Bug#1086087: FTBFS with arch: all on arm64: Imported target "MPI::MPI_Fortran" includes non-existent path "/usr/lib/x86_64-linux-gnu/fortran/gfortran-mod-15/openmpi"
Stefano Rivera
stefanor at debian.org
Sat Oct 26 18:28:36 BST 2024
Source: adios2
Version: 2.10.1+dfsg1-12
Severity: normal
Tags: ftbfs
Justification: FTBFS
Dear maintainer,
During a test rebuild, adios2 failed to rebuild.
I suspect this was due to test-building on arm64, for a source package
that's assuming arch-independent bits are on x86-64. It would be
convenient for test rebuilds if this wasn't assumed.
Build log snippet:
debian/rules override_dh_ctest_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_ctest_configure -O--ctest-testing-dir=build-serial --builddirectory=build-serial -O--ctest-build-suffix=-serial -O--buildsystem=cmake+ninja -- -DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -DADIOS2_USE_EXTERNAL_ENET:BOOL=ON -DADIOS2_USE_BZip2:BOOL=ON -DADIOS2_USE_Blosc:BOOL=ON -DADIOS2_USE_Fortran:BOOL=ON -DADIOS2_USE_HDF5:BOOL=ON -DADIOS2_USE_PNG:BOOL=ON -DADIOS2_USE_SST:BOOL=ON -DADIOS2_USE_ZeroMQ:BOOL=ON -DADIOS2_USE_Python:BOOL=ON -DADIOS2_Python_Version="3.12" -DEVPATH_TRANSPORT_MODULES=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/serial -DADIOS2_LIBRARY_FLAVOR:STRING=serial -DADIOS2_LIBRARY_SUFFIX:STRING=_serial -DADIOS2_EXECUTABLE_SUFFIX:STRING=.serial -DADIOS2_USE_MPI:BOOL=OFF -DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
cd build-serial && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON -GNinja -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -DADIOS2_USE_EXTERNAL_ENET:BOOL=ON -DADIOS2_USE_BZip2:BOOL=ON -DADIOS2_USE_Blosc:BOOL=ON -DADIOS2_USE_Fortran:BOOL=ON -DADIOS2_USE_HDF5:BOOL=ON -DADIOS2_USE_PNG:BOOL=ON -DADIOS2_USE_SST:BOOL=ON -DADIOS2_USE_ZeroMQ:BOOL=ON -DADIOS2_USE_Python:BOOL=ON -DADIOS2_Python_Version=3.12 -DEVPATH_TRANSPORT_MODULES=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/serial -DADIOS2_LIBRARY_FLAVOR:STRING=serial -DADIOS2_LIBRARY_SUFFIX:STRING=_serial -DADIOS2_EXECUTABLE_SUFFIX:STRING=.serial -DADIOS2_USE_MPI:BOOL=OFF -DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Could NOT find ZFP (missing: ZFP_DIR)
-- Could NOT find SZ (missing: SZ_LIBRARY SZ_INCLUDE_DIR)
-- Could NOT find mgard (missing: mgard_DIR)
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
-- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found suitable version "1.6.44", minimum required is "1.6.0")
-- The Fortran compiler identification is GNU 14.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Performing Test ADIOS2_HAVE_FORTRAN_F03_ARGS
-- Performing Test ADIOS2_HAVE_FORTRAN_F03_ARGS - Success
-- Performing Test ADIOS2_HAVE_FORTRAN_GNU_ARGS
-- Performing Test ADIOS2_HAVE_FORTRAN_GNU_ARGS - Success
-- Found ZeroMQ: /usr/lib/aarch64-linux-gnu/libzmq.so (found suitable version "4.3.5", minimum required is "4.1")
-- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.10") found components: C
-- Could NOT find IME (missing: IME_LIBRARY IME_INCLUDE_DIR)
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for module 'libfabric'
-- Found libfabric, version 1.17.0
-- Found LIBFABRIC: /usr/lib/aarch64-linux-gnu/libfabric.so (Required is at least version "1.6")
-- Checking for module 'cray-drc'
-- Package 'cray-drc', required by 'virtual:world', not found
-- Could NOT find CrayDRC (missing: CrayDRC_LIBRARIES)
-- Libfabric support for the HPE CXI provider: FALSE
-- Checking for module 'ucx'
-- Found ucx, version 1.17.0
-- Found UCX: /usr/lib/aarch64-linux-gnu/libucp.so;/usr/lib/aarch64-linux-gnu/libuct.so;/usr/lib/aarch64-linux-gnu/libucs.so;/usr/lib/aarch64-linux-gnu/libucm.so (found suitable version "1.17.0", minimum required is "1.9.0")
-- Could NOT find DAOS (missing: DAOS_LIBRARY DFS_LIBRARY DAOS_INCLUDE_DIR)
-- Looking for shmget
-- Looking for shmget - found
-- Found Sodium: /usr/lib/aarch64-linux-gnu/libsodium.so
-- Could NOT find SQLite3 (missing: SQLite3_INCLUDE_DIR SQLite3_LIBRARY)
-- Performing Test ADIOS2_USE_Fortran_flag_argument_mismatch
-- Performing Test ADIOS2_USE_Fortran_flag_argument_mismatch - Success
-- Found Python: /usr/bin/python3 (found suitable version "3.12.7", minimum required is "3") found components: Interpreter Development NumPy Development.Module Development.Embed
-- Checking for O_DIRECT
-- Performing Test O_DIRECT_WORKS
-- Performing Test O_DIRECT_WORKS - Success
-- ADIOS2 ThirdParty: Configuring KWSys
-- Checking whether wstring is available
-- Checking whether wstring is available - yes
-- Checking whether C compiler has ptrdiff_t in stddef.h
-- Checking whether C compiler has ptrdiff_t in stddef.h - yes
-- Checking whether C compiler has ssize_t in unistd.h
-- Checking whether C compiler has ssize_t in unistd.h - yes
-- Checking whether CXX compiler has setenv
-- Checking whether CXX compiler has setenv - yes
-- Checking whether CXX compiler has unsetenv
-- Checking whether CXX compiler has unsetenv - yes
-- Checking whether CXX compiler has environ in stdlib.h
-- Checking whether CXX compiler has environ in stdlib.h - no
-- Checking whether CXX compiler has utimes
-- Checking whether CXX compiler has utimes - yes
-- Checking whether CXX compiler has utimensat
-- Checking whether CXX compiler has utimensat - yes
-- Checking whether CXX compiler struct stat has st_mtim member
-- Checking whether CXX compiler struct stat has st_mtim member - yes
-- Checking whether CXX compiler struct stat has st_mtimespec member
-- Checking whether CXX compiler struct stat has st_mtimespec member - no
-- Checking whether <ext/stdio_filebuf.h> is available
-- Checking whether <ext/stdio_filebuf.h> is available - yes
-- ADIOS2 ThirdParty: Configuring perfstubs
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- Found pugixml: /usr/lib/aarch64-linux-gnu/cmake/pugixml/pugixml-config.cmake (found suitable version "1.14", minimum required is "1.10")
-- ADIOS2 ThirdParty: Configuring nlohmann_json
-- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3")
-- ADIOS2 ThirdParty: Configuring atl
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of double
-- Check size of double - done
-- Check size of float
-- Check size of float - done
-- Check size of int
-- Check size of int - done
-- Check size of short
-- Check size of short - done
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file stdlib.h
-- Looking for include file stdlib.h - found
-- Looking for include file string.h
-- Looking for include file string.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file windows.h
-- Looking for include file windows.h - not found
-- Looking for fork
-- Looking for fork - found
-- Found atl: /<<PKGBUILDDIR>>/build-serial/thirdparty/atl/atl/atl-config.cmake (found version "2.2.1")
-- ADIOS2 ThirdParty: Configuring dill
-- Check size of void*
-- Check size of void* - done
-- Check size of long
-- Check size of long - done
-- Disabling emulation
-- Found Perl: /usr/bin/perl (found version "5.40.0")
-- base.ops argument is
-- Looking for include file stdarg.h
-- Looking for include file stdarg.h - found
-- Looking for include file memory.h
-- Looking for include file memory.h - found
-- Looking for include file sys/mman.h
-- Looking for include file sys/mman.h - found
-- Looking for __clear_cache
-- Looking for __clear_cache - not found
-- Found dill: /<<PKGBUILDDIR>>/build-serial/thirdparty/dill/dill/dill-config.cmake (found version "3.0.0")
-- ADIOS2 ThirdParty: Configuring ffs
-- Check size of off_t
-- Check size of off_t - done
-- Check size of long double
-- Check size of long double - done
-- Check size of long long
-- Check size of long long - done
-- Check size of size_t
-- Check size of size_t - done
-- Looking for socket
-- Looking for socket - found
-- Could NOT find BISON (missing: BISON_EXECUTABLE)
-- Could NOT find FLEX (missing: FLEX_EXECUTABLE)
-- Found dill: /<<PKGBUILDDIR>>/build-serial/thirdparty/dill/dill/dill-config.cmake (found suitable version "3.0.0", minimum required is "3.0.0")
-- Found atl: /<<PKGBUILDDIR>>/build-serial/thirdparty/atl/atl/atl-config.cmake (found suitable version "2.2.1", minimum required is "2.2.1")
-- Looking for netdb.h
-- Looking for netdb.h - found
-- Looking for netinet/in.h
-- Looking for netinet/in.h - found
-- Looking for sockLib.h
-- Looking for sockLib.h - not found
-- Looking for sys/select.h
-- Looking for sys/select.h - found
-- Looking for sys/socket.h
-- Looking for sys/socket.h - found
-- Looking for sys/times.h
-- Looking for sys/times.h - found
-- Looking for sys/uio.h
-- Looking for sys/uio.h - found
-- Looking for sys/un.h
-- Looking for sys/un.h - found
-- Looking for winsock.h
-- Looking for winsock.h - not found
-- Looking for strtof
-- Looking for strtof - found
-- Looking for strtod
-- Looking for strtod - found
-- Looking for strtold
-- Looking for strtold - found
-- Looking for getdomainname
-- Looking for getdomainname - found
-- Check size of struct iovec
-- Check size of struct iovec - done
-- Performing Test HAS_IOV_BASE_IOVEC
-- Performing Test HAS_IOV_BASE_IOVEC - Success
-- Found atl: /<<PKGBUILDDIR>>/build-serial/thirdparty/atl/atl/atl-config.cmake (found version "2.2.1")
-- Found ffs: /<<PKGBUILDDIR>>/build-serial/thirdparty/ffs/ffs/ffs-config.cmake (found version "3.0.0")
-- Checking for module 'libenet'
-- Found libenet, version 1.3.18
-- ADIOS2 ThirdParty: Configuring EVPath
-- Performing Test HAVE_MATH
-- Performing Test HAVE_MATH - Failed
-- Performing Test HAVE_LIBM_MATH
-- Performing Test HAVE_LIBM_MATH - Success
-- Found atl: /<<PKGBUILDDIR>>/build-serial/thirdparty/atl/atl/atl-config.cmake (found suitable version "2.2.1", minimum required is "2.2.1")
-- Found ffs: /<<PKGBUILDDIR>>/build-serial/thirdparty/ffs/ffs/ffs-config.cmake (found suitable version "3.0.0", minimum required is "3.0.0")
-- Looking for clock_gettime
-- Looking for clock_gettime - found
-- Looking for sys/epoll.h
-- Looking for sys/epoll.h - found
-- - Enet library was not found. This is not a fatal error, just that the Enet transport will not be built.
