Bug#1081052: adios: FTBFS: mpi-compat.h:7:10: fatal error: mpi.h: No such file or directory
Santiago Vila
sanvila at debian.org
Sat Sep 7 17:53:25 BST 2024
Package: src:adios
Version: 1.13.1-37
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules build
dh build
dh_update_autotools_config
cp -an --reflink=auto config/config.guess debian/.debhelper/bucket/files/3dfc63c81063ba5edeb599dc48f958e2e4c4759c968d012a4095e53441af7c1d.tmp
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
mv debian/.debhelper/bucket/files/3dfc63c81063ba5edeb599dc48f958e2e4c4759c968d012a4095e53441af7c1d.tmp debian/.debhelper/bucket/files/3dfc63c81063ba5edeb599dc48f958e2e4c4759c968d012a4095e53441af7c1d
cp -f /usr/share/misc/config.guess ./config/config.guess
cp -an --reflink=auto config/config.sub debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp
cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead
mv debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472
cp -f /usr/share/misc/config.sub ./config/config.sub
dh_autoreconf
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.before
[... snipped ...]
Making all in global-array-time
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/global-array-time'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/global-array-time -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_globaltime.o ../../../../examples/C/global-array-time/adios_globaltime.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/global-array-time -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_globaltime_no_xml.o ../../../../examples/C/global-array-time/adios_globaltime_no_xml.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/global-array-time -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read_globaltime.o ../../../../examples/C/global-array-time/adios_read_globaltime.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/global-array-time -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read_globaltime_streaming.o ../../../../examples/C/global-array-time/adios_read_globaltime_streaming.c
test "../../../../examples/C/global-array-time" = "." || cp ../../../../examples/C/global-array-time/*.xml .
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_globaltime adios_globaltime.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_globaltime_no_xml adios_globaltime_no_xml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_globaltime adios_globaltime.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_globaltime_no_xml adios_globaltime_no_xml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read_globaltime adios_read_globaltime.o ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read_globaltime_streaming adios_read_globaltime_streaming.o ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read_globaltime_streaming adios_read_globaltime_streaming.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read_globaltime adios_read_globaltime.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/global-array-time'
Making all in joined-array
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/joined-array'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/joined-array -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o joined-array.o ../../../../examples/C/joined-array/joined-array.c
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o joined-array joined-array.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o joined-array joined-array.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/joined-array'
Making all in read_all
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/read_all'
gcc -DHAVE_CONFIG_H -I. -I../../../../examples/C/read_all -I../../.. -D_NOMPI -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o read_all-read_all.o `test -f 'read_all.c' || echo '../../../../examples/C/read_all/'`read_all.c
gcc -DHAVE_CONFIG_H -I. -I../../../../examples/C/read_all -I../../.. -D_NOMPI -DADIOS_USE_READ_API_1 -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o read_all_v1-read_all_v1.o `test -f 'read_all_v1.c' || echo '../../../../examples/C/read_all/'`read_all_v1.c
/bin/bash ../../../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o read_all_v1 read_all_v1-read_all_v1.o ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o read_all read_all-read_all.o ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o read_all_v1 read_all_v1-read_all_v1.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o read_all read_all-read_all.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/read_all'
Making all in stat
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/stat'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/stat -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o stat_write.o ../../../../examples/C/stat/stat_write.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/stat -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o stat_read.o ../../../../examples/C/stat/stat_read.c
test "../../../../examples/C/stat" = "." || cp ../../../../examples/C/stat/*.xml .
test "../../../../examples/C/stat" = "." || cp ../../../../examples/C/stat/job.pbs .
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o stat_write stat_write.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o stat_read stat_read.o ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o stat_write stat_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o stat_read stat_read.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/stat'
Making all in schema
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/schema'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o uniform2d.o ../../../../examples/C/schema/uniform2d.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o rectilinear2d.o ../../../../examples/C/schema/rectilinear2d.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o structured2d.o ../../../../examples/C/schema/structured2d.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o tri2d.o ../../../../examples/C/schema/tri2d.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o triangle2d.o ../../../../examples/C/schema/triangle2d.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o uniform2d_noxml.o ../../../../examples/C/schema/uniform2d_noxml.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o rectilinear2d_noxml.o ../../../../examples/C/schema/rectilinear2d_noxml.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o structured2d_noxml.o ../../../../examples/C/schema/structured2d_noxml.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/schema -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o tri2d_noxml.o ../../../../examples/C/schema/tri2d_noxml.c
test "../../../../examples/C/schema" = "." || cp ../../../../examples/C/schema/*.xml .
