[Debichem-devel] Bug#543059: gromacs: FTBFS: /usr/bin/install: will not overwrite just-created `/build/user-gromacs_4.0.5-3-amd64-USJwHp/gromacs-4.0.5/debian/gromacs/usr/include/gromacs/gmx_parallel_3dfft.h' with `../../../include/gmx_parallel_3dfft.h'

[Lucas Nussbaum]

Package: gromacs
Version: 4.0.5-3
Severity: serious
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20090822 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[4]: Entering directory `/build/user-gromacs_4.0.5-3-amd64-USJwHp/gromacs-4.0.5/build/basic/include'
> make[4]: Nothing to be done for `install-exec-am'.
> test -z "/usr/include/gromacs" || /bin/mkdir -p "/build/user-gromacs_4.0.5-3-amd64-USJwHp/gromacs-4.0.5/debian/gromacs/usr/include/gromacs"
>  /usr/bin/install -c -m 644 ../../../include/3dview.h ../../../include/assert.h ../../../include/atomprop.h ../../../include/bondf.h ../../../include/calcgrid.h ../../../include/calch.h ../../../include/calcmu.h ../../../include/checkpoint.h ../../../include/confio.h ../../../include/constr.h ../../../include/copyrite.h ../../../include/coulomb.h ../../../include/dihre.h ../../../include/disre.h ../../../include/domdec.h ../../../include/domdec_network.h ../../../include/do_fit.h ../../../include/ebin.h ../../../include/edsam.h ../../../include/enxio.h ../../../include/gmx_fatal.h ../../../include/ffscanf.h ../../../include/fftgrid.h ../../../include/filenm.h ../../../include/force.h ../../../include/futil.h ../../../include/gbutil.h ../../../include/gmx_ana.h ../../../include/gmx_arpack.h ../../../include/gmx_blas.h ../../../include/gmxcomplex.h ../../../include/gmx_cyclecounter.h ../../../include/gmxfio.h ../../../include/gmx_fft.h ../../../include/gmx_lapack.h ../../../include/gmx_random.h ../../../include/gmx_parallel_3dfft.h ../../../include/gmx_system_xdr.h ../../../include/gmx_thread.h ../../../include/gmx_parallel_3dfft.h '/build/user-gromacs_4.0.5-3-amd64-USJwHp/gromacs-4.0.5/debian/gromacs/usr/include/gromacs'
> /usr/bin/install: will not overwrite just-created `/build/user-gromacs_4.0.5-3-amd64-USJwHp/gromacs-4.0.5/debian/gromacs/usr/include/gromacs/gmx_parallel_3dfft.h' with `../../../include/gmx_parallel_3dfft.h'
> make[4]: *** [install-pkgincludeHEADERS] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2009/08/22/gromacs_4.0.5-3_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |