nf;295,15125
+ RegionField *fields;fields296,15201
+ DMBoundary boundary;297,15288
+ PetscInt Nds;298,15347
+ DMSpace *probs;probs299,15433
+ DM dmBC;301,15516
+ PetscInt outputSequenceNum;302,15602
+ PetscReal outputSequenceVal;303,15678
+ PetscErrorCode (*monitor[monitor304,15753
+ PetscErrorCode (*monitordestroy[monitordestroy305,15809
+ void *monitorcontext[monitorcontext306,15869
+ PetscInt numbermonitors;307,15911
+ PetscObject dmksp,309,15939
+ PetscObject dmksp, dmsnes,309,15939
+ PetscObject dmksp, dmsnes, dmts;309,15939
+ Ceed ceed;311,16000
+ CeedElemRestriction ceedERestrict;312,16059
+PETSC_EXTERN PetscLogEvent DM_Convert;316,16172
+PETSC_EXTERN PetscLogEvent DM_GlobalToLocal;317,16211
+PETSC_EXTERN PetscLogEvent DM_LocalToGlobal;318,16256
+PETSC_EXTERN PetscLogEvent DM_LocatePoints;319,16301
+PETSC_EXTERN PetscLogEvent DM_Coarsen;320,16345
+PETSC_EXTERN PetscLogEvent DM_Refine;321,16384
+PETSC_EXTERN PetscLogEvent DM_CreateInterpolation;322,16422
+PETSC_EXTERN PetscLogEvent DM_CreateRestriction;323,16473
+PETSC_EXTERN PetscLogEvent DM_CreateInjection;324,16522
+PETSC_EXTERN PetscLogEvent DM_CreateMatrix;325,16569
+PETSC_EXTERN PetscLogEvent DM_CreateMassMatrix;326,16613
+PETSC_EXTERN PetscLogEvent DM_Load;327,16661
+PETSC_EXTERN PetscLogEvent DM_AdaptInterpolator;328,16697
+static inline PetscErrorCode DMGetLocalOffset_Private(403,18928
+static inline PetscErrorCode DMGetLocalFieldOffset_Private(426,19715
+static inline PetscErrorCode DMGetGlobalOffset_Private(448,20557
+static inline PetscErrorCode DMGetGlobalFieldOffset_Private(474,21789
+
include/petsc/private/vecimpl.h,10034
vecimpl.h:^?vecimpl.h^A,1
#define __VECIMPL_H9,149
@@ -69778,253 +70604,6 @@
#define PetscSFMalloc(212,14277
#define PetscSFFree(213,14342
-include/petsc/private/petscimpl.h,11701
-petscimpl.h:^?petscimpl.h^A,1
-#define PETSCIMPL_H6,78
- #define PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(12,185
- #define PetscDisableStaticAnalyzerForExpressionUnderstandingThatThisIsDangerousAndBugprone(14,290
- #define PetscStackSetCheck(24,737
- #define PetscStackView(25,783
- #define PetscStackReset(26,829
- #define PetscStackCopy(27,875
- #define PetscStackPrint(28,921
- PetscErrorCode (*view)view63,2565
- PetscErrorCode (*destroy)destroy64,2617
- PetscErrorCode (*compose)compose65,2661
- PetscErrorCode (*query)query66,2730
- PetscErrorCode (*composefunction)composefunction67,2799
- PetscErrorCode (*queryfunction)queryfunction68,2879
-} PetscOps;69,2958
- PETSC_FORTRAN_CALLBACK_CLASS,72,2986
- PETSC_FORTRAN_CALLBACK_SUBTYPE,73,3018
- PETSC_FORTRAN_CALLBACK_MAXTYPE74,3052
-} PetscFortranCallbackType;75,3085
-typedef size_t PetscFortranCallbackId;76,3113
-#define PETSC_SMALLEST_FORTRAN_CALLBACK 77,3152
- void (*func)func82,3477
- void *ctx;ctx83,3499
-} PetscFortranCallback;84,3512
-#define PETSC_MAX_OPTIONS_HANDLER 92,3784
-typedef struct _p_PetscObject 93,3820
- PetscOps bops[bops94,3852
- PetscClassId classid;95,3877
- MPI_Comm comm;96,3902
- PetscObjectId id;97,3924
- PetscInt refct;98,4071
- PetscErrorCode (*non_cyclic_references)non_cyclic_references99,4094
- PetscInt64 cidx;100,4162
- PetscMPIInt tag;101,4188
- PetscFunctionList qlist;102,4213
- PetscObjectList olist;103,4240
- char *class_name;class_name104,4267
- char *description;description105,4325
- char *mansec;mansec106,4358
- char *type_name;type_name107,4386
- char *name;name108,4484
- char *prefix;prefix109,4510
- PetscInt tablevel;110,4538
- void *cpp;cpp111,4568
- PetscObjectState state;112,4593
- PetscInt int_idmax,113,4620
- PetscInt int_idmax, intstar_idmax;113,4620
- PetscObjectState *intcomposedstate,intcomposedstate114,4666
- PetscObjectState *intcomposedstate, *intstarcomposedstate;intstarcomposedstate114,4666
- PetscInt *intcomposeddata,intcomposeddata115,4727
- PetscInt *intcomposeddata, **intstarcomposeddata;intstarcomposeddata115,4727
- PetscInt real_idmax,116,4787
- PetscInt real_idmax, realstar_idmax;116,4787
- PetscObjectState *realcomposedstate,realcomposedstate117,4835
- PetscObjectState *realcomposedstate, *realstarcomposedstate;realstarcomposedstate117,4835
- PetscReal *realcomposeddata,realcomposeddata118,4898
- PetscReal *realcomposeddata, **realstarcomposeddata;realstarcomposeddata118,4898
- PetscInt scalar_idmax,119,4960
- PetscInt scalar_idmax, scalarstar_idmax;119,4960
- PetscObjectState *scalarcomposedstate,scalarcomposedstate120,5012
- PetscObjectState *scalarcomposedstate, *scalarstarcomposedstate;scalarstarcomposedstate120,5012
- PetscScalar *scalarcomposeddata,scalarcomposeddata121,5079
- PetscScalar *scalarcomposeddata, **scalarstarcomposeddata;scalarstarcomposeddata121,5079
- void (**fortran_func_pointers)fortran_func_pointers122,5145
- PetscFortranCallbackId num_fortran_func_pointers;123,5280
- PetscFortranCallback *fortrancallback[fortrancallback124,5384
- PetscFortranCallbackId num_fortrancallback[num_fortrancallback125,5458
- void *python_context;python_context126,5536
- PetscErrorCode (*python_destroy)python_destroy127,5577
- PetscInt noptionhandler;129,5622
- PetscErrorCode (*optionhandler[optionhandler130,5649
- PetscErrorCode (*optiondestroy[optiondestroy131,5752
- void *optionctx[optionctx132,5835
- PetscBool amsmem;134,5910
- PetscBool amspublishblock;135,6023
- PetscOptions options;137,6144
- PetscBool optionsprinted;138,6216
- PetscBool donotPetscObjectPrintClassNamePrefixType;139,6247
-} _p_PetscObject;140,6304
-#define PETSCHEADER(142,6323
-#define PETSCFREEDHEADER 146,6405
-PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscObjectDestroyFunction)PetscObjectDestroyFunction148,6434
-PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscObjectViewFunction)PetscObjectViewFunction149,6585
-#define PetscHeaderCreate(280,11300
-#define PetscHeaderDestroy(341,13197
- #define PetscCheckPointer(359,14414
- #define PetscValidHeaderSpecific(367,14653
- #define PetscValidHeaderSpecificType(371,14756
- #define PetscValidHeader(375,14866
- #define PetscValidPointer(379,14957
- #define PetscValidCharPointer(383,15049
- #define PetscValidIntPointer(387,15145
- #define PetscValidInt64Pointer(391,15240
- #define PetscValidCountPointer(395,15337
- #define PetscValidBoolPointer(399,15434
- #define PetscValidScalarPointer(403,15530
- #define PetscValidRealPointer(407,15628
- #define PetscValidFunction(411,15724
- #define PetscValidHeaderSpecificType(419,15963
- #define PetscValidPointer_Internal(427,16390
- #define PetscValidHeaderSpecific(433,16790
- #define PetscValidHeader(442,17270
- #define PetscValidPointer(449,17789
- #define PetscValidCharPointer(450,17888
- #define PetscValidIntPointer(451,17985
- #define PetscValidInt64Pointer(452,18085
- #define PetscValidCountPointer(453,18187
- #define PetscValidBoolPointer(454,18291
- #define PetscValidScalarPointer(455,18393
- #define PetscValidRealPointer(456,18499
- #define PetscValidFunction(458,18602
-#define PetscSorted(492,19710
- #define PetscCheckSameType(506,20037
- #define PetscCheckTypeName(511,20161
- #define PetscCheckTypeNames(515,20255
- #define PetscValidType(519,20358
- #define PetscCheckSameComm(523,20447
- #define PetscCheckSameTypeAndComm(528,20571
- #define PetscValidLogicalCollectiveScalar(533,20702
- #define PetscValidLogicalCollectiveReal(538,20834
- #define PetscValidLogicalCollectiveInt(543,20964
- #define PetscValidLogicalCollectiveMPIInt(548,21093
- #define PetscValidLogicalCollectiveBool(553,21225
- #define PetscValidLogicalCollectiveEnum(558,21355
- #define PetscCheckSorted(563,21485
- #define PetscCheckSameType(581,22041
- #define PetscCheckSameType(588,22528
- #define PetscCheckTypeName(598,22704
- #define PetscCheckTypeNames(605,23034
- #define PetscValidType(615,23460
- #define PetscCheckSameComm(620,23742
- #define PetscCheckSameTypeAndComm(627,24191
- #define PetscValidLogicalCollectiveScalar(633,24377
- #define PetscValidLogicalCollectiveReal(650,25139
- #define PetscValidLogicalCollectiveInt(664,25721
- #define PetscValidLogicalCollectiveMPIInt(673,26169
- #define PetscValidLogicalCollectiveBool(682,26636
- #define PetscValidLogicalCollectiveEnum(691,27107
- #define PetscCheckSorted(700,27578
-template <typename Ta,709,27868
-template <typename Ta,711,27947
-template <typename Ta,713,28016
-template <typename Ta, typename Tb,713,28016
-template <typename Ta,717,28153
-template <typename Ta,719,28232
-template <typename Ta,721,28318
-template <typename Ta,723,28407
-template <typename Ta,725,28494
-template <typename Ta,727,28580
-template <typename Ta,729,28669
-template <typename Ta,731,28756
-#define PetscTryMethod(762,30005
-#define PetscUseMethod(794,31301
- #define PetscUseTypeMethod(816,32243
- #define PetscTryTypeMethod(825,32664
- #define PetscUseTypeMethod(858,33801
- #define PetscTryTypeMethod(886,35128
-#define PetscObjectStateIncrease(929,36879
-PETSC_EXTERN PetscInt PetscObjectComposedDataMax;940,37655
-#define PetscObjectComposedDataSetInt(968,38705
-#define PetscObjectComposedDataGetInt(998,39927
-#define PetscObjectComposedDataSetIntstar(1025,41097
-#define PetscObjectComposedDataGetIntstar(1056,42396
-#define PetscObjectComposedDataSetReal(1081,43479
-#define PetscObjectComposedDataGetReal(1109,44662
-#define PetscObjectComposedDataSetRealstar(1136,45919
-#define PetscObjectComposedDataGetRealstar(1167,47308
- #define PetscObjectComposedDataSetScalar(1193,48548
- #define PetscObjectComposedDataSetScalar(1195,48805
- #define PetscObjectComposedDataGetScalar(1224,50023
- #define PetscObjectComposedDataGetScalar(1226,50259
- #define PetscObjectComposedDataSetScalarstar(1255,51502
- #define PetscObjectComposedDataSetScalarstar(1258,51785
- #define PetscObjectComposedDataGetScalarstar(1290,53119
- #define PetscObjectComposedDataGetScalarstar(1292,53371
-PETSC_EXTERN PetscMPIInt Petsc_Counter_keyval;1295,53503
-PETSC_EXTERN PetscMPIInt Petsc_InnerComm_keyval;1296,53550
-PETSC_EXTERN PetscMPIInt Petsc_OuterComm_keyval;1297,53599
-PETSC_EXTERN PetscMPIInt Petsc_Seq_keyval;1298,53648
-PETSC_EXTERN PetscMPIInt Petsc_ShmComm_keyval;1299,53691
-PETSC_EXTERN PetscMPIInt Petsc_CreationIdx_keyval;1300,53738
-PETSC_EXTERN PetscMPIInt Petsc_Garbage_HMap_keyval;1301,53789
-struct PetscCommStash 1303,53842
- struct PetscCommStash *next;next1304,53866
- MPI_Comm comm;1305,53897
- PetscMPIInt tag;1313,54089
- PetscInt refcount;1314,54151
- PetscInt namecount;1315,54261
- PetscMPIInt *iflags;iflags1316,54359
- struct PetscCommStash *comms;comms1317,54502
-} PetscCommCounter;1318,54608
- STATE_BEGIN,1321,54644
- STATE_PENDING,1322,54659
- STATE_END1323,54676
-} SRState;1324,54688
- PETSC_SR_REDUCE_SUM 1327,54715
- PETSC_SR_REDUCE_MAX 1328,54742
- PETSC_SR_REDUCE_MIN 1329,54769
-} PetscSRReductionType;1330,54795
- MPI_Comm comm;1333,54837
- MPI_Request request;1334,54858
- PetscBool mix;1335,54882
- PetscBool async;1336,54902
- PetscScalar *lvalues;lvalues1337,54924
- PetscScalar *gvalues;gvalues1338,55016
- void **invecs;invecs1339,55086
- PetscInt *reducetype;reducetype1340,55171
- PetscScalar v;1342,55258
- PetscInt i;1343,55277
- } *lvalues_mix,lvalues_mix1344,55296
- } *lvalues_mix, *gvalues_mix;gvalues_mix1344,55296
- SRState state;1345,55375
- PetscInt maxops;1346,55458
- PetscInt numopsbegin;1347,55545
- PetscInt numopsend;1348,55633
-} PetscSplitReduction;1349,55726
-typedef ck_spinlock_t PetscSpinlock;1366,56309
-static inline PetscErrorCode PetscSpinlockCreate(1367,56353
-static inline PetscErrorCode PetscSpinlockLock(1372,56479
-static inline PetscErrorCode PetscSpinlockUnlock(1377,56603
-static inline PetscErrorCode PetscSpinlockDestroy(1382,56731
-typedef omp_lock_t PetscSpinlock;1389,56886
-static inline PetscErrorCode PetscSpinlockCreate(1390,56930
-static inline PetscErrorCode PetscSpinlockLock(1395,57047
-static inline PetscErrorCode PetscSpinlockUnlock(1400,57161
-static inline PetscErrorCode PetscSpinlockDestroy(1405,57279
-typedef int PetscSpinlock;1415,57518
- #define PetscSpinlockCreate(1416,57545
- #define PetscSpinlockLock(1417,57583
- #define PetscSpinlockUnlock(1418,57621
- #define PetscSpinlockDestroy(1419,57659
-PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockOpen;1423,57746
-PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockStdout;1424,57803
-PETSC_INTERN PetscSpinlock PetscViewerASCIISpinLockStderr;1425,57862
-PETSC_INTERN PetscSpinlock PetscCommSpinLock;1426,57921
-PETSC_EXTERN PetscLogEvent PETSC_Barrier;1430,57984
-PETSC_EXTERN PetscLogEvent PETSC_BuildTwoSided;1431,58026
-PETSC_EXTERN PetscLogEvent PETSC_BuildTwoSidedF;1432,58074
-PETSC_EXTERN PetscBool use_gpu_aware_mpi;1433,58123
-PETSC_EXTERN PetscBool PetscPrintFunctionList;1434,58169
-PETSC_EXTERN int64_t Petsc_adios_group;1437,58251
-PETSC_INTERN PetscBool PetscBeganKokkos;1441,58330
-PETSC_EXTERN PetscBool PetscKokkosInitialized;1442,58376
-PETSC_EXTERN PetscInt PetscNumOMPThreads;1448,58605
-
include/petsc/private/pcpatchimpl.h,5634
pcpatchimpl.h:^?pcpatchimpl.h^A,1
#define PETSC_PCPATCHIMPL_H5,86
@@ -70943,222 +71522,6 @@
#define KSPCheckDot(468,19446
#define KSPCheckNorm(511,21278
-include/petsc/private/dmpleximpl.h,9985
-dmpleximpl.h:^?dmpleximpl.h^A,1
-#define _PLEXIMPL_H2,20
-PETSC_EXTERN PetscLogEvent DMPLEX_Interpolate;14,300
-PETSC_EXTERN PetscLogEvent DMPLEX_Partition;15,347
-PETSC_EXTERN PetscLogEvent DMPLEX_PartSelf;16,392
-PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelInvert;17,436
-PETSC_EXTERN PetscLogEvent DMPLEX_PartLabelCreateSF;18,487
-PETSC_EXTERN PetscLogEvent DMPLEX_PartStratSF;19,540
-PETSC_EXTERN PetscLogEvent DMPLEX_CreatePointSF;20,587
-PETSC_EXTERN PetscLogEvent DMPLEX_Distribute;21,636
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeCones;22,682
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeLabels;23,733
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeSF;24,785
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeOverlap;25,833
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeField;26,886
-PETSC_EXTERN PetscLogEvent DMPLEX_DistributeData;27,937
-PETSC_EXTERN PetscLogEvent DMPLEX_Migrate;28,987
-PETSC_EXTERN PetscLogEvent DMPLEX_InterpolateSF;29,1030
-PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalBegin;30,1079
-PETSC_EXTERN PetscLogEvent DMPLEX_GlobalToNaturalEnd;31,1135
-PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalBegin;32,1189
-PETSC_EXTERN PetscLogEvent DMPLEX_NaturalToGlobalEnd;33,1245
-PETSC_EXTERN PetscLogEvent DMPLEX_Stratify;34,1299
-PETSC_EXTERN PetscLogEvent DMPLEX_Symmetrize;35,1343
-PETSC_EXTERN PetscLogEvent DMPLEX_Preallocate;36,1389
-PETSC_EXTERN PetscLogEvent DMPLEX_ResidualFEM;37,1436
-PETSC_EXTERN PetscLogEvent DMPLEX_JacobianFEM;38,1483
-PETSC_EXTERN PetscLogEvent DMPLEX_InterpolatorFEM;39,1530
-PETSC_EXTERN PetscLogEvent DMPLEX_InjectorFEM;40,1581
-PETSC_EXTERN PetscLogEvent DMPLEX_IntegralFEM;41,1628
-PETSC_EXTERN PetscLogEvent DMPLEX_CreateGmsh;42,1675
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalanceSharedPoints;43,1721
-PETSC_EXTERN PetscLogEvent DMPLEX_CreateFromFile;44,1778
-PETSC_EXTERN PetscLogEvent DMPLEX_BuildFromCellList;45,1828
-PETSC_EXTERN PetscLogEvent DMPLEX_BuildCoordinatesFromCellList;46,1881
-PETSC_EXTERN PetscLogEvent DMPLEX_LocatePoints;47,1945
-PETSC_EXTERN PetscLogEvent DMPLEX_TopologyView;48,1993
-PETSC_EXTERN PetscLogEvent DMPLEX_LabelsView;49,2041
-PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesView;50,2087
-PETSC_EXTERN PetscLogEvent DMPLEX_SectionView;51,2138
-PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorView;52,2185
-PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorView;53,2237
-PETSC_EXTERN PetscLogEvent DMPLEX_TopologyLoad;54,2288
-PETSC_EXTERN PetscLogEvent DMPLEX_LabelsLoad;55,2336
-PETSC_EXTERN PetscLogEvent DMPLEX_CoordinatesLoad;56,2382
-PETSC_EXTERN PetscLogEvent DMPLEX_SectionLoad;57,2433
-PETSC_EXTERN PetscLogEvent DMPLEX_GlobalVectorLoad;58,2480
-PETSC_EXTERN PetscLogEvent DMPLEX_LocalVectorLoad;59,2532
-PETSC_EXTERN PetscLogEvent DMPLEX_MetricEnforceSPD;60,2583
-PETSC_EXTERN PetscLogEvent DMPLEX_MetricNormalize;61,2635
-PETSC_EXTERN PetscLogEvent DMPLEX_MetricAverage;62,2686
-PETSC_EXTERN PetscLogEvent DMPLEX_MetricIntersection;63,2735
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalBuildGraph;65,2790
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalRewriteSF;66,2841
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalGatherGraph;67,2891
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalPartition;68,2943
-PETSC_EXTERN PetscLogEvent DMPLEX_RebalScatterPart;69,2993
- int index;73,3133
- unsigned int zoneID;74,3177
- unsigned int first;75,3200
- unsigned int last;76,3222
- int type;77,3243
- int nd;78,3264
- void *data;data79,3315
-} FluentSection;80,3336
-struct _PetscGridHash 82,3354
- PetscInt dim;83,3378
- PetscReal lower[lower84,3398
- PetscReal upper[upper85,3454
- PetscReal extent[extent86,3511
- PetscReal h[h87,3558
- PetscInt n[n88,3608
- PetscSection cellSection;89,3665
- IS cells;90,3731
- DMLabel cellsSparse;91,3794
- PetscBool isotropic;95,3877
- PetscBool uniform;96,3945
- PetscBool restrictAnisotropyFirst;97,4011
- PetscBool noInsert;98,4101
- PetscBool noSwap;99,4190
- PetscBool noMove;100,4270
- PetscBool noSurf;101,4349
- PetscReal h_min,102,4435
- PetscReal h_min, h_max;102,4435
- PetscReal a_max;103,4522
- PetscReal targetComplexity;104,4594
- PetscReal p;105,4662
- PetscReal gradationFactor;106,4742
- PetscReal hausdorffNumber;107,4835
- PetscInt numIter;108,4977
- PetscInt verbosity;109,5064
-} DMPlexMetricCtx;110,5170
- PetscInt refct;125,5638
- PetscSection coneSection;127,5657
- PetscInt *cones;cones128,5730
- PetscInt *coneOrientations;coneOrientations129,5789
- PetscSection supportSection;130,5957
- PetscInt *supports;supports131,6030
- PetscInt *facesTmp;facesTmp132,6089
- PetscBool refinementUniform;135,6183
- char *transformType;transformType136,6290
- PetscReal refinementLimit;137,6410
- PetscErrorCode (*refinementFunc)refinementFunc138,6516
- DMPlexInterpolatedFlag interpolated;141,6665
- DMPlexInterpolatedFlag interpolatedCollective;142,6704
- DMPlexReorderDefaultFlag reorderDefault;144,6754
- PetscBool distDefault;147,6851
- PetscInt overlap;148,6916
- PetscInt numOvLabels;149,7039
- DMLabel ovLabels[ovLabels150,7130
- PetscInt ovValues[ovValues151,7207
- PetscInt numOvExLabels;152,7290
- DMLabel ovExLabels[ovExLabels153,7366
- PetscInt ovExValues[ovExValues154,7449
- char *distributionName;distributionName155,7538
- PetscBool regularRefinement;158,7646
- char *tetgenOpts;tetgenOpts161,7768
- char *triangleOpts;triangleOpts162,7799
- PetscPartitioner partitioner;163,7832
- PetscBool partitionBalance;164,7864
- PetscBool remeshBd;165,7957
- DMLabel subpointMap;168,8003
- IS subpointIS;169,8141
- PetscObjectState subpointState;170,8263
- PetscObjectState depthState;173,8395
- PetscObjectState celltypeState;174,8503
- IS globalVertexNumbers;175,8614
- IS globalCellNumbers;176,8654
- PetscSection anchorSection;179,8713
- IS anchorIS;180,8799
- PetscErrorCode (*createanchors)createanchors181,8881
- PetscErrorCode (*computeanchormatrix)computeanchormatrix182,8989
- PetscSection parentSection;185,9159
- PetscInt *parents;parents186,9224
- PetscInt *childIDs;childIDs187,9276
- PetscSection childSection;188,9330
- PetscInt *children;children189,9392
- DM referenceTree;190,9446
- PetscErrorCode (*getchildsymmetry)getchildsymmetry191,9523
- PetscSection subdomainSection;194,9662
- PetscBool useAnchors;197,9714
- PetscErrorCode (*useradjacency)useradjacency198,9866
- void *useradjacencyctx;useradjacencyctx199,9981
- PetscInt maxProjectionHeight;202,10114
- PetscInt activePoint;203,10208
- PetscInt vtkCellHeight;206,10296
- PetscReal scale[scale207,10383
- PetscBool ignoreModel;210,10470
- PetscReal minradius;211,10570
- PetscBool useHashLocation;212,10670
- PetscGridHash lbox;213,10762
- void (*coordFunc)coordFunc214,10842
- PetscMPIInt *neighbors;neighbors218,11261
- DMPlexMetricCtx *metricCtx;metricCtx221,11303
- PetscBool printSetValues;224,11352
- PetscInt printFEM;225,11380
- PetscInt printL2;226,11402
- PetscInt printLocate;227,11423
- PetscReal printTol;228,11448
-} DM_Plex;229,11470
-struct _n_DMPlexStorageVersion 272,14446
- int major,273,14479
- int major, minor,273,14479
- int major, minor, subminor;273,14479
-typedef struct _n_DMPlexStorageVersion *DMPlexStorageVersion;DMPlexStorageVersion275,14512
-static inline PetscInt DihedralInvert(352,22524
-static inline PetscInt DihedralCompose(357,22624
-static inline PetscInt DihedralSwap(363,22863
-static inline PetscInt DihedralInvert(375,23299
-static inline PetscInt DihedralCompose(395,23910
-static inline PetscInt DihedralSwap(415,24537
-static inline void DMPlex_Mult2D_Internal(444,26170
-static inline void DMPlex_Mult3D_Internal(451,26482
-static inline void DMPlex_MultTranspose2D_Internal(459,26903
-static inline void DMPlex_MultTranspose3D_Internal(466,27224
-static inline void DMPlex_Mult2DReal_Internal(474,27654
-static inline void DMPlex_Mult3DReal_Internal(481,27968
-static inline void DMPlex_MultAdd2DReal_Internal(489,28391
-static inline void DMPlex_MultAdd3DReal_Internal(496,28686
-static inline void DMPlex_MultTransposeReal_Internal(513,29233
-static inline void DMPlex_MultTranspose2DReal_Internal(525,29655
-static inline void DMPlex_MultTranspose3DReal_Internal(532,29978
-static inline void DMPlex_MatMult2D_Internal(541,30411
-#define PLEX_DIM__ 543,30547
-#undef PLEX_DIM__551,30838
-static inline void DMPlex_MatMult3D_Internal(553,30858
-#define PLEX_DIM__ 555,30994
-#undef PLEX_DIM__563,31285
-static inline void DMPlex_MatMultTranspose2D_Internal(565,31305
-#define PLEX_DIM__ 567,31450
-#undef PLEX_DIM__575,31750
-static inline void DMPlex_MatMultTranspose3D_Internal(577,31770
-#define PLEX_DIM__ 579,31915
-#undef PLEX_DIM__587,32215
-static inline void DMPlex_MatMultLeft2D_Internal(590,32236
-static inline void DMPlex_MatMultLeft3D_Internal(595,32510
-static inline void DMPlex_MatMultTransposeLeft2D_Internal(600,32784
-static inline void DMPlex_MatMultTransposeLeft3D_Internal(605,33058
-static inline void DMPlex_PTAP2DReal_Internal(611,33333
-static inline void DMPlex_PTAP3DReal_Internal(626,33795
-static inline void DMPlex_PTAPReal_Internal(642,34297
-static inline void DMPlex_Transpose2D_Internal(656,34709
-static inline void DMPlex_Transpose3D_Internal(663,34840
-static inline void DMPlex_Invert2D_Internal(677,35060
-static inline void DMPlex_Invert3D_Internal(688,35336
-static inline void DMPlex_Det2D_Internal(704,36313
-static inline void DMPlex_Det3D_Internal(710,36462
-static inline void DMPlex_Det2D_Scalar_Internal(716,36817
-static inline void DMPlex_Det3D_Scalar_Internal(722,37035
-static inline void DMPlex_WaxpyD_Internal(728,37624
-static inline PetscReal DMPlex_DotD_Internal(734,37818
-static inline PetscReal DMPlex_DotRealD_Internal(742,38039
-static inline PetscReal DMPlex_NormD_Internal(750,38247
-static inline PetscReal DMPlex_DistD_Internal(758,38447
-
include/petsc/private/hashsetij.h,31
hashsetij.h:^?hashsetij.h^A,1
#define PETSC_HASHSETIJ_H2,26
@@ -71205,369 +71568,6 @@
void *ptr;ptr10,178
} PetscGarbage;11,198
-include/petsc/private/dmnetworkimpl.h,4039
-dmnetworkimpl.h:^?dmnetworkimpl.h^A,1
-#define _NETWORKIMPL_H2,23
-PETSC_EXTERN PetscLogEvent DMNetwork_LayoutSetUp;9,283
-PETSC_EXTERN PetscLogEvent DMNetwork_SetUpNetwork;10,333
-PETSC_EXTERN PetscLogEvent DMNetwork_Distribute;11,384
-#define DMNETWORK_MAX_COMP_REGISTERED_DEFAULT 13,434
-#define DMNETWORK_MAX_COMP_AT_POINT_DEFAULT 14,483
-typedef struct _p_DMNetworkComponentHeader *DMNetworkComponentHeader;DMNetworkComponentHeader16,532
-struct _p_DMNetworkComponentHeader 17,602
- PetscInt index;18,639
- PetscInt subnetid;19,710
- PetscInt ndata;20,755
- PetscInt hsize;21,803
- PetscInt maxcomps;22,849
- PetscInt *size;size29,1288
- PetscInt *key;key30,1348
- PetscInt *offset;offset31,1395
- PetscInt *nvar;nvar32,1458
- PetscInt *offsetvarrel;offsetvarrel33,1528
-typedef struct _p_DMNetworkComponentValue *DMNetworkComponentValue;DMNetworkComponentValue36,1689
-struct _p_DMNetworkComponentValue 37,1757
- void **data;data38,1793
- char name[name42,1899
- PetscInt size;43,1939
-} DMNetworkComponent PETSC_ATTRIBUTEALIGNED(PetscMax(sizeof(double), sizeof(PetscScalar)44,1956
- PetscSection DofSection;48,2118
- PetscSection GlobalDofSection;49,2155
- ISLocalToGlobalMapping mapping;50,2198
- PetscSF sf;51,2232
-} DMNetworkVertexInfo;52,2261
- PetscSection DofSection;55,2302
- PetscSection GlobalDofSection;56,2339
- ISLocalToGlobalMapping mapping;57,2382
- PetscSF sf;58,2416
-} DMNetworkEdgeInfo;59,2445
- PetscInt gidx;72,3000
- PetscInt n;73,3070
- PetscInt *sv;sv74,3155
-} SVtx;75,3240
- SVNONE 77,3263
- SVFROM 78,3278
- SVTO 79,3292
-} SVtxType;80,3305
- PetscInt Nvtx,83,3335
- PetscInt Nvtx, nvtx;83,3335
- PetscInt Nedge,84,3399
- PetscInt Nedge, nedge;84,3399
- PetscInt eStart,85,3460
- PetscInt eStart, eEnd;85,3460
- PetscInt vStart,86,3529
- PetscInt vStart, vEnd;86,3529
- PetscInt *edgelist;edgelist87,3600
- PetscInt *vertices;vertices88,3773
- PetscInt *edges;edges89,3896
- char name[name90,4014
-} DMSubnetwork;91,4055
-typedef struct _p_DMNetworkCloneShared *DMNetworkCloneShared;DMNetworkCloneShared100,4475
-struct _p_DMNetworkCloneShared 101,4537
- PetscInt refct;102,4570
- PetscInt NEdges,103,4646
- PetscInt NEdges, nEdges;103,4646
- PetscInt NVertices,104,4715
- PetscInt NVertices, nVertices;104,4715
- PetscInt pStart,105,4787