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o uniform2d uniform2d.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o rectilinear2d rectilinear2d.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o uniform2d uniform2d.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o rectilinear2d rectilinear2d.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o structured2d structured2d.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o tri2d tri2d.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o structured2d structured2d.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o tri2d tri2d.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o triangle2d triangle2d.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o uniform2d_noxml uniform2d_noxml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o triangle2d triangle2d.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o uniform2d_noxml uniform2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o rectilinear2d_noxml rectilinear2d_noxml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o structured2d_noxml structured2d_noxml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o rectilinear2d_noxml rectilinear2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o structured2d_noxml structured2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o tri2d_noxml tri2d_noxml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o tri2d_noxml tri2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/schema'
Making all in flexpath_arrays
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays'
Making all in process_select
make[7]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays/process_select'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/flexpath_arrays/process_select -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o arrays_write.o ../../../../../examples/C/flexpath_arrays/process_select/arrays_write.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/flexpath_arrays/process_select -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o arrays_read.o ../../../../../examples/C/flexpath_arrays/process_select/arrays_read.c
test "../../../../../examples/C/flexpath_arrays/process_select" = "." || cp ../../../../../examples/C/flexpath_arrays/process_select/*.xml .
test "../../../../../examples/C/flexpath_arrays/process_select" = "." || cp ../../../../../examples/C/flexpath_arrays/process_select/*.pbs .
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_write arrays_write.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_read arrays_read.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o arrays_write arrays_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o arrays_read arrays_read.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[7]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays/process_select'
Making all in global_range_select
make[7]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays/global_range_select'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/flexpath_arrays/global_range_select -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o arrays_write.o ../../../../../examples/C/flexpath_arrays/global_range_select/arrays_write.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/flexpath_arrays/global_range_select -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o arrays_read.o ../../../../../examples/C/flexpath_arrays/global_range_select/arrays_read.c
test "../../../../../examples/C/flexpath_arrays/global_range_select" = "." || cp ../../../../../examples/C/flexpath_arrays/global_range_select/*.xml .
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_write arrays_write.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_read arrays_read.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o arrays_write arrays_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o arrays_read arrays_read.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[7]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays/global_range_select'
make[7]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays'
make[7]: Nothing to be done for 'all-am'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/flexpath_arrays'
Making all in transforms
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/transforms'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/transforms -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_global.o ../../../../examples/C/transforms/adios_global.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/transforms -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read_subv.o ../../../../examples/C/transforms/adios_read_subv.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/transforms -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read_points.o ../../../../examples/C/transforms/adios_read_points.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/transforms -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read_wb_subpg.o ../../../../examples/C/transforms/adios_read_wb_subpg.c
test "../../../../examples/C/transforms" = "." || cp ../../../../examples/C/transforms/*.xml .
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_global adios_global.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read_subv adios_read_subv.o ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read_subv adios_read_subv.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_global adios_global.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read_points adios_read_points.o ../../../src/libadiosread.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read_points adios_read_points.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read_wb_subpg adios_read_wb_subpg.o ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read_wb_subpg adios_read_wb_subpg.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/transforms'
Making all in query
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/query'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/query -I../../.. -I../../../src/public -I../../../../src/public -I../../../../src/query -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o write_vars.o ../../../../examples/C/query/write_vars.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/query -I../../.. -I../../../src/public -I../../../../src/public -I../../../../src/query -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o query_vars.o ../../../../examples/C/query/query_vars.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/query -I../../.. -I../../../src/public -I../../../../src/public -I../../../../src/query -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o write_table.o ../../../../examples/C/query/write_table.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/query -I../../.. -I../../../src/public -I../../../../src/public -I../../../../src/query -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o query_table.o ../../../../examples/C/query/query_table.c
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o write_vars write_vars.o ../../../src/libadios_nompi.a -libverbs -lnetcdf -lhdf5_hl -lhdf5 -lz -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o write_vars write_vars.o -L/usr/lib64 -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial ../../../src/libadios_nompi.a -libverbs -lnetcdf -lhdf5_hl -lhdf5 -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o query_vars query_vars.o ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o query_vars query_vars.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o write_table write_table.o ../../../src/libadios_nompi.a -libverbs -lnetcdf -lhdf5_hl -lhdf5 -lz -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o query_table query_table.o ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o write_table write_table.o -L/usr/lib64 -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial ../../../src/libadios_nompi.a -libverbs -lnetcdf -lhdf5_hl -lhdf5 -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o query_table query_table.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosread_nompi.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/query'
Making all in icee_arrays
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays'
Making all in array
make[7]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays/array'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/icee_arrays/array -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_write.o ../../../../../examples/C/icee_arrays/array/adios_write.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../../examples/C/icee_arrays/array -I../../../.. -I../../../../src/public -I../../../../../src -I../../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o adios_read.o ../../../../../examples/C/icee_arrays/array/adios_read.c
test "../../../../../examples/C/icee_arrays/array" = "." || cp ../../../../../examples/C/icee_arrays/array/README.txt .
