Bug#1060807: zfp: please compile zfp with -DBIT_STREAM_WORD_TYPE=uint8

Picca Frédéric-Emmanuel picca at debian.org
Sun Jan 14 17:53:02 GMT 2024


Source: zfp
Severity: important

Dear Maintainer,

since the upload of zfp 1.0.1, the test of hdf5plugin are failing

look at here

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059842

It seems to me that the zfp library should be recompile with the previous flag.

thanks

Frederic.


PS: Il also recompiled locally h5z-zfp and now the unit test is also failling with these errors

H5Dcreate failed at line 405, errno=2 (No such file or directory)
 [ESC[31;01mFAILEDESC[0m]
./test_write_plugin zfpmode=2 prec=16 .......................HDF5-DIAG: Error detected in HDF5 (1.10.10) thread 1:
  #000: ../../../src/H5D.c line 140 in H5Dcreate2(): unable to create dataset
    major: Dataset
    minor: Unable to initialize object
  #001: ../../../src/H5Dint.c line 328 in H5D__create_named(): unable to create and link to dataset
    major: Dataset
    minor: Unable to initialize object
  #002: ../../../src/H5L.c line 1542 in H5L_link_object(): unable to create new link to object
    major: Links
    minor: Unable to initialize object
  #003: ../../../src/H5L.c line 1785 in H5L__create_real(): can't insert link
    major: Links
    minor: Unable to insert object
  #004: ../../../src/H5Gtraverse.c line 830 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #005: ../../../src/H5Gtraverse.c line 607 in H5G__traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #006: ../../../src/H5L.c line 1590 in H5L__link_cb(): unable to create object
    major: Links
    minor: Unable to initialize object
  #007: ../../../src/H5Oint.c line 2459 in H5O_obj_create(): unable to open object
    major: Object header
    minor: Can't open object
  #008: ../../../src/H5Doh.c line 287 in H5O__dset_create(): unable to create dataset
    major: Dataset
    minor: Unable to initialize object
  #009: ../../../src/H5Dint.c line 1196 in H5D__create(): I/O filters can't operate on this dataset
    major: Invalid arguments to routine
    minor: Unable to initialize object
  #010: ../../../src/H5Z.c line 891 in H5Z_can_apply(): unable to apply filter
    major: Data filters
    minor: Error from filter 'can apply' callback
  #011: ../../../src/H5Z.c line 852 in H5Z__prepare_prelude_callback_dcpl(): unable to apply filter
    major: Data filters
    minor: Error from filter 'can apply' callback
  #012: ../../../src/H5Z.c line 753 in H5Z__prelude_callback(): error during user callback
    major: Data filters
    minor: Error from filter 'can apply' callback
  #013: H5Zzfp.c line 158 in H5Z_zfp_can_apply(): ZFP lib not compiled with -DBIT_STREAM_WORD_TYPE=uint8
    major: Data filters
    minor: Unable to initialize object
H5Dcreate failed at line 405, errno=2 (No such file or directory)
 [ESC[31;01mFAILEDESC[0m]



-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.9-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled



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