Bug#1102784: spglib: FTBFS: scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: "project.license-files" must not be used when "project.license" is not a SPDX license expression
Santiago Vila
sanvila at debian.org
Sat Apr 12 17:23:35 BST 2025
Package: src:spglib
Version: 2.6.0-1
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem cmake --with python3
dh_auto_clean -O--buildsystem=cmake
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --buildsystem pybuild
rm -rf .pytest_cache/ test/functional/python/__pycache__/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules binary
dh binary --buildsystem cmake --with python3
dh_update_autotools_config -O--buildsystem=cmake
dh_autoreconf -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DSPGLIB_WITH_Fortran=ON
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PK [too-long-redacted] gnu -DSPGLIB_WITH_Fortran=ON ..
-- The C compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Spglib:: Build type: None
-- Spglib:: Version 2.6.0
-- The Fortran compiler identification is GNU 14.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (0.7s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -O--buildsystem=cmake
cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
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make -f CMakeFiles/Spglib_DynamicVersion.dir/build.make CMakeFiles/Spglib_DynamicVersion.dir/depend
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/Spglib_DynamicVersion.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/fortran /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/CMakeFiles/Spglib_Fortran_DynamicVersion.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/Spglib_DynamicVersion.dir/build.make CMakeFiles/Spglib_DynamicVersion.dir/build
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake -DDynamicVersion_RUN:BOOL=True -DDynamicVersion_ARGS:STRING="PROJECT_SOURCE;/<<PKGBUILDDIR>>/fortran/..;GIT_ARCHIVAL_FILE;/<<PKGBUILDDIR>>/fortran/../.git_archival.txt;TMP_FOLDER;/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/tmp;VERSION_FULL_MODE;DEV;FALLBACK_VERSION;0.0.0" -P /<<PKGBUILDDIR>>/cmake/DynamicVersion.cmake
/usr/bin/cmake -DDynamicVersion_RUN:BOOL=True -DDynamicVersion_ARGS:STRING="PROJECT_SOURCE;/<<PKGBUILDDIR>>;GIT_ARCHIVAL_FILE;/<<PKGBUILDDIR>>/.git_archival.txt;TMP_FOLDER;/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tmp;VERSION_FULL_MODE;DEV;FALLBACK_VERSION;0.0.0" -P /<<PKGBUILDDIR>>/cmake/DynamicVersion.cmake
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake -E copy_if_different /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/tmp/.DynamicVersion.json /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/.DynamicVersion.json
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/fortran /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/CMakeFiles/Spglib_Fortran_Version.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake -E copy_if_different /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/tmp/.version /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/.version
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake -E copy_if_different /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/tmp/.git_describe /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/.git_describe
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake -E cmake_symlink_library libspglib_f08.so.2.6.0 libspglib_f08.so.2 libspglib_f08.so
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Scanning dependencies of target Spglib_Fortran_tests
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/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp: In member function ‘virtual void SymmetrySearch_test_spg_get_symmetry_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:33:28: warning: ‘int spg_get_symmetry(int (*)[3][3], double (*)[3], int, const double (*)[3], const double (*)[3], const int*, int, double)’ is deprecated: Use the variables from SpglibDataset (rotations, translations) [-Wdeprecated-declarations]
33 | size = spg_get_symmetry(rotation, translation, max_size, lattice, position,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
34 | types, num_atom, 1e-5);
| ~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:248:13: note: declared here
248 | SPG_API int spg_get_symmetry(int rotation[][3][3], double translation[][3],
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp: In member function ‘virtual void SymmetrySearch_test_spg_get_multiplicity_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:81:32: warning: ‘int spg_get_multiplicity(const double (*)[3], const double (*)[3], const int*, int, double)’ is deprecated: Use the variables from SpglibDataset (n_operations) [-Wdeprecated-declarations]
81 | size = spg_get_multiplicity(lattice, position, types, num_atom, 1e-5);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/spglib.h:354:13: note: declared here
354 | SPG_API int spg_get_multiplicity(double const lattice[3][3],
| ^~~~~~~~~~~~~~~~~~~~
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[ 87%] Building CXX object test/CMakeFiles/Spglib_tests.dir/functional/c/test_find_primitive_cell.cpp.o
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/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp: In member function ‘virtual void SpacegroupTypeSearch_test_spg_get_international_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:20:30: warning: ‘int spg_get_international(char*, const double (*)[3], const double (*)[3], const int*, int, double)’ is deprecated: Use the variables from SpglibDataset (spacegroup_number, international_symbol) [-Wdeprecated-declarations]
20 | spg_get_international(symbol, lattice, position, types, num_atom, 1e-5);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:368:13: note: declared here