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_write adios_write.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_read adios_read.o ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_write adios_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o adios_read adios_read.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[7]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays/array'
make[7]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays'
make[7]: Nothing to be done for 'all-am'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/icee_arrays'
Making all in time_aggregation
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/time_aggregation'
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/time_aggregation -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o time_aggregation.o ../../../../examples/C/time_aggregation/time_aggregation.c
mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/C/time_aggregation -I../../.. -I../../../src/public -I../../../../src -I../../../../src/public -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -c -o time_aggregation_no_xml.o ../../../../examples/C/time_aggregation/time_aggregation_no_xml.c
test "../../../../examples/C/time_aggregation" = "." || cp ../../../../examples/C/time_aggregation/*.xml .
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o time_aggregation time_aggregation.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=CC --mode=link mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o time_aggregation_no_xml time_aggregation_no_xml.o ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o time_aggregation time_aggregation.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpicc.openmpi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wl,-z -Wl,relro -o time_aggregation_no_xml time_aggregation_no_xml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadios.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C/time_aggregation'
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C'
make[6]: Nothing to be done for 'all-am'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/C'
Making all in Fortran
make[5]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran'
Making all in scalars
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/scalars'
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/scalars -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o scalars_write.o ../../../../examples/Fortran/scalars/scalars_write.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/scalars -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o scalars_read.o ../../../../examples/Fortran/scalars/scalars_read.F90
test "../../../../examples/Fortran/scalars" = "." || cp ../../../../examples/Fortran/scalars/*.xml .
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o scalars_write scalars_write.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o scalars_read scalars_read.o ../../../src/libadiosreadf.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o scalars_read scalars_read.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosreadf.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o scalars_write scalars_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/scalars'
Making all in arrays
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/arrays'
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/arrays -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o arrays_write.o ../../../../examples/Fortran/arrays/arrays_write.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/arrays -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o arrays_read.o ../../../../examples/Fortran/arrays/arrays_read.F90
test "../../../../examples/Fortran/arrays" = "." || cp ../../../../examples/Fortran/arrays/*.xml .
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_write arrays_write.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o arrays_read arrays_read.o ../../../src/libadiosreadf.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o arrays_write arrays_write.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o arrays_read arrays_read.o -L/usr/lib64 -L/usr/lib ../../../src/libadiosreadf.a -libverbs -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/arrays'
Making all in global-array
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/global-array'
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/global-array -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o adios_global.o ../../../../examples/Fortran/global-array/adios_global.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/global-array -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o adios_global_no_xml.o ../../../../examples/Fortran/global-array/adios_global_no_xml.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/global-array -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o no_xml_write_byid.o ../../../../examples/Fortran/global-array/no_xml_write_byid.F90
test "../../../../examples/Fortran/global-array" = "." || cp ../../../../examples/Fortran/global-array/*.xml .
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_global adios_global.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o adios_global adios_global.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_global_no_xml adios_global_no_xml.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o adios_global_no_xml adios_global_no_xml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o no_xml_write_byid no_xml_write_byid.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o no_xml_write_byid no_xml_write_byid.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/global-array'
Making all in global-array-time
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/global-array-time'
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/global-array-time -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o adios_globaltime.o ../../../../examples/Fortran/global-array-time/adios_globaltime.F90
test "../../../../examples/Fortran/global-array-time" = "." || cp ../../../../examples/Fortran/global-array-time/*.xml .