-- Looking for hostlib.h
-- Looking for hostlib.h - not found
-- Looking for sys/sockio.h
-- Looking for sys/sockio.h - not found
-- Looking for winsock2.h
-- Looking for winsock2.h - not found
-- Performing Test HAVE_FDS_BITS
-- Performing Test HAVE_FDS_BITS - Failed
-- Looking for writev
-- Looking for writev - found
-- Looking for uname
-- Looking for uname - found
-- Looking for getloadavg
-- Looking for getloadavg - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for getifaddrs
-- Looking for getifaddrs - found
-- Found EVPath: /<<PKGBUILDDIR>>/build-serial/thirdparty/EVPath/EVPath/EVPathConfigCommon.cmake (found version "4.5.0")
-- Looking for rdma/fi_ext_gni.h
-- Looking for rdma/fi_ext_gni.h - not found
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Performing Test ADIOS2_HAVE_FORTRAN_SUBMODULES
-- Performing Test ADIOS2_HAVE_FORTRAN_SUBMODULES - Success
ADIOS2 build configuration:
ADIOS Version: 2.10.1
C++ Compiler : GNU 14.2.0
/usr/bin/c++
Fortran Compiler : GNU 14.2.0
/usr/bin/gfortran
Installation prefix: /usr
bin: bin
lib: lib/aarch64-linux-gnu
include: include
cmake: lib/aarch64-linux-gnu/cmake/adios2/serial
python: lib/python3/dist-packages
Features:
Library Type: shared
Build Type: None
Testing: OFF
Examples: OFF
Build Options:
DataMan : ON
DataSpaces : OFF
HDF5 : ON
HDF5_VOL : OFF
MHS : ON
SST : ON
Fortran : ON
MPI : OFF
Python : ON
PIP : OFF
Blosc2 : OFF
BZip2 : ON
LIBPRESSIO : OFF
MGARD : OFF
MGARD_MDR : OFF
PNG : ON
SZ : OFF
ZFP : OFF
DAOS : OFF
IME : OFF
O_DIRECT : ON
Sodium : ON
Catalyst : OFF
SysVShMem : ON
UCX : ON
ZeroMQ : ON
Profiling : ON
Endian_Reverse : OFF
Derived_Variable : OFF
AWSSDK : OFF
GPU_Support : OFF
CUDA : OFF
Kokkos : OFF
Kokkos_CUDA : OFF
Kokkos_HIP : OFF
Kokkos_SYCL : OFF
Campaign : OFF
Possible RDMA DataPlanes for SST: fabric UCX
-- Configuring done (16.4s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
ADIOS2_USE_Blosc
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/build-serial
dh_ctest_configure -O--ctest-testing-dir=build-mpi --builddirectory=build-mpi -O--ctest-build-suffix=-mpi -O--buildsystem=cmake+ninja -- -DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -DADIOS2_USE_EXTERNAL_ENET:BOOL=ON -DADIOS2_USE_BZip2:BOOL=ON -DADIOS2_USE_Blosc:BOOL=ON -DADIOS2_USE_Fortran:BOOL=ON -DADIOS2_USE_HDF5:BOOL=ON -DADIOS2_USE_PNG:BOOL=ON -DADIOS2_USE_SST:BOOL=ON -DADIOS2_USE_ZeroMQ:BOOL=ON -DADIOS2_USE_Python:BOOL=ON -DADIOS2_Python_Version="3.12" -DEVPATH_TRANSPORT_MODULES=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DADIOS2_USE_MPI:BOOL=ON -DADIOS2_USE_SSC:BOOL=ON -DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/mpi -DADIOS2_LIBRARY_FLAVOR:STRING=mpi -DADIOS2_LIBRARY_SUFFIX:STRING=_mpi -DADIOS2_EXECUTABLE_SUFFIX:STRING=.mpi -DMPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi -DMPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic++.openmpi -DMPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpifort.openmpi -DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi
cd build-mpi && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON -GNinja -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -DADIOS2_USE_EXTERNAL_ENET:BOOL=ON -DADIOS2_USE_BZip2:BOOL=ON -DADIOS2_USE_Blosc:BOOL=ON -DADIOS2_USE_Fortran:BOOL=ON -DADIOS2_USE_HDF5:BOOL=ON -DADIOS2_USE_PNG:BOOL=ON -DADIOS2_USE_SST:BOOL=ON -DADIOS2_USE_ZeroMQ:BOOL=ON -DADIOS2_USE_Python:BOOL=ON -DADIOS2_Python_Version=3.12 -DEVPATH_TRANSPORT_MODULES=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DADIOS2_USE_MPI:BOOL=ON -DADIOS2_USE_SSC:BOOL=ON -DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/mpi -DADIOS2_LIBRARY_FLAVOR:STRING=mpi -DADIOS2_LIBRARY_SUFFIX:STRING=_mpi -DADIOS2_EXECUTABLE_SUFFIX:STRING=.mpi -DMPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi -DMPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic\+\+.openmpi -DMPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpifort.openmpi -DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Could NOT find ZFP (missing: ZFP_DIR)
-- Could NOT find SZ (missing: SZ_LIBRARY SZ_INCLUDE_DIR)
-- Could NOT find mgard (missing: mgard_DIR)
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
-- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found suitable version "1.6.44", minimum required is "1.6.0")
-- The Fortran compiler identification is GNU 14.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Performing Test ADIOS2_HAVE_FORTRAN_F03_ARGS
-- Performing Test ADIOS2_HAVE_FORTRAN_F03_ARGS - Success
-- Performing Test ADIOS2_HAVE_FORTRAN_GNU_ARGS
-- Performing Test ADIOS2_HAVE_FORTRAN_GNU_ARGS - Success
-- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1")
CMake Error in /<<PKGBUILDDIR>>/build-mpi/CMakeFiles/CMakeScratch/TryCompile-kO8S7o/CMakeLists.txt:
Imported target "MPI::MPI_Fortran" includes non-existent path
"/usr/lib/x86_64-linux-gnu/fortran/gfortran-mod-15/openmpi"
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
CMake Error at /usr/share/cmake-3.30/Modules/FindMPI.cmake:1282 (try_compile):
Failed to generate test project build system.
Call Stack (most recent call first):
/usr/share/cmake-3.30/Modules/FindMPI.cmake:1301 (_MPI_try_staged_settings)
/usr/share/cmake-3.30/Modules/FindMPI.cmake:1649 (_MPI_check_lang_works)
cmake/FindMPI.cmake:10 (include)
cmake/DetectOptions.cmake:293 (find_package)
CMakeLists.txt:194 (include)
-- Configuring incomplete, errors occurred!
cd build-mpi && tail -v -n \+0 CMakeCache.txt
==> CMakeCache.txt <==
# This is the CMakeCache file.
# For build in directory: /<<PKGBUILDDIR>>/build-mpi
# It was generated by CMake: /usr/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.
########################
# EXTERNAL cache entries
########################
//Value Computed by CMake
ADIOS2_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/build-mpi
//Prefer shared Blosc2 libraries
ADIOS2_Blosc2_PREFER_SHARED:BOOL=ON
//No help, variable specified on the command line.
ADIOS2_EXECUTABLE_SUFFIX:STRING=.mpi
//Value Computed by CMake
ADIOS2_IS_TOP_LEVEL:STATIC=ON
//No help, variable specified on the command line.
ADIOS2_LIBRARY_FLAVOR:STRING=mpi
//No help, variable specified on the command line.
ADIOS2_LIBRARY_SUFFIX:STRING=_mpi
//No help, variable specified on the command line.
ADIOS2_Python_Version:UNINITIALIZED=3.12
//Value Computed by CMake
ADIOS2_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>
//Enable support for S3 compatible storage using AWS SDK's S3 module
ADIOS2_USE_AWSSDK:STRING=OFF
//No help, variable specified on the command line.
ADIOS2_USE_BZip2:BOOL=ON
//No help, variable specified on the command line.
