Bug#1069456: mumps: FTBFS on armhf: tests fail
Lucas Nussbaum
lucas at debian.org
Sat Apr 20 13:59:38 BST 2024
Source: mumps
Version: 5.6.2-2.1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-armhf
Hi,
During a rebuild of all packages in sid, your package failed to build
on armhf.
Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>/examples'
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c csimpletest.F -o csimpletest.o
> mpifort -o csimpletest -Wl,-z,relro csimpletest.o -L/<<PKGBUILDDIR>>/lib -lcmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c csimpletest_save_restore.F -o csimpletest_save_restore.o
> mpifort -o csimpletest_save_restore -Wl,-z,relro csimpletest_save_restore.o -L/<<PKGBUILDDIR>>/lib -lcmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c zsimpletest.F -o zsimpletest.o
> mpifort -o zsimpletest -Wl,-z,relro zsimpletest.o -L/<<PKGBUILDDIR>>/lib -lzmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c zsimpletest_save_restore.F -o zsimpletest_save_restore.o
> mpifort -o zsimpletest_save_restore -Wl,-z,relro zsimpletest_save_restore.o -L/<<PKGBUILDDIR>>/lib -lzmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c ssimpletest.F -o ssimpletest.o
> mpifort -o ssimpletest -Wl,-z,relro ssimpletest.o -L/<<PKGBUILDDIR>>/lib -lsmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c ssimpletest_save_restore.F -o ssimpletest_save_restore.o
> mpifort -o ssimpletest_save_restore -Wl,-z,relro ssimpletest_save_restore.o -L/<<PKGBUILDDIR>>/lib -lsmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c dsimpletest.F -o dsimpletest.o
> mpifort -o dsimpletest -Wl,-z,relro dsimpletest.o -L/<<PKGBUILDDIR>>/lib -ldmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c dsimpletest_save_restore.F -o dsimpletest_save_restore.o
> mpifort -o dsimpletest_save_restore -Wl,-z,relro dsimpletest_save_restore.o -L/<<PKGBUILDDIR>>/lib -ldmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DAdd_ -I. -I../include -I../src -c c_example_save_restore.c -o c_example_save_restore.o
> mpifort -o c_example_save_restore -Wl,-z,relro c_example_save_restore.o -L/<<PKGBUILDDIR>>/lib -ldmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DAdd_ -I. -I../include -I../src -c c_example.c -o c_example.o
> mpifort -o c_example -Wl,-z,relro c_example.o -L/<<PKGBUILDDIR>>/lib -ldmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lmpi -lblas -lpthread
> mpifort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>/examples=. -fstack-protector-strong -fstack-clash-protection -Dintel_ -I. -I../include -I../src -c multiple_arithmetics_example.F -o multiple_arithmetics_example.o
> mpifort -o multiple_arithmetics_example -Wl,-z,relro multiple_arithmetics_example.o -L/<<PKGBUILDDIR>>/lib -lsmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -ldmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lcmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lzmumps -lmumps_common -L/<<PKGBUILDDIR>>/lib -lpord -lscalapack-openmpi -llapack -lblas -lpthread
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/examples'
>
> === running c_example (serial) ===
> --------------------------------------------------------------------------
> Sorry! You were supposed to get help about:
> pmix_init:startup:internal-failure
> But I couldn't open the help file:
> /usr/share/pmix/help-pmix-runtime.txt: No such file or directory. Sorry!
> --------------------------------------------------------------------------
> [ip-10-84-234-181:4022699] PMIX ERROR: NOT-FOUND in file ../../../../../../../../opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c at line 237
> [ip-10-84-234-181:4022698] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716
> [ip-10-84-234-181:4022698] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172
> --------------------------------------------------------------------------
> It looks like orte_init failed for some reason; your parallel process is
> likely to abort. There are many reasons that a parallel process can
> fail during orte_init; some of which are due to configuration or
> environment problems. This failure appears to be an internal failure;
> here's some additional information (which may only be relevant to an
> Open MPI developer):
>
> orte_ess_init failed
> --> Returned value Unable to start a daemon on the local node (-127) instead of ORTE_SUCCESS
> --------------------------------------------------------------------------
> --------------------------------------------------------------------------
> It looks like MPI_INIT failed for some reason; your parallel process is
> likely to abort. There are many reasons that a parallel process can
> fail during MPI_INIT; some of which are due to configuration or environment
> problems. This failure appears to be an internal failure; here's some
> additional information (which may only be relevant to an Open MPI
> developer):
>
> ompi_mpi_init: ompi_rte_init failed
> --> Returned "Unable to start a daemon on the local node" (-127) instead of "Success" (0)
> --------------------------------------------------------------------------
> *** An error occurred in MPI_Init
> *** on a NULL communicator
> *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
> *** and potentially your MPI job)
> [ip-10-84-234-181:4022698] Local abort before MPI_INIT completed completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
> make[1]: *** [debian/rules:119: override_dh_auto_test-arch] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/04/20/mumps_5.6.2-2.1_unstable-armhf.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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