368 | SPG_API int spg_get_international(char symbol[11], double const lattice[3][3],
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp: In member function ‘virtual void SpacegroupTypeSearch_test_spg_get_schoenflies_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:38:28: warning: ‘int spg_get_schoenflies(char*, const double (*)[3], const double (*)[3], const int*, int, double)’ is deprecated: Use the variables from SpglibDataset (spacegroup_number, international_symbol) [-Wdeprecated-declarations]
38 | spg_get_schoenflies(symbol, lattice, position, types, num_atom, 1e-5);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/spglib.h:384:13: note: declared here
384 | SPG_API int spg_get_schoenflies(char symbol[7], double const lattice[3][3],
| ^~~~~~~~~~~~~~~~~~~
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/<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp: In member function ‘virtual void DatasetAccess_test_spg_get_hall_number_from_symmetry_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp:37:52: warning: ‘int spg_get_hall_number_from_symmetry(const int (*)[3][3], const double (*)[3], int, double)’ is deprecated: Use the variable from SpglibSpacegroupType instead (hall_number) [-Wdeprecated-declarations]
37 | hall_number = spg_get_hall_number_from_symmetry(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
38 | dataset->rotations, dataset->translations, dataset->n_operations,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | symprec);
| ~~~~~~~~
In file included from /<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:327:13: note: declared here
327 | SPG_API int spg_get_hall_number_from_symmetry(int const rotation[][3][3],
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp: In member function ‘virtual void MagneticSymmetry_test_spg_get_symmetry_with_tensors_rough_symprec_Test::TestBody()’:
/<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp:224:28: warning: ‘int spg_get_symmetry(int (*)[3][3], double (*)[3], int, const double (*)[3], const double (*)[3], const int*, int, double)’ is deprecated: Use the variables from SpglibDataset (rotations, translations) [-Wdeprecated-declarations]
224 | size = spg_get_symmetry(rotations, translations, max_size, lattice,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
225 | positions, types, num_atoms, symprec);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:248:13: note: declared here
248 | SPG_API int spg_get_symmetry(int rotation[][3][3], double translation[][3],
| ^~~~~~~~~~~~~~~~
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[100%] Linking CXX executable test_suite
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[100%] Built target Spglib_tests
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debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --buildsystem pybuild -- --after-build 'rm -rf {build_dir}/spglib/lib'
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_spglib
* Building wheel...
/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/__init__.py:293: ConfigurationWarning: Set "project.license" to an SPDX license expression for metadata >= 2.4
self.validate()
+ Exception Group Traceback (most recent call last):
| File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 389, in <module>
| main()
| ~~~~^^
| File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in main
| json_out["return_val"] = hook(**hook_input["kwargs"])
| ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 280, in build_wheel
| return _build_backend().build_wheel(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
| wheel_directory, config_settings, metadata_directory
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
| )
| ^
| File "/usr/lib/python3/dist-packages/scikit_build_core/build/__init__.py", line 33, in build_wheel
| return _build_wheel_impl(
| ~~~~~~~~~~~~~~~~~^
| wheel_directory,
| ^^^^^^^^^^^^^^^^
| ...<2 lines>...
| editable=False,
| ^^^^^^^^^^^^^^^
| ).wheel_filename
| ^
| File "/usr/lib/python3/dist-packages/scikit_build_core/build/wheel.py", line 174, in _build_wheel_impl
| return _build_wheel_impl_impl(
| wheel_directory,
| ...<5 lines>...
| pyproject=pyproject,
| )
| File "/usr/lib/python3/dist-packages/scikit_build_core/build/wheel.py", line 231, in _build_wheel_impl_impl
| metadata = get_standard_metadata(pyproject, settings)
| File "/usr/lib/python3/dist-packages/scikit_build_core/build/metadata.py", line 75, in get_standard_metadata
| metadata = StandardMetadata.from_pyproject(
| new_pyproject_dict, all_errors=True, allow_extra_keys=allow_extra_keys
| )
| File "/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/__init__.py", line 469, in from_pyproject
| pyproject.finalize("Failed to parse pyproject.toml")
| ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/errors.py", line 108, in finalize
| raise ExceptionGroup(msg, self.errors)
| ExceptionGroup: Failed to parse pyproject.toml (1 sub-exception)
+-+---------------- 1 ----------------
| scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: "project.license-files" must not be used when "project.license" is not a SPDX license expression
+------------------------------------
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:389: build: plugin pyproject failed with: exit code=1: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_spglib
dh_auto_build: error: pybuild --build -i python{version} -p 3.13 --after-build "rm -rf {build_dir}/spglib/lib" returned exit code 13
make[1]: *** [debian/rules:16: execute_after_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202504/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:spglib, so that this is still
visible in the BTS web page for this package.
Thanks.
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