- PetscInt pStart, pEnd;105,4787
- PetscInt vStart,106,4872
- PetscInt vStart, vEnd;106,4872
- PetscInt eStart,107,4947
- PetscInt eStart, eEnd;107,4947
- PetscBool distributecalled;108,5019
- PetscInt *vltog;vltog109,5099
- PetscInt nsubnet,111,5210
- PetscInt nsubnet, Nsubnet;111,5210
- DMSubnetwork *subnet;subnet112,5295
- PetscInt *subnetvtx,subnetvtx113,5353
- PetscInt *subnetvtx, *subnetedge;subnetedge113,5353
- SVtx *svtx;svtx114,5456
- PetscInt nsvtx,115,5542
- PetscInt nsvtx, Nsvtx;115,5542
- PetscInt *svertices;svertices116,5628
- PetscInt *sedgelist;sedgelist117,5732
- PetscTable svtable;118,5807
- DMNetworkCloneShared cloneshared;122,5986
- DM plex;123,6022
- PetscSection DataSection;125,6241
- PetscSection DofSection;126,6332
- PetscSection GlobalDofSection;127,6418
- DMNetworkVertexInfo vertex;129,6485
- DMNetworkEdgeInfo edge;130,6515
- PetscInt ncomponent;132,6544
- DMNetworkComponent *component;component133,6646
- DMNetworkComponentHeader header;134,6746
- DMNetworkComponentValue cvalue;135,6791
- DMNetworkComponentGenericDataType *componentdataarray;componentdataarray136,6836
- PetscBool componentsetup;137,6924
- PetscInt max_comps_registered;138,7064
- PetscBool userEdgeJacobian,140,7179
- PetscBool userEdgeJacobian, userVertexJacobian;140,7179
- Mat *Je;Je141,7278
- Mat *Jv;Jv142,7410
- PetscInt *Jvptr;Jvptr143,7553
-} DM_Network;148,7991
-
-include/petsc/private/dmimpl.h,11889
-dmimpl.h:^?dmimpl.h^A,1
-#define _DMIMPL_H3,19
-PETSC_EXTERN PetscBool DMRegisterAllCalled;13,271
-typedef PetscErrorCode (*NullSpaceFunc)NullSpaceFunc15,369
-typedef struct _PetscHashAuxKey 17,479
- DMLabel label;18,513
- PetscInt value;19,531
- PetscInt part;20,549
-} PetscHashAuxKey;21,566
-#define PetscHashAuxKeyHash(23,586
-#define PetscHashAuxKeyEqual(25,739
-PETSC_HASH_MAP(27,872
-struct _n_DMGeneratorFunctionList 29,968
- PetscErrorCode (*generate)generate30,1004
- PetscErrorCode (*refine)refine31,1055
- PetscErrorCode (*adapt)adapt32,1106
- char *name;name33,1166
- PetscInt dim;34,1198
- DMGeneratorFunctionList next;35,1229
-typedef struct _DMOps *DMOps;DMOps38,1265
-struct _DMOps 39,1295
- PetscErrorCode (*view)view40,1311
- PetscErrorCode (*load)load41,1354
- PetscErrorCode (*clone)clone42,1397
- PetscErrorCode (*setfromoptions)setfromoptions43,1434
- PetscErrorCode (*setup)setup44,1494
- PetscErrorCode (*createlocalsection)createlocalsection45,1525
- PetscErrorCode (*createdefaultconstraints)createdefaultconstraints46,1569
- PetscErrorCode (*createglobalvector)createglobalvector47,1619
- PetscErrorCode (*createlocalvector)createlocalvector48,1670
- PetscErrorCode (*getlocaltoglobalmapping)getlocaltoglobalmapping49,1720
- PetscErrorCode (*createfieldis)createfieldis50,1769
- PetscErrorCode (*createcoordinatedm)createcoordinatedm51,1837
- PetscErrorCode (*createcoordinatefield)createcoordinatefield52,1887
- PetscErrorCode (*getcoloring)getcoloring54,1946
- PetscErrorCode (*creatematrix)creatematrix55,2013
- PetscErrorCode (*createinterpolation)createinterpolation56,2058
- PetscErrorCode (*createrestriction)createrestriction57,2121
- PetscErrorCode (*createmassmatrix)createmassmatrix58,2175
- PetscErrorCode (*createmassmatrixlumped)createmassmatrixlumped59,2228
- PetscErrorCode (*hascreateinjection)hascreateinjection60,2283
- PetscErrorCode (*createinjection)createinjection61,2340
- PetscErrorCode (*refine)refine63,2393
- PetscErrorCode (*coarsen)coarsen64,2441
- PetscErrorCode (*refinehierarchy)refinehierarchy65,2490
- PetscErrorCode (*coarsenhierarchy)coarsenhierarchy66,2547
- PetscErrorCode (*extrude)extrude67,2605
- PetscErrorCode (*globaltolocalbegin)globaltolocalbegin69,2655
- PetscErrorCode (*globaltolocalend)globaltolocalend70,2721
- PetscErrorCode (*localtoglobalbegin)localtoglobalbegin71,2785
- PetscErrorCode (*localtoglobalend)localtoglobalend72,2851
- PetscErrorCode (*localtolocalbegin)localtolocalbegin73,2915
- PetscErrorCode (*localtolocalend)localtolocalend74,2980
- PetscErrorCode (*destroy)destroy76,3044
- PetscErrorCode (*computevariablebounds)computevariablebounds78,3078
- PetscErrorCode (*createsubdm)createsubdm80,3136
- PetscErrorCode (*createsuperdm)createsuperdm81,3213
- PetscErrorCode (*createfielddecomposition)createfielddecomposition82,3277
- PetscErrorCode (*createdomaindecomposition)createdomaindecomposition83,3363
- PetscErrorCode (*createddscatters)createddscatters84,3457
- PetscErrorCode (*getdimpoints)getdimpoints86,3561
- PetscErrorCode (*locatepoints)locatepoints87,3633
- PetscErrorCode (*getneighbors)getneighbors88,3706
- PetscErrorCode (*getboundingbox)getboundingbox89,3778
- PetscErrorCode (*getlocalboundingbox)getlocalboundingbox90,3844
- PetscErrorCode (*locatepointssubdomain)locatepointssubdomain91,3915
- PetscErrorCode (*projectfunctionlocal)projectfunctionlocal93,3984
- PetscErrorCode (*projectfunctionlabellocal)projectfunctionlabellocal94,4161
- PetscErrorCode (*projectfieldlocal)projectfieldlocal95,4408
- PetscErrorCode (*projectfieldlabellocal)projectfieldlabellocal96,4799
- PetscErrorCode (*projectbdfieldlabellocal)projectbdfieldlabellocal97,5260
- PetscErrorCode (*computel2diff)computel2diff98,5742
- PetscErrorCode (*computel2gradientdiff)computel2gradientdiff99,5913
- PetscErrorCode (*computel2fielddiff)computel2fielddiff100,6130
- PetscErrorCode (*getcompatibility)getcompatibility102,6307
-typedef struct _DMCoarsenHookLink *DMCoarsenHookLink;DMCoarsenHookLink111,6857
-struct _DMCoarsenHookLink 112,6911
- PetscErrorCode (*coarsenhook)coarsenhook113,6939
- PetscErrorCode (*restricthook)restricthook114,7046
- void *ctx;ctx115,7176
- DMCoarsenHookLink next;116,7201
-typedef struct _DMRefineHookLink *DMRefineHookLink;DMRefineHookLink119,7231
-struct _DMRefineHookLink 120,7283
- PetscErrorCode (*refinehook)refinehook121,7310
- PetscErrorCode (*interphook)interphook122,7405
- void *ctx;ctx123,7523
- DMRefineHookLink next;124,7547
-typedef struct _DMSubDomainHookLink *DMSubDomainHookLink;DMSubDomainHookLink127,7576
-struct _DMSubDomainHookLink 128,7634
- PetscErrorCode (*ddhook)ddhook129,7664
- PetscErrorCode (*restricthook)restricthook130,7708
- void *ctx;ctx131,7782
- DMSubDomainHookLink next;132,7809
-typedef struct _DMGlobalToLocalHookLink *DMGlobalToLocalHookLink;DMGlobalToLocalHookLink135,7841
-struct _DMGlobalToLocalHookLink 136,7907
- PetscErrorCode (*beginhook)beginhook137,7941
