[Debichem-devel] Bug#531419: gromacs: FTBFS: error: couldn't find library libmd_mpi_d_openmpi.so.5

[Kurt Roeckx]

Source: gromacs
Version: 4.0.5-2
Severity: serious

Hi,

There was an error while trying to autobuild your package:

> Start Time: 20090601-0920

[...]

> Build-Depends: debhelper (>= 5.0.0), dpatch, libfftw3-dev, libmpich1.0-dev (>= 1.2.7-6), lam4-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libxt-dev, libsm-dev, libice-dev, libxext-dev, libxp-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], autotools-dev (>= 20070725.1), autoconf, automake (>= 1:1.10), libtool

[...]

> Toolchain package versions: libc6-dev_2.9-13 linux-libc-dev_2.6.29-5 g++-4.3_4.3.3-10 gcc-4.3_4.3.3-10 binutils_2.19.1-1 libstdc++6_4.4.0-5 libstdc++6-4.3-dev_4.3.3-10
> 

[...]

> dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib
> dpkg-shlibdeps: warning: dependency on libnsl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0 debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0 debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0 debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly linked against it (they use none of its symbols).
> dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0 debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0 debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0 debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly linked against it (they use none of its symbols).
> dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib
> dpkg-shlibdeps: error: couldn't find library libmd_mpi_d_openmpi.so.5 needed by debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi (ELF format: 'elf64-x86-64'; RPATH: '').
> Note: libraries are not searched in other binary packages that do not have any shlibs or symbols file.
> To help dpkg-shlibdeps find private libraries, you might need to set LD_LIBRARY_PATH.
> dh_shlibdeps: dpkg-shlibdeps returned exit code 2
> make: *** [binary-arch] Error 1
> dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave error exit status 2

A full build log can be found at:
http://buildd.debian.org/build.php?arch=amd64&pkg=gromacs&ver=4.0.5-2+b1


Kurt