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o adios_globaltime adios_globaltime.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o adios_globaltime adios_globaltime.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/global-array-time'
Making all in schema
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/schema'
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/schema -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o uniform2d_noxml.o ../../../../examples/Fortran/schema/uniform2d_noxml.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/schema -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o rectilinear2d_noxml.o ../../../../examples/Fortran/schema/rectilinear2d_noxml.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/schema -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o structured2d_noxml.o ../../../../examples/Fortran/schema/structured2d_noxml.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/schema -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o tri2d_noxml.o ../../../../examples/Fortran/schema/tri2d_noxml.F90
mpif90.openmpi -DHAVE_CONFIG_H -I. -I../../../../examples/Fortran/schema -I../../.. -I../../../src/public -I../../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -c -o tri2d_noxml_seperate.o ../../../../examples/Fortran/schema/tri2d_noxml_seperate.F90
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o uniform2d_f_noxml uniform2d_noxml.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o uniform2d_f_noxml uniform2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o rectilinear2d_f_noxml rectilinear2d_noxml.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o rectilinear2d_f_noxml rectilinear2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o structured2d_f_noxml structured2d_noxml.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o structured2d_f_noxml structured2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o tri2d_f_noxml tri2d_noxml.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o tri2d_f_noxml tri2d_noxml.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
/bin/bash ../../../libtool --tag=FC --mode=link mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-z,relro -o tri2d_f_noxml_seperate tri2d_noxml_seperate.o ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -lz -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
libtool: link: mpif90.openmpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -o tri2d_f_noxml_seperate tri2d_noxml_seperate.o -L/usr/lib/x86_64-linux-gnu/netcdf/mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib64 -L/usr/lib ../../../src/libadiosf.a -lnetcdf -lhdf5_hl -lhdf5 -libverbs -lglib-2.0 -lz -lbz2 -lsz -llz4 -lblosc -lm -lpthread
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran/schema'
make[6]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran'
make[6]: Nothing to be done for 'all-am'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples/Fortran'
make[5]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi/examples'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi/examples'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build-openmpi'
rm -f adios_config.flags adios_config.flags.tmp
test -f ./adios_config.flags.makesrc; \
sed -e 's|%libdir[%]|/usr/lib/x86_64-linux-gnu|g' -e 's|%includedir[%]|/usr/include|g' -e 's|%sysconfdir[%]|/etc|g' -e 's|%prefix[%]|/usr|g' -e 's|%VERSION[%]|1.13.1|g' -e 's|%srcdir[%]|/<<PKGBUILDDIR>>/build-openmpi/..|g' -e 's|%builddir[%]|/<<PKGBUILDDIR>>/build-openmpi|g' adios_config.flags.makesrc >adios_config.flags.tmp
chmod +x adios_config.flags.tmp
chmod a-w adios_config.flags.tmp
mv adios_config.flags.tmp adios_config.flags
rm -f adios_config adios_config.tmp
test -f ./adios_config.makesrc; \
sed -e 's|%libdir[%]|/usr/lib/x86_64-linux-gnu|g' -e 's|%includedir[%]|/usr/include|g' -e 's|%sysconfdir[%]|/etc|g' -e 's|%prefix[%]|/usr|g' -e 's|%VERSION[%]|1.13.1|g' -e 's|%srcdir[%]|/<<PKGBUILDDIR>>/build-openmpi/..|g' -e 's|%builddir[%]|/<<PKGBUILDDIR>>/build-openmpi|g' adios_config.makesrc >adios_config.tmp
chmod +x adios_config.tmp
chmod a-w adios_config.tmp
mv adios_config.tmp adios_config
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build-openmpi'
# Need to hack the libs into the right place, to match adios_configs view
# as this is then used by setup.py
install -D -t debian/tmp/usr/lib build-openmpi/src/*.a
install -m 755 -t /<<PKGBUILDDIR>> build-openmpi/adios_config build-openmpi/adios_config.flags
# MPICH
install -D -t debian/tmp/usr/lib build-mpich/src/*.a
for p in python3.12 ; do \
( set -e ; cd build-mpich/numpy && \
/usr/bin/make python3 CYTHON3=y MPI=y && \
$p ./setup_mpi.py build_ext --mpicc=mpicc.mpich --mpicxx=mpicxx.mpich ) ; \
done
make[2]: Entering directory '/<<PKGBUILDDIR>>/build-mpich/numpy'
cython3 --cplus -3 -o adios3_mpi.cpp adios_mpi.pyx
warning: adios_mpi.pyx:965:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:966:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:967:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:968:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:969:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:970:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:971:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:972:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:973:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:974:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:977:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:978:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:979:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:980:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1219:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1220:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1221:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1222:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1272:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1273:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1274:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1275:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1276:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1277:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1278:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1279:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1734:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1735:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1812:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1815:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1816:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1945:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1946:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1947:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1948:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1949:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1950:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1951:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1952:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1954:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1955:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1957:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1427:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1428:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
cython3 --cplus -3 -o adios3.cpp adios.pyx