ADIOS2_USE_Blosc:BOOL=ON
//Enable support for c-blosc-2 transforms
ADIOS2_USE_Blosc2:STRING=AUTO
//Enable support for Cuda
ADIOS2_USE_CUDA:STRING=OFF
//Enable support for Campaigns (requires SQLite3 and ZLIB)
ADIOS2_USE_Campaign:STRING=AUTO
//Enable support for in situ visualization plugin using ParaView
// Catalyst
ADIOS2_USE_Catalyst:STRING=AUTO
//Enable support for DAOS
ADIOS2_USE_DAOS:STRING=AUTO
//Enable support for DataMan
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dh_auto_configure: error: cd build-mpi && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON -GNinja -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -DADIOS2_USE_EXTERNAL_ENET:BOOL=ON -DADIOS2_USE_BZip2:BOOL=ON -DADIOS2_USE_Blosc:BOOL=ON -DADIOS2_USE_Fortran:BOOL=ON -DADIOS2_USE_HDF5:BOOL=ON -DADIOS2_USE_PNG:BOOL=ON -DADIOS2_USE_SST:BOOL=ON -DADIOS2_USE_ZeroMQ:BOOL=ON -DADIOS2_USE_Python:BOOL=ON -DADIOS2_Python_Version=3.12 -DEVPATH_TRANSPORT_MODULES=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DADIOS2_USE_MPI:BOOL=ON -DADIOS2_USE_SSC:BOOL=ON -DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/mpi -DADIOS2_LIBRARY_FLAVOR:STRING=mpi -DADIOS2_LIBRARY_SUFFIX:STRING=_mpi -DADIOS2_EXECUTABLE_SUFFIX:STRING=.mpi -DMPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi -DMPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic\+\+.openmpi -DMPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpifort.openmpi -DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi .. returned exit code 1
Traceback (most recent call last):
File "/usr/bin/dh_ctest_configure", line 33, in <module>
sys.exit(load_entry_point('dh-cmake==0.6.2', 'console_scripts', 'dh_ctest_configure')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/dhcmake/ctest.py", line 224, in configure
dhctest.configure()
File "/usr/lib/python3/dist-packages/dhcmake/common.py", line 50, in wrapped
return func(self, *args, **kargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/dhcmake/ctest.py", line 169, in configure
self.do_ctest_step("configure", "dh_auto_configure")
File "/usr/lib/python3/dist-packages/dhcmake/ctest.py", line 99, in do_ctest_step
self.do_cmd([cmd, *self.parsed_args])
File "/usr/lib/python3/dist-packages/dhcmake/common.py", line 187, in do_cmd
subprocess.run(args, stdout=self.stdout, stderr=self.stderr,
File "/usr/lib/python3.12/subprocess.py", line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['dh_auto_configure', '-O--ctest-testing-dir=build-mpi', '--builddirectory=build-mpi', '-O--ctest-build-suffix=-mpi', '-O--buildsystem=cmake+ninja', '--', '-DADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON', '-DADIOS2_USE_EXTERNAL_ENET:BOOL=ON', '-DADIOS2_USE_BZip2:BOOL=ON', '-DADIOS2_USE_Blosc:BOOL=ON', '-DADIOS2_USE_Fortran:BOOL=ON', '-DADIOS2_USE_HDF5:BOOL=ON', '-DADIOS2_USE_PNG:BOOL=ON', '-DADIOS2_USE_SST:BOOL=ON', '-DADIOS2_USE_ZeroMQ:BOOL=ON', '-DADIOS2_USE_Python:BOOL=ON', '-DADIOS2_Python_Version=3.12', '-DEVPATH_TRANSPORT_MODULES=ON', '-DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON', '-DADIOS2_USE_MPI:BOOL=ON', '-DADIOS2_USE_SSC:BOOL=ON', '-DCMAKE_INSTALL_CMAKEDIR:STRING=lib/aarch64-linux-gnu/cmake/adios2/mpi', '-DADIOS2_LIBRARY_FLAVOR:STRING=mpi', '-DADIOS2_LIBRARY_SUFFIX:STRING=_mpi', '-DADIOS2_EXECUTABLE_SUFFIX:STRING=.mpi', '-DMPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi', '-DMPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic++.openmpi', '-DMPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpifort.openmpi', '-DHDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi']' returned non-zero exit status 2.
make[1]: *** [debian/rules:103: configure_mpi] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:42: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-10-26T17:20:21Z
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/892446/
About the archive rebuild: The build was made on debusine.debian.net,
on arm64 using sbuild.
You can find the build task here:
https://debusine.debian.net/work-request/42076/
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks,
Stefano
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