- PetscErrorCode (*endhook)endhook138,8006
- void *ctx;ctx139,8069
- DMGlobalToLocalHookLink next;140,8100
-typedef struct _DMLocalToGlobalHookLink *DMLocalToGlobalHookLink;DMLocalToGlobalHookLink143,8136
-struct _DMLocalToGlobalHookLink 144,8202
- PetscErrorCode (*beginhook)beginhook145,8236
- PetscErrorCode (*endhook)endhook146,8301
- void *ctx;ctx147,8364
- DMLocalToGlobalHookLink next;148,8395
- DMVEC_STATUS_IN,152,8446
- DMVEC_STATUS_OUT153,8465
-} DMVecStatus;154,8484
-typedef struct _DMNamedVecLink *DMNamedVecLink;DMNamedVecLink155,8499
-struct _DMNamedVecLink 156,8547
- Vec X;157,8572
- char *name;name158,8592
- DMVecStatus status;159,8615
- DMNamedVecLink next;160,8640
-typedef struct _DMWorkLink *DMWorkLink;DMWorkLink163,8667
-struct _DMWorkLink 164,8707
- size_t bytes;165,8728
- void *mem;mem166,8748
- DMWorkLink next;167,8766
-#define DM_MAX_WORK_VECTORS 170,8789
-struct _n_DMLabelLink 172,8905
- DMLabel label;173,8929
- PetscBool output;174,8961
- struct _n_DMLabelLink *next;next175,8994
-typedef struct _n_DMLabelLink *DMLabelLink;DMLabelLink177,9028
-typedef struct _n_Boundary *DMBoundary;DMBoundary179,9073
-struct _n_Boundary 181,9114
- DSBoundary dsboundary;182,9135
- DMLabel label;183,9160
- DMBoundary next;184,9180
-typedef struct _n_Field 187,9203
- PetscObject disc;188,9229
- DMLabel label;189,9325
- PetscBool adjacency[adjacency190,9412
- PetscBool avoidTensor;191,9571
-} RegionField;192,9652
-typedef struct _n_Space 194,9668
- PetscDS ds;195,9694
- DMLabel label;196,9753
- IS fields;197,9839
-} DMSpace;198,9925
-struct _p_UniversalLabel 200,9937
- DMLabel label;201,9964
- PetscInt Nl;202,10011
- char **names;names203,10063
- PetscInt *indices;indices204,10106
- PetscInt Nv;205,10170
- PetscInt *bits;bits206,10238
- PetscInt *masks;masks207,10303
- PetscInt *offsets;offsets208,10380
- PetscInt *values;values209,10455
-#define MAXDMMONITORS 214,10593
- PetscInt dim;217,10635
- DM dm;218,10696
- Vec x;219,10743
- Vec xl;220,10802
- DMField field;221,10861
-} DMCoordinates;222,10918
-struct _p_DM 224,10936
- PETSCHEADER(225,10951
- Vec localin[localin226,10981
- Vec localin[DM_MAX_WORK_VECTORS], localout[localout226,10981
- Vec globalin[globalin227,11059
- Vec globalin[DM_MAX_WORK_VECTORS], globalout[globalout227,11059
- DMNamedVecLink namedglobal;228,11139
- DMNamedVecLink namedlocal;229,11169
- DMWorkLink workin,230,11198
- DMWorkLink workin, workout;230,11198
- DMLabelLink labels;231,11232
- DMLabel depthLabel;232,11292
- DMLabel celltypeLabel;233,11362
- void *ctx;ctx234,11435
- PetscErrorCode (*ctxdestroy)ctxdestroy235,11488
- ISColoringType coloringtype;236,11529
- MatFDColoring fd;237,11568
- VecType vectype;238,11597
- MatType mattype;239,11717
- PetscInt bind_below;240,11805
- PetscInt bs;241,11932
- ISLocalToGlobalMapping ltogmap;242,11961
- PetscBool prealloc_skip;243,11995
- PetscBool prealloc_only;244,12140
- PetscBool structure_only;245,12273
- PetscInt levelup,246,12400
- PetscInt levelup, leveldown;246,12400
- PetscBool setupcalled;247,12584
- PetscBool setfromoptionscalled;248,12758
- void *data;data249,12805
- DM coarseMesh;251,12866
- DM fineMesh;252,12904
- DMCoarsenHookLink coarsenhook;253,12940
- DMRefineHookLink refinehook;254,13041
- DMSubDomainHookLink subdomainhook;255,13079
- DMGlobalToLocalHookLink gtolhook;256,13120
- DMLocalToGlobalHookLink ltoghook;257,13156
- PetscInt dim;259,13209
- PetscHMapAux auxData;261,13280
- PetscSF sfMigration;263,13392
- PetscSF sf;264,13477
- PetscSF sectionSF;265,13538
- PetscSF sfNatural;266,13611
- PetscBool useNatural;267,13679
- PetscBool adjacency[adjacency269,13774
- PetscSection localSection;270,13870
- PetscSection globalSection;271,13931
- PetscLayout map;272,13993
- PetscSection section;275,14044
- Mat mat;276,14070
- Vec bias;277,14092
- } defaultConstraint;278,14115
- DM transformDM;280,14167
- Vec transform;281,14227
- void *transformCtx;transformCtx282,14285
- PetscErrorCode (*transformSetUp)transformSetUp283,14342
- PetscErrorCode (*transformDestroy)transformDestroy284,14390
- PetscErrorCode (*transformGetMatrix)transformGetMatrix285,14440
- DMCoordinates coordinates[coordinates287,14564
- PetscReal *Lstart,Lstart289,14699
- PetscReal *Lstart, *L,L289,14699
- PetscReal *Lstart, *L, *maxCell;maxCell289,14699
- PetscBool sparseLocalize;290,14807
- NullSpaceFunc nullspaceConstructors[nullspaceConstructors292,14992
- NullSpaceFunc nearnullspaceConstructors[nearnullspaceConstructors293,15035
- PetscInt Nf;295,15124
- RegionField *fields;fields296,15200
- DMBoundary boundary;297,15287
- PetscInt Nds;298,15346
- DMSpace *probs;probs299,15432
- DM dmBC;301,15515
- PetscInt outputSequenceNum;302,15601
- PetscReal outputSequenceVal;303,15677
- PetscErrorCode (*monitor[monitor304,15752
- PetscErrorCode (*monitordestroy[monitordestroy305,15808
- void *monitorcontext[monitorcontext306,15868
- PetscInt numbermonitors;307,15910
- PetscObject dmksp,309,15938
- PetscObject dmksp, dmsnes,309,15938
- PetscObject dmksp, dmsnes, dmts;309,15938
- Ceed ceed;311,15999
- CeedElemRestriction ceedERestrict;312,16058
-PETSC_EXTERN PetscLogEvent DM_Convert;316,16171
-PETSC_EXTERN PetscLogEvent DM_GlobalToLocal;317,16210
-PETSC_EXTERN PetscLogEvent DM_LocalToGlobal;318,16255
-PETSC_EXTERN PetscLogEvent DM_LocatePoints;319,16300
-PETSC_EXTERN PetscLogEvent DM_Coarsen;320,16344
-PETSC_EXTERN PetscLogEvent DM_Refine;321,16383
-PETSC_EXTERN PetscLogEvent DM_CreateInterpolation;322,16421
-PETSC_EXTERN PetscLogEvent DM_CreateRestriction;323,16472
-PETSC_EXTERN PetscLogEvent DM_CreateInjection;324,16521
-PETSC_EXTERN PetscLogEvent DM_CreateMatrix;325,16568
-PETSC_EXTERN PetscLogEvent DM_CreateMassMatrix;326,16612
-PETSC_EXTERN PetscLogEvent DM_Load;327,16660
-PETSC_EXTERN PetscLogEvent DM_AdaptInterpolator;328,16696
-static inline PetscErrorCode DMGetLocalOffset_Private(403,18927
-static inline PetscErrorCode DMGetLocalFieldOffset_Private(426,19714
-static inline PetscErrorCode DMGetGlobalOffset_Private(448,20556
-static inline PetscErrorCode DMGetGlobalFieldOffset_Private(474,21788
-
include/petsc/private/characteristicimpl.h,2871
characteristicimpl.h:^?characteristicimpl.h^A,1
#define __CHARACTERISTICIMPL_H3,32
@@ -76255,33 +76255,33 @@
#define PETSCDMDADEF_H6,116
#define DMDAStencilType 13,287
#define DMDALocalInfo 15,322
-#define DMDA_LOCAL_INFO_SIZE 20,522
-#define DMDA_LOCAL_INFO_DIM 21,554
-#define DMDA_LOCAL_INFO_DOF 22,584
-#define DMDA_LOCAL_INFO_MX 23,614
-#define DMDA_LOCAL_INFO_MY 24,643
-#define DMDA_LOCAL_INFO_MZ 25,672
-#define DMDA_LOCAL_INFO_XS 26,701
-#define DMDA_LOCAL_INFO_YS 27,730
-#define DMDA_LOCAL_INFO_ZS 28,759
-#define DMDA_LOCAL_INFO_XM 29,788
-#define DMDA_LOCAL_INFO_YM 30,818
-#define DMDA_LOCAL_INFO_ZM 31,848
-#define DMDA_LOCAL_INFO_GXS 32,878
-#define DMDA_LOCAL_INFO_GYS 33,909
-#define DMDA_LOCAL_INFO_GZS 34,940
-#define DMDA_LOCAL_INFO_GXM 35,971
-#define DMDA_LOCAL_INFO_GYM 36,1002
-#define DMDA_LOCAL_INFO_GZM 37,1033
-#define XG_RANGE 39,1065
-#define YG_RANGE 40,1156
-#define ZG_RANGE 41,1247
-#define X_RANGE 42,1338
-#define Y_RANGE 43,1425
-#define Z_RANGE 44,1512
-#define DMDAInterpolationType 46,1600
-#define DMDAElementType 47,1640
-#define PetscGLL 49,1675
+#define DMDA_LOCAL_INFO_SIZE 20,524
+#define DMDA_LOCAL_INFO_DIM 21,556
+#define DMDA_LOCAL_INFO_DOF 22,586
+#define DMDA_LOCAL_INFO_MX 23,616
+#define DMDA_LOCAL_INFO_MY 24,645
+#define DMDA_LOCAL_INFO_MZ 25,674
+#define DMDA_LOCAL_INFO_XS 26,703
+#define DMDA_LOCAL_INFO_YS 27,732
+#define DMDA_LOCAL_INFO_ZS 28,761
+#define DMDA_LOCAL_INFO_XM 29,790
+#define DMDA_LOCAL_INFO_YM 30,820
+#define DMDA_LOCAL_INFO_ZM 31,850
+#define DMDA_LOCAL_INFO_GXS 32,880
+#define DMDA_LOCAL_INFO_GYS 33,911
+#define DMDA_LOCAL_INFO_GZS 34,942
+#define DMDA_LOCAL_INFO_GXM 35,973
+#define DMDA_LOCAL_INFO_GYM 36,1004
+#define DMDA_LOCAL_INFO_GZM 37,1035
+#define XG_RANGE 39,1067
+#define YG_RANGE 40,1158
+#define ZG_RANGE 41,1249
+#define X_RANGE 42,1340
+#define Y_RANGE 43,1427
+#define Z_RANGE 44,1514
+#define DMDAInterpolationType 46,1602
+#define DMDAElementType 47,1642
+#define PetscGLL 49,1677
include/petsc/finclude/petsctao.h,1077
petsctao.h:^?petsctao.h^A,1
@@ -77133,6 +77133,30 @@
#define AOMAPPING 15,305
#define AOMEMORYSCALABLE 16,341
+config/configure.py,689
+configure.py:^?configure.py^A,1
+def fixLang(10,215
+def check_for_option_mistakes(24,512
+def check_for_unsupported_combinations(45,1729
+def check_for_option_changed(49,2016
+def check_petsc_arch(71,3115
+def chkenable(89,3767
+def chksynonyms(147,6172
+def chkwincompilerusinglink(197,8097
+def chkdosfiles(203,8287
+def chkcygwinlink(213,8855
+def chkbrokencygwin(224,9570
+def chkusingwindowspython(236,10212
+def chkcygwinpython(244,10577
+def chkcygwinwindowscompilers(262,11317
+def chkrhl9(273,11651
+def chktmpnoexec(291,12313
+def check_cray_modules(312,13527
+def check_broken_configure_log_links(329,14324
+def move_configure_log(336,14626
+def print_final_timestamp(374,16179
+def petsc_configure(381,16415
+
config/testparse.py,457
testparse.py:^?testparse.py^A,1
def getDefaultOutputFileRoot(58,1760
@@ -77235,30 +77259,6 @@
def write_db(1031,39502
def main(1039,39714
-config/configure.py,688
-configure.py:^?configure.py^A,1
-def fixLang(9,190
-def check_for_option_mistakes(23,487
-def check_for_unsupported_combinations(44,1704
-def check_for_option_changed(48,1991
-def check_petsc_arch(70,3090
-def chkenable(88,3742
-def chksynonyms(146,6147
-def chkwincompilerusinglink(196,8072
-def chkdosfiles(202,8262
-def chkcygwinlink(212,8830
-def chkbrokencygwin(223,9545
-def chkusingwindowspython(235,10187
-def chkcygwinpython(243,10552
-def chkcygwinwindowscompilers(261,11292
-def chkrhl9(272,11626
-def chktmpnoexec(290,12288
-def check_cray_modules(311,13502
-def check_broken_configure_log_links(328,14299
-def move_configure_log(335,14601
-def print_final_timestamp(373,16154
-def petsc_configure(380,16390
-
config/report_tests.py,154
report_tests.py:^?report_tests.py^A,1
def inInstallDir(11,212
@@ -77888,6 +77888,85 @@
clean:clean17,383
.PHONY:.PHONY20,430
+config/BuildSystem/config/framework.py,2472
+framework.py:^?framework.py^A,1
+class Framework(57,2461
+ def __init__(59,2634
+ def __getstate__(106,4356
+ def __setstate__(114,4620
+ def listDirs(121,4836
+ def getTmpDir(140,5457
+ def setTmpDir(146,5775
+ def getFileCreatePause(157,6142
+ def setFileCreatePause(161,6307
+ def setupHelp(165,6543
+ def getCleanup(184,8124
+ def setCleanup(189,8253
+ def setupArguments(194,8422
+ def outputBasics(205,9596
+ def logPrintFilesInPath(210,9760
+ def dumpConfFiles(226,10470
+ def saveHash(260,12076
+ def cleanup(272,12603
+ def printSummary(277,12693
+ def addChild(289,13268
+ def getChild(294,13398
+ def createChildren(326,14634
+ def require(341,15104
+ def requireModule(348,15432
+ def loadFramework(356,15713
+ def addPackageDependency(369,16086
+ def updatePackageDependencies(392,16906
+ def updateDependencies(409,17740
+ def setConfigureParent(414,17863
+ def filterPreprocessOutput(421,18025
+ def filterCompileOutput(456,19923
+ def filterLinkOutput(513,23417
+ def addSubstitutionFile(584,27735
+ def getPrefix(605,28425
+ def getHeaderPrefix(614,28667
+ def getSubstitutionPrefix(622,28927
+ def substituteName(630,29183
+ def substituteFile(659,30213
+ def substitute(674,30816
+ def dumpSubstitutions(680,30972
+ def storeSubstitutions(701,31773
+ def outputDefine(717,32685
+ def outputPoison(732,33521
+ def outputMakeMacro(738,33960
+ def outputMakeRule(742,34057
+ def outputMakeRules(752,34306
+ def outputMakeMacros(762,34740
+ def getFullDefineName(774,35216
+ def processDefines(779,35402
+ def outputDefines(794,36158
+ def outputPoisons(801,36416
+ def outputPkgVersion(805,36543
+ def outputTypedefs(839,38689
+ def outputPrototypes(850,39109
+ def outputMakeMacroHeader(859,39564
+ def outputMakeRuleHeader(884,40515
+ def processPackageListDefine(903,41088
+ def outputHeader(909,41320
+ def outputPkgHeader(957,43176
+ def outputCHeader(984,44069
+ def getOptionsString(1024,45437
+ def outputBanner(1035,45832
+ def configureExternalPackagesDir(1047,46349
+ def addBatchSetup(1055,46637
+ def addBatchInclude(1062,46831
+ def addBatchLib(1069,47053
+ def addBatchBody(1076,47247
+ def addBatchCleanup(1083,47477
+ def configureBatch(1090,47684
+ def parallelQueueEvaluation(1159,51324
+ def processChildren(1173,51864
+ def serialEvaluation(1287,57136
+ def findModule(1290,57194
+ def checkChildCxxDialectBounds(1300,57635
+ def processChildren(1389,62777
+ def configure(1405,63207
+
config/BuildSystem/config/setCompilers.py,4407
setCompilers.py:^?setCompilers.py^A,1
def noCheck(11,263
@@ -78297,85 +78376,6 @@
