Bug#1054701: fenics-dolfinx: FTBFS: Could not find a configuration file for package "Catch2" that is compatible with requested version "2".
Lucas Nussbaum
lucas at debian.org
Fri Oct 27 20:11:06 BST 2023
Source: fenics-dolfinx
Version: 1:0.6.0-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20231027 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> make[3]: Nothing to be done for 'preinstall'.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> Install the project...
> /usr/bin/cmake -P cmake_install.cmake
> -- Install configuration: "RelWithDebInfo"
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6.0.13
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6gcc13
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/defines.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/dolfin_common.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/dolfin_doc.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/log.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/sort.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/math.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/MPI.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Table.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Timer.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/timing.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Form.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Function.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/dolfin_fem.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/dolfin_geometry.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/dolfin_graph.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/partition.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/dolfin_io.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/cells.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_meshtags.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_read.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/dolfin_la.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/Vector.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/petsc.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/slepc.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/dolfin_mesh.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/nls/dolfin_nls.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/dolfin_refinement.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/version.h
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.py
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/main.cpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes/main.cpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes/CMakeLists.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.py
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/main.cpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/CMakeLists.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/poisson.py
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/main.cpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/CMakeLists.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/CMakeLists.txt
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/main.cpp
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/CMakeLists.txt
> ----------------------------------------------------------------------------
> DOLFINx has now been installed in
>
> /usr
>
> and demo programs have been installed in
>
> /usr/share/dolfinx/demo
>
> Don't forget to update your environment variables. This can be done
> easily using the helper file 'dolfinx.conf' which sets the appropriate
> variables (for users of the Bash shell).
>
> To update your environment variables, run the following command:
>
> source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf
>
> ----------------------------------------------------------------------------
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> dh_numpy3 -a
> for build in complex; do \
> for v in python3.11; do \
> cd python; \
> PATH=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/bin:$PATH \
> PETSC_DIR=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-${build} \
> CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-${build}/usr/include" \
> VERBOSE=1 \
> $v setup.py build --build-base=build-${build} install --root=/<<PKGBUILDDIR>>/debian/tmp-${build} --install-layout=deb; \
> cd ..; \
> done; \
> done
> /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
> !!
>
> ********************************************************************************
> Requirements should be satisfied by a PEP 517 installer.
> If you are using pip, you can try `pip install --use-pep517`.
> ********************************************************************************
>
> !!
> dist.fetch_build_eggs(dist.setup_requires)
> running build
> running build_py
> creating build-complex
> creating build-complex/lib.linux-x86_64-cpython-311
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/graph.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/pkgconfig.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/__init__.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/geometry.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/la.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/plot.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/common.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/log.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/mesh.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/jit.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/function.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/assemble.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/__init__.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/petsc.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/dofmap.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/bcs.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/forms.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/utils.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/__init__.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/gmshio.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/nls/__init__.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/nls/petsc.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/__init__.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/py.typed -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/fem/py.typed -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/nls/py.typed -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/wrappers/caster_petsc.h -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/MPICommWrapper.h -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/array.h -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/caster_mpi.h -> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> running build_ext
> Re-run cmake no build system arguments
