[Debichem-devel] Bug#459116: openbabel: FTBFS with dash: test cml failed

[Lucas Nussbaum]

Package: openbabel
version: 2.1.1-2
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-dash-20080103 qa-ftbfs-dash

Hi,

During a rebuild of all packages in sid using /bin/dash as /bin/sh, your package failed to build.

Relevant part:

 > make[4]: Entering directory `/build/user/openbabel-2.1.1/test'
 > aromatic......ok
 > atom..........ok
 > bond..........ok
 > cansmi........ok
 > conversion....==============================
 > *** Open Babel Warning  in ReadMolecule
 >   WARNING: Problems reading a MDL file
 > Cannot read title line
 > 
 > ==============================
 > *** Open Babel Warning  in ReadMolecule
 >   WARNING: Problems reading a MDL file
 > Cannot read title line
 > 
 > ok
 > data..........ok
 > format........ok
 > formula.......ok
 > formalcharge..ok
 > inchi.........ok
 > inchi2........ok
 > internalcoord.ok
 > iterators.....ok
 > invalidsmarts.ok
 > invalidsmiles.ok
 > logp_psa......ok
 > math..........ok
 > mol...........ok
 > residue.......ok
 > rings.........ok
 > smarts........ok
 > smilesmatch...ok
 > unitcell......ok
 > cml...........dubious
 > 	Test returned status 127 (wstat 32512, 0x7f00)
 > test-set......skipped
 >         all skipped: - roundtrip test set not found.
 > Failed Test Stat Wstat Total Fail  Failed  List of Failed
 > -------------------------------------------------------------------------------
 > cml.sh       127 32512    ??   ??       %  ??
 > 1 test skipped.
 > Failed 1/25 test scripts, 96.00% okay. 0/107582 subtests failed, 100.00% okay.
 > FAIL: wrapper.sh
 > ========================================================
 > 1 of 1 tests failed
 > Please report to openbabel-discuss at lists.sourceforge.net
 > ========================================================
 > make[4]: *** [check-TESTS] Error 1
 > make[4]: Leaving directory `/build/user/openbabel-2.1.1/test'
 > make[3]: *** [check-am] Error 2
 > make[3]: Leaving directory `/build/user/openbabel-2.1.1/test'
 > make[2]: *** [check-recursive] Error 1
 > make[2]: Leaving directory `/build/user/openbabel-2.1.1/test'
 > make[1]: *** [check-recursive] Error 1
 > make[1]: Leaving directory `/build/user/openbabel-2.1.1'
 > make: *** [debian/stamp-makefile-check] Error 2
 > dpkg-buildpackage: failure: debian/rules build gave error exit status 2

The full build log is available from:
	http://people.debian.org/~lucas/logs/2008/01/03.dash/

Rumors say that Ubuntu is using dash as /bin/sh on their buildds, so a patch
might be available. Check <http://packages.qa.debian.org/openbabel>, or
directly on launchpad: <https://launchpad.net/ubuntu/+source/openbabel>.

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |