Bug#1080198: h5py: autopkgtest regressions with mpich as default provider on 32 bit architectures

[Graham Inggs]

Source: h5py
Version: 3.11.0-5
Severity: serious
User: debian-ci at lists.debian.org
Usertags: regression

Hi Maintainer

Since the upload of mpi-defaults 1.17, the autopkgtests of h5py have
regressed on 32-bit architectures [1]:  I've copied what I hope is the
relevant part of the log below.

Regards
Graham


[1] https://ci.debian.net/packages/h/h5py/testing/armhf/


158s system msg for write_line failure : Bad file descriptor
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=abort exitcode=-1
message=PMI_Init failed
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=get_appnum
158s :
158s system msg for write_line failure : Bad file descriptor
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff82d538) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=abort
exitcode=404350991 message=Fatal error in internal_Init_thread: Other
MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff82d538) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s :
158s system msg for write_line failure : Bad file descriptor
158s cmd=init pmi_version=1 pmi_subversion=1
158s cmd=abort exitcode=-1 message=PMI_Init failed
158s cmd=get_appnum
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xfffca0a8) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s cmd=abort exitcode=739895311 message=Fatal error in
internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xfffca0a8) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=init pmi_version=1
pmi_subversion=1
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=abort exitcode=-1
message=PMI_Init failed
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=get_appnum
158s :
158s system msg for write_line failure : Bad file descriptor
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xffee5d38) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=abort
exitcode=404350991 message=Fatal error in internal_Init_thread: Other
MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xffee5d38) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s :
158s system msg for write_line failure : Bad file descriptor
158s PASSED [ 75%]
158s tests/test_ros3.py::test_ros3_temp_token SKIPPED (AWS S3 access
toke...) [100%]Fatal error in internal_Init_thread: Other MPI error,
error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff8e4e68) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s autopkgtest [12:30:09]: test python3-mpi-network: -----------------------]