Bug#1131681: python-rioxarray: FTBFS: E AssertionError: Arrays are not almost equal to 7 decimals
Santiago Vila
sanvila at debian.org
Mon Mar 23 11:55:30 GMT 2026
Package: src:python-rioxarray
Version: 0.22.0-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202603/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-rioxarray, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module
I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_rioxarray
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
[... snipped ...]
test/integration/test_integration_rioxarray.py::test_to_raster[None-False-False-False-open_method3]
/usr/lib/python3/dist-packages/dask/order.py:81: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='7033cb03-100d-420d-a383-b92ef273ff53'), but file is not already closed. This may indicate a bug.
def order(
test/integration/test_integration_rioxarray.py::test_to_raster[None-False-False-False-open_method3]
/usr/lib/python3/dist-packages/dask/order.py:81: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='1b3cd0bf-4431-4e67-9899-ea26f3bb92a7'), but file is not already closed. This may indicate a bug.
def order(
test/integration/test_integration_rioxarray.py::test_to_raster[None-False-False-False-open_method3]
/usr/lib/python3/dist-packages/dask/order.py:81: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='92a03723-0a15-41e1-b19b-0ce8753e6a1e'), but file is not already closed. This may indicate a bug.
def order(
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/_task_spec.py:656: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='4f46b2a2-9097-435e-95bb-71bc24fed352'), but file is not already closed. This may indicate a bug.
if isinstance(a, GraphNode):
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/_task_spec.py:656: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='aa37ad8d-ca13-417b-8816-a3d3b21602a0'), but file is not already closed. This may indicate a bug.
if isinstance(a, GraphNode):
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/_task_spec.py:656: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='b7ee1c94-346c-445e-a6c1-4692ccaf9f03'), but file is not already closed. This may indicate a bug.
if isinstance(a, GraphNode):
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-True-True-open_method4]
/usr/lib/python3/dist-packages/xarray/core/indexes.py:2145: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='0526ea3b-39eb-4509-8e64-94770f08aac7'), but file is not already closed. This may indicate a bug.
new_indexes.update(dict.fromkeys(index_vars, new_index))
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-False-False-open_method3]
<frozen _collections_abc>:897: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='ed554af2-d0f1-414e-994c-b2e5dec7c72f'), but file is not already closed. This may indicate a bug.
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-False-False-open_method3]
<frozen _collections_abc>:897: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='0014e1d3-9ef6-47da-96f8-349035299e2f'), but file is not already closed. This may indicate a bug.
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock1-False-False-False-open_method3]
<frozen _collections_abc>:897: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='d8f92427-674a-4147-ae13-ed1b2841e30c'), but file is not already closed. This may indicate a bug.
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/order.py:699: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='4a62a86b-6ea3-4c15-80b1-014c455388a7'), but file is not already closed. This may indicate a bug.
result[r] = empty_set
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/order.py:699: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='1505daa9-beca-4bf7-9f94-d92cca14cefe'), but file is not already closed. This may indicate a bug.
result[r] = empty_set
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-True-True-open_method2]
/usr/lib/python3/dist-packages/dask/order.py:699: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='c4fd7986-2d29-49e0-a13c-b833037826f3'), but file is not already closed. This may indicate a bug.
result[r] = empty_set
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-False-False-open_method1]
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1915: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='e08e25bb-75f1-4479-ac54-845c9ec0668a'), but file is not already closed. This may indicate a bug.
return iter(self._indexes)
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-False-False-open_method1]
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1915: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='5efd8764-61e5-4ce6-b1e2-31696d98dbdb'), but file is not already closed. This may indicate a bug.
return iter(self._indexes)
test/integration/test_integration_rioxarray.py::test_to_raster[write_lock2-True-False-False-open_method1]
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1915: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='54d2d739-fd25-4cde-aa7c-763f0e3a00ec'), but file is not already closed. This may indicate a bug.
return iter(self._indexes)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-True-open_method0]
/usr/lib/python3.13/copy.py:246: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='ab16e415-7d2f-4ab8-86b9-87bebaeae64b'), but file is not already closed. This may indicate a bug.
memo[id(memo)]=[x]
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-True-open_method0]
/usr/lib/python3.13/copy.py:246: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='dfb01c45-fa25-415d-984b-392648afa576'), but file is not already closed. This may indicate a bug.
memo[id(memo)]=[x]
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-True-open_method0]
/usr/lib/python3.13/copy.py:246: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='6cebbc4b-b10b-4326-b258-fafafc229e47'), but file is not already closed. This may indicate a bug.
memo[id(memo)]=[x]
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-True-open_method3]
/usr/lib/python3/dist-packages/pandas/core/dtypes/common.py:1600: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='24f90f82-c1a4-4f74-a9f9-d7ae1d83f717'), but file is not already closed. This may indicate a bug.
if not all(is_hashable(arg) for arg in args):
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-False-open_method1]
<frozen _collections_abc>:873: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='0dc27dda-3b05-4ba5-8e2e-3f63a7cc4c4e'), but file is not already closed. This may indicate a bug.
test/integration/test_integration_rioxarray.py::test_to_raster_3d[None-False-False-open_method3]
/usr/lib/python3/dist-packages/dask/_task_spec.py:647: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='93f02d95-c934-41ea-8728-ab98604366f7'), but file is not already closed. This may indicate a bug.
self.args = tuple(
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='f638f463-86c9-44e4-bb68-d9dea8f64ecc'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='76404b8a-702d-4097-9c82-b40fcd7517d0'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='5c569547-e194-42b7-bb8a-56ca054083f8'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='e461f7ae-27b9-4e46-aab5-b71f67bf9969'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='dd18f74d-c042-4969-bdba-453111e80d5b'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='63a5e83d-272f-4867-b791-0ad0bc48427e'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='86c350d4-84a6-4a44-9c47-a896f2c86e04'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='bb142dfd-da29-4d36-99a2-a1f9e8e83c44'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock1-False-True-open_method4]
/usr/lib/python3.13/copy.py:253: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='0cb44af4-f951-4a5e-84b5-aafa23b1f3a4'), but file is not already closed. This may indicate a bug.
args = (deepcopy(arg, memo) for arg in args)
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock2-True-True-open_method0]
/usr/lib/python3/dist-packages/xarray/structure/alignment.py:439: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='b5f959ef-f535-47db-b62f-723b8a222017'), but file is not already closed. This may indicate a bug.
zip(
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock2-True-True-open_method3]
/usr/lib/python3/dist-packages/pandas/core/dtypes/common.py:1600: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='a222f51e-4ba1-442f-a505-efeb8fc414fb'), but file is not already closed. This may indicate a bug.
if not all(is_hashable(arg) for arg in args):
test/integration/test_integration_rioxarray.py::test_to_raster_3d[write_lock2-True-False-open_method3]
/usr/lib/python3/dist-packages/dask/order.py:81: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='e673c529-cac4-4e70-9ca2-884a76d0c87f'), but file is not already closed. This may indicate a bug.
def order(
test/integration/test_integration_rioxarray.py::test_to_raster__scales__offsets[True]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/integration/test_integration_rioxarray.py:1881: SerializationWarning: variable 'air_temperature' has _Unsigned attribute but is not of integer type. Ignoring attribute.
with rioxarray.open_rasterio(
test/integration/test_integration_rioxarray.py::test_to_raster__scales__offsets[True]
test/integration/test_integration_rioxarray.py::test_to_raster__scales__offsets[False]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/rioxarray/_io.py:674: UserWarning: Scales differ across bands. The 'scale_factor' attribute will not be added. See the 'scales' attribute.
warnings.warn(
test/integration/test_integration_rioxarray.py::test_to_raster__scales__offsets[True]
test/integration/test_integration_rioxarray.py::test_to_raster__scales__offsets[False]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/rioxarray/_io.py:683: UserWarning: Offsets differ across bands. The 'add_offset' attribute will not be added. See the 'offsets' attribute.
warnings.warn(
test/integration/test_integration_rioxarray.py::test_to_raster__dataset__mask_and_scale[True-True]
test/integration/test_integration_rioxarray.py::test_to_raster__dataset__mask_and_scale[None-True]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/integration/test_integration_rioxarray.py:1975: SerializationWarning: variable 'air_temperature' has _Unsigned attribute but is not of integer type. Ignoring attribute.
with rioxarray.open_rasterio(
test/integration/test_integration_rioxarray.py::test_write_nodata__array__inplace
/usr/lib/python3/dist-packages/pandas/core/indexes/base.py:1773: RuntimeWarning: deallocating CachingFileManager(<class 'netCDF4._netCDF4.Dataset'>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/test_find_crs.nc', mode='r', kwargs={'clobber': True, 'diskless': False, 'persist': False, 'format': 'NETCDF4'}, manager_id='4ed09b86-f847-47c2-96cd-599239b33565'), but file is not already closed. This may indicate a bug.
return FrozenList((self.name,))
test/integration/test_integration_rioxarray.py::test_nonstandard_dims_find_dims
/usr/lib/python3/dist-packages/xarray/structure/alignment.py:594: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='5b2a0f6b-bef9-4f0e-ba9a-594b13d8d9e2'), but file is not already closed. This may indicate a bug.
dims = {d for var in aligned_idx_vars.values() for d in var.dims}
test/integration/test_integration_rioxarray.py::test_nonstandard_dims_find_dims
/usr/lib/python3/dist-packages/xarray/structure/alignment.py:594: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='2ccfa98a-7490-4eb0-833b-682942933d6e'), but file is not already closed. This may indicate a bug.
dims = {d for var in aligned_idx_vars.values() for d in var.dims}
test/integration/test_integration_rioxarray.py::test_nonstandard_dims_find_dims
/usr/lib/python3/dist-packages/xarray/structure/alignment.py:594: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'netcdf:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/PLANET_SCOPE_3D.nc:green', mode='r', kwargs={'sharing': False}, manager_id='4f15202a-de95-4b77-a4bd-f3e68f00efe6'), but file is not already closed. This may indicate a bug.
dims = {d for var in aligned_idx_vars.values() for d in var.dims}
test/integration/test_integration_xarray_plugin.py::test_xarray_open_dataset__drop_variables
/usr/lib/python3/dist-packages/xarray/core/variable.py:3134: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/cog.tif', mode='r', kwargs={'sharing': False}, manager_id='2fc6afe5-46c7-4f36-bb57-f24c95a07860'), but file is not already closed. This may indicate a bug.
for dim, size in zip(var.dims, var.shape, strict=True):
test/integration/test_integration_xarray_plugin.py::test_xarray_open_dataset__drop_variables
/usr/lib/python3/dist-packages/xarray/core/variable.py:3134: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/test_rpcs.tif', mode='r', kwargs={'sharing': False}, manager_id='ee29bb04-7e92-42cf-85f8-f5ce6f84b9ca'), but file is not already closed. This may indicate a bug.
for dim, size in zip(var.dims, var.shape, strict=True):
test/integration/test_integration_xarray_plugin.py::test_xarray_open_dataset__drop_variables
/usr/lib/python3/dist-packages/xarray/core/variable.py:3134: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/cog.tif', mode='r', kwargs={'sharing': False}, manager_id='6745540e-be0b-4a9b-a9fd-0aaf25dec447'), but file is not already closed. This may indicate a bug.
for dim, size in zip(var.dims, var.shape, strict=True):
test/integration/test_integration_xarray_plugin.py::test_xarray_open_dataset__drop_variables
/usr/lib/python3/dist-packages/xarray/core/variable.py:3134: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/cog.tif', mode='r', kwargs={'sharing': False}, manager_id='3c46f87e-79f5-4f06-ac5c-3955fd9258bb'), but file is not already closed. This may indicate a bug.
for dim, size in zip(var.dims, var.shape, strict=True):
test/integration/test_integration_xarray_plugin.py::test_xarray_open_dataset__drop_variables
/usr/lib/python3/dist-packages/xarray/core/variable.py:3134: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/cog.tif', mode='r', kwargs={'sharing': False}, manager_id='28909aef-6a8b-451e-995e-db136bbb32c3'), but file is not already closed. This may indicate a bug.
for dim, size in zip(var.dims, var.shape, strict=True):
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b02_1', mode='r', kwargs={'sharing': False}, manager_id='a29f5d42-ea4f-4e8a-b13e-ab1053e4b81b'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b03_1', mode='r', kwargs={'sharing': False}, manager_id='79461677-6846-4508-94fb-8736a3a764d7'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b04_1', mode='r', kwargs={'sharing': False}, manager_id='5b4ed15f-48ea-4f96-886d-4c799d5652f3'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b05_1', mode='r', kwargs={'sharing': False}, manager_id='cff7d9c8-cd3f-40f0-9500-c7b1857103b2'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b06_1', mode='r', kwargs={'sharing': False}, manager_id='9e8d644f-03d9-4530-b0a9-a6f289d5614c'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b07_1', mode='r', kwargs={'sharing': False}, manager_id='7639a441-969d-4715-a894-3093a438ffaf'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:QC_500m_1', mode='r', kwargs={'sharing': False}, manager_id='3a9a15fa-bb2b-4878-8d31-0aaee0c060a8'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:obscov_500m_1', mode='r', kwargs={'sharing': False}, manager_id='5406e9ac-a6a1-4685-a202-9e9ba3956abe'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
/usr/lib/python3/dist-packages/xarray/core/indexes.py:1747: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:iobs_res_1', mode='r', kwargs={'sharing': False}, manager_id='7e384659-99df-4fdf-95cd-2a354e8e1288'), but file is not already closed. This may indicate a bug.
id_coord_names[v].append(k)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED test/integration/test_integration_rioxarray.py::test_clip_box__auto_expand[open_rasterio]
FAILED test/integration/test_integration_rioxarray.py::test_clip_box__auto_expand[modis_clip3]
FAILED test/integration/test_integration_rioxarray.py::test_clip_box__auto_expand[modis_clip4]
FAILED test/integration/test_integration_rioxarray.py::test_reproject[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__grid_mapping[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__masked[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__str_resample[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__no_transform[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__no_nodata[modis_reproject2-None]/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MODIS_ARRAY.nc', mode='r', kwargs={'sharing': False}, manager_id='74fa7a52-1b8b-47da-8ad0-7ce69be26a74'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:SensorZenith_1', mode='r', kwargs={'sharing': False}, manager_id='c36a7bc5-1b70-44a4-80c0-611e35cac78f'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:SensorAzimuth_1', mode='r', kwargs={'sharing': False}, manager_id='da06c23b-a396-452d-8255-b86efd9a7cb2'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:Range_1', mode='r', kwargs={'sharing': False}, manager_id='1db1226f-29f5-4cce-ab22-dd443586c4fe'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:SolarZenith_1', mode='r', kwargs={'sharing': False}, manager_id='d33dd879-ba07-4618-ac84-acc647869ae4'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:SolarAzimuth_1', mode='r', kwargs={'sharing': False}, manager_id='93b9bf18-6f3c-4fcd-8aa5-2150768cbba3'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:gflags_1', mode='r', kwargs={'sharing': False}, manager_id='40c60337-78cb-4af6-9ace-a13705f1e0b5'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:orbit_pnt_1', mode='r', kwargs={'sharing': False}, manager_id='e8ec2523-cb6c-42e9-a812-0cae3b9f8f37'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:sur_refl_b01_1', mode='r', kwargs={'sharing': False}, manager_id='dba1dddc-56bb-4132-89db-0fe32d6c40e1'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:num_observations_500m', mode='r', kwargs={'sharing': False}, manager_id='25a62062-c38b-4a23-a041-2273d36a3a02'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:granule_pnt_1', mode='r', kwargs={'sharing': False}, manager_id='2cec7fbf-ee1a-473a-b042-49e5968f26d0'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:state_1km_1', mode='r', kwargs={'sharing': False}, manager_id='436dd9a6-50ae-4dc6-bdb1-078774652c54'), but file is not already closed. This may indicate a bug.
gc.collect()
/usr/lib/python3/dist-packages/_pytest/unraisableexception.py:33: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7f54bc0ab9c0>, 'HDF4_EOS:EOS_GRID:/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_1km_2D:num_observations_1km', mode='r', kwargs={'sharing': False}, manager_id='e3eaddc4-36c4-4470-96ca-cbbabff78990'), but file is not already closed. This may indicate a bug.
gc.collect()
FAILED test/integration/test_integration_rioxarray.py::test_reproject__no_nodata[modis_reproject2--9999]
FAILED test/integration/test_integration_rioxarray.py::test_reproject__no_nodata_masked[modis_reproject2]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match[open_rasterio]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match[modis_reproject_match3]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match[modis_reproject_match4]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__masked[open_rasterio]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__masked[modis_reproject_match3]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__masked[modis_reproject_match4]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__no_transform_nodata[open_rasterio]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__no_transform_nodata[modis_reproject_match_coords3]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__pass_nodata[open_rasterio]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__pass_nodata[modis_reproject_match__passed_nodata3]
FAILED test/integration/test_integration_rioxarray.py::test_reproject_match__pass_nodata[modis_reproject_match__passed_nodata4]
= 22 failed, 512 passed, 4 skipped, 8 deselected, 2 xfailed, 4 xpassed, 173 warnings in 12.18s =
E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build; python3.13 -m pytest -k "not test_clip_geojson__no_drop"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" --parallel=2 returned exit code 13
make: *** [debian/rules:13: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------
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