Bug#1090900: fenics-dolfinx: autopkgtest regressions with HDF5 1.14

Drew Parsons dparsons at debian.org
Sun Dec 22 22:32:27 GMT 2024


Source: fenics-dolfinx
Followup-For: Bug #1090900

160s Warning! ***HDF5 library version mismatched error***
160s The HDF5 header files used to compile this application do not match
160s the version used by the HDF5 library to which this application is linked.
160s Data corruption or segmentation faults may occur if the application continues.

This error comes from HDF, in H5.c, not dolfinx.
https://salsa.debian.org/debian/hdf5/-/blob/master/src/H5.c#L847
https://salsa.debian.org/debian/hdf5/-/blob/master/src/H5.c#L913

dolfinx in testing was built against old HDF5 1.10,
so we would expect it to be incompatible with the new HDF5 1.14.

The HDF5 migration tests need to use the binNMU dolfinx rebuilt
against the new HDF5.



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