warning: adios.pyx:964:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:965:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:966:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:967:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:968:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:969:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:970:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:971:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:972:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:973:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:976:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:977:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:978:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:979:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1218:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1219:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1220:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1221:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1271:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1272:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1273:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1274:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1275:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1276:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1277:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1278:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1733:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1734:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1811:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1814:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1815:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1944:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1945:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1946:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1947:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1948:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1949:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1950:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1951:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1953:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1954:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1956:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1426:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios.pyx:1427:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
python3 setup.py build_ext -lrt
/<<PKGBUILDDIR>>/build-mpich/numpy/setup.py:78: SyntaxWarning: invalid escape sequence '\s'
metadata = dict(re.findall("__([a-z]+)__\s*=\s*'([^']+)'", module_file))
/<<PKGBUILDDIR>>/build-mpich/numpy/setup.py:28: DeprecationWarning: Use shutil.which instead of find_executable
cmd = find_executable("adios_config")
/usr/lib/python3/dist-packages/setuptools/dist.py:450: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2024-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from adios3.cpp:767:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
python3 setup3.py build_ext -lrt
/<<PKGBUILDDIR>>/build-mpich/numpy/setup3.py:27: DeprecationWarning: Use shutil.which instead of find_executable
cmd = find_executable("adios_config")
/usr/lib/python3/dist-packages/setuptools/dist.py:450: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2024-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from adios3.cpp:767:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
cython3 --cplus adios_mpi.pyx
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/build-mpich/numpy/adios_mpi.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: adios_mpi.pyx:965:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:966:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:967:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:968:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:969:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:970:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:971:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:972:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:973:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:974:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:977:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:978:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:979:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:980:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1219:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1220:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1221:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1222:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1272:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1273:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1274:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1275:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1276:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1277:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1278:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1279:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1734:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1735:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1812:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1815:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1816:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1945:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1946:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1947:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1948:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1949:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1950:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1951:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1952:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1954:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1955:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1957:10: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1427:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
warning: adios_mpi.pyx:1428:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
python3 setup_mpi.py build
/<<PKGBUILDDIR>>/build-mpich/numpy/setup_mpi.py:134: SyntaxWarning: invalid escape sequence '\s'
metadata = dict(re.findall("__([a-z]+)__\s*=\s*'([^']+)'", module_file))
/<<PKGBUILDDIR>>/build-mpich/numpy/conf/mpidistutils.py:32: SyntaxWarning: invalid escape sequence '\s'
flag, count = re.subn('-arch\s+\w+', ' ', flag)
/<<PKGBUILDDIR>>/build-mpich/numpy/setup_mpi.py:93: DeprecationWarning: Use shutil.which instead of find_executable
cmd = find_executable("adios_config")
/usr/lib/python3/dist-packages/setuptools/dist.py:450: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2024-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
In file included from adios_mpi.cpp:764:
mpi-compat.h:7:10: fatal error: mpi.h: No such file or directory
7 | #include <mpi.h>
| ^~~~~~~
compilation terminated.
error: command '/usr/bin/x86_64-linux-gnu-g++' failed with exit code 1
make[2]: *** [Makefile:55: adios_mpi.so] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build-mpich/numpy'
make[1]: *** [debian/rules:128: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:62: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202409/
About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
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