def checkMmap(179,7409
def configure(185,7782
-config/BuildSystem/config/framework.py,2472
-framework.py:^?framework.py^A,1
-class Framework(57,2461
- def __init__(59,2634
- def __getstate__(106,4356
- def __setstate__(114,4620
- def listDirs(121,4836
- def getTmpDir(140,5457
- def setTmpDir(146,5775
- def getFileCreatePause(157,6142
- def setFileCreatePause(161,6307
- def setupHelp(165,6543
- def getCleanup(184,8124
- def setCleanup(189,8253
- def setupArguments(194,8422
- def outputBasics(205,9596
- def logPrintFilesInPath(210,9760
- def dumpConfFiles(226,10470
- def saveHash(260,12076
- def cleanup(272,12603
- def printSummary(277,12693
- def addChild(289,13268
- def getChild(294,13398
- def createChildren(326,14634
- def require(341,15104
- def requireModule(348,15432
- def loadFramework(356,15713
- def addPackageDependency(369,16086
- def updatePackageDependencies(392,16906
- def updateDependencies(409,17740
- def setConfigureParent(414,17863
- def filterPreprocessOutput(421,18025
- def filterCompileOutput(456,19923
- def filterLinkOutput(513,23417
- def addSubstitutionFile(582,27540
- def getPrefix(603,28230
- def getHeaderPrefix(612,28472
- def getSubstitutionPrefix(620,28732
- def substituteName(628,28988
- def substituteFile(657,30018
- def substitute(672,30621
- def dumpSubstitutions(678,30777
- def storeSubstitutions(699,31578
- def outputDefine(715,32490
- def outputPoison(730,33326
- def outputMakeMacro(736,33765
- def outputMakeRule(740,33862
- def outputMakeRules(750,34111
- def outputMakeMacros(760,34545
- def getFullDefineName(772,35021
- def processDefines(777,35207
- def outputDefines(792,35963
- def outputPoisons(799,36221
- def outputPkgVersion(803,36348
- def outputTypedefs(837,38494
- def outputPrototypes(848,38914
- def outputMakeMacroHeader(857,39369
- def outputMakeRuleHeader(882,40320
- def processPackageListDefine(901,40893
- def outputHeader(907,41125
- def outputPkgHeader(955,42981
- def outputCHeader(982,43874
- def getOptionsString(1022,45242
- def outputBanner(1033,45637
- def configureExternalPackagesDir(1045,46154
- def addBatchSetup(1053,46442
- def addBatchInclude(1060,46636
- def addBatchLib(1067,46858
- def addBatchBody(1074,47052
- def addBatchCleanup(1081,47282
- def configureBatch(1088,47489
- def parallelQueueEvaluation(1157,51129
- def processChildren(1171,51669
- def serialEvaluation(1285,56941
- def findModule(1288,56999
- def checkChildCxxDialectBounds(1298,57440
- def processChildren(1387,62582
- def configure(1403,63012
-
config/BuildSystem/config/compilersFortran.py,871
compilersFortran.py:^?compilersFortran.py^A,1
def remove_xcode_verbose(7,55
@@ -78761,6 +78761,13 @@
def testLogName(46,1147
def testFullDefaultConfigure(53,1400
+config/BuildSystem/config/packages/pARMS.py,97
+pARMS.py:^?pARMS.py^A,1
+class Configure(3,23
+ def __init__(4,64
+ def setupDependencies(16,610
+ def Install(24,997
+
config/BuildSystem/config/packages/slepc.py,163
slepc.py:^?slepc.py^A,1
class Configure(3,23
@@ -79645,13 +79652,6 @@
def setupDependencies(11,296
def getSearchDirectories(17,512
-config/BuildSystem/config/packages/pARMS.py,97
-pARMS.py:^?pARMS.py^A,1
-class Configure(3,23
- def __init__(4,64
- def setupDependencies(16,609
- def Install(24,996
-
config/BuildSystem/config/packages/opencl.py,43
opencl.py:^?opencl.py^A,1
class Configure(4,34
@@ -80235,9 +80235,6 @@
config/examples/arch-ci-linux-gcov.py,0
arch-ci-linux-gcov.py:^?arch-ci-linux-gcov.py^A,1
-config/examples/arch-ci-linux-hip-double.py,0
-arch-ci-linux-hip-double.py:^?arch-ci-linux-hip-double.py^A,1
-
config/examples/arch-ci-linux-intel-mkl-single.py,0
arch-ci-linux-intel-mkl-single.py:^?arch-ci-linux-intel-mkl-single.py^A,1
@@ -80340,6 +80337,9 @@
config/examples/arch-nersc-perlmutter-opt.py,0
arch-nersc-perlmutter-opt.py:^?arch-nersc-perlmutter-opt.py^A,1
+config/examples/arch-ci-linux-hip-double.py,0
+arch-ci-linux-hip-double.py:^?arch-ci-linux-hip-double.py^A,1
+
config/example_template.py,0
example_template.py:^?example_template.py^A,1
-------------- next part --------------
diff -Nru --exclude '*doc*' petsc4py-3.18.4/debian/changelog petsc4py-3.18.5/debian/changelog
--- petsc4py-3.18.4/debian/changelog 2023-02-06 11:45:00.000000000 +0100
+++ petsc4py-3.18.5/debian/changelog 2023-03-06 11:15:53.000000000 +0100
@@ -1,3 +1,9 @@
+petsc4py (3.18.5-1) unstable; urgency=medium
+
+ * New upstream release.
+
+ -- Drew Parsons <dparsons at debian.org> Mon, 06 Mar 2023 11:15:53 +0100
+
petsc4py (3.18.4-1) unstable; urgency=medium
* New upstream release.
diff -Nru --exclude '*doc*' petsc4py-3.18.4/petsc4py.egg-info/PKG-INFO petsc4py-3.18.5/petsc4py.egg-info/PKG-INFO
--- petsc4py-3.18.4/petsc4py.egg-info/PKG-INFO 2023-01-31 07:03:58.000000000 +0100
+++ petsc4py-3.18.5/petsc4py.egg-info/PKG-INFO 2023-02-27 23:31:15.000000000 +0100
@@ -1,9 +1,9 @@
Metadata-Version: 2.1
Name: petsc4py
-Version: 3.18.4
+Version: 3.18.5
Summary: PETSc for Python
Home-page: https://gitlab.com/petsc/petsc
-Download-URL: https://pypi.io/packages/source/p/petsc4py/petsc4py-3.18.4.tar.gz
+Download-URL: https://pypi.io/packages/source/p/petsc4py/petsc4py-3.18.5.tar.gz
Author: Lisandro Dalcin
Author-email: dalcinl at gmail.com
Maintainer: Lisandro Dalcin
diff -Nru --exclude '*doc*' petsc4py-3.18.4/PKG-INFO petsc4py-3.18.5/PKG-INFO
--- petsc4py-3.18.4/PKG-INFO 2023-01-31 07:03:59.333307700 +0100
+++ petsc4py-3.18.5/PKG-INFO 2023-02-27 23:31:15.745930400 +0100
@@ -1,9 +1,9 @@
Metadata-Version: 2.1
Name: petsc4py
-Version: 3.18.4
+Version: 3.18.5
Summary: PETSc for Python
Home-page: https://gitlab.com/petsc/petsc
-Download-URL: https://pypi.io/packages/source/p/petsc4py/petsc4py-3.18.4.tar.gz
+Download-URL: https://pypi.io/packages/source/p/petsc4py/petsc4py-3.18.5.tar.gz
Author: Lisandro Dalcin
Author-email: dalcinl at gmail.com
Maintainer: Lisandro Dalcin
diff -Nru --exclude '*doc*' petsc4py-3.18.4/src/__init__.py petsc4py-3.18.5/src/__init__.py
--- petsc4py-3.18.4/src/__init__.py 2023-01-31 06:19:48.000000000 +0100
+++ petsc4py-3.18.5/src/__init__.py 2023-02-27 23:11:05.000000000 +0100
@@ -21,7 +21,7 @@
"""
__author__ = 'Lisandro Dalcin'
-__version__ = '3.18.4'
+__version__ = '3.18.5'
__credits__ = 'PETSc Team <petsc-maint at mcs.anl.gov>'
# --------------------------------------------------------------------
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