Bug#1120202: guidata: FTBFS: E RuntimeError: wrapped C/C++ object of type Console has been deleted
Santiago Vila
sanvila at debian.org
Thu Nov 6 11:59:00 GMT 2025
Package: src:guidata
Version: 3.6.2-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202511/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:guidata, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with=python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules execute_before_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf build/html
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with=python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
[... snipped ...]
writing output... [ 67%] reference/dataset/io
writing output... [ 71%] reference/dataset/qtwidgets
writing output... [ 75%] reference/guitest
writing output... [ 79%] reference/index
writing output... [ 83%] reference/userconfig
writing output... [ 88%] reference/utils
writing output... [ 92%] reference/widgets
writing output... [ 96%] requirements
writing output... [100%] widgets
generating indices... genindex py-modindex done
writing additional pages... search done
copying images... [ 6%] images/basic_example.png
copying images... [ 12%] images/screenshots/__init__.png
copying images... [ 19%] images/screenshots/all_items.png
copying images... [ 25%] images/screenshots/all_features.png
copying images... [ 31%] images/screenshots/editgroupbox.png
copying images... [ 38%] images/screenshots/bool_selector.png
copying images... [ 44%] images/screenshots/activable_dataset.png
copying images... [ 50%] images/screenshots/datasetgroup.png
copying images... [ 56%] images/guidata-banner.png
copying images... [ 62%] images/layout_example.png
copying images... [ 69%] images/screenshots/console.png
copying images... [ 75%] images/screenshots/codeeditor.png
copying images... [ 81%] images/screenshots/arrayeditor.png
copying images... [ 88%] images/screenshots/collectioneditor.png
copying images... [ 94%] images/screenshots/dataframeeditor.png
copying images... [100%] images/screenshots/importwizard.png
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.
The HTML pages are in build/html.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_guidata/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0
guidata 3.6.2, PyQt5 5.15.11 [Qt version: 5.15.17]
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_guidata/build
configfile: pyproject.toml
plugins: xvfb-3.0.0, typeguard-4.4.4
collected 40 items
guidata/tests/dataset/test_activable_dataset.py . [ 2%]
guidata/tests/dataset/test_activable_items.py . [ 5%]
guidata/tests/dataset/test_all_features.py . [ 7%]
guidata/tests/dataset/test_all_items.py . [ 10%]
guidata/tests/dataset/test_all_items_readonly.py . [ 12%]
guidata/tests/dataset/test_bool_selector.py . [ 15%]
guidata/tests/dataset/test_callbacks.py . [ 17%]
guidata/tests/dataset/test_datasetgroup.py . [ 20%]
guidata/tests/dataset/test_editgroupbox.py . [ 22%]
guidata/tests/dataset/test_inheritance.py . [ 25%]
guidata/tests/dataset/test_item_order.py . [ 27%]
guidata/tests/dataset/test_loadsave_hdf5.py . [ 30%]
guidata/tests/dataset/test_loadsave_json.py . [ 32%]
guidata/tests/dataset/test_rotatedlabel.py . [ 35%]
guidata/tests/unit/test_config.py ... [ 42%]
guidata/tests/unit/test_data.py ... [ 50%]
guidata/tests/unit/test_dataset_from_dict.py . [ 52%]
guidata/tests/unit/test_dataset_from_func.py . [ 55%]
guidata/tests/unit/test_genreqs.py .s [ 60%]
guidata/tests/unit/test_h5fmt.py . [ 62%]
guidata/tests/unit/test_jsonfmt.py . [ 65%]
guidata/tests/unit/test_no_qt.py . [ 67%]
guidata/tests/unit/test_text.py s [ 70%]
guidata/tests/unit/test_translations.py . [ 72%]
guidata/tests/unit/test_updaterestoredataset.py . [ 75%]
guidata/tests/unit/test_userconfig_app.py . [ 77%]
guidata/tests/widgets/test_arrayeditor.py . [ 80%]
guidata/tests/widgets/test_arrayeditor_unit.py . [ 82%]
guidata/tests/widgets/test_codeeditor.py . [ 85%]
guidata/tests/widgets/test_collectionseditor.py F [ 87%]
guidata/tests/widgets/test_console.py F [ 90%]
guidata/tests/widgets/test_dataframeeditor.py . [ 92%]
guidata/tests/widgets/test_importwizard.py . [ 95%]
guidata/tests/widgets/test_objecteditor.py . [ 97%]
guidata/tests/widgets/test_theme.py s [100%]
=================================== FAILURES ===================================
____________________________ test_collectionseditor ____________________________
obj = array([[226, 236, 230, ..., 253, 123, 211],
[115, 213, 192, ..., 166, 44, 229],
[112, 170, 31, ..., 5..., 170, 45],
[160, 166, 241, ..., 205, 87, 154],
[143, 126, 50, ..., 18, 146, 111]], shape=(100, 100))
mode = 'P'
def fromarray(obj: SupportsArrayInterface, mode: str | None = None) -> Image:
"""
Creates an image memory from an object exporting the array interface
(using the buffer protocol)::
from PIL import Image
import numpy as np
a = np.zeros((5, 5))
im = Image.fromarray(a)
If ``obj`` is not contiguous, then the ``tobytes`` method is called
and :py:func:`~PIL.Image.frombuffer` is used.
In the case of NumPy, be aware that Pillow modes do not always correspond
to NumPy dtypes. Pillow modes only offer 1-bit pixels, 8-bit pixels,
32-bit signed integer pixels, and 32-bit floating point pixels.
Pillow images can also be converted to arrays::
from PIL import Image
import numpy as np
im = Image.open("hopper.jpg")
a = np.asarray(im)
When converting Pillow images to arrays however, only pixel values are
transferred. This means that P and PA mode images will lose their palette.
:param obj: Object with array interface
:param mode: Optional mode to use when reading ``obj``. Since pixel values do not
contain information about palettes or color spaces, this can be used to place
grayscale L mode data within a P mode image, or read RGB data as YCbCr for
example.
See: :ref:`concept-modes` for general information about modes.
:returns: An image object.
.. versionadded:: 1.1.6
"""
arr = obj.__array_interface__
shape = arr["shape"]
ndim = len(shape)
strides = arr.get("strides", None)
try:
typekey = (1, 1) + shape[2:], arr["typestr"]
except KeyError as e:
if mode is not None:
typekey = None
color_modes: list[str] = []
else:
msg = "Cannot handle this data type"
raise TypeError(msg) from e
if typekey is not None:
try:
> typemode, rawmode, color_modes = _fromarray_typemap[typekey]
^^^^^^^^^^^^^^^^^^^^^^^^^^^
E KeyError: ((1, 1), '<i8')
/usr/lib/python3/dist-packages/PIL/Image.py:3285: KeyError
The above exception was the direct cause of the following exception:
def test_collectionseditor():
"""Test Collections editor."""
with qt_app_context(exec_loop=True):
dialog = CollectionsEditor()
> dialog.setup(get_test_data())
^^^^^^^^^^^^^^^
guidata/tests/widgets/test_collectionseditor.py:120:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
guidata/tests/widgets/test_collectionseditor.py:111: in get_test_data
image = PILImage.fromarray(np.random.randint(256, size=(100, 100)), mode="P")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
obj = array([[226, 236, 230, ..., 253, 123, 211],
[115, 213, 192, ..., 166, 44, 229],
[112, 170, 31, ..., 5..., 170, 45],
[160, 166, 241, ..., 205, 87, 154],
[143, 126, 50, ..., 18, 146, 111]], shape=(100, 100))
mode = 'P'
def fromarray(obj: SupportsArrayInterface, mode: str | None = None) -> Image:
"""
Creates an image memory from an object exporting the array interface
(using the buffer protocol)::
from PIL import Image
import numpy as np
a = np.zeros((5, 5))
im = Image.fromarray(a)
If ``obj`` is not contiguous, then the ``tobytes`` method is called
and :py:func:`~PIL.Image.frombuffer` is used.
In the case of NumPy, be aware that Pillow modes do not always correspond
to NumPy dtypes. Pillow modes only offer 1-bit pixels, 8-bit pixels,
32-bit signed integer pixels, and 32-bit floating point pixels.
Pillow images can also be converted to arrays::
from PIL import Image
import numpy as np
im = Image.open("hopper.jpg")
a = np.asarray(im)
When converting Pillow images to arrays however, only pixel values are
transferred. This means that P and PA mode images will lose their palette.
:param obj: Object with array interface
:param mode: Optional mode to use when reading ``obj``. Since pixel values do not
contain information about palettes or color spaces, this can be used to place
grayscale L mode data within a P mode image, or read RGB data as YCbCr for
example.
See: :ref:`concept-modes` for general information about modes.
:returns: An image object.
.. versionadded:: 1.1.6
"""
arr = obj.__array_interface__
shape = arr["shape"]
ndim = len(shape)
strides = arr.get("strides", None)
try:
typekey = (1, 1) + shape[2:], arr["typestr"]
except KeyError as e:
if mode is not None:
typekey = None
color_modes: list[str] = []
else:
msg = "Cannot handle this data type"
raise TypeError(msg) from e
if typekey is not None:
try:
typemode, rawmode, color_modes = _fromarray_typemap[typekey]
except KeyError as e:
typekey_shape, typestr = typekey
msg = f"Cannot handle this data type: {typekey_shape}, {typestr}"
> raise TypeError(msg) from e
E TypeError: Cannot handle this data type: (1, 1), <i8
/usr/lib/python3/dist-packages/PIL/Image.py:3289: TypeError
_________________________________ test_console _________________________________
def test_console():
"""Test Console widget."""
with qt_app_context(exec_loop=True):
> widget = Console(debug=False, multithreaded=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
guidata/tests/widgets/test_console.py:22:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
guidata/widgets/console/__init__.py:51: in __init__
InternalShell.__init__(
guidata/widgets/console/internalshell.py:208: in __init__
self.start_interpreter(namespace)
guidata/widgets/console/internalshell.py:241: in start_interpreter
self.new_prompt(self.interpreter.p1)
guidata/widgets/console/shell.py:255: in new_prompt
if self.get_cursor_line_column()[1] != 0:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <guidata.widgets.console.Console object at 0x7f9c7fad1910>
def get_cursor_line_column(self):
"""Return cursor (line, column) numbers"""
> cursor = self.textCursor()
^^^^^^^^^^^^^^^^^
E RuntimeError: wrapped C/C++ object of type Console has been deleted
guidata/widgets/console/mixins.py:202: RuntimeError
=============================== warnings summary ===============================
guidata/tests/widgets/test_theme.py:71
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_guidata/build/guidata/tests/widgets/test_theme.py:71: PytestCollectionWarning: cannot collect test class 'TestWidget' because it has a __init__ constructor (from: guidata/tests/widgets/test_theme.py)
class TestWidget(BaseTestWidget):
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED guidata/tests/widgets/test_collectionseditor.py::test_collectionseditor
FAILED guidata/tests/widgets/test_console.py::test_console - RuntimeError: wr...
============== 2 failed, 35 passed, 3 skipped, 1 warning in 1.00s ==============
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_guidata/build; python3.13 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
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