Bug#1139553: silo-llnl: FTBFS aginst HDF5 2.1.0

Gilles Filippini pini at debian.org
Tue Jun 9 13:38:29 BST 2026


Source: silo-llnl
Version: 4.11-6.1
Severity: important
Tags: ftbfs

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Hi,

During a test rebuild of HDF5's reverse dependcies against HDF5 2.1.0
currently in experimental, silo-llnl FTBFS with:

silo_hdf5.c: In function 'db_hdf5_init':
silo_hdf5.c:961:60: error: passing argument 5 of 'db_hdf5_put_cmemb' from incompatible pointer type [-Wincompatible-pointer-types]
  961 |         db_hdf5_put_cmemb(_mt, #NAME, OFFSET(_m, NAME), 1, &_size, _tmp_m);   \
      |                                                            ^~~~~~
      |                                                            |
      |                                                            hsize_t * {aka long unsigned int *}
silo_hdf5.c:2202:9: note: in expansion of macro 'MEMBER_3'
 2202 |         MEMBER_3(double,        min_extents);
      |         ^~~~~~~~
silo_hdf5.c:1940:41: note: expected 'const int *' but argument is of type 'hsize_t *' {aka 'long unsigned int *'}
 1940 |                   int ndims, int const *dim, hid_t type)
      |                              ~~~~~~~~~~~^~~
silo_hdf5.c:963:54: error: passing argument 5 of 'db_hdf5_put_cmemb' from incompatible pointer type [-Wincompatible-pointer-types]
  963 |             db_hdf5_put_cmemb(_ft, #NAME, _f_off, 1, &_size, _tmp_f);         \
      |                                                      ^~~~~~
      |                                                      |
      |                                                      hsize_t * {aka long unsigned int *}
silo_hdf5.c:2202:9: note: in expansion of macro 'MEMBER_3'
 2202 |         MEMBER_3(double,        min_extents);
      |         ^~~~~~~~
silo_hdf5.c:1940:41: note: expected 'const int *' but argument is of type 'hsize_t *' {aka 'long unsigned int *'}
 1940 |                   int ndims, int const *dim, hid_t type)
      |                              ~~~~~~~~~~~^~~

It seems the source tree has to be adapted to support this new major release of HDF5.

Thanks,
_g.


- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

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