[Debian-science-sagemath] Sage 9.1 build issues

[Tobias Hansen]

Hi,

Thanks for trying it! I think the mail only came through the mailing list today because of the large attachment. Better keep me in cc.

I can't look at the log now due to internet problems, but the file handle leak would lead to not all tests being run. It would then say below the test summary:
Doctests interrupted: xxxx/yyyy files tested

Did you run in a chroot (e.g. with sbuild) and in parallel? Maybe in a serial build the leak wouldn't exceed the limit. I usually build with 8 threads.

Don't worry about the configure output. That upstream feature is new and we are not using it yet since it is still incomplete.

Best,
Tobias

On June 25, 2020 4:21:56 PM GMT+02:00, John Scott <jscott at posteo.net> wrote:
>Hi,
>
>I tried building Sage 9.1 and don't believe I reproduced the doctest
>issues 
>with the file handles as mentioned before, granted this is the only
>build I've 
>done and will try again. I had 610 test failures and attached my build
>log.
>
>There were also excerpts from the configuration that caught my eye
>about not 
>using available system packages and have added these below.
>
>> checking is pari_elldata installed? ... no; cannot use system pari/GP
>> without elldata package configure: Install elldata package and
>reconfigure.
>> configure: Otherwise Sage will build its own pari/GP.
>> checking is pari_galdata installed? ... yes
>> checking is pari_galpol installed? ... no; cannot use system pari/GP
>without
>> galpol package configure: Install galpol package and reconfigure.
>> configure: Otherwise Sage will build its own pari/GP.
>> checking is pari_seadata installed? ... yes
>> checking whether hyperellcharpoly bug is fixed... yes
>> checking whether bnfisunit bug of pari 2.11.3 is fixed... yes
>> configure: no suitable system package found for SPKG pari
>
>> checking whether any of ntl *pari* flint is installed as or will be
>installed
>> as SPKG... yes; install eclib as well
>
>
>> checking for glpsol... no
>> configure: glpsol not found. Installing glpk
>> configure: no suitable system package found for SPKG glpk
>> using Sage's glpk SPKG
>glpsol is provided by package glpk-utils but not a build-dep
>> checking whether any of *glpk* gmp mpir is installed as or will be
>installed
>> as SPKG... yes; install ppl as well
>
>> cddlib-0.94j: no suitable system package; will be installed as an
>SPKG
>Available as libcdd-dev 094j; build-deps only mention libcdd-tools
>> curl-7.62.0.p0: no suitable system package; will be installed as an
>SPKG
>not in build-deps
>> eclib-20190909: no suitable system package; will be installed as an
>SPKG
>> fflas_ffpack-2.4.3: no suitable system package; will be installed as
>an SPKG
>> glpk-4.65.p0: no suitable system package; will be installed as an
>SPKG
>> iml-1.0.4p1.p2: no suitable system package; will beinstalled as an
>SPKG
>> ppl-1.2.p1: no suitable system package; will be installed as an SPKG
>These are in build-deps and the versions match
>
>> openblas-0.3.9: no suitable system package; will be installed as an
>SPKG
>> yasm-1.3.0.p0: no suitable system package; will be installed as an
>SPKG
>Not build-deps but versions match with Debian archive
>> zeromq-4.2.5: no suitable system package; will be installed as an
>SPKG
>Python bindings are in build-deps, but if this refers to C maybe
>libzmq3-dev 
>4.3.2 is needed.
>
>> configure: hint: installing the following system packages is
>recommended and
>> may avoid building some of the above SPKGs from source: configure:  
>$ sudo
>> apt-get update
>> $ sudo apt-get install libboost-dev coinor-cbc coinor-libcbc-dev
>cmake
>> pari-gp2c libisl-dev ninja-build pandoc libxml-libxslt-perl
>> libxml-writer-perl libxml2-dev libperl-dev libfile-slurp-perl
>libjson-perl
>> libsvg-perl libterm-readkey-perllibterm-readline-gnu-perl
>libmongodb-perl
>> libterm-readline-gnu-perl
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-science-sagemath/attachments/20200704/94f582c8/attachment.html>