> -- The C compiler identification is GNU 13.2.0
> -- The CXX compiler identification is GNU 13.2.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found Python3: /usr/bin/python3.11 (found version "3.11.6") found components: Interpreter Development.Module
> -- Performing Test HAS_FLTO
> -- Performing Test HAS_FLTO - Success
> -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.11.1")
> -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1")
> -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1")
> -- Found MPI: TRUE (found version "3.1")
> -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0
> -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem
> -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0
> -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0
> -- [x] libboost_timer.so.1.74.0
> -- [ ] libboost_timer.a
> -- Adding boost_timer dependencies: chrono;headers
> -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0
> -- [x] libboost_chrono.so.1.74.0
> -- [ ] libboost_chrono.a
> -- Adding boost_chrono dependencies: headers
> -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0
> -- [x] libboost_filesystem.so.1.74.0
> -- [ ] libboost_filesystem.a
> -- Adding boost_filesystem dependencies: headers
> -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem
> -- Found Python3: /usr/bin/python3.11 (found version "3.11.6") found components: Interpreter
> -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints
> -- HDF5: Using hdf5 compiler wrapper to determine C configuration
> -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C
> -- HDF5_DIR: HDF5_DIR-NOTFOUND
> -- HDF5_DEFINITIONS:
> -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_HL_LIBRARIES:
> -- HDF5_C_DEFINITIONS:
> -- HDF5_C_INCLUDE_DIR:
> -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_C_LIBRARY:
> -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_C_HL_LIBRARY:
> -- HDF5_C_HL_LIBRARIES:
> -- Defined targets (if any):
> -- ... hdf5::hdf5
> -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
> -- Checking for one of the modules 'PETSc;petsc'
> -- Checking for one of the modules 'SLEPc;slepc'
> -- Performing Test HAVE_PEDANTIC
> -- Performing Test HAVE_PEDANTIC - Success
> -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include
> -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include
> -- Configuring done (7.8s)
> -- Generating done (0.0s)
> CMake Warning:
> Manually-specified variables were not used by the project:
>
> Python3_LIBRARIES
>
>
> -- Build files have been written to: /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311
> Change Dir: '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
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> Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j3
> gmake[2]: Entering directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> /usr/bin/cmake -S/<<PKGBUILDDIR>>/python -B/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311 --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311//CMakeFiles/progress.marks
> /usr/bin/gmake -f CMakeFiles/Makefile2 all
> gmake[3]: Entering directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
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> gmake[4]: Entering directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> cd /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/python /<<PKGBUILDDIR>>/python /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311 /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311 /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles/cpp.dir/DependInfo.cmake "--color="
> gmake[4]: Leaving directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
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> gmake[4]: Entering directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> [ 8%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/common.cpp
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> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/fem.cpp
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/dolfinx.cpp
> [ 33%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/geometry.cpp
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> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/graph.cpp
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> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/io.cpp
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> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/la.cpp
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> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c /<<PKGBUILDDIR>>/python/dolfinx/wrappers/nls.cpp
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> [100%] Linking CXX shared module /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1
> /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -flto -Wl,-z,relro -shared -o /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6.0.13 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.6.0.13 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/libpetsc_complex.so
> lto-wrapper: warning: using serial compilation of 60 LTRANS jobs
> lto-wrapper: note: see the ‘-flto’ option documentation for more information
> /usr/bin/strip /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> gmake[4]: Leaving directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> [100%] Built target cpp
> gmake[3]: Leaving directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles 0
> gmake[2]: Leaving directory '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
>
> running install
> /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
> !!
>
> ********************************************************************************
> Please avoid running ``setup.py`` directly.
> Instead, use pypa/build, pypa/installer or other
> standards-based tools.
>
> See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
> ********************************************************************************
>
> !!
> self.initialize_options()
> running install_lib
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/graph.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/petsc.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/py.typed -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/pkgconfig.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/caster_petsc.h -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/MPICommWrapper.h -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/array.h -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/caster_mpi.h -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/geometry.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/la.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/plot.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/utils.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/gmshio.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/function.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/assemble.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/petsc.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/dofmap.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/bcs.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/py.typed -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/forms.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/common.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/log.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/mesh.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/jit.py -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/py.typed -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/graph.py to graph.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/__init__.py to __init__.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/petsc.py to petsc.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la.py to la.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/utils.py to utils.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/__init__.py to __init__.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/gmshio.py to gmshio.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/petsc.py to petsc.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/bcs.py to bcs.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/forms.py to forms.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-311.pyc
> byte-compiling /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-311.pyc
> running install_egg_info
> running egg_info
> writing fenics_dolfinx.egg-info/PKG-INFO
> writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt
> writing requirements to fenics_dolfinx.egg-info/requires.txt
> writing top-level names to fenics_dolfinx.egg-info/top_level.txt
> reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt'
> writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt'
> Copying fenics_dolfinx.egg-info to /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/fenics_dolfinx-0.6.0.13.egg-info
> Skipping SOURCES.txt
> running install_scripts
> chrpath -d /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so
> sed -i "s/-D_FORTIFY_SOURCE=2//g" /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc
> sed -i "s|-DNDEBUG||g" /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc
> if [ "x" != "xno" ]; then \
> case " mips64el hurd-i386 m68k sh4 " in \
> *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \
> *) set -e; \
> export CTEST_OUTPUT_ON_FAILURE=1; \
> for build in real complex; do \
> echo "== testing $build number build =="; \
> builddir=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-${build}; \
> for mytest in test demo; do \
> echo "running tests from $mytest for $build build"; \
> testdir=${builddir}/${mytest}; \
> cd $testdir; \
> if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >> CTestCustom.cmake; fi; \
> PETSC_DIR=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \
> -DDOLFINX_DIR=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \
> -DMPIEXEC_PARAMS:STRING="--oversubscribe" \
> ${testdir} ; \
> make all VERBOSE=1; \
> OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \
> done; \
> cd /<<PKGBUILDDIR>>; \
> done; \
> esac; \
> fi
> == testing real number build ==
> running tests from test for real build
> -- The C compiler identification is GNU 13.2.0
> -- The CXX compiler identification is GNU 13.2.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1")
> -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1")
> -- Found MPI: TRUE (found version "3.1")
> -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0
> -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem
> -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0
> -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0
> -- [x] libboost_timer.so.1.74.0
> -- [ ] libboost_timer.a
> -- Adding boost_timer dependencies: chrono;headers
> -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0
> -- [x] libboost_chrono.so.1.74.0
> -- [ ] libboost_chrono.a
> -- Adding boost_chrono dependencies: headers
> -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0
> -- [x] libboost_filesystem.so.1.74.0
> -- [ ] libboost_filesystem.a
> -- Adding boost_filesystem dependencies: headers
> -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem
> -- Found Python3: /usr/bin/python3 (found version "3.11.6") found components: Interpreter
> -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints
> -- HDF5: Using hdf5 compiler wrapper to determine C configuration
> -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C
> -- HDF5_DIR: HDF5_DIR-NOTFOUND
> -- HDF5_DEFINITIONS:
> -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_HL_LIBRARIES:
> -- HDF5_C_DEFINITIONS:
> -- HDF5_C_INCLUDE_DIR:
> -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_C_LIBRARY:
> -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_C_HL_LIBRARY:
> -- HDF5_C_HL_LIBRARIES:
> -- Defined targets (if any):
> -- ... hdf5::hdf5
> -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
> -- Checking for one of the modules 'PETSc;petsc'
> -- Looking for PETSC_USE_COMPLEX
> -- Looking for PETSC_USE_COMPLEX - not found
> -- Checking for one of the modules 'SLEPc;slepc'
> CMake Warning at CMakeLists.txt:35 (find_package):
> Could not find a configuration file for package "Catch2" that is compatible
> with requested version "2".
>
> The following configuration files were considered but not accepted:
>
> /usr/lib/cmake/Catch2/Catch2Config.cmake, version: 3.4.0
>
>
>
> -- Catch2 not found. Downloading.
> CMake Error at /usr/share/cmake-3.27/Modules/ExternalProject.cmake:2851 (message):
> error: could not find git for clone of catch2-populate
> Call Stack (most recent call first):
> /usr/share/cmake-3.27/Modules/ExternalProject.cmake:4345 (_ep_add_download_command)
> CMakeLists.txt:29 (ExternalProject_Add)
>
>
> -- Configuring incomplete, errors occurred!
>
> CMake Error at /usr/share/cmake-3.27/Modules/FetchContent.cmake:1650 (message):
> CMake step for catch2 failed: 1
> Call Stack (most recent call first):
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:1802:EVAL:2 (__FetchContent_directPopulate)
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:1802 (cmake_language)
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:2016 (FetchContent_Populate)
> CMakeLists.txt:44 (FetchContent_MakeAvailable)
>
>
> -- Configuring incomplete, errors occurred!
> make[1]: *** [debian/rules:188: override_dh_auto_install-arch] Error 1
The full build log is available from:
http://qa-logs.debian.net/2023/10/27/fenics-dolfinx_0.6.0-8_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231027;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231027&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
More information about the debian-science